Citrus Sinensis ID: 006012

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660----
Protein Sequence
MILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVSTITGITTATASGESSFSSSSFTSKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYSGEK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHcccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEccccc
Coil and Loop (DISEMBL)
millppqplsvrfpaihsacpitrhhvifqpafsvstITGITtatasgessfssssftskqndteeeeeddddVLSLQKqrydftpllnflsensnsesasalasspsslnRVEFKLAesyravpapLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMrqdgyhcdfinYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGmaqgvglspktATYAAVITALSNSGRTIEAEAVFEELkesglkprtKAYNALLKGYVKMGYLKDAEFVVSEmersgvlpdehtYSLLIDAYANAGRWESARIVLKEMevshakpnsfIYSRILAGYRDRGEWQRTFQVLKEMkssgvepdthFYNVMIDTFGKYNCLHHAMAAFDRMlsegiepdtitwnTLIDCHFKCGRYDRAEELFEEMqergyfpcttTYNIMINLLGEQERWEDVKRLLGNmraqgllpnvVTYTTLVDIygqsgrfddAIECLEGLSDQAVNAFRVMrtdglkpsnLALNSLINAFGEDQRDAEAFAVLQYMKenglkpdvVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYSGEK
Flexible Loop (DISEMBL)
millppqplsVRFPAIHSACPITRHHVIFQPAFSVSTITGITTAtasgessfssssftskqndteeeeeddddvLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFeelkesglkprtKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMevshakpnsfiYSRILAGYRDRGEWQRTFQVLKemkssgvepdTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMraqgllpnVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMkenglkpdvVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYSGEK
Low Complexity Region (SEG)
MILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVstitgittatasgessfssssftsKQNdteeeeeddddVLSLQKQRYDFTpllnflsensnsesasalasspsslnRVEFKLAESYRAVPAPLWHsllknlcssnssIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYSGEK
Disordered region (IsUnstruct)
*********SVRFPAIHSACPITRHHVIFQPAFSVSTITGITT****************************************FTPLL************************VEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSY****
Disordered Region (DISOPRED)
********LSVRFPAIHSACPI***************ITGITTATASGESSFSSSSFTSK***T***EEDDDDVLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYSGE*
Disordered Region (DISEMBL)
MILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVSTITGITTA******************************LSLQKQRYDFTPLLNFLSEN***************LNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYSGEK
Disordered Region (DISPRO)
*ILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVSTITGITTATASGESSFSSSSFTSKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVSTITGITTATASGESSFSSSSFTSKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLSYSGEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	664	2.2.26 [Sep-21-2011]
Q8L844	709	Pentatricopeptide repeat-	yes	no	0.968	0.906	0.688	0.0
O64624	822	Pentatricopeptide repeat-	no	no	0.706	0.570	0.265	3e-53
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.706	0.572	0.260	1e-52
Q76C99	791	Protein Rf1, mitochondria	N/A	no	0.751	0.630	0.270	3e-52
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.728	0.781	0.271	9e-51
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.816	0.592	0.267	2e-50
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.748	0.680	0.255	1e-49
Q9SXD1	630	Pentatricopeptide repeat-	no	no	0.792	0.834	0.267	4e-49
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.740	0.782	0.267	4e-48
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.679	0.603	0.274	1e-47

>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/675 (68%), Positives = 541/675 (80%), Gaps = 32/675 (4%)

Query: 1   MILLPPQPL-SVRFPAIHSACPITRHHV-IFQPAFSVSTITGITTATASGESSFSSSSFT 58
           M+LL   PL S RF +++       HH   FQP   +S  +  T+A+    S  SSSS+ 
Sbjct: 1   MLLLQQPPLVSTRFHSLYFLTHHHHHHHRFFQPP--ISAFSATTSASLPSPSPSSSSSYF 58

Query: 59  SKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESA----SALASSPSSLNRVE 114
           S  N  +  EE+D++  S   +RYDF+PLL FLS     E A    S   +SP SLN VE
Sbjct: 59  SSWNGLDTNEEEDNEFSSEVHRRYDFSPLLKFLSRFGPVELALDSESESEASPESLNPVE 118

Query: 115 FKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALG 174
           F L ESYRAVPAP WHSL+K+L SS SS+ LAYAVVSWLQKHNLC+SYELLYSILIHALG
Sbjct: 119 FDLVESYRAVPAPYWHSLIKSLTSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALG 178

Query: 175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV 234
           RSEKLYEAFLLSQ+Q LTPLTYNALI ACARN+D+EKALNL++KMRQDGY  DF+NYSLV
Sbjct: 179 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLV 238

Query: 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294
           IQSLTR+NKIDS +L +LYKEIE DK+ELD QL+ND+I+GFAK+GD SKA++ LGMAQ  
Sbjct: 239 IQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQAT 298

Query: 295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354
           GLS KTAT  ++I+AL++SGRT+EAEA+FEEL++SG+KPRT+AYNALLKGYVK G LKDA
Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358

Query: 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414
           E +VSEME+ GV PDEHTYSLLIDAY NAGRWESARIVLKEME    +PNSF++SR+LAG
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418

Query: 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD 474
           +RDRGEWQ+TFQVLKEMKS GV+PD  FYNV+IDTFGK+NCL HAM  FDRMLSEGIEPD
Sbjct: 419 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 478

Query: 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534
            +TWNTLIDCH K GR+  AEE+FE M+ RG  PC TTYNIMIN  G+QERW+D+KRLLG
Sbjct: 479 RVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLG 538

Query: 535 NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE------------------------G 570
            M++QG+LPNVVT+TTLVD+YG+SGRF+DAIECLE                        G
Sbjct: 539 KMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRG 598

Query: 571 LSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYT 630
           LS+QAVNAFRVM +DGLKPS LALNSLINAFGED+RDAEAFAVLQYMKENG+KPDVVTYT
Sbjct: 599 LSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYT 658

Query: 631 TLMKALIRVDKFHKV 645
           TLMKALIRVDKF KV
Sbjct: 659 TLMKALIRVDKFQKV 673

Arabidopsis thaliana (taxid: 3702)

>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/501 (26%), Positives = 239/501 (47%), Gaps = 32/501 (6%)

Query: 168 ILIHALGR------SEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQ 221
           I +  LGR      + KL +   L Q   L    Y  ++ A +R    EKA++L  +M++
Sbjct: 180 IFVRILGRESQYSVAAKLLDKIPL-QEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKE 238

Query: 222 DGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDA 281
            G     + Y++++    +  +    +L  L  E+    ++ D    + V+   A+ G  
Sbjct: 239 MGPSPTLVTYNVILDVFGKMGRSWRKILGVL-DEMRSKGLKFDEFTCSTVLSACAREGLL 297

Query: 282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL 341
            +A  F    +  G  P T TY A++     +G   EA +V +E++E+     +  YN L
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNEL 357

Query: 342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA 401
           +  YV+ G+ K+A  V+  M + GV+P+  TY+ +IDAY  AG+ + A  +   M+ +  
Sbjct: 358 VAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417

Query: 402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA 461
            PN+  Y+ +L+    +       ++L +MKS+G  P+   +N M+   G          
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477

Query: 462 AFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG 521
            F  M S G EPD  T+NTLI  + +CG    A +++ EM   G+  C TTYN ++N L 
Sbjct: 478 VFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALA 537

Query: 522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG------RFDDAIE--------- 566
            +  W   + ++ +M+++G  P   +Y+ ++  Y + G      R ++ I+         
Sbjct: 538 RKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWM 597

Query: 567 -----CLEGLSDQAV----NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM 617
                 L     +A+     AF + +  G KP  +  NS+++ F  +    +A  +L+ +
Sbjct: 598 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI 657

Query: 618 KENGLKPDVVTYTTLMKALIR 638
           +E+GL PD+VTY +LM   +R
Sbjct: 658 REDGLSPDLVTYNSLMDMYVR 678

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 234/488 (47%), Gaps = 19/488 (3%)

Query: 160 YSYE-LLYSILIHALGRSEKLYEAFLLSQRQRL---TP--LTYNALISACARNDDLEKAL 213
           +SY+ + Y+ L+   G+S +  EA  +     L   +P  +TYN+LISA AR+  L++A+
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369

Query: 214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273
            L ++M + G   D   Y+ ++    R  K++S++   +++E+     + +    N  I 
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM--SIFEEMRNAGCKPNICTFNAFIK 427

Query: 274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP 333
            +   G  ++ M+        GLSP   T+  ++     +G   E   VF+E+K +G  P
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 487

Query: 334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVL 393
             + +N L+  Y + G  + A  V   M  +GV PD  TY+ ++ A A  G WE +  VL
Sbjct: 488 ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL 547

Query: 394 KEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453
            EME    KPN   Y  +L  Y +  E      + +E+ S  +EP       ++    K 
Sbjct: 548 AEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC 607

Query: 454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTY 513
           + L  A  AF  +   G  PD  T N+++  + +     +A  + + M+ERG+ P   TY
Sbjct: 608 DLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATY 667

Query: 514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573
           N ++ +      +   + +L  + A+G+ P++++Y T++  Y ++ R  DA         
Sbjct: 668 NSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI------ 721

Query: 574 QAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM 633
                F  MR  G+ P  +  N+ I ++  D    EA  V++YM ++G +P+  TY +++
Sbjct: 722 -----FSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776

Query: 634 KALIRVDK 641
               ++++
Sbjct: 777 DGYCKLNR 784

Arabidopsis thaliana (taxid: 3702)

>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1

 Score =  207 bits (526), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 244/525 (46%), Gaps = 26/525 (4%)

Query: 124 VPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAF 183
           V A  +  LLK LC+   + D    V+  + +   C      Y+IL+  L    +  EA 
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELG-CIPNVFSYNILLKGLCDENRSQEAL 178

Query: 184 LL-----SQRQRLTP---LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVI 235
            L       R   +P   ++Y  +I+   +  D +KA +   +M   G   D + Y+ +I
Sbjct: 179 ELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSII 238

Query: 236 QSLTRTNKIDSSL--LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG 293
            +L +   +D ++  L  + K    + +  D    N ++ G+  +G   +A+ FL   + 
Sbjct: 239 AALCKAQAMDKAMEVLNTMVK----NGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294

Query: 294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353
            G+ P   TY+ ++  L  +GR +EA  +F+ + + GLKP    Y  LL+GY   G L +
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354

Query: 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413
              ++  M R+G+ PD + +S+LI AYA  G+ + A +V  +M      PN+  Y  ++ 
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414

Query: 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP 473
                G  +      ++M   G+ P    YN +I      N    A      ML  GI  
Sbjct: 415 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474

Query: 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533
           +TI +N++ID H K GR   +E+LFE M   G  P   TYN +IN      + ++  +LL
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLA 593
             M + GL PN VTY+TL++ Y +  R +DA+             F+ M + G+ P  + 
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALV-----------LFKEMESSGVSPDIIT 583

Query: 594 LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR 638
            N ++    + +R A A  +   + E+G + ++ TY  ++  L +
Sbjct: 584 YNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628

Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  202 bits (513), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 147/542 (27%), Positives = 239/542 (44%), Gaps = 58/542 (10%)

Query: 151 SWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLE 210
           S + +  L Y   L   I+   +  +  L+E+ ++  R   TP+ +N L SA AR    +
Sbjct: 29  SSITEAKLSYKERLRNGIVDIKVNDAIDLFES-MIQSRPLPTPIDFNRLCSAVARTKQYD 87

Query: 211 KALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKI--DSSLLQKLYK-EIECDKIE----- 262
             L     M  +G   D    +++I    R  K+    S+L + +K   E D I      
Sbjct: 88  LVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLV 147

Query: 263 ----LDGQL---------------------LNDVIVGFAKAGDASKAMRFLGMAQGVGLS 297
               L+G++                     ++ +I G    G  S+A+  +      G  
Sbjct: 148 NGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQ 207

Query: 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFV 357
           P   TY  V+  L  SG +  A  +F +++E  +K     Y+ ++    K G   DA  +
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267

Query: 358 VSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD 417
            +EME  G+  D  TYS LI    N G+W+    +L+EM   +  P+   +S ++  +  
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327

Query: 418 RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT 477
            G+     ++  EM + G+ PDT  YN +ID F K NCLH A   FD M+S+G EPD +T
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387

Query: 478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR 537
           ++ LI+ + K  R D    LF E+  +G  P T TYN ++    +  +    K L   M 
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447

Query: 538 AQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLS------------------------D 573
           ++G+ P+VVTY  L+D    +G  + A+E  E +                         D
Sbjct: 448 SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVD 507

Query: 574 QAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM 633
            A + F  +   G+KP  +  N +I    +    +EA  + + MKE+G  PD  TY  L+
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567

Query: 634 KA 635
           +A
Sbjct: 568 RA 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 165/617 (26%), Positives = 284/617 (46%), Gaps = 75/617 (12%)

Query: 78  QKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLC 137
           ++Q    +PLL  L E   S+S S      S L++  +  + S +++ + +  S + +L 
Sbjct: 39  RRQFCSVSPLLRNLPEEE-SDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLF 97

Query: 138 SSNSSIDLAYAVVSWLQ-----KHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLT 192
           S +     A     W+      KH++ YSY  L ++LI+  G    +++  LL       
Sbjct: 98  SLDLDPKTALNFSHWISQNPRYKHSV-YSYASLLTLLINN-GYVGVVFKIRLL------- 148

Query: 193 PLTYNALISACARNDDLEKALNLMSKMRQD-----GYHCDFINYSLVIQSLTRTNKIDSS 247
                 +I +C    D    L+L  KM +D      Y      Y+ ++ SL R   +D  
Sbjct: 149 ------MIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDE- 201

Query: 248 LLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVI 307
            ++++Y E+  DK+  +    N ++ G+ K G+  +A +++      GL P   TY ++I
Sbjct: 202 -MKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLI 260

Query: 308 TA-----------------------------------LSNSGRTIEAEAVFEELKESGLK 332
                                                L  + R  EA  +F ++K+    
Sbjct: 261 MGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECF 320

Query: 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV 392
           P  + Y  L+K         +A  +V EME +G+ P+ HTY++LID+  +  ++E AR +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452
           L +M      PN   Y+ ++ GY  RG  +    V++ M+S  + P+T  YN +I  + K
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query: 453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT 512
            N +H AM   ++ML   + PD +T+N+LID   + G +D A  L   M +RG  P   T
Sbjct: 441 SN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499

Query: 513 YNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLS 572
           Y  MI+ L + +R E+   L  ++  +G+ PNVV YT L+D Y ++G+ D+A   LE   
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK-- 557

Query: 573 DQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTL 632
                    M +    P++L  N+LI+    D +  EA  + + M + GL+P V T T L
Sbjct: 558 ---------MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTIL 608

Query: 633 MKALIRVDKFHKVFSSY 649
           +  L++   F   +S +
Sbjct: 609 IHRLLKDGDFDHAYSRF 625

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  198 bits (504), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/524 (25%), Positives = 252/524 (48%), Gaps = 27/524 (5%)

Query: 122 RAVPAPLW--HSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKL 179
           R +P  L+    ++K  C+ N  ID A +++  + KH  C    ++Y  LIH+L +  ++
Sbjct: 211 RKIPPTLFTFGVVMKAFCAVNE-IDSALSLLRDMTKHG-CVPNSVIYQTLIHSLSKCNRV 268

Query: 180 YEAFLLSQRQRLTPL-----TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV 234
            EA  L +   L        T+N +I    + D + +A  ++++M   G+  D I Y  +
Sbjct: 269 NEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYL 328

Query: 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLG-MAQG 293
           +  L +  ++D++  + L+  I   +I     + N +I GF   G    A   L  M   
Sbjct: 329 MNGLCKIGRVDAA--KDLFYRIPKPEI----VIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382

Query: 294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD 353
            G+ P   TY ++I      G    A  V  +++  G KP   +Y  L+ G+ K+G + +
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDE 442

Query: 354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413
           A  V++EM   G+ P+   ++ LI A+    R   A  + +EM     KP+ + ++ +++
Sbjct: 443 AYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS 502

Query: 414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP 473
           G  +  E +    +L++M S GV  +T  YN +I+ F +   +  A    + M+ +G   
Sbjct: 503 GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPL 562

Query: 474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL 533
           D IT+N+LI    + G  D+A  LFE+M   G+ P   + NI+IN L      E+     
Sbjct: 563 DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQ 622

Query: 534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLA 593
             M  +G  P++VT+ +L++   ++GR +D +             FR ++ +G+ P  + 
Sbjct: 623 KEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL-----------TMFRKLQAEGIPPDTVT 671

Query: 594 LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALI 637
            N+L++   +     +A  +L    E+G  P+  T++ L++++I
Sbjct: 672 FNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSII 715

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2

 Score =  196 bits (499), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 148/554 (26%), Positives = 261/554 (47%), Gaps = 28/554 (5%)

Query: 101 SALASSPSSLNR--VEFKLAESYRAVPAPLWH---SLLKNLCSSNSSIDLAYAVVSWLQK 155
           S L S+ + +N+  V   L E  + +  P  H   S+L N     S + LA AV+  + K
Sbjct: 85  SKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMK 144

Query: 156 HNLCYSYELL-YSILIHALGRSEKLYEAFLLSQRQRLT-----PLTYNALISACARNDDL 209
             L Y   ++  S L++    S+++ EA  L  +  +T      +T+N LI     ++  
Sbjct: 145 --LGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKA 202

Query: 210 EKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLN 269
            +A+ L+ +M   G   D + Y +V+  L +    D+ L   L  ++E  K+E    + N
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG--DTDLAFNLLNKMEQGKLEPGVLIYN 260

Query: 270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES 329
            +I G  K      A+      +  G+ P   TY+++I+ L N GR  +A  +  ++ E 
Sbjct: 261 TIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320

Query: 330 GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESA 389
            + P    ++AL+  +VK G L +AE +  EM +  + P   TYS LI+ +    R + A
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380

Query: 390 RIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT 449
           + + + M   H  P+   Y+ ++ G+      +   +V +EM   G+  +T  YN++I  
Sbjct: 381 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 440

Query: 450 FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC 509
             +      A   F  M+S+G+ P+ +T+NTL+D   K G+ ++A  +FE +Q     P 
Sbjct: 441 LFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500

Query: 510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE 569
             TYNIMI  + +  + ED   L  N+  +G+ P+VV Y T++  +           C +
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF-----------CRK 549

Query: 570 GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTY 629
           G  ++A   F+ M+ DG  P++   N+LI A   D     +  +++ M+  G   D  T 
Sbjct: 550 GSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 609

Query: 630 TTLMKAL--IRVDK 641
             +   L   R+DK
Sbjct: 610 GLVTNMLHDGRLDK 623

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  193 bits (490), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/513 (26%), Positives = 244/513 (47%), Gaps = 21/513 (4%)

Query: 130 HSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELL-YSILIHALGRSEKLYEAFLLSQR 188
           +++L N     S + LA AV+  + K  L Y  +++  S L++     +++ EA  L  +
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMK--LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 175

Query: 189 QRL-----TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK 243
             +       +T+N LI     ++   +A+ L+ +M   G   D   Y  V+  L +   
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235

Query: 244 IDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATY 303
           ID +L   L K++E  KIE D  +   +I       + + A+         G+ P   TY
Sbjct: 236 IDLAL--SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293

Query: 304 AAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER 363
            ++I  L N GR  +A  +  ++ E  + P    ++AL+  +VK G L +AE +  EM +
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 353

Query: 364 SGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR 423
             + PD  TYS LI+ +    R + A+ + + M      PN   Y+ ++ G+      + 
Sbjct: 354 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEE 413

Query: 424 TFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLID 483
             ++ +EM   G+  +T  YN +I    +      A   F +M+S+G+ PD IT++ L+D
Sbjct: 414 GMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 473

Query: 484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP 543
              K G+ ++A  +FE +Q+    P   TYNIMI  + +  + ED   L  ++  +G+ P
Sbjct: 474 GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533

Query: 544 NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE 603
           NV+ YTT++  +           C +GL ++A   FR M+ DG  P++   N+LI A   
Sbjct: 534 NVIIYTTMISGF-----------CRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582

Query: 604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636
           D   A +  +++ M+  G   D  T + ++  L
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTISMVINML 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 222/459 (48%), Gaps = 8/459 (1%)

Query: 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLY 253
           +TYN LI    +   ++    L+  M   G   + I+Y++VI  L R  ++    +  + 
Sbjct: 241 VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE--VSFVL 298

Query: 254 KEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNS 313
            E+      LD    N +I G+ K G+  +A+         GL+P   TY ++I ++  +
Sbjct: 299 TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358

Query: 314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373
           G    A    ++++  GL P  + Y  L+ G+ + GY+ +A  V+ EM  +G  P   TY
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418

Query: 374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433
           + LI+ +   G+ E A  VL++M+     P+   YS +L+G+    +     +V +EM  
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE 478

Query: 434 SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493
            G++PDT  Y+ +I  F +      A   ++ ML  G+ PD  T+  LI+ +   G  ++
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEK 538

Query: 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553
           A +L  EM E+G  P   TY+++IN L +Q R  + KRLL  +  +  +P+ VTY TL++
Sbjct: 539 ALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598

Query: 554 IYGQSGRFDDAIE-----CLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDA 608
               +  F   +      C++G+  +A   F  M     KP   A N +I+         
Sbjct: 599 -NCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIR 657

Query: 609 EAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFS 647
           +A+ + + M ++G     VT   L+KAL +  K +++ S
Sbjct: 658 KAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNS 696

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	664
225457536	695	PREDICTED: pentatricopeptide repeat-cont	0.960	0.917	0.700	0.0
224083253	709	predicted protein [Populus trichocarpa]	0.968	0.906	0.687	0.0
255539196	695	pentatricopeptide repeat-containing prot	0.963	0.920	0.692	0.0
356508736	680	PREDICTED: pentatricopeptide repeat-cont	0.933	0.911	0.674	0.0
297795313	711	pentatricopeptide repeat-containing prot	0.875	0.817	0.729	0.0
147859909	724	hypothetical protein VITISV_040783 [Viti	0.933	0.856	0.701	0.0
224065693	709	predicted protein [Populus trichocarpa]	0.971	0.909	0.665	0.0
449453081	720	PREDICTED: pentatricopeptide repeat-cont	0.951	0.877	0.666	0.0
15238925	709	pentatricopeptide repeat-containing prot	0.968	0.906	0.688	0.0
10177016	680	maize crp1 protein-like [Arabidopsis tha	0.856	0.836	0.735	0.0

>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Vitis vinifera] gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/674 (70%), Positives = 537/674 (79%), Gaps = 36/674 (5%)

Query: 2   ILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVSTITGITTATASGESSFSSSSFTSKQ 61
           +LL P PL  RFP+ H   P+ R H I QP    +T       TASGE+S     F+   
Sbjct: 1   MLLLPAPLPTRFPSYHFLSPVLRDHRILQPPLLATTSA--AVTTASGEAS----QFSKPL 54

Query: 62  NDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSEN-SNSESASALASSP-SSLNRVEFKLAE 119
           N    E     D+ S+  +RYDFTPLL FLS + S+S+S + + S P +SL+  EF+L E
Sbjct: 55  N----EYGSSGDLNSVPNRRYDFTPLLRFLSNSESDSDSGAEVESPPPTSLDFTEFQLVE 110

Query: 120 SYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKL 179
           SYRAVPAPLWHSLLK+LCS +SSI  AY++V+WL++HNLC+SYELLYSILIHALGRSEKL
Sbjct: 111 SYRAVPAPLWHSLLKSLCSDSSSIGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEKL 170

Query: 180 YEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT 239
           YEAFLLSQRQ LTPLTYNALI ACARNDDLEKALNLMS+MR+DG+  DF+NYS +IQSLT
Sbjct: 171 YEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLT 230

Query: 240 RTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK 299
           RTNK DSS+LQK+Y EIE DKIELDGQLLND+IVGFAK+GD ++AM FL M QG GLSPK
Sbjct: 231 RTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPK 290

Query: 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVS 359
           TAT  AVITAL N+GRT EAEA+FEELKE GL PRT+AYNALLKGYVK G LKDAE +VS
Sbjct: 291 TATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVS 350

Query: 360 EMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419
           EMERSG  PDEHTYSLLIDAYANAGRWESARIVLKEME S  +PNS+++SRILA YRDRG
Sbjct: 351 EMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRG 410

Query: 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN 479
           +WQ++FQVL+EM++SGV PD HFYNVMIDTFGK NCL HA+A FDRM  EG++PD +TWN
Sbjct: 411 KWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWN 470

Query: 480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539
           TLIDCH K G +++AEELFE MQE G  PCTTTYNIMIN  GEQERWEDVK LLG M++Q
Sbjct: 471 TLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQ 530

Query: 540 GLLPNVVTYTTLVDIYGQSGRFDDAIECLE------------------------GLSDQA 575
           GLL NVVTYTTLVDIYGQSGRF DAIECLE                        GLS+QA
Sbjct: 531 GLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQA 590

Query: 576 VNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA 635
           +NAFRVMR DGLKPS L LNSLINAFGED+RDAEAF+VLQYMKEN LKPDVVTYTTLMKA
Sbjct: 591 INAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKA 650

Query: 636 LIRVDKFHKVFSSY 649
           LIRV+KF KV + Y
Sbjct: 651 LIRVEKFDKVPAVY 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa] gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/684 (68%), Positives = 550/684 (80%), Gaps = 41/684 (5%)

Query: 1   MILLPPQPLSVRFPAIHSACPITRHH------VIFQPAFSVSTITGITTATASGESSFSS 54
           M+L PP PL  RFP++++  PI  HH      +IFQP FS    T  TT  A    S+S 
Sbjct: 1   MLLFPP-PLPNRFPSVYTTSPIVHHHHHHHHHLIFQPPFSA---TSTTTNFADSSLSYSK 56

Query: 55  SSFTSKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSEN-----SNSESASALASSPSS 109
               + QND E     DDDVL LQ +RYDFTPLL++LS+           + + +SSP+S
Sbjct: 57  RLHYASQNDIEGFS--DDDVLPLQSRRYDFTPLLDYLSKKITTSTDTDSDSDSASSSPTS 114

Query: 110 LNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSIL 169
           L+  EF+LAESYR VP PLWHSLLK+LC+S+SSI LAYAVV WLQKHNLC+SYELLYSIL
Sbjct: 115 LDPTEFQLAESYRVVPGPLWHSLLKSLCTSSSSIGLAYAVVLWLQKHNLCFSYELLYSIL 174

Query: 170 IHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFI 229
           IHALG+SEKLYEAFLLSQRQ LTPLTYNALISACARN+DLEKALNL+++MRQDGY  DF+
Sbjct: 175 IHALGQSEKLYEAFLLSQRQNLTPLTYNALISACARNNDLEKALNLITRMRQDGYPSDFV 234

Query: 230 NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLG 289
           NYSL+I+SL R N++DS++LQKLY+EIECDK+ELD QL ND+IVGFAKAGD SKA+ FLG
Sbjct: 235 NYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLG 294

Query: 290 MAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG 349
           + QG GLS KTAT  AVI AL N GRT+EAEA+FEE++++GLKPRT+AYNALL+GYVK G
Sbjct: 295 VVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAG 354

Query: 350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYS 409
            LKDAEFVVSEMERSGV P+E TYS LIDAY NAGRWESARIVLKEME S+ +PN++++S
Sbjct: 355 LLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFS 414

Query: 410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE 469
           RIL+ YRD+GEWQ++FQVL+EM++SGV PD  FYNVMIDTFGK+NCL HAMA FDRMLSE
Sbjct: 415 RILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSE 474

Query: 470 GIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDV 529
           GIEPDT+TWNTLIDCH + G++DRAEELFEEM E GY PC TT+NIMIN  G+QERW+DV
Sbjct: 475 GIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDV 534

Query: 530 KRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-------------------- 569
           K LL +MR+QGL+PN VTYTTL+DIYG+SGRF+DAIECL+                    
Sbjct: 535 KNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINA 594

Query: 570 ----GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625
               GLS+QAV+AFR MR DGLKPS LALNSLINAFGED+RDAEAF VLQYMKEN LKPD
Sbjct: 595 YAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPD 654

Query: 626 VVTYTTLMKALIRVDKFHKVFSSY 649
           VVTYTTLMKALIRV+KF KV S Y
Sbjct: 655 VVTYTTLMKALIRVEKFDKVPSVY 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/673 (69%), Positives = 544/673 (80%), Gaps = 33/673 (4%)

Query: 1   MILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVSTITGITTATASGESSFSSSSFTSK 60
           M+L PP P + RFP+I   CPI   H          + T  +    +   S  S S  + 
Sbjct: 1   MLLFPPPP-ATRFPSITVTCPIPVRHYHHHSQLPPLSATNTSATAIASSFSNLSLSLDNN 59

Query: 61  QNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAES 120
           Q DTE+      D+L+LQ +RYDFTPLLNFLS  +  +++   +SSP+SL+  EF+LAES
Sbjct: 60  QKDTEQ------DILALQSRRYDFTPLLNFLS--NQIKASPNTSSSPTSLDTTEFQLAES 111

Query: 121 YRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLY 180
           YRAVP PLWHSLLK+L SS+SSI LAYAVVSWLQKHNLC+SYELLYSILIHALGRSEKLY
Sbjct: 112 YRAVPGPLWHSLLKSLSSSSSSIGLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLY 171

Query: 181 EAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTR 240
           EAFLLSQ+Q L+PLTYNALI+ACARN+DLEKA+NL+S+MRQDGY  DF+NYSL+IQSL R
Sbjct: 172 EAFLLSQQQALSPLTYNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVR 231

Query: 241 TNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT 300
           +N+IDS +LQKLY EI+CDK+ELD QL ND+IVGFAKAGD +KAM FLGM Q  GLSP+T
Sbjct: 232 SNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRT 291

Query: 301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSE 360
           AT  AVI+AL +SGR IEAEA+FEE+K++GLKP+T+AYN LLKGYVK G LKDAEF+VSE
Sbjct: 292 ATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSE 351

Query: 361 MERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE 420
           MERSGV PDE TYSLLIDAY+NAGRWESARIVLKEME ++  PNS+++SRILA YRDRGE
Sbjct: 352 MERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGE 411

Query: 421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNT 480
           WQ++FQVLKEMK+SGV PD HFYNVMIDTFGK++CL HAM  FD+MLSEGI+PDT+TWNT
Sbjct: 412 WQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNT 471

Query: 481 LIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG 540
           LIDCH K   ++RAEELFEEM E+G+ PC TT+NIMIN  GEQERW+DVK L+GNMR+ G
Sbjct: 472 LIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLG 531

Query: 541 LLPNVVTYTTLVDIYGQSGRFDDAIECLE------------------------GLSDQAV 576
           LLPNVVTYTTL+DIYG+SGRF DAIECLE                        GLS+QAV
Sbjct: 532 LLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAV 591

Query: 577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636
           NAFR+MR D LKPS LALNSLINAFGED+RDAEAF+VL+YMKEN LKPDVVTYTTLMKAL
Sbjct: 592 NAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKAL 651

Query: 637 IRVDKFHKVFSSY 649
           IRVDKF+KV S Y
Sbjct: 652 IRVDKFNKVPSVY 664

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Glycine max]

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/678 (67%), Positives = 525/678 (77%), Gaps = 58/678 (8%)

Query: 1   MILLPPQPLSVRFPA--IHSACPITRHHVIFQPAFSVSTITGITTATASGESSFSSSSFT 58
           M LLPPQ  +  FP+   H        H +  P  S S IT   T               
Sbjct: 1   MNLLPPQLTTTPFPSPSTHRHSHHNNIHFLPPPQSSASPITAKPTIL------------- 47

Query: 59  SKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLA 118
                    EE  DD+LSL  +RYDFTPLL+FLS  SNS       S P+SL+  EF+LA
Sbjct: 48  ---------EEGPDDILSLHNRRYDFTPLLSFLSTTSNS-------SPPTSLDSTEFQLA 91

Query: 119 ESYRAVPAPLWHSLLKNLCSSNSS---IDLAYAVVSWLQKHNLCYSYELLYSILIHALGR 175
           ESYRAVPAPLWH+ LK+LC+S+SS   I LAYAVVSWLQKHNLC+SYELLYSILI+ALGR
Sbjct: 92  ESYRAVPAPLWHAFLKSLCASSSSSSSIALAYAVVSWLQKHNLCFSYELLYSILINALGR 151

Query: 176 SEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVI 235
           SEKLYEAFLLSQRQ LTPLTYNALI ACARN D+EKALNLMSKMR+DGY  DF+NYS +I
Sbjct: 152 SEKLYEAFLLSQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSII 211

Query: 236 QSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG 295
           Q LTR+NKIDS +LQKLY EIE DKIE+DG L+ND+IVGF+KAGD ++AMRFL MAQ  G
Sbjct: 212 QYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNG 271

Query: 296 LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355
           L+PK +T  AVI AL NSGRT EAEA+FEE++E+GL+PRT+AYNALLKGYV+ G LKDAE
Sbjct: 272 LNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAE 331

Query: 356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGY 415
           FVVSEME++GV PDE TYSLLID YA+AGRWESARIVLKEME S+ +PNS+++SRILA Y
Sbjct: 332 FVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANY 391

Query: 416 RDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT 475
           RD+GEWQ++FQVLK+MKSSGV+PD HFYNVMIDTFGKYNCL HAMA F+RMLSEGI PD 
Sbjct: 392 RDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDI 451

Query: 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGN 535
           +TWNTLIDCH K GR+D AEELF EMQ+RGY PC TTYNIMIN +GEQ+RWE V   L  
Sbjct: 452 VTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSK 511

Query: 536 MRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE------------------------GL 571
           M++QGL PN +TYTTLVD+YG+SGRF DAIECLE                        GL
Sbjct: 512 MQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGL 571

Query: 572 SDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTT 631
           S+ AVNAFR+M T+GL PS LALNSLINAFGED+RDAEAFAVLQYMKEN ++PDVVTYTT
Sbjct: 572 SELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTT 631

Query: 632 LMKALIRVDKFHKVFSSY 649
           LMKALIRV+KF KV + Y
Sbjct: 632 LMKALIRVEKFQKVPAVY 649

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/611 (72%), Positives = 509/611 (83%), Gaps = 30/611 (4%)

Query: 69  EDDDDVLSLQKQRYDFTPLLNFLSENSNSE------SASALASSPSSLNRVEFKLAESYR 122
           E+DD+  S   +RYDF+PLL FLS     E      S S   +SP SLN VEF+L ESY 
Sbjct: 69  EEDDEFSSEVHRRYDFSPLLKFLSRFGPVELVLDSESESESEASPESLNPVEFELVESYS 128

Query: 123 AVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEA 182
           AVPAP WHSL+K+LCSS SS+ LAYAVVSWLQKHNLC+SYELLYSILIHALGRSEKLYEA
Sbjct: 129 AVPAPYWHSLIKSLCSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLYEA 188

Query: 183 FLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTN 242
           FLLSQ+Q LTPLTYNALI ACARN+D+EKALNL+S+MRQDGY  DF+NYSLVIQSLTR N
Sbjct: 189 FLLSQKQTLTPLTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLTRCN 248

Query: 243 KIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTAT 302
           KIDS +LQ+LYKEIE DK+ELD QL+ND+I+GFAK+GD S+A++ LGMAQ  GLS KTAT
Sbjct: 249 KIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTAT 308

Query: 303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME 362
             ++I+AL+NSGRT+EAEA+FEEL++SG+KPRTKAYNALLKGYVK G LKDAE +VSEME
Sbjct: 309 LVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEME 368

Query: 363 RSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ 422
           + GV PDEHTYSLLIDAY NAGRWESARIVLKEME    +PNSF++SR+LAGYRDRGEWQ
Sbjct: 369 KRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQ 428

Query: 423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLI 482
           +TFQVLKEMKS GV+PD  FYNV+IDTFGK+NCL HAM  FDRMLSEGIEPD +TWNTLI
Sbjct: 429 KTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI 488

Query: 483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL 542
           DCH K GR+  AEE+FE M+ RG  PC TTYNIMIN  G+QERW+D+KRLLG M++QG+L
Sbjct: 489 DCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGIL 548

Query: 543 PNVVTYTTLVDIYGQSGRFDDAIECLE------------------------GLSDQAVNA 578
           PNVVT+TTLVD+YG+SGRF+DAIECLE                        GLS+QAVNA
Sbjct: 549 PNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNA 608

Query: 579 FRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR 638
           FRVM +DGLKPS LALNSLINAFGED+RDAEAFAVLQYMKENG+KPDVVTYTTLMKALIR
Sbjct: 609 FRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIR 668

Query: 639 VDKFHKVFSSY 649
           VDKF KV   Y
Sbjct: 669 VDKFQKVPGVY 679

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/650 (70%), Positives = 520/650 (80%), Gaps = 30/650 (4%)

Query: 2   ILLPPQPLSVRFPAIHSACPITRHHVIFQPAFSVSTITGITTATASGESSFSSSSFTSKQ 61
           +LL P PL  RFP+ H   P+ R H I QP    +T       TASGE+S     F+   
Sbjct: 72  MLLLPAPLPTRFPSYHFLSPVLRDHRILQPPLLATTSA--AVTTASGEAS----QFSKPL 125

Query: 62  NDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSEN-SNSESASALASSP-SSLNRVEFKLAE 119
           N    E     D+ S+  +RYDFTPLL FLS + S+S+S + + S P +SL+  EF+L E
Sbjct: 126 N----EYGSSGDLNSVPNRRYDFTPLLRFLSNSESDSDSGAEVESPPPTSLDFTEFQLVE 181

Query: 120 SYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKL 179
           SYRAVPAPLWHSLLK+LCS +SSI  AY++V+WL++HNLC+SYELLYSILIHALGRSEKL
Sbjct: 182 SYRAVPAPLWHSLLKSLCSDSSSIGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEKL 241

Query: 180 YEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT 239
           YEAFLLSQRQ LTPLTYNALI ACARNDDLEKALNLMS+MR+DGY  DF+NYS +IQSLT
Sbjct: 242 YEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLT 301

Query: 240 RTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK 299
           RTNK DSS+LQK+Y EIE DKIELDGQLLND+IVGFAK+GD ++AM FL M QG GLSPK
Sbjct: 302 RTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPK 361

Query: 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVS 359
           TAT  AVITAL N+GRT EAEA+FEELKE GL PRT+AYNALLKGYVK G LKDAE +VS
Sbjct: 362 TATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVS 421

Query: 360 EMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG 419
           EMERSG  PDEHTYSLLIDAYANAGRWESARIVLKEME S  +PNS+++SRILA YRDRG
Sbjct: 422 EMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRG 481

Query: 420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN 479
           +WQ++FQVL+EM++SGV PD HFYNVMIDTFGK NCL HA+A FDRM  EG++PD +TWN
Sbjct: 482 KWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWN 541

Query: 480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ 539
           TLIDCH K G +++AEELFE MQE G  PCTTTYNIMIN  GEQERWEDVK LLG M++Q
Sbjct: 542 TLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQ 601

Query: 540 GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLIN 599
           GLL NVVTYTTL                  GLS+QA+NAFRVMR DGLKPS L LNSLIN
Sbjct: 602 GLLANVVTYTTL------------------GLSEQAINAFRVMRADGLKPSVLVLNSLIN 643

Query: 600 AFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSY 649
           AFGED+RDAEAF+VLQYMKEN LKPDVVTYTTLMKALIRV+KF KV + Y
Sbjct: 644 AFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVY 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa] gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/682 (66%), Positives = 539/682 (79%), Gaps = 37/682 (5%)

Query: 2   ILLPPQPLSVRFPAIHSACPI-TRHHVIFQPAFSVSTITGITTATASGESSFSSSSFTSK 60
           +LL PQPL  RFP+I    PI   HH I QP  + +  T   TAT   +SSF    ++ +
Sbjct: 1   MLLFPQPLPNRFPSISITSPIFQHHHRILQPQLAATPTTTALTATNLTDSSFP---YSKR 57

Query: 61  QNDTEEEEEDDDDV--------LSLQKQRYDFTPLLNFLSEN-SNSESASALASSPSSLN 111
            ++T + + +D           L LQ  RYDFTPL+N+LS   S S  + + ++SP+SL+
Sbjct: 58  HHETSQNDIEDYYNDDDDDDDILPLQSLRYDFTPLINYLSNKISTSTDSDSDSASPTSLD 117

Query: 112 RVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIH 171
             EF+LAESYR VP PLWHSLLK+LC+S+SSI LAYAVVSWLQKHNLC+SYELLYSILIH
Sbjct: 118 STEFQLAESYRVVPGPLWHSLLKSLCTSSSSIPLAYAVVSWLQKHNLCFSYELLYSILIH 177

Query: 172 ALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINY 231
           ALG+SEKLYEAFLLSQ+Q LTPLTYNALISACARN+D+EKALNL+ +MR+DGY  D +NY
Sbjct: 178 ALGQSEKLYEAFLLSQKQNLTPLTYNALISACARNNDIEKALNLICRMREDGYPSDLVNY 237

Query: 232 SLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMA 291
           SL+I+SL + N+ +SS+LQK+Y+EI+ DK+E+D QL ND+IVGFAKAGD  KA+ FLG+ 
Sbjct: 238 SLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVV 297

Query: 292 QGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351
           QG GLS KTAT   VI  L N GRT EAEA+FEE++++GL+PRT+AYNALL+GYVK G L
Sbjct: 298 QGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLL 357

Query: 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI 411
           +DAEFVVSEMERSGVLP+E TYSLLIDAY NA RWESARIVLKEME S+ +PN++++SRI
Sbjct: 358 RDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRI 417

Query: 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471
           LA YRD+GEWQ+TFQVL+EM+ SGV PD  FYNV+IDTFGK+NCL HAMA FDRMLSEGI
Sbjct: 418 LASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGI 477

Query: 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531
           EPDTITWNTL+DCH K G++DRAEELFEEM E+GY PC TT+NIMIN  G+QERW+DVK 
Sbjct: 478 EPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKN 537

Query: 532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE---------------------- 569
           LL NMR+QGLLPN VTYTTL+DIYG+SGRFDDAIECL+                      
Sbjct: 538 LLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYA 597

Query: 570 --GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV 627
             GLSDQAV+AF  MR DGLKPS LALNSLINAFG+D+RD EAF VLQYMKEN LKPDVV
Sbjct: 598 QRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVV 657

Query: 628 TYTTLMKALIRVDKFHKVFSSY 649
           TYTTLMKALI V+KF KV S Y
Sbjct: 658 TYTTLMKALILVEKFDKVPSVY 679

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Cucumis sativus] gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Cucumis sativus]

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/686 (66%), Positives = 542/686 (79%), Gaps = 54/686 (7%)

Query: 11  VRFPAIH-SACPITRHHV----IFQPAFSVSTITGITTATASGESSFSSSSFTSKQNDTE 65
            RFPA H S+ P+  HH     I     S S  +   T+++S  + ++SS       D  
Sbjct: 11  TRFPATHLSSPPVFLHHHHNPHIATTHLSFSFFSAPATSSSSLVTCYTSS-------DNL 63

Query: 66  EEEEDDDDVLSLQKQRYDFTPLLNFLSENS-----NSESASAL-------------ASSP 107
           E +  ++D +SLQ +RYDFTPLL+FLS +S     +S+S S +              +SP
Sbjct: 64  EFDVFENDPVSLQSRRYDFTPLLDFLSRSSAYPKFDSDSDSEVEFDSTFNSGSDSDTASP 123

Query: 108 SSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYS 167
           +SL+  EF+LAE+YRAVPAPLWHSLLK+LCSS+SSI L YAVVSWLQ+HNLC+SYELLYS
Sbjct: 124 TSLDPTEFQLAEAYRAVPAPLWHSLLKSLCSSSSSIGLGYAVVSWLQRHNLCFSYELLYS 183

Query: 168 ILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD 227
           ILIHALGRSEKLYEAF+LSQ+Q LTPLTYNALI ACARN+DLEKALNLMS+MRQDG+  D
Sbjct: 184 ILIHALGRSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQDGFQSD 243

Query: 228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRF 287
           FINYSL+IQSLTRTNKID  LLQKLY+EIE DKIELDG LLND+I+GFAKAGD ++A+ F
Sbjct: 244 FINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYF 303

Query: 288 LGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347
           L M Q  GL+PKT+T+ AVI+AL N GRT EAEA+FEE+KE GLKPR KA+NALLKGY +
Sbjct: 304 LSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAR 363

Query: 348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFI 407
            G LK+AE ++SEME+SG+ PDEHTY LL+DAYAN GRWESAR +LK+ME  + +PN+FI
Sbjct: 364 KGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFI 423

Query: 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML 467
           +SRILA YRDRGEWQ+TF+VL+EMK+S V+PD HFYNVMIDTFGK+NCL HAM  +DRML
Sbjct: 424 FSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRML 483

Query: 468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE 527
           SEGIEPD +TWNTLIDCH K G +DRA ELFEEMQERGY PC TTYNIMIN LGEQE+W+
Sbjct: 484 SEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWD 543

Query: 528 DVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE------------------ 569
           +VK LLG M++QGLLPNVVTYTTLVDIYG SGRF+DAI+CLE                  
Sbjct: 544 EVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALI 603

Query: 570 ------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLK 623
                 GLS+QAVNA+RVM +DGL+PS LALNSLINAFGED+RD EAF++LQYMKEN +K
Sbjct: 604 NAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVK 663

Query: 624 PDVVTYTTLMKALIRVDKFHKVFSSY 649
           PDVVTYTTLMKALIRVDKF KV + Y
Sbjct: 664 PDVVTYTTLMKALIRVDKFDKVPAVY 689

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g42310, mitochondrial; Flags: Precursor gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana] gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/675 (68%), Positives = 541/675 (80%), Gaps = 32/675 (4%)

Query: 1   MILLPPQPL-SVRFPAIHSACPITRHHV-IFQPAFSVSTITGITTATASGESSFSSSSFT 58
           M+LL   PL S RF +++       HH   FQP   +S  +  T+A+    S  SSSS+ 
Sbjct: 1   MLLLQQPPLVSTRFHSLYFLTHHHHHHHRFFQPP--ISAFSATTSASLPSPSPSSSSSYF 58

Query: 59  SKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESA----SALASSPSSLNRVE 114
           S  N  +  EE+D++  S   +RYDF+PLL FLS     E A    S   +SP SLN VE
Sbjct: 59  SSWNGLDTNEEEDNEFSSEVHRRYDFSPLLKFLSRFGPVELALDSESESEASPESLNPVE 118

Query: 115 FKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALG 174
           F L ESYRAVPAP WHSL+K+L SS SS+ LAYAVVSWLQKHNLC+SYELLYSILIHALG
Sbjct: 119 FDLVESYRAVPAPYWHSLIKSLTSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALG 178

Query: 175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV 234
           RSEKLYEAFLLSQ+Q LTPLTYNALI ACARN+D+EKALNL++KMRQDGY  DF+NYSLV
Sbjct: 179 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLV 238

Query: 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294
           IQSLTR+NKIDS +L +LYKEIE DK+ELD QL+ND+I+GFAK+GD SKA++ LGMAQ  
Sbjct: 239 IQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQAT 298

Query: 295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA 354
           GLS KTAT  ++I+AL++SGRT+EAEA+FEEL++SG+KPRT+AYNALLKGYVK G LKDA
Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358

Query: 355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414
           E +VSEME+ GV PDEHTYSLLIDAY NAGRWESARIVLKEME    +PNSF++SR+LAG
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418

Query: 415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD 474
           +RDRGEWQ+TFQVLKEMKS GV+PD  FYNV+IDTFGK+NCL HAM  FDRMLSEGIEPD
Sbjct: 419 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 478

Query: 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG 534
            +TWNTLIDCH K GR+  AEE+FE M+ RG  PC TTYNIMIN  G+QERW+D+KRLLG
Sbjct: 479 RVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLG 538

Query: 535 NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE------------------------G 570
            M++QG+LPNVVT+TTLVD+YG+SGRF+DAIECLE                        G
Sbjct: 539 KMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRG 598

Query: 571 LSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYT 630
           LS+QAVNAFRVM +DGLKPS LALNSLINAFGED+RDAEAFAVLQYMKENG+KPDVVTYT
Sbjct: 599 LSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYT 658

Query: 631 TLMKALIRVDKFHKV 645
           TLMKALIRVDKF KV
Sbjct: 659 TLMKALIRVDKFQKV 673

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 501/597 (83%), Gaps = 28/597 (4%)

Query: 81  RYDFTPLLNFLSENSNSESA----SALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNL 136
           RYDF+PLL FLS     E A    S   +SP SLN VEF L ESYRAVPAP WHSL+K+L
Sbjct: 52  RYDFSPLLKFLSRFGPVELALDSESESEASPESLNPVEFDLVESYRAVPAPYWHSLIKSL 111

Query: 137 CSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTY 196
            SS SS+ LAYAVVSWLQKHNLC+SYELLYSILIHALGRSEKLYEAFLLSQ+Q LTPLTY
Sbjct: 112 TSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLYEAFLLSQKQTLTPLTY 171

Query: 197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEI 256
           NALI ACARN+D+EKALNL++KMRQDGY  DF+NYSLVIQSLTR+NKIDS +L +LYKEI
Sbjct: 172 NALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEI 231

Query: 257 ECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316
           E DK+ELD QL+ND+I+GFAK+GD SKA++ LGMAQ  GLS KTAT  ++I+AL++SGRT
Sbjct: 232 ERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRT 291

Query: 317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL 376
           +EAEA+FEEL++SG+KPRT+AYNALLKGYVK G LKDAE +VSEME+ GV PDEHTYSLL
Sbjct: 292 LEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLL 351

Query: 377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436
           IDAY NAGRWESARIVLKEME    +PNSF++SR+LAG+RDRGEWQ+TFQVLKEMKS GV
Sbjct: 352 IDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGV 411

Query: 437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEE 496
           +PD  FYNV+IDTFGK+NCL HAM  FDRMLSEGIEPD +TWNTLIDCH K GR+  AEE
Sbjct: 412 KPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 471

Query: 497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556
           +FE M+ RG  PC TTYNIMIN  G+QERW+D+KRLLG M++QG+LPNVVT+TTLVD+YG
Sbjct: 472 MFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYG 531

Query: 557 QSGRFDDAIECLE------------------------GLSDQAVNAFRVMRTDGLKPSNL 592
           +SGRF+DAIECLE                        GLS+QAVNAFRVM +DGLKPS L
Sbjct: 532 KSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLL 591

Query: 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSY 649
           ALNSLINAFGED+RDAEAFAVLQYMKENG+KPDVVTYTTLMKALIRVDKF KV   Y
Sbjct: 592 ALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVY 648

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	664
TAIR|locus:2157607	709	AT5G42310 [Arabidopsis thalian	0.932	0.873	0.597	1e-196
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.706	0.572	0.260	7.1e-50
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.649	0.696	0.283	5.4e-47
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.679	0.603	0.274	5.9e-47
TAIR|locus:2044430	822	AT2G18940 [Arabidopsis thalian	0.688	0.555	0.267	8.8e-46
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.695	0.632	0.288	1.8e-45
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.725	0.765	0.284	2.1e-45
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.719	0.759	0.279	2.1e-45
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.737	0.777	0.276	1.7e-43
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.701	0.758	0.263	2.2e-43

TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)]

 Score = 1905 (675.7 bits), Expect = 1.0e-196, P = 1.0e-196
 Identities = 385/644 (59%), Positives = 456/644 (70%)

Query:     1 MILLPPQPL-SVRFPAIHSACPITRHHV----IFQPAFSVXXXXXXXXXXXXXXXXXXXX 55
             M+LL   PL S RF   HS   +T HH      FQP  S                     
Sbjct:     1 MLLLQQPPLVSTRF---HSLYFLTHHHHHHHRFFQPPISAFSATTSASLPSPSPSSSSSY 57

Query:    56 XXXXKQNXXXXXXXXXXXVLSLQKQRYDFTXXXXXXXXXXXXXXXXXXXXXXXXXXR--- 112
                   N             S   +RYDF+                              
Sbjct:    58 FSSW--NGLDTNEEEDNEFSSEVHRRYDFSPLLKFLSRFGPVELALDSESESEASPESLN 115

Query:   113 -VEFKLAESYRAVPAPLWHXXXXXXXXXXXXIDLAYAVVSWLQKHNLCYSYELLYSILIH 171
              VEF L ESYRAVPAP WH            + LAYAVVSWLQKHNLC+SYELLYSILIH
Sbjct:   116 PVEFDLVESYRAVPAPYWHSLIKSLTSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIH 175

Query:   172 ALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINY 231
             ALGRSEKLYEAFLLSQ+Q LTPLTYNALI ACARN+D+EKALNL++KMRQDGY  DF+NY
Sbjct:   176 ALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNY 235

Query:   232 SLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMA 291
             SLVIQSLTR+NKIDS +L +LYKEIE DK+ELD QL+ND+I+GFAK+GD SKA++ LGMA
Sbjct:   236 SLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMA 295

Query:   292 QGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL 351
             Q  GLS KTAT  ++I+AL++SGRT+EAEA+FEEL++SG+KPRT+AYNALLKGYVK G L
Sbjct:   296 QATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPL 355

Query:   352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI 411
             KDAE +VSEME+ GV PDEHTYSLLIDAY NAGRWESARIVLKEME    +PNSF++SR+
Sbjct:   356 KDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRL 415

Query:   412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471
             LAG+RDRGEWQ+TFQVLKEMKS GV+PD  FYNV+IDTFGK+NCL HAM  FDRMLSEGI
Sbjct:   416 LAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGI 475

Query:   472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531
             EPD +TWNTLIDCH K GR+  AEE+FE M+ RG  PC TTYNIMIN  G+QERW+D+KR
Sbjct:   476 EPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKR 535

Query:   532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN 591
             LLG M++QG+LPNVVT+TTLVD+YG+SGRF+DAIECLE            M++ GLKPS+
Sbjct:   536 LLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEE-----------MKSVGLKPSS 584

Query:   592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA 635
                N+LINA+ +     +A    + M  +GLKP ++   +L+ A
Sbjct:   585 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINA 628

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 7.1e-50, P = 7.1e-50
 Identities = 127/488 (26%), Positives = 234/488 (47%)

Query:   160 YSYE-LLYSILIHALGRSEKLYEAFLLSQRQRL---TP--LTYNALISACARNDDLEKAL 213
             +SY+ + Y+ L+   G+S +  EA  +     L   +P  +TYN+LISA AR+  L++A+
Sbjct:   310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369

Query:   214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV 273
              L ++M + G   D   Y+ ++    R  K++S++   +++E+     + +    N  I 
Sbjct:   370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM--SIFEEMRNAGCKPNICTFNAFIK 427

Query:   274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP 333
              +   G  ++ M+        GLSP   T+  ++     +G   E   VF+E+K +G  P
Sbjct:   428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 487

Query:   334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVL 393
               + +N L+  Y + G  + A  V   M  +GV PD  TY+ ++ A A  G WE +  VL
Sbjct:   488 ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL 547

Query:   394 KEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY 453
              EME    KPN   Y  +L  Y +  E      + +E+ S  +EP       ++    K 
Sbjct:   548 AEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC 607

Query:   454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTY 513
             + L  A  AF  +   G  PD  T N+++  + +     +A  + + M+ERG+ P   TY
Sbjct:   608 DLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATY 667

Query:   514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD 573
             N ++ +      +   + +L  + A+G+ P++++Y T++  Y ++ R  DA         
Sbjct:   668 NSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI------ 721

Query:   574 QAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM 633
                  F  MR  G+ P  +  N+ I ++  D    EA  V++YM ++G +P+  TY +++
Sbjct:   722 -----FSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776

Query:   634 KALIRVDK 641
                 ++++
Sbjct:   777 DGYCKLNR 784

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 126/444 (28%), Positives = 215/444 (48%)

Query:   195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYK 254
             T   +I+   R   L  A +++ +  + GY  D I +S ++       ++ S  +  + +
Sbjct:   107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRV-SEAVALVDR 165

Query:   255 EIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314
              +E  K   D   ++ +I G    G  S+A+  +      G  P   TY  V+  L  SG
Sbjct:   166 MVEM-KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSG 224

Query:   315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS 374
              +  A  +F +++E  +K     Y+ ++    K G   DA  + +EME  G+  D  TYS
Sbjct:   225 NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYS 284

Query:   375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS 434
              LI    N G+W+    +L+EM   +  P+   +S ++  +   G+     ++  EM + 
Sbjct:   285 SLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR 344

Query:   435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA 494
             G+ PDT  YN +ID F K NCLH A   FD M+S+G EPD +T++ LI+ + K  R D  
Sbjct:   345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 404

Query:   495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI 554
               LF E+  +G  P T TYN ++    +  +    K L   M ++G+ P+VVTY  L+D 
Sbjct:   405 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464

Query:   555 YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVL 614
                +G  + A+E  E +    +       T G+   N+ ++ + NA   D    +A+++ 
Sbjct:   465 LCDNGELNKALEIFEKMQKSRM-------TLGIGIYNIIIHGMCNASKVD----DAWSLF 513

Query:   615 QYMKENGLKPDVVTYTTLMKALIR 638
               + + G+KPDVVTY  ++  L +
Sbjct:   514 CSLSDKGVKPDVVTYNVMIGGLCK 537

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 5.9e-47, P = 5.9e-47
 Identities = 126/459 (27%), Positives = 221/459 (48%)

Query:   194 LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLY 253
             +TYN LI    +   ++    L+  M   G   + I+Y++VI  L R  ++    +  + 
Sbjct:   241 VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE--VSFVL 298

Query:   254 KEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNS 313
              E+      LD    N +I G+ K G+  +A+         GL+P   TY ++I ++  +
Sbjct:   299 TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358

Query:   314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY 373
             G    A    ++++  GL P  + Y  L+ G+ + GY+ +A  V+ EM  +G  P   TY
Sbjct:   359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418

Query:   374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS 433
             + LI+ +   G+ E A  VL++M+     P+   YS +L+G+    +     +V +EM  
Sbjct:   419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE 478

Query:   434 SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR 493
              G++PDT  Y+ +I  F +      A   ++ ML  G+ PD  T+  LI+ +   G  ++
Sbjct:   479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEK 538

Query:   494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553
             A +L  EM E+G  P   TY+++IN L +Q R  + KRLL  +  +  +P+ VTY TL++
Sbjct:   539 ALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598

Query:   554 IYGQSGRFDDAIE-----CLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDA 608
                    F   +      C++G+  +A   F  M     KP   A N +I+         
Sbjct:   599 NCSNI-EFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIR 657

Query:   609 EAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFS 647
             +A+ + + M ++G     VT   L+KAL +  K +++ S
Sbjct:   658 KAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNS 696

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 8.8e-46, P = 8.8e-46
 Identities = 128/478 (26%), Positives = 230/478 (48%)

Query:   168 ILIHALGR-SEKLYEAFLLS----QRQRLTPLTYNALISACARNDDLEKALNLMSKMRQD 222
             I +  LGR S+    A LL     Q   L    Y  ++ A +R    EKA++L  +M++ 
Sbjct:   180 IFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEM 239

Query:   223 GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDAS 282
             G     + Y++++    +  +    +L  L  E+    ++ D    + V+   A+ G   
Sbjct:   240 GPSPTLVTYNVILDVFGKMGRSWRKILGVL-DEMRSKGLKFDEFTCSTVLSACAREGLLR 298

Query:   283 KAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL 342
             +A  F    +  G  P T TY A++     +G   EA +V +E++E+     +  YN L+
Sbjct:   299 EAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV 358

Query:   343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK 402
               YV+ G+ K+A  V+  M + GV+P+  TY+ +IDAY  AG+ + A  +   M+ +   
Sbjct:   359 AAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCV 418

Query:   403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAA 462
             PN+  Y+ +L+    +       ++L +MKS+G  P+   +N M+   G           
Sbjct:   419 PNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRV 478

Query:   463 FDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE 522
             F  M S G EPD  T+NTLI  + +CG    A +++ EM   G+  C TTYN ++N L  
Sbjct:   479 FREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 538

Query:   523 QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL--SDQAVNAFR 580
             +  W   + ++ +M+++G  P   +Y+ ++  Y + G +   IE +E      Q   ++ 
Sbjct:   539 KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYL-GIERIENRIKEGQIFPSWM 597

Query:   581 VMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR 638
             ++RT  L  +N    +L    G ++    AF +    K++G KPD+V + +++    R
Sbjct:   598 LLRT--LLLANFKCRALA---GSER----AFTLF---KKHGYKPDMVIFNSMLSIFTR 643

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.8e-45, P = 1.8e-45
 Identities = 140/485 (28%), Positives = 234/485 (48%)

Query:   161 SYELLYSILIHALGRSEKLY-EAF--LLSQRQRLTPLTYNALISACARNDDLEKALNLMS 217
             SY ++  IL+   G   K+    F  +LS++   T  T+  ++ A    ++++ AL+L+ 
Sbjct:   184 SYNVVLEILVS--GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLR 241

Query:   218 KMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK 277
              M + G   + + Y  +I SL++ N+++ +L  +L +E+       D +  NDVI+G  K
Sbjct:   242 DMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL--QLLEEMFLMGCVPDAETFNDVILGLCK 299

Query:   278 AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKA 337
                 ++A + +      G +P   TY  ++  L   GR   A+ +F  +     KP    
Sbjct:   300 FDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVI 355

Query:   338 YNALLKGYVKMGYLKDAEFVVSEMERS-GVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396
             +N L+ G+V  G L DA+ V+S+M  S G++PD  TY+ LI  Y   G    A  VL +M
Sbjct:   356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415

Query:   397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456
                  KPN + Y+ ++ G+   G+    + VL EM + G++P+T  +N +I  F K + +
Sbjct:   416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRI 475

Query:   457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIM 516
               A+  F  M  +G +PD  T+N+LI    +      A  L  +M   G    T TYN +
Sbjct:   476 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535

Query:   517 INLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV 576
             IN    +   ++ ++L+  M  QG   + +TY +L+      G       C  G  D+A 
Sbjct:   536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI-----KGL------CRAGEVDKAR 584

Query:   577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636
             + F  M  DG  PSN++ N LIN         EA    + M   G  PD+VT+ +L+  L
Sbjct:   585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644

Query:   637 IRVDK 641
              R  +
Sbjct:   645 CRAGR 649

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 145/509 (28%), Positives = 249/509 (48%)

Query:   143 IDLAYAVVSWLQKHNLCYSYELL-YSILIHALGRSEKLYEAFLLSQRQRLT---P--LTY 196
             + LA AV+  + K  L Y   ++  S L++    S+++ EA  L  +  +T   P  +T+
Sbjct:   132 LPLALAVLGKMMK--LGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTF 189

Query:   197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEI 256
             N LI     ++   +A+ L+ +M   G   D + Y +V+  L +    D+ L   L  ++
Sbjct:   190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG--DTDLAFNLLNKM 247

Query:   257 ECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316
             E  K+E    + N +I G  K      A+      +  G+ P   TY+++I+ L N GR 
Sbjct:   248 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query:   317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL 376
              +A  +  ++ E  + P    ++AL+  +VK G L +AE +  EM +  + P   TYS L
Sbjct:   308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query:   377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436
             I+ +    R + A+ + + M   H  P+   Y+ ++ G+      +   +V +EM   G+
Sbjct:   368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427

Query:   437 EPDTHFYNVMID-TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAE 495
               +T  YN++I   F   +C   A   F  M+S+G+ P+ +T+NTL+D   K G+ ++A 
Sbjct:   428 VGNTVTYNILIQGLFQAGDC-DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486

Query:   496 ELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555
              +FE +Q     P   TYNIMI  + +  + ED   L  N+  +G+ P+VV Y T++   
Sbjct:   487 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMI--- 543

Query:   556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFA-VL 614
               SG F     C +G  ++A   F+ M+ DG  P++   N+LI A   D  D EA A ++
Sbjct:   544 --SG-F-----CRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG-DREASAELI 594

Query:   615 QYMKENGLKPDVVTYTTLMKALI--RVDK 641
             + M+  G   D  T   +   L   R+DK
Sbjct:   595 KEMRSCGFAGDASTIGLVTNMLHDGRLDK 623

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 140/501 (27%), Positives = 242/501 (48%)

Query:   143 IDLAYAVVSWLQKHNLCYSYELL-YSILIHALGRSEKLYEAFLLSQRQ---RLTP--LTY 196
             + LA AV+  + K  L Y  +++  S L++     +++ EA  L  +       P  +T+
Sbjct:   131 LPLALAVLGKMMK--LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTF 188

Query:   197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEI 256
             N LI     ++   +A+ L+ +M   G   D   Y  V+  L +   ID +L   L K++
Sbjct:   189 NTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL--SLLKKM 246

Query:   257 ECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316
             E  KIE D  +   +I       + + A+         G+ P   TY ++I  L N GR 
Sbjct:   247 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306

Query:   317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL 376
              +A  +  ++ E  + P    ++AL+  +VK G L +AE +  EM +  + PD  TYS L
Sbjct:   307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366

Query:   377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436
             I+ +    R + A+ + + M      PN   Y+ ++ G+      +   ++ +EM   G+
Sbjct:   367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426

Query:   437 EPDTHFYNVMID-TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAE 495
               +T  YN +I   F   +C   A   F +M+S+G+ PD IT++ L+D   K G+ ++A 
Sbjct:   427 VGNTVTYNTLIQGLFQAGDC-DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 485

Query:   496 ELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY 555
              +FE +Q+    P   TYNIMI  + +  + ED   L  ++  +G+ PNV+ YTT++   
Sbjct:   486 VVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI--- 542

Query:   556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQ 615
               SG F     C +GL ++A   FR M+ DG  P++   N+LI A   D   A +  +++
Sbjct:   543 --SG-F-----CRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 594

Query:   616 YMKENGLKPDVVTYTTLMKAL 636
              M+  G   D  T + ++  L
Sbjct:   595 EMRSCGFVGDASTISMVINML 615

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 142/514 (27%), Positives = 246/514 (47%)

Query:   143 IDLAYAVVSWLQKHNLCYSYELL-YSILIHALGRSEKLYEAF-LLSQRQRL--TP--LTY 196
             + LA AV++ + K  L Y  +++  + L++      ++ +A  L+ Q   +   P   T+
Sbjct:   132 LSLALAVLAKMMK--LGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTF 189

Query:   197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEI 256
             N LI    R++   +A+ L+ +M   G   D + Y +V+  L +   ID +L   L K++
Sbjct:   190 NTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL--SLLKKM 247

Query:   257 ECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT 316
             E  KIE    + N +I       + + A+         G+ P   TY ++I  L N GR 
Sbjct:   248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307

Query:   317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL 376
              +A  +  ++ E  + P    ++AL+  +VK G L +AE +  EM +  + PD  TYS L
Sbjct:   308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367

Query:   377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV 436
             I+ +    R + A+ + + M      PN   Y+ ++ G+          ++ +EM   G+
Sbjct:   368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query:   437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEE 496
               +T  Y  +I  F +     +A   F +M+S+G+ PD +T++ L+D     G+ + A  
Sbjct:   428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487

Query:   497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG 556
             +FE +Q     P   TYNIMI  + +  + ED   L  ++  +G+ PNVVTYTT++    
Sbjct:   488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM---- 543

Query:   557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQY 616
              SG F     C +GL ++A   FR M+ +G  P +   N+LI A   D   A +  +++ 
Sbjct:   544 -SG-F-----CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIRE 596

Query:   617 MKENGLKPDVVTYTTLMKALI--RVDK-FHKVFS 647
             M+      D  T   +   L   R+DK F K+ S
Sbjct:   597 MRSCRFVGDASTIGLVTNMLHDGRLDKSFLKMLS 630

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 128/485 (26%), Positives = 233/485 (48%)

Query:   160 YSYELLYSILIHA-LGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSK 218
             Y  +L  + L+H  L  +  L+   + S R   + + ++ L+SA A+    +  ++   K
Sbjct:    32 YREKLSRNALLHLKLDEAVDLFGEMVKS-RPFPSIVEFSKLLSAIAKMKKFDLVISFGEK 90

Query:   219 MRQDGYHCDFINYSLVIQSLTRTNKIDSSL--LQKLYKEIECDKIELDGQLLNDVIVGFA 276
             M   G   +   Y+++I  L R +++  +L  L K+ K      I     LLN    GF 
Sbjct:    91 MEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLN----GFC 146

Query:   277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK 336
                  S+A+  +     +G  P T T+  ++  L    +  EA A+ E +   G +P   
Sbjct:   147 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 206

Query:   337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM 396
              Y A++ G  K G    A  ++++ME+  +  D   YS +ID+       + A  +  EM
Sbjct:   207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266

Query:   397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL 456
             +    +P+ F YS +++   + G W    ++L +M    + P+   +N +ID F K   L
Sbjct:   267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326

Query:   457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIM 516
               A   FD M+   I+P+ +T+N+LI+      R D A+++F  M  +   P   TYN +
Sbjct:   327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query:   517 INLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV 576
             IN   + ++  D   L  +M  +GL+ N VTYTTL  I+G    F  A +C     D A 
Sbjct:   387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL--IHG----FFQASDC-----DNAQ 435

Query:   577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636
               F+ M +DG+ P+ +  N+L++   ++ +  +A  V +Y++++ ++PD+ TY  + + +
Sbjct:   436 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGM 495

Query:   637 IRVDK 641
              +  K
Sbjct:   496 CKAGK 500

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L844	PP413_ARATH	No assigned EC number	0.6888	0.9683	0.9069	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	664
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-29
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-28
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-25
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-25
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-20
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-15
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-12
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-11
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-10
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-09
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-09
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-08
pfam01535	31	pfam01535, PPR, PPR repeat	4e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-06
pfam01535	31	pfam01535, PPR, PPR repeat	6e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	8e-06
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	8e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	3e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	4e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  124 bits (314), Expect = 1e-29
 Identities = 97/406 (23%), Positives = 183/406 (45%), Gaps = 50/406 (12%)

Query: 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYK 254
           T+N L+S CA + D++ AL ++  +++ G   D   Y+ +I +  ++ K+D   + +++ 
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD--AMFEVFH 496

Query: 255 EIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG 314
           E+    +E +      +I G A+AG  +KA    G+ +   + P    + A+I+A   SG
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556

Query: 315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM--ERSGVLPDEHT 372
                 AV             +A++                 V++EM  E   + PD  T
Sbjct: 557 ------AV------------DRAFD-----------------VLAEMKAETHPIDPDHIT 581

Query: 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432
              L+ A ANAG+ + A+ V + +   + K    +Y+  +     +G+W     +  +MK
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641

Query: 433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD 492
             GV+PD  F++ ++D  G    L  A         +GI+  T+++++L+        + 
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701

Query: 493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV 552
           +A EL+E+++     P  +T N +I  L E  +      +L  M+  GL PN +TY+ L+
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

Query: 553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLI 598
                S R DDA        D  ++     + DG+KP+ +    + 
Sbjct: 762 V---ASERKDDA--------DVGLDLLSQAKEDGIKPNLVMCRCIT 796

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  121 bits (304), Expect = 3e-28
 Identities = 84/350 (24%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 296 LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355
            +P  +T+  +++  ++S     A  V   ++E+GLK   K Y  L+    K G + DA 
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DAM 491

Query: 356 F-VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414
           F V  EM  +GV  + HT+  LID  A AG+   A      M   + KP+  +++ +++ 
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551

Query: 415 YRDRGEWQRTFQVLKEMKSSG--VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE 472
               G   R F VL EMK+    ++PD      ++        +  A   +  +    I+
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611

Query: 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532
                +   ++   + G +D A  ++++M+++G  P    ++ ++++ G     +    +
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671

Query: 533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL 592
           L + R QG+    V+Y++L+     +  +  A+E  E +           ++  L+P+  
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-----------KSIKLRPTVS 720

Query: 593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKF 642
            +N+LI A  E  +  +A  VL  MK  GL P+ +TY+ L+ A  R D  
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  111 bits (278), Expect = 2e-25
 Identities = 98/389 (25%), Positives = 164/389 (42%), Gaps = 31/389 (7%)

Query: 250 QKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMR-FLGMAQGVGLSPKTATYAAVIT 308
           + +Y  +E    E D  ++N V++   K G    A R F  M +         ++  +I 
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA-----SWGTIIG 197

Query: 309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP 368
            L ++G   EA A+F E+ E G     + +  +L+    +G  +  + +   + ++GV+ 
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257

Query: 369 DEHTYSLLIDAYANAGRWESARIVLKEM-EVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427
           D      LID Y+  G  E AR V   M E +    NS     +LAGY   G  +    +
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS-----MLAGYALHGYSEEALCL 312

Query: 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487
             EM+ SGV  D   +++MI  F +   L HA  A   ++  G   D +    L+D + K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372

Query: 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT 547
            GR + A  +F+ M  +       ++N +I   G   R      +   M A+G+ PN VT
Sbjct: 373 WGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428

Query: 548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVM-RTDGLKPSNLALNSLINAFGEDQR 606
           +  ++     S           GLS+Q    F+ M     +KP  +    +I   G +  
Sbjct: 429 FLAVLSACRYS-----------GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477

Query: 607 DAEAFAVLQYMKENGLKPDVVTYTTLMKA 635
             EA+A    ++    KP V  +  L+ A
Sbjct: 478 LDEAYA---MIRRAPFKPTVNMWAALLTA 503

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  111 bits (279), Expect = 3e-25
 Identities = 86/349 (24%), Positives = 166/349 (47%), Gaps = 26/349 (7%)

Query: 295 GLSPKT--ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNA-LLKGYVKMGYL 351
           G+S K     Y      L   GR  +   + E++++ GL    K Y+A   K   K   +
Sbjct: 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV 422

Query: 352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI 411
           K+A F  +++ R+   P   T+++L+   A++   + A  VL+ ++ +  K +  +Y+ +
Sbjct: 423 KEA-FRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478

Query: 412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471
           ++     G+    F+V  EM ++GVE + H +  +ID   +   +  A  A+  M S+ +
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538

Query: 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY--FPCTTTYNIMINLL---GEQERW 526
           +PD + +N LI    + G  DRA ++  EM+   +   P   T   ++      G+ +R 
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598

Query: 527 EDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDG 586
           ++V +++     +G  P V  YT  V+   Q G +D A+   +            M+  G
Sbjct: 599 KEVYQMIHEYNIKG-TPEV--YTIAVNSCSQKGDWDFALSIYDD-----------MKKKG 644

Query: 587 LKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA 635
           +KP  +  ++L++  G      +AF +LQ  ++ G+K   V+Y++LM A
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 94/363 (25%), Positives = 158/363 (43%), Gaps = 39/363 (10%)

Query: 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM 361
           TY A++ A          +AV+  ++ SG +P     N +L  +VK G L DA  +  EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

Query: 362 -ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM--EVSHAKPNSFIYS-RILAGYRD 417
            ER+       ++  +I    +AG +  A  + +EM  + S A+P +F+   R  AG   
Sbjct: 185 PERNLA-----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239

Query: 418 -RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI 476
            R   Q    VLK    +GV  DT     +ID + K   +  A   FD M     E  T+
Sbjct: 240 ARAGQQLHCCVLK----TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTV 291

Query: 477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM 536
            WN+++  +   G  + A  L+ EM++ G      T++IMI +       E  K+    +
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351

Query: 537 RAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE--------------------GLSDQAV 576
              G   ++V  T LVD+Y + GR +DA    +                    G   +AV
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411

Query: 577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN-GLKPDVVTYTTLMKA 635
             F  M  +G+ P+++   ++++A        + + + Q M EN  +KP  + Y  +++ 
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471

Query: 636 LIR 638
           L R
Sbjct: 472 LGR 474

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 9/254 (3%)

Query: 165 LYSILIHALGRSEKLYEAF--LLSQRQRLTPL-----TYNALISACARNDDLEKALNLMS 217
           +++ LI A G+S  +  AF  L   +    P+     T  AL+ ACA    +++A  +  
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603

Query: 218 KMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK 277
            + +         Y++ + S ++    D +L   +Y +++   ++ D    + ++     
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL--SIYDDMKKKGVKPDEVFFSALVDVAGH 661

Query: 278 AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKA 337
           AGD  KA   L  A+  G+   T +Y++++ A SN+    +A  ++E++K   L+P    
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721

Query: 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397
            NAL+    +   L  A  V+SEM+R G+ P+  TYS+L+ A       +    +L + +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781

Query: 398 VSHAKPNSFIYSRI 411
               KPN  +   I
Sbjct: 782 EDGIKPNLVMCRCI 795

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN 518
           PD +T+NTLID + K G+ + A +LF EM++RG  P   TY+I+I+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 74.9 bits (184), Expect = 6e-14
 Identities = 91/448 (20%), Positives = 170/448 (37%), Gaps = 78/448 (17%)

Query: 269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE 328
           N  +      G   +A++ L   Q + +      Y A+           E   V      
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 329 SGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM-ERSGVLPDEHTYSLLIDAYANAGRWE 387
           S      +  NA+L  +V+ G L  A +V  +M ER     D  ++++L+  YA AG ++
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-----DLFSWNVLVGGYAKAGYFD 169

Query: 388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447
            A  +   M  +  +P+ + +  +L       +  R  +V   +   G E D    N +I
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229

Query: 448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF 507
             + K   +  A   FDRM       D I+WN +I  +F+ G      ELF  M+E    
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

Query: 508 PCTTTYNIMIN---LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA 564
           P   T   +I+   LLG++    ++    G +   G   +V    +L+ +Y   G + +A
Sbjct: 286 PDLMTITSVISACELLGDERLGREMH---GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 565 ------IECLE--------------GLSDQAVNAFRVMRTDGLKPSNLAL---------- 594
                 +E  +              GL D+A+  + +M  D + P  + +          
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402

Query: 595 -------------------------NSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTY 629
                                    N+LI  + + +   +A  V   + E     DV+++
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISW 458

Query: 630 TTLMKALIRVDKFHKVFSSYLFFNIYKM 657
           T+++  L R++  ++ F + +FF    +
Sbjct: 459 TSIIAGL-RLN--NRCFEALIFFRQMLL 483

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.6 bits (156), Expect = 4e-13
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN 382
           P    YN L+ GY K G +++A  + +EM++ G+ P+ +TYS+LID    
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 112/511 (21%), Positives = 200/511 (39%), Gaps = 78/511 (15%)

Query: 194 LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQS---------------- 237
           +++NA+IS    N +  + L L   MR+     D +  + VI +                
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313

Query: 238 -LTRTNKID----SSLLQ------------KLYKEIECDKIELDGQLLNDVIVGFAKAGD 280
            +     +D    +SL+Q            K++  +E      D      +I G+ K G 
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGL 369

Query: 281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNA 340
             KA+    + +   +SP   T A+V++A +  G       + E  +  GL       NA
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429

Query: 341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH 400
           L++ Y K   +  A  V   +    V+    +++ +I       R   A I  ++M +  
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQM-LLT 484

Query: 401 AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM 460
            KPNS      L+     G      ++   +  +G+  D    N ++D + +   +++A 
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544

Query: 461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL 520
             F+       E D ++WN L+  +   G+   A ELF  M E G  P   T+   I+LL
Sbjct: 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF---ISLL 596

Query: 521 GEQERWEDVKR---LLGNMRAQ-GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL---SD 573
               R   V +      +M  +  + PN+  Y  +VD+ G++G+  +A   +  +    D
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656

Query: 574 QAV-----NAFRVMRTDGL-----------KPSNLALNSLI-NAFGEDQRDAEAFAVLQY 616
            AV     NA R+ R   L            P+++    L+ N + +  +  E   V + 
Sbjct: 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716

Query: 617 MKENGLKPDV----VTYTTLMKALIRVDKFH 643
           M+ENGL  D     V     + A +  D+ H
Sbjct: 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 72/326 (22%), Positives = 126/326 (38%), Gaps = 49/326 (15%)

Query: 328 ESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE 387
           E GLKPR +     ++  V     KDA    +++ +SGV     +    I+     GR  
Sbjct: 52  EQGLKPRPRLKPEPIRIEVSES--KDARLDDTQIRKSGV-----SLCSQIEKLVACGRHR 104

Query: 388 SARIVLKEMEV--SHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNV 445
            A  + + +E       P S   + + A    +   +    V   ++SSG EPD +  N 
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALK-SIRCVKAVYWHVESSGFEPDQYMMNR 163

Query: 446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG 505
           ++    K   L  A   FD M     E +  +W T+I      G Y  A  LF EM E G
Sbjct: 164 VLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219

Query: 506 YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA----------QGLLPNVVTYTTLVDIY 555
                 T+ +M+               LG+ RA           G++ +      L+D+Y
Sbjct: 220 SDAEPRTFVVMLR----------ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269

Query: 556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQ 615
            + G  +DA    +G+ ++                 +A NS++  +       EA  +  
Sbjct: 270 SKCGDIEDARCVFDGMPEKTT---------------VAWNSMLAGYALHGYSEEALCLYY 314

Query: 616 YMKENGLKPDVVTYTTLMKALIRVDK 641
            M+++G+  D  T++ +++   R+  
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLAL 340

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 55.4 bits (135), Expect = 2e-10
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 470 GIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ 502
           G++PD +T+NTLID   + GR D A EL +EM+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 5e-10
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 46/94 (48%)

Query: 543 PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFG 602
           P+VVTY TL+D Y + G+ +                                        
Sbjct: 1   PDVVTYNTLIDGYCKKGKVE---------------------------------------- 20

Query: 603 EDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKAL 636
                 EA  +   MK+ G+KP+V TY+ L+  L
Sbjct: 21  ------EALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 54.3 bits (132), Expect = 9e-10
 Identities = 14/50 (28%), Positives = 30/50 (60%)

Query: 403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK 452
           P+   Y+ ++ GY  +G+ +   ++  EMK  G++P+ + Y+++ID   K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 92/470 (19%), Positives = 178/470 (37%), Gaps = 48/470 (10%)

Query: 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQS------LTRTNKIDSSL 248
           ++N L+   A+    ++AL L  +M   G   D   +  V+++      L R  ++ + +
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213

Query: 249 LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKA-MRFLGMAQGVGLSPKTATYAAVI 307
           ++  +        ELD  ++N +I  + K GD   A + F  M +   +S     + A+I
Sbjct: 214 VRFGF--------ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS-----WNAMI 260

Query: 308 TALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL 367
           +    +G  +E   +F  ++E  + P      +++     +G  +    +   + ++G  
Sbjct: 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320

Query: 368 PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427
            D    + LI  Y + G W  A  V   ME   A      ++ +++GY   G   +  + 
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS----WTAMISGYEKNGLPDKALET 376

Query: 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487
              M+   V PD      ++        L   +   +    +G+    +  N LI+ + K
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436

Query: 488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT 547
           C   D+A E+F  + E+     T+    +I  L    R  +       M    L PN VT
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTS----IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVT 491

Query: 548 YTTLVDIYGQSGRF-------DDAIECLEGLSDQAVNAF-----RVMRT-------DGLK 588
               +    + G            +    G      NA      R  R        +  +
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551

Query: 589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR 638
              ++ N L+  +    + + A  +   M E+G+ PD VT+ +L+ A  R
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.8 bits (128), Expect = 3e-09
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487
           PD   YN +ID + K   +  A+  F+ M   GI+P+  T++ LID   K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 59.5 bits (144), Expect = 4e-09
 Identities = 95/438 (21%), Positives = 177/438 (40%), Gaps = 48/438 (10%)

Query: 158 LCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMS 217
           +C S   +Y  L    G +EK++     S+ +    +++ A+IS   +N   +KAL   +
Sbjct: 325 VCNSLIQMYLSLGS-WGEAEKVF-----SRMETKDAVSWTAMISGYEKNGLPDKALETYA 378

Query: 218 KMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK 277
            M QD    D I  + V+ +      +D  +  KL++  E   +     + N +I  ++K
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGV--KLHELAERKGLISYVVVANALIEMYSK 436

Query: 278 AGDASKAMR-FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK 336
                KA+  F  + +   +S     + ++I  L  + R  EA   F ++  + LKP + 
Sbjct: 437 CKCIDKALEVFHNIPEKDVIS-----WTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSV 490

Query: 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESA--RIVLK 394
              A L    ++G L   + + + + R+G+  D    + L+D Y   GR   A  +    
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550

Query: 395 EMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN 454
           E +V         ++ +L GY   G+     ++   M  SGV PD   +  ++    +  
Sbjct: 551 EKDVVS-------WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603

Query: 455 CLHHAMAAFDRMLSE-GIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTY 513
            +   +  F  M  +  I P+   +  ++D   + G+   A     +M      P T   
Sbjct: 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM------PITPDP 657

Query: 514 NIMINLLGEQERWEDVKRLLGNMRAQGLL---PNVVTYTTLV-DIYGQSGRFDDAIECLE 569
            +   LL        V   LG + AQ +    PN V Y  L+ ++Y  +G++        
Sbjct: 658 AVWGALLNACRIHRHV--ELGELAAQHIFELDPNSVGYYILLCNLYADAGKW-------- 707

Query: 570 GLSDQAVNAFRVMRTDGL 587
              D+     + MR +GL
Sbjct: 708 ---DEVARVRKTMRENGL 722

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508
           +T+NTLID   K GR + A ELF+EM+ERG  P
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 476 ITWNTLIDCHFKCGRYDRAEELFEEMQERG 505
           +T+N+LI  + K G+ + A ELF+EM+E+G
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.3 bits (119), Expect = 5e-08
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK 347
           P   TY  +I      G+  EA  +F E+K+ G+KP    Y+ L+ G  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSL 238
           TYN LI    +   +E+AL L ++M++ G   +   YS++I  L
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 15/28 (53%), Positives = 22/28 (78%)

Query: 539 QGLLPNVVTYTTLVDIYGQSGRFDDAIE 566
           +GL P+VVTY TL+D   ++GR D+A+E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVE 28

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT 475
           YN +ID   K   +  A+  F  M   GIEPD 
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 195 TYNALISACARNDDLEKALNLMSKMRQDG 223
           TYN+LIS   +   LE+AL L  +M++ G
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCD 227
           TYN LI    +   +E+AL L  +M++ G   D
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP 508
             T+N L+    K G  D A  + EEM+  G  P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 364 SGVLPDEHTYSLLIDAYANAGRWESARIVLKEME 397
            G+ PD  TY+ LID    AGR + A  +L EME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 512 TYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV 545
           TYN +I+ L +  R E+   L   M+ +G+ P+V
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLP 368
           YNALL    K G    A  V+ EM+ SG+ P
Sbjct: 4   YNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE 370
            YN L+ G  K G +++A  +  EM+  G+ PD 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 337 AYNALLKGYVKMGYLKDAEFVVSEMERSGV 366
            YN+L+ GY K G L++A  +  EM+  GV
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 370 EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP 403
             TY+ L+ A A AG  + A  VL+EM+ S  KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 195 TYNALISACARNDDLEKALNLMSKMRQDG 223
           TYNAL+ A A+  D + AL ++ +M+  G
Sbjct: 3   TYNALLLALAKAGDPDLALAVLEEMKASG 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEP 438
           Y+ +L      G+      VL+EMK+SG++P
Sbjct: 4   YNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 406 FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT 440
             Y+ ++ G    G  +   ++ KEMK  G+EPD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 302 TYAAVITALSNSGRTIEAEAVFEELKESGLKP 333
           TY  +I  L  +GR  EA  +F+E+KE G++P
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 372 TYSLLIDAYANAGRWESARIVLKEME 397
           TY+ LI  Y  AG+ E A  + KEM+
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 371 HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS 405
            TY+ LID    AGR E A  + KEM+    +P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKP 333
             TY A++ AL+ +G    A AV EE+K SGLKP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 595 NSLINAFGEDQRDAEAFAVLQYMKENGLKPDV 626
           N+LI+   +  R  EA  + + MKE G++PDV
Sbjct: 4   NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	664
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.84
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.83
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.83
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.79
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
PRK14574	822	hmsH outer membrane protein; Provisional	99.74
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.7
KOG2003	840	consensus TPR repeat-containing protein [General f	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.61
KOG2076	895	consensus RNA polymerase III transcription factor	99.56
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.54
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.51
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.51
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.49
KOG2003	840	consensus TPR repeat-containing protein [General f	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.49
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.45
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.41
KOG1126	638	consensus DNA-binding cell division cycle control	99.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.38
KOG1126	638	consensus DNA-binding cell division cycle control	99.37
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.36
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.33
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.3
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.29
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.29
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.28
PRK12370	553	invasion protein regulator; Provisional	99.25
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.23
PF13041	50	PPR_2: PPR repeat family	99.23
PRK12370	553	invasion protein regulator; Provisional	99.22
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.22
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
PF13041	50	PPR_2: PPR repeat family	99.2
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.19
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.17
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.14
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.14
KOG1129	478	consensus TPR repeat-containing protein [General f	99.14
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.11
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.11
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.1
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.07
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.06
KOG1129	478	consensus TPR repeat-containing protein [General f	99.03
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.02
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.01
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.98
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.97
PRK11189	296	lipoprotein NlpI; Provisional	98.96
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.95
PRK11189	296	lipoprotein NlpI; Provisional	98.92
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.9
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.89
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.87
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.81
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.8
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.78
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.78
PRK04841	903	transcriptional regulator MalT; Provisional	98.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.71
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.7
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.65
PRK04841	903	transcriptional regulator MalT; Provisional	98.65
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.65
KOG1125	579	consensus TPR repeat-containing protein [General f	98.63
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.59
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.59
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.56
PLN02789	320	farnesyltranstransferase	98.53
PF12854	34	PPR_1: PPR repeat	98.52
PF12854	34	PPR_1: PPR repeat	98.52
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.51
KOG1125	579	consensus TPR repeat-containing protein [General f	98.49
PLN02789	320	farnesyltranstransferase	98.48
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.47
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.47
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.44
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.41
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.34
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.33
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.25
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.25
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.24
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.21
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.19
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.18
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.16
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.12
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.1
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.1
PRK15359	144	type III secretion system chaperone protein SscB;	98.09
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.07
PRK15359	144	type III secretion system chaperone protein SscB;	97.99
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.91
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.89
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.88
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.86
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.83
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.81
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.79
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.71
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.7
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.68
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.68
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.64
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.64
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.62
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.61
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.59
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.57
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.51
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.41
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.34
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.25
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.25
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.21
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.2
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.18
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.13
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.12
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.1
KOG0553	304	consensus TPR repeat-containing protein [General f	97.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.06
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.05
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.03
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.0
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.99
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.98
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.93
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.85
KOG0553	304	consensus TPR repeat-containing protein [General f	96.75
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.7
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.51
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.48
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.46
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.45
PF12688	120	TPR_5: Tetratrico peptide repeat	96.45
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.39
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.38
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.34
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.29
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.26
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.23
PF12688	120	TPR_5: Tetratrico peptide repeat	96.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.09
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.07
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.06
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.03
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.02
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.0
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.97
PRK10803	263	tol-pal system protein YbgF; Provisional	95.8
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.66
PRK15331	165	chaperone protein SicA; Provisional	95.63
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.6
KOG3941	406	consensus Intermediate in Toll signal transduction	95.47
PRK10803	263	tol-pal system protein YbgF; Provisional	95.47
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.47
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.43
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.39
PF13371	73	TPR_9: Tetratricopeptide repeat	95.33
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.22
PF13371	73	TPR_9: Tetratricopeptide repeat	95.22
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.14
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.09
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.81
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.74
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.72
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.48
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.43
PRK15331	165	chaperone protein SicA; Provisional	94.35
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.35
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	94.33
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.31
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.27
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.11
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.08
KOG3941	406	consensus Intermediate in Toll signal transduction	94.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.86
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.75
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.62
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.55
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.32
KOG4555	175	consensus TPR repeat-containing protein [Function	93.05
KOG1585	308	consensus Protein required for fusion of vesicles	92.94
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.84
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.5
PRK11906	458	transcriptional regulator; Provisional	92.36
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.35
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.08
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.03
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.77
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.77
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.43
PF13428	44	TPR_14: Tetratricopeptide repeat	91.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.28
KOG4555	175	consensus TPR repeat-containing protein [Function	91.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.2
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.91
PRK11619	644	lytic murein transglycosylase; Provisional	90.74
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.69
KOG1585	308	consensus Protein required for fusion of vesicles	90.53
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	90.48
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	90.29
PF13428	44	TPR_14: Tetratricopeptide repeat	90.19
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.05
COG0457	291	NrfG FOG: TPR repeat [General function prediction	90.03
PRK11906	458	transcriptional regulator; Provisional	89.91
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	89.91
PF13512	142	TPR_18: Tetratricopeptide repeat	89.9
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.83
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.67
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.01
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.98
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.7
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.64
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.11
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.76
PF13431	34	TPR_17: Tetratricopeptide repeat	87.48
PF13512	142	TPR_18: Tetratricopeptide repeat	87.13
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	86.98
PF13431	34	TPR_17: Tetratricopeptide repeat	86.94
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.92
PF09477	116	Type_III_YscG: Bacterial type II secretion system	86.88
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.27
PF13929	292	mRNA_stabil: mRNA stabilisation	86.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.95
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.73
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.43
KOG2471	696	consensus TPR repeat-containing protein [General f	85.37
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	84.96
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.46
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	83.86
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.77
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.26
KOG4570	418	consensus Uncharacterized conserved protein [Funct	82.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.82
PRK09687	280	putative lyase; Provisional	82.05
KOG1550	552	consensus Extracellular protein SEL-1 and related	81.89
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	81.87
COG3947	361	Response regulator containing CheY-like receiver a	81.86
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	81.83
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	81.32
KOG1586	288	consensus Protein required for fusion of vesicles	81.31
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	80.81
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.62

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-69  Score=608.28  Aligned_cols=530  Identities=18%  Similarity=0.318  Sum_probs=493.5

Q ss_pred             ChhhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHH
Q 006012          125 PAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISAC  203 (664)
Q Consensus       125 ~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~  203 (664)
                      +.+.+..++..+| +.|+++.|.++|++|.+.|..+.+...++.++..|.+.|.+.+|+.+ ..+..||..+|+.||.+|
T Consensus       369 ~~~~~~~~y~~l~-r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~  447 (1060)
T PLN03218        369 KSPEYIDAYNRLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC  447 (1060)
T ss_pred             CchHHHHHHHHHH-HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4466777777777 56899999999999999997667778889999999999999999988 555669999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          204 ARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASK  283 (664)
Q Consensus       204 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~  283 (664)
                      ++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.  +.++|++|.+.|+.||..+||.+|.+|++.|++++
T Consensus       448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~--A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999999999999999999999999855  56999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          284 AMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE--SGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM  361 (664)
Q Consensus       284 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  361 (664)
                      |.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+  .|+.||..+|+.||.+|++.|++++|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986  678999999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          362 ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH  441 (664)
Q Consensus       362 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  441 (664)
                      .+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~  765 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE  765 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHh--------hhHHHHHHHHHHHHHCCCCC
Q 006012          522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG----QSGRFDDAIECLE--------GLSDQAVNAFRVMRTDGLKP  589 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~--------~~~~~a~~~~~~m~~~g~~p  589 (664)
                      +.|++++|.+++.+|.+.|+.||..+|++++..|.    ++++..++...|+        +..++|..+|++|.+.|+.|
T Consensus       766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P  845 (1060)
T PLN03218        766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP  845 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence            99999999999999999999999999999997654    3333333333232        34578999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHhhhhh
Q 006012          590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKMLS  659 (664)
Q Consensus       590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~~~~  659 (664)
                      |..||+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+.  .++|+.+++.+...+..+
T Consensus       846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p  913 (1060)
T PLN03218        846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP  913 (1060)
T ss_pred             CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence            99999999998889999999999999998888999999999999998543  368999999888877644

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.7e-70  Score=623.48  Aligned_cols=553  Identities=18%  Similarity=0.259  Sum_probs=456.7

Q ss_pred             ccCCccchhhHHHhhcCCCccchhhccCCCCchhhHHHHHHhhhcCCChhhHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 006012           78 QKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHN  157 (664)
Q Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~  157 (664)
                      .++..+++..+..++..|..++|..+..          ++.+.+.......+.. +...|...+..+.|.++|..+.+.+
T Consensus        48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~----------~m~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~  116 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQLEQALKLLE----------SMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSRVCSRALSSH  116 (857)
T ss_pred             ccchhhHHHHHHHHHhCCCHHHHHHHHH----------HHHhcCCCCChhHHHH-HHHHHhhCCCHHHHHHHHHHHHHcC
Confidence            4455667788999999999877743322          2222221222233344 4456778888999999999999988


Q ss_pred             CCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006012          158 LCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ  236 (664)
Q Consensus       158 ~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  236 (664)
                      . ..+..++|.|+.+|+++|++++|+.+ ..+.++|..+||+||.+|++.|++++|+++|++|.+.|+.||.+||+.+++
T Consensus       117 ~-~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~  195 (857)
T PLN03077        117 P-SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR  195 (857)
T ss_pred             C-CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence            5 45578999999999999999999998 777889999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 006012          237 SLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT  316 (664)
Q Consensus       237 ~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  316 (664)
                      +|++.++..  .+++++..+.+.|+.+|..++|+||.+|+++|++++|.++|++|.    .||..+||++|.+|++.|+.
T Consensus       196 ~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~  269 (857)
T PLN03077        196 TCGGIPDLA--RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGEC  269 (857)
T ss_pred             HhCCccchh--hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCH
Confidence            999888774  456899999999999999999999999999999999999998886    47888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       317 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      ++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus       270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m  349 (857)
T PLN03077        270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM  349 (857)
T ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888887


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI  476 (664)
Q Consensus       397 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  476 (664)
                      .    .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.++..
T Consensus       350 ~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~  425 (857)
T PLN03077        350 E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV  425 (857)
T ss_pred             C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence            5    467777888888888888888888888888777777888888777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHC------------------------------CCCCCHHHHHHHHHHHHhcCCH
Q 006012          477 TWNTLIDCHFKCGRYDRAEELFEEMQER------------------------------GYFPCTTTYNIMINLLGEQERW  526 (664)
Q Consensus       477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------~~~p~~~t~~~ll~~~~~~g~~  526 (664)
                      +||.||.+|+++|++++|.++|++|.+.                              ++.||..||+.++.+|++.|..
T Consensus       426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l  505 (857)
T PLN03077        426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL  505 (857)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence            7777777777777777777766665432                              3456666666666666666666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-------------------hhHHHHHHHHHHHHHCCC
Q 006012          527 EDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-------------------GLSDQAVNAFRVMRTDGL  587 (664)
Q Consensus       527 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-------------------~~~~~a~~~~~~m~~~g~  587 (664)
                      +.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+                   |..++|+++|++|.+.|+
T Consensus       506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~  585 (857)
T PLN03077        506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV  585 (857)
T ss_pred             HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            6666666666666666666677778888899999999988765                   777899999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012          588 KPSNLALNSLINAFGEDQRDAEAFAVLQYMK-ENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF  652 (664)
Q Consensus       588 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~  652 (664)
                      .||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.++++.+
T Consensus       586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            9999999999999999999999999999999 6899999999999999999999999999999865

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.6e-66  Score=594.37  Aligned_cols=494  Identities=17%  Similarity=0.231  Sum_probs=453.1

Q ss_pred             hhhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHH
Q 006012          126 APLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACA  204 (664)
Q Consensus       126 ~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~  204 (664)
                      +......+...|...+++..+.++|..+.+.|. .++..++|.|+.+|+++|++++|..+ ..+..+|.++||+||.+|+
T Consensus       186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~  264 (857)
T PLN03077        186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF-ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF  264 (857)
T ss_pred             ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC-CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence            333333334445566777778888888888775 45578899999999999999999998 6777899999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012          205 RNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKA  284 (664)
Q Consensus       205 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A  284 (664)
                      +.|++++|+++|++|.+.|+.||.+||+.++.+|++.|+.+  .+++++..|.+.|+.||..+||.||.+|++.|++++|
T Consensus       265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~--~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A  342 (857)
T PLN03077        265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER--LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA  342 (857)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999999999999999884  4679999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          285 MRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       285 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      .++|++|.    .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.
T Consensus       343 ~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~  418 (857)
T PLN03077        343 EKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK  418 (857)
T ss_pred             HHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence            99999996    58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          365 GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYN  444 (664)
Q Consensus       365 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  444 (664)
                      |+.|+..+|++||++|++.|++++|.++|++|.    .+|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+
T Consensus       419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~  493 (857)
T PLN03077        419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI  493 (857)
T ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence            999999999999999999999999999999996    46888999999999999999999999999986 5899999999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE  524 (664)
Q Consensus       445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g  524 (664)
                      .++.+|++.|+++.+.+++..+.+.|+.++..++|+||++|+++|++++|+++|+++     .||..+||+++.+|++.|
T Consensus       494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G  568 (857)
T PLN03077        494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHG  568 (857)
T ss_pred             HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999987     578999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHh
Q 006012          525 RWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMR-TDGLKPSNLALNSLINAFGE  603 (664)
Q Consensus       525 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~  603 (664)
                      +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++           |+.|. +.|+.|+..+|++++++|++
T Consensus       569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~-----------f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY-----------FHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH-----------HHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988887776           67787 56899999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       604 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      .|++++|.+++++|   ++.||..+|.+|+.+|...|+.+.++.+.+
T Consensus       638 ~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~  681 (857)
T PLN03077        638 AGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQ  681 (857)
T ss_pred             CCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            99999999999888   378999999999988887777777666554

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.9e-65  Score=574.04  Aligned_cols=476  Identities=19%  Similarity=0.325  Sum_probs=448.6

Q ss_pred             chHHHHHHHHHHHcccCCHHHHHHh-hC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 006012          161 SYELLYSILIHALGRSEKLYEAFLL-SQ-----RQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV  234 (664)
Q Consensus       161 ~~~~~~~~li~~~~~~~~~~~A~~~-~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  234 (664)
                      .+...|..++..|++.|++.+|+.+ ..     ..+++...++.++.+|.+.|.+++|+.+|+.|..    ||..+|+.+
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L  443 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML  443 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence            3456788888899999999999988 11     1345677888999999999999999999999974    999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006012          235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG  314 (664)
Q Consensus       235 l~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  314 (664)
                      +.+|++.|+++.  +.++|+.|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus       444 L~a~~k~g~~e~--A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        444 MSVCASSQDIDG--ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHHHHhCcCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence            999999999855  569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012          315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER--SGVLPDEHTYSLLIDAYANAGRWESARIV  392 (664)
Q Consensus       315 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~l  392 (664)
                      ++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+  .|+.||..+|+++|.+|++.|++++|.++
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986  68899999999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 006012          393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE  472 (664)
Q Consensus       393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  472 (664)
                      |++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~  681 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK  681 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV  552 (664)
Q Consensus       473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  552 (664)
                      |+..+|+.||.+|+++|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++++
T Consensus       682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------------------cCCHHH
Q 006012          553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE-----------------------DQRDAE  609 (664)
Q Consensus       553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-----------------------~g~~~~  609 (664)
                      .+|++.|++++|.++           |.+|.+.|+.||..+|++++..|.+                       .++.++
T Consensus       762 ~a~~k~G~le~A~~l-----------~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~  830 (1060)
T PLN03218        762 VASERKDDADVGLDL-----------LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW  830 (1060)
T ss_pred             HHHHHCCCHHHHHHH-----------HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence            999999999888776           7889999999999999999976542                       134578


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012          610 AFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFN  653 (664)
Q Consensus       610 A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~  653 (664)
                      |..+|++|++.|+.||..||..++.++++.+..+.+...++.+.
T Consensus       831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~  874 (1060)
T PLN03218        831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG  874 (1060)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence            99999999999999999999999998889999998888887554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.7e-61  Score=538.49  Aligned_cols=513  Identities=16%  Similarity=0.248  Sum_probs=450.1

Q ss_pred             cccCCccchhhHHHhhcCCCccchhhccCCCCchhhHHHHHHhhhcC-CChhhHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 006012           77 LQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRA-VPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQK  155 (664)
Q Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~  155 (664)
                      ...+...+...+..+...|..++|..+..          .+....+. .+...|..++. .|...++.+.|.++|..+.+
T Consensus        83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~----------~m~~~~~~~~~~~t~~~ll~-a~~~~~~~~~a~~l~~~m~~  151 (697)
T PLN03081         83 IRKSGVSLCSQIEKLVACGRHREALELFE----------ILEAGCPFTLPASTYDALVE-ACIALKSIRCVKAVYWHVES  151 (697)
T ss_pred             CCCCceeHHHHHHHHHcCCCHHHHHHHHH----------HHHhcCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHH
Confidence            33455678889999999998877744322          22222222 22334555555 55577899999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 006012          156 HNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV  234 (664)
Q Consensus       156 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  234 (664)
                      .|. .++..+++.|+++|+++|++++|..+ ..+..+|.++||+||.+|++.|++++|+++|++|.+.|+.|+..+|+.+
T Consensus       152 ~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l  230 (697)
T PLN03081        152 SGF-EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM  230 (697)
T ss_pred             hCC-CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence            996 45689999999999999999999998 6677899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006012          235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG  314 (664)
Q Consensus       235 l~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  314 (664)
                      +.+|++.|..  ..+++++..+.+.|+.+|..+||+||++|+++|++++|.++|+.|.    ++|.++||++|.+|++.|
T Consensus       231 l~a~~~~~~~--~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g  304 (697)
T PLN03081        231 LRASAGLGSA--RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG  304 (697)
T ss_pred             HHHHhcCCcH--HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCC
Confidence            9999999987  4567999999999999999999999999999999999999999996    479999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLK  394 (664)
Q Consensus       315 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~  394 (664)
                      +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|+
T Consensus       305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~  384 (697)
T PLN03081        305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD  384 (697)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCC
Q 006012          395 EMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS-EGIEP  473 (664)
Q Consensus       395 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~  473 (664)
                      +|.    .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|
T Consensus       385 ~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p  460 (697)
T PLN03081        385 RMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP  460 (697)
T ss_pred             hCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence            996    4799999999999999999999999999999999999999999999999999999999999999986 69999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLV  552 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li  552 (664)
                      +..+|+.++++|++.|++++|.+++++|   ++.|+..+|++++.+|+..|+++.|..+++++.+.  .| +..+|..|+
T Consensus       461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~  535 (697)
T PLN03081        461 RAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLL  535 (697)
T ss_pred             CccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHH
Confidence            9999999999999999999999999876   56899999999999999999999999999999764  45 467999999


Q ss_pred             HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHH-------HHHHhc----CCHHHHHHHHHHHHHC
Q 006012          553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLI-------NAFGED----QRDAEAFAVLQYMKEN  620 (664)
Q Consensus       553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li-------~~~~~~----g~~~~A~~~~~~m~~~  620 (664)
                      ++|++.|++++|.++           ++.|.+.|++... .+|..+.       .+-..+    .-++...++..+|.+.
T Consensus       536 ~~y~~~G~~~~A~~v-----------~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~  604 (697)
T PLN03081        536 NLYNSSGRQAEAAKV-----------VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY  604 (697)
T ss_pred             HHHHhCCCHHHHHHH-----------HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHc
Confidence            999999999998877           6788888876432 2332211       000011    1235566788889999


Q ss_pred             CCCCCHH
Q 006012          621 GLKPDVV  627 (664)
Q Consensus       621 g~~p~~~  627 (664)
                      |+.||..
T Consensus       605 gy~~~~~  611 (697)
T PLN03081        605 GYVAEEN  611 (697)
T ss_pred             CCCCCcc
Confidence            9999853

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.5e-60  Score=530.75  Aligned_cols=470  Identities=19%  Similarity=0.249  Sum_probs=412.2

Q ss_pred             hhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006012          127 PLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARN  206 (664)
Q Consensus       127 ~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~  206 (664)
                      ..|..++..++ ..+++++|+++|.|+...+.                              ..+|..+|++++.+|++.
T Consensus        88 ~~~~~~i~~l~-~~g~~~~Al~~f~~m~~~~~------------------------------~~~~~~t~~~ll~a~~~~  136 (697)
T PLN03081         88 VSLCSQIEKLV-ACGRHREALELFEILEAGCP------------------------------FTLPASTYDALVEACIAL  136 (697)
T ss_pred             eeHHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------------------------------CCCCHHHHHHHHHHHHhC
Confidence            35666666655 34566677777776654431                              235777899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          207 DDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMR  286 (664)
Q Consensus       207 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~  286 (664)
                      ++++.|.+++..|.+.|+.||..+|+.++..|++.|+++.  |.++|++|.    .||..+||.+|.+|++.|++++|++
T Consensus       137 ~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~--A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~  210 (697)
T PLN03081        137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID--ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFA  210 (697)
T ss_pred             CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH--HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHH
Confidence            9999999999999999999999999999999999998854  568888886    4788999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          287 FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV  366 (664)
Q Consensus       287 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  366 (664)
                      +|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||.||.+|++.|++++|.++|++|.+   
T Consensus       211 lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---  287 (697)
T PLN03081        211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---  287 (697)
T ss_pred             HHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999864   


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          367 LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVM  446 (664)
Q Consensus       367 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  446 (664)
                       +|.++||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|
T Consensus       288 -~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L  366 (697)
T PLN03081        288 -KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL  366 (697)
T ss_pred             -CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence             5889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006012          447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW  526 (664)
Q Consensus       447 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~  526 (664)
                      +++|++.|++++|.++|++|.    .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus       367 i~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~  442 (697)
T PLN03081        367 VDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS  442 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence            999999999999999999986    4788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          527 EDVKRLLGNMRA-QGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQ  605 (664)
Q Consensus       527 ~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  605 (664)
                      ++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++           +   .+..|+..+|++|+.+|..+|
T Consensus       443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~-----------~---~~~~p~~~~~~~Ll~a~~~~g  508 (697)
T PLN03081        443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR-----------R---APFKPTVNMWAALLTACRIHK  508 (697)
T ss_pred             HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH-----------H---CCCCCCHHHHHHHHHHHHHcC
Confidence            999999999986 5899999999999999999999998877632           2   357899999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHhhh
Q 006012          606 RDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYLFFNIYKM  657 (664)
Q Consensus       606 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~~  657 (664)
                      +++.|..+++++.+  +.| +..+|..|++.|++.|++++|.++++.|...+.
T Consensus       509 ~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        509 NLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             CcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99999999998875  556 467899999999999999999999998876553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.2e-28  Score=287.80  Aligned_cols=496  Identities=13%  Similarity=0.044  Sum_probs=294.6

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN  214 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~  214 (664)
                      ..++++.|..++..+.+.+  +.+...+..+...+...|++++|...    ....+.+...+..++..+.+.|++++|+.
T Consensus       375 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  452 (899)
T TIGR02917       375 ALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALA  452 (899)
T ss_pred             HCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence            3344445555554444433  23333444444444444444444433    11112222333444444445555555555


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012          215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV  294 (664)
Q Consensus       215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  294 (664)
                      +++++... .+.+..++..+...+...|+.+.  +...|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.
T Consensus       453 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  528 (899)
T TIGR02917       453 AAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK--AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI  528 (899)
T ss_pred             HHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH--HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            55554443 13344455555555555555533  335555554432 233445555555556666666666666655544


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS  374 (664)
Q Consensus       295 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  374 (664)
                      + +.+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..+.+.|++++|..+++.+.+.. ..+..+|.
T Consensus       529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  605 (899)
T TIGR02917       529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL  605 (899)
T ss_pred             C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence            3 33455555666666666666666666666555432 244555556666666666666666666665543 23555666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006012          375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN  454 (664)
Q Consensus       375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  454 (664)
                      .+...|.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+.. +.+..++..+...+...|
T Consensus       606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  683 (899)
T TIGR02917       606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK  683 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence            66666666666666666666665543 3345556666666666666666666666665543 334566666666666666


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          455 CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG  534 (664)
Q Consensus       455 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  534 (664)
                      ++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+.+...+  |+..++..+..++.+.|++++|.+.+.
T Consensus       684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (899)
T TIGR02917       684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE  760 (899)
T ss_pred             CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6666666666666554 3455556666666667777777777777766654  333555666666777777777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCCCH
Q 006012          535 NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKPSN  591 (664)
Q Consensus       535 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p~~  591 (664)
                      ++.+.. ..+..++..+...|.+.|++++|.+.++                       +. .+|+..++++.... .-+.
T Consensus       761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~  837 (899)
T TIGR02917       761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIP  837 (899)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCc
Confidence            766653 2356666777777777777777776665                       22 34566666665532 1234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012          592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF  652 (664)
Q Consensus       592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~  652 (664)
                      ..+..+..++...|++++|.++++++++.+ +.+..++..++.++.+.|++++|.++++.+
T Consensus       838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  897 (899)
T TIGR02917       838 AILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKL  897 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            567788888899999999999999999865 338889999999999999999999988854

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=9.6e-28  Score=280.04  Aligned_cols=498  Identities=14%  Similarity=0.083  Sum_probs=317.9

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEK  211 (664)
Q Consensus       136 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~  211 (664)
                      .+...++++.|...+..+.+..  |.+...+..+...+.+.|++++|...    ....+.+...|+.+...+.+.|++++
T Consensus       304 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  381 (899)
T TIGR02917       304 SEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK  381 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence            3445677777777777777665  44556666777777777777777665    33344556677777777777777777


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCC-------------------------------
Q 006012          212 ALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDK-------------------------------  260 (664)
Q Consensus       212 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~-------------------------------  260 (664)
                      |.+.|+++.+.+ +.+...+..+...+...|+.+.+  ...++.+.+..                               
T Consensus       382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A--~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  458 (899)
T TIGR02917       382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEA--IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE  458 (899)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHH--HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            777777776643 22334444555555555555332  23444333322                               


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006012          261 --IELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY  338 (664)
Q Consensus       261 --~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~  338 (664)
                        .+.+..+++.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+. .+..++
T Consensus       459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~  536 (899)
T TIGR02917       459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAI  536 (899)
T ss_pred             HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHH
Confidence              23345556666666666666666666666665533 33445555566666666666666666666655432 245566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006012          339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR  418 (664)
Q Consensus       339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~  418 (664)
                      ..+...+.+.|+.++|..+++++.+.+. .+...+..++..|.+.|++++|..+++.+.... +.+...|..+..++...
T Consensus       537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  614 (899)
T TIGR02917       537 LALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA  614 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence            6666666666666666666666655432 245556666666777777777777777666543 44566677777777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012          419 GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELF  498 (664)
Q Consensus       419 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  498 (664)
                      |++++|...++.+.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|.+++
T Consensus       615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  692 (899)
T TIGR02917       615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA  692 (899)
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777777766543 3455666667777777777777777777776543 334666777777777777777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh---------
Q 006012          499 EEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE---------  569 (664)
Q Consensus       499 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---------  569 (664)
                      +.+.+.+ +.+...+..+...+...|++++|.+.+.++...+  |+..++..++.++.+.|++++|.+.++         
T Consensus       693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  769 (899)
T TIGR02917       693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND  769 (899)
T ss_pred             HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            7777665 4556667777777777777777777777777653  444666677777777777777776654         


Q ss_pred             --------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          570 --------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA  635 (664)
Q Consensus       570 --------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a  635 (664)
                                    |..++|...|+++.... ..+...++.+...+...|+ .+|+.+++++.+. .+-+..++..++.+
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~  846 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWL  846 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHH
Confidence                          44556667777766643 2345566777777777777 6677777777663 12345566667777


Q ss_pred             HHhcCCHhHHHHHHH
Q 006012          636 LIRVDKFHKVFSSYL  650 (664)
Q Consensus       636 ~~~~g~~~~A~~~~~  650 (664)
                      +.+.|++++|.+.|+
T Consensus       847 ~~~~g~~~~A~~~~~  861 (899)
T TIGR02917       847 LVEKGEADRALPLLR  861 (899)
T ss_pred             HHHcCCHHHHHHHHH
Confidence            777777777777776

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=5e-20  Score=216.60  Aligned_cols=501  Identities=14%  Similarity=0.026  Sum_probs=268.6

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHH--------------
Q 006012          135 NLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTY--------------  196 (664)
Q Consensus       135 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~--------------  196 (664)
                      +++...++.+.|.+.+.++....  |.++.++..++..+.+.|+.++|...    ....+.++..+              
T Consensus        36 ~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~  113 (1157)
T PRK11447         36 RLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR  113 (1157)
T ss_pred             HHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence            34445566777777777776655  55666677777777777777777654    22333333322              


Q ss_pred             --HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006012          197 --NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT-RTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV  273 (664)
Q Consensus       197 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~  273 (664)
                        ..+...+.+.|++++|+..|+++.+.+ +|+...-........ ..|+.  ..+...++.+.+.. +-+...+..+..
T Consensus       114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~--~~A~~~L~~ll~~~-P~~~~~~~~LA~  189 (1157)
T PRK11447        114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQR--PEAINQLQRLNADY-PGNTGLRNTLAL  189 (1157)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccH--HHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence              223345666777777777777776543 222211001111111 22443  23446666666543 345556666677


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCC------------------CCC-HHHH-------------------------------
Q 006012          274 GFAKAGDASKAMRFLGMAQGVGL------------------SPK-TATY-------------------------------  303 (664)
Q Consensus       274 ~~~~~g~~~~A~~~~~~~~~~g~------------------~~~-~~~~-------------------------------  303 (664)
                      .+...|+.++|++.++++.+...                  .+. ...+                               
T Consensus       190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~  269 (1157)
T PRK11447        190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA  269 (1157)
T ss_pred             HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence            77777777777777766543210                  000 0000                               


Q ss_pred             ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH-----
Q 006012          304 ---AAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-DEHTYS-----  374 (664)
Q Consensus       304 ---~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~-----  374 (664)
                         ......+...|++++|+..|++..+... -+...+..+...+.+.|++++|...|++..+..... +...|.     
T Consensus       270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~  348 (1157)
T PRK11447        270 FRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV  348 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence               0112344556777777777777666432 256666677777777777777777777766543221 111111     


Q ss_pred             -------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 006012          375 -------LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVM-  446 (664)
Q Consensus       375 -------~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-  446 (664)
                             .....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+ 
T Consensus       349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~  426 (1157)
T PRK11447        349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA  426 (1157)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence                   12334556677777777777776654 3345556666677777777777777777766542 2222233222 


Q ss_pred             -----------------------------------------HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          447 -----------------------------------------IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH  485 (664)
Q Consensus       447 -----------------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  485 (664)
                                                               ...+...|++++|++.+++.++.. +-+...+..+...|
T Consensus       427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~  505 (1157)
T PRK11447        427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL  505 (1157)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence                                                     233445666777777777666553 22445556666667


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHH
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV---------VTYTTLVDIYG  556 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---------~~~~~li~~~~  556 (664)
                      .+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.         ..+..+...+.
T Consensus       506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~  584 (1157)
T PRK11447        506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR  584 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence            77777777777777766543 223333333333344455555555554443221111110         01112233444


Q ss_pred             hcCChHHHHHHHh-------------------hhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012          557 QSGRFDDAIECLE-------------------GLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQY  616 (664)
Q Consensus       557 ~~g~~~~A~~~~~-------------------~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  616 (664)
                      ..|+.++|+.+++                   +..++|+..|++....  .| +...+..++..|...|++++|++.++.
T Consensus       585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5555555554443                   3444555555555543  23 344555666666666666666666665


Q ss_pred             HHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          617 MKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       617 m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      ..+  ..| +..++..+..++.+.|++++|.++|+
T Consensus       663 ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  695 (1157)
T PRK11447        663 LPA--TANDSLNTQRRVALAWAALGDTAAAQRTFN  695 (1157)
T ss_pred             Hhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            554  222 33445555566666666666666666

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=2.9e-19  Score=210.15  Aligned_cols=361  Identities=11%  Similarity=0.054  Sum_probs=245.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH------------
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RTKAY------------  338 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~------------  338 (664)
                      ...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....+            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            445667788888888888888754 3467788888888888888888888888887653321 11111            


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH--------
Q 006012          339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR--------  410 (664)
Q Consensus       339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~--------  410 (664)
                      ......+.+.|++++|...++++.+.... +...+..+...|...|++++|++.|++..+... .+...+..        
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence            12234566788888888888888876432 566777788888888888888888888876532 22222222        


Q ss_pred             ----------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012          411 ----------------------------------ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL  456 (664)
Q Consensus       411 ----------------------------------ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  456 (664)
                                                        +...+...|++++|++.+++..+.. +-+...+..+...|.+.|++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence                                              2334556789999999999988764 34567778888899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------------------------
Q 006012          457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-------------------------------  505 (664)
Q Consensus       457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------------------  505 (664)
                      ++|...++++.+.. +.+...+..+...+.+.|+.++|+..++.+....                               
T Consensus       512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            99999999988753 2234444334444555666666666655443211                               


Q ss_pred             --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHH
Q 006012          506 --------YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVN  577 (664)
Q Consensus       506 --------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~  577 (664)
                              .+.+...+..+...+.+.|++++|.+.+++..+.... +...+..++..|...|++++|++.          
T Consensus       591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~----------  659 (1157)
T PRK11447        591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQ----------  659 (1157)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH----------
Confidence                    1233344455555556666666666666666654322 455556666666666666666555          


Q ss_pred             HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012          578 AFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGL--KP---DVVTYTTLMKALIRVDKFHKVFSSYLF  651 (664)
Q Consensus       578 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~a~~~~g~~~~A~~~~~~  651 (664)
                       ++....  ..|+ ...+..+..++...|++++|.+++++++...-  +|   +...+..+...+.+.|+.++|.+.|+.
T Consensus       660 -l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~  736 (1157)
T PRK11447        660 -LAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD  736 (1157)
T ss_pred             -HHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             444443  2343 45677788999999999999999999987421  22   235677788999999999999999983

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=2.3e-19  Score=179.16  Aligned_cols=441  Identities=16%  Similarity=0.133  Sum_probs=305.2

Q ss_pred             HHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006012          166 YSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRT  241 (664)
Q Consensus       166 ~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  241 (664)
                      ...|.+-..+.|++.+|.+.    ....+.+....-.+-.++....++++....-....+.. +--..+|..+.+.+-..
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence            55667777788888888775    22223333344445566677777776665544444432 33456777778888888


Q ss_pred             CCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHH
Q 006012          242 NKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTAT-YAAVITALSNSGRTIEAE  320 (664)
Q Consensus       242 g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~  320 (664)
                      |++++++  .+|+.+++.. +..+..|-.+..++...|+.+.|.+.|.+..+.  .|+... ...+...+-..|++++|.
T Consensus       130 g~~~~al--~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  130 GQLQDAL--ALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             chHHHHH--HHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence            8775544  7777777654 335667777788888888888888888777764  455443 334555555678888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012          321 AVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       321 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  399 (664)
                      ..|.+.++... -=...|..|...+-..|++..|++-|++..+.  .|+ ...|-.|...|...+.+++|...|.+....
T Consensus       205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l  281 (966)
T KOG4626|consen  205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL  281 (966)
T ss_pred             HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence            88877776422 12456777877888888888888888887765  333 456777778888888888888888777654


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN  479 (664)
Q Consensus       400 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  479 (664)
                      . +.....+..+...|...|..+.|+..+++..+.. +.-...|+.|..++-..|++.+|...++..+... .......+
T Consensus       282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~  358 (966)
T KOG4626|consen  282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN  358 (966)
T ss_pred             C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence            3 3345566777777888888888888888877653 2235678888888888888888888888877653 23456677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006012          480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQS  558 (664)
Q Consensus       480 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~  558 (664)
                      .|...|...|.+++|..+|....+-. +--...++.|...|-++|++++|...+++.++  ++|+ ...|+.+...|-..
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence            78888888888888888888877653 23355677788888888888888888888876  5665 46777778888888


Q ss_pred             CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 006012          559 GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKAL  636 (664)
Q Consensus       559 g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~a~  636 (664)
                      |+.+.|+..+.           +...  +.|.- ..++.|...|-..|+..+|++-+++.++  ++||. ..|..++.++
T Consensus       436 g~v~~A~q~y~-----------rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  436 GDVSAAIQCYT-----------RAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL  500 (966)
T ss_pred             hhHHHHHHHHH-----------HHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence            88877777643           2222  45553 4677888888888888888888888877  67764 4555555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.88  E-value=7.4e-17  Score=181.59  Aligned_cols=473  Identities=13%  Similarity=0.021  Sum_probs=278.2

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEK  211 (664)
Q Consensus       136 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~  211 (664)
                      +....|+++.|+..|+.+++..  |.+..++..|...|.+.|+.++|...    ....+.|...+..+ ..+   +++++
T Consensus        53 ~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~k  126 (987)
T PRK09782         53 KAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVK  126 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChh
Confidence            3445589999999999999987  77789999999999999999999887    44455555555554 222   89999


Q ss_pred             HHHHHHHHHHcCCCCC-hhhHHHHHHH--------HHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCH
Q 006012          212 ALNLMSKMRQDGYHCD-FINYSLVIQS--------LTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV-IVGFAKAGDA  281 (664)
Q Consensus       212 A~~~~~~m~~~g~~p~-~~~~~~ll~~--------~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l-i~~~~~~g~~  281 (664)
                      |..+++++....  |+ ..++..+...        |.+.+.     +.+.++ .......|+..+.... ...|.+.|++
T Consensus       127 A~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eq-----Al~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw  198 (987)
T PRK09782        127 SVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPV-----ARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW  198 (987)
T ss_pred             HHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHH-----HHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence            999999999874  44 3444444333        444322     234444 3333334445544444 8899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012          282 SKAMRFLGMAQGVGLSPKTATYAAVITALSN-SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSE  360 (664)
Q Consensus       282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  360 (664)
                      ++|++.+.++.+.+ +.+..-...+..+|.+ .++ +++..+++.    .++-+...+..+...|.+.|+.++|.+++++
T Consensus       199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~  272 (987)
T PRK09782        199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE  272 (987)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            99999999998876 3345556666667777 366 667666543    2234677777888888888888888877777


Q ss_pred             HHHCCCC-CCHHHH------------------------------HHHHHHHH----------------------------
Q 006012          361 MERSGVL-PDEHTY------------------------------SLLIDAYA----------------------------  381 (664)
Q Consensus       361 m~~~g~~-~~~~~~------------------------------~~li~~~~----------------------------  381 (664)
                      +...-.. |...+|                              -.++..+.                            
T Consensus       273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  352 (987)
T PRK09782        273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS  352 (987)
T ss_pred             CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence            6432111 111111                              00011222                            


Q ss_pred             -----------------------------------HcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC-----
Q 006012          382 -----------------------------------NAGRWESARIVLKEMEVS--HAKPNSFIYSRILAGYRDRG-----  419 (664)
Q Consensus       382 -----------------------------------~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~ll~~~~~~g-----  419 (664)
                                                         +.|+.++|.++|+.....  ....+......++..|.+.+     
T Consensus       353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  432 (987)
T PRK09782        353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP  432 (987)
T ss_pred             cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence                                               234444444444444321  01112222223344443333     


Q ss_pred             ----------------------------------------------------------CHHHHHHHHHHHHHCCCCCCHH
Q 006012          420 ----------------------------------------------------------EWQRTFQVLKEMKSSGVEPDTH  441 (664)
Q Consensus       420 ----------------------------------------------------------~~~~a~~~~~~m~~~g~~~~~~  441 (664)
                                                                                +.++|...+.+....  .|+..
T Consensus       433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~  510 (987)
T PRK09782        433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAW  510 (987)
T ss_pred             HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchH
Confidence                                                                      333344433333322  13322


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      ....+...+...|++++|...|+++...  .|+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...+.
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~  587 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY  587 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence            2222222333455555555555554332  2223333444444555555555555555555443 222222222222333


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 006012          522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINA  600 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~  600 (664)
                      ..|++++|...+++.++.  .|+...+..+..++.+.|++++|+..           +++....  .|+ ...++.+..+
T Consensus       588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~-----------l~~AL~l--~Pd~~~a~~nLG~a  652 (987)
T PRK09782        588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSD-----------LRAALEL--EPNNSNYQAALGYA  652 (987)
T ss_pred             hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHH-----------HHHHHHh--CCCCHHHHHHHHHH
Confidence            345555555555555543  33455555555556666665555554           4454443  454 4577888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          601 FGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       601 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      +...|++++|+..+++..+  ..| +...+..+..++.+.|++++|+..|+
T Consensus       653 L~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        653 LWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999988  344 56788899999999999999998888

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=1.6e-19  Score=189.35  Aligned_cols=302  Identities=19%  Similarity=0.188  Sum_probs=236.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMG  349 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g  349 (664)
                      ..+...|++++|++.|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++   ...+..+...|.+.|
T Consensus        43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            34567789999999999998864 34567888899999999999999999998887533222   256788888999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 006012          350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS----FIYSRILAGYRDRGEWQRTF  425 (664)
Q Consensus       350 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~  425 (664)
                      ++++|..+|+++.+.. ..+..++..++..|.+.|++++|.+.++.+.+.+..+..    ..+..+...+.+.|++++|.
T Consensus       122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999998753 246778889999999999999999999998876533322    24556777888899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012          426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG  505 (664)
Q Consensus       426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  505 (664)
                      ..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|...++++.+..
T Consensus       201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  279 (389)
T PRK11788        201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY  279 (389)
T ss_pred             HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999988754 345667788888999999999999999998875422224567888899999999999999999988864


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHhhhHHHHHHHHHHH
Q 006012          506 YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ---SGRFDDAIECLEGLSDQAVNAFRVM  582 (664)
Q Consensus       506 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~a~~~~~~m  582 (664)
                        |+...+..+...+.+.|++++|..++.++.+.  .|+..+++.++..+..   .|+.++++.+           +++|
T Consensus       280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~-----------~~~~  344 (389)
T PRK11788        280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLL-----------LRDL  344 (389)
T ss_pred             --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHH-----------HHHH
Confidence              56667788889999999999999999988875  5888888888887775   4467666665           4555


Q ss_pred             HHCCCCCCHH
Q 006012          583 RTDGLKPSNL  592 (664)
Q Consensus       583 ~~~g~~p~~~  592 (664)
                      .+.++.|++.
T Consensus       345 ~~~~~~~~p~  354 (389)
T PRK11788        345 VGEQLKRKPR  354 (389)
T ss_pred             HHHHHhCCCC
Confidence            5554555544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.8e-18  Score=172.83  Aligned_cols=437  Identities=14%  Similarity=0.061  Sum_probs=345.6

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN  214 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~  214 (664)
                      ..|++..|.+.-..+-..+  +.+....-.+-.++.+..+++.....    .+..+.-..+|..+.+.+-..|++++|+.
T Consensus        60 q~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~  137 (966)
T KOG4626|consen   60 QGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALA  137 (966)
T ss_pred             hccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHH
Confidence            5678888888877776655  33322333344566677777655443    33444456799999999999999999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL-NDVIVGFAKAGDASKAMRFLGMAQG  293 (664)
Q Consensus       215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~-~~li~~~~~~g~~~~A~~~~~~~~~  293 (664)
                      .++.|.+.. +-....|.-+..++...|+...+  .+.|.+..+.  .|+.... +.+....-..|++.+|...|-+..+
T Consensus       138 ~y~~aiel~-p~fida~inla~al~~~~~~~~a--~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~  212 (966)
T KOG4626|consen  138 LYRAAIELK-PKFIDAYINLAAALVTQGDLELA--VQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE  212 (966)
T ss_pred             HHHHHHhcC-chhhHHHhhHHHHHHhcCCCccc--HHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence            999999863 23456888888899999988654  4666666543  5555544 3444555567999999999998887


Q ss_pred             CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          294 VGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPR-TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEH  371 (664)
Q Consensus       294 ~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  371 (664)
                      .  .|. .+.|..|...+-..|+...|++.|++..+.  .|+ ...|-.|...|...+.++.|...+.+...... ...+
T Consensus       213 ~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~  287 (966)
T KOG4626|consen  213 T--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAV  287 (966)
T ss_pred             h--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchh
Confidence            5  454 678999999999999999999999999875  443 57888999999999999999999999887532 2577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006012          372 TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFG  451 (664)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  451 (664)
                      .+..+...|-.+|.+|-|+..|++..+.. +.-...|+.|..++-..|++.+|.+.+.+..... +......+.|...|.
T Consensus       288 a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~  365 (966)
T KOG4626|consen  288 AHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR  365 (966)
T ss_pred             hccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            88889999999999999999999998764 3456789999999999999999999999988764 445678899999999


Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR  531 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  531 (664)
                      ..|.+++|..+|....+-. +--...+|.|...|-+.|++++|+..+++.+.-. +.-...|+.+...|-..|+.+.|.+
T Consensus       366 E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q  443 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQ  443 (966)
T ss_pred             HhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHH
Confidence            9999999999999988753 2235678999999999999999999999998864 2335689999999999999999999


Q ss_pred             HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 006012          532 LLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQR  606 (664)
Q Consensus       532 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~  606 (664)
                      .+.+.+..  .|. ....+.|...|-..|++.+|+..++           ...+  ++||. ..|..++.++.-..+
T Consensus       444 ~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~-----------~aLk--lkPDfpdA~cNllh~lq~vcd  505 (966)
T KOG4626|consen  444 CYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYR-----------TALK--LKPDFPDAYCNLLHCLQIVCD  505 (966)
T ss_pred             HHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHH-----------HHHc--cCCCCchhhhHHHHHHHHHhc
Confidence            99999985  444 5778899999999999999988754           2222  67875 467666665543333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=3.2e-19  Score=187.02  Aligned_cols=304  Identities=15%  Similarity=0.117  Sum_probs=250.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 006012          306 VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD---EHTYSLLIDAYAN  382 (664)
Q Consensus       306 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~  382 (664)
                      ....+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++   ..++..+...|.+
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            34456788999999999999998643 3567899999999999999999999999987643222   3567888999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHH
Q 006012          383 AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD----THFYNVMIDTFGKYNCLHH  458 (664)
Q Consensus       383 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~  458 (664)
                      .|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++
T Consensus       120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            999999999999998753 45678899999999999999999999999988653332    2245667778889999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      |...++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.+
T Consensus       199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999998764 3456678888999999999999999999998865222246788899999999999999999999988


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 006012          539 QGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE---DQRDAEAFAVLQ  615 (664)
Q Consensus       539 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~  615 (664)
                      .  .|+...+..++..+.+.|++++|..+++           ++.+  ..|+..++..++..+..   .|+.++++.+++
T Consensus       278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~-----------~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~  342 (389)
T PRK11788        278 E--YPGADLLLALAQLLEEQEGPEAAQALLR-----------EQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLR  342 (389)
T ss_pred             h--CCCchHHHHHHHHHHHhCCHHHHHHHHH-----------HHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence            6  4666777889999999999999988754           3333  26899999988887775   568999999999


Q ss_pred             HHHHCCCCCCHH
Q 006012          616 YMKENGLKPDVV  627 (664)
Q Consensus       616 ~m~~~g~~p~~~  627 (664)
                      +|.+.++.|++.
T Consensus       343 ~~~~~~~~~~p~  354 (389)
T PRK11788        343 DLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHhCCCC
Confidence            999877777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=6.6e-17  Score=178.70  Aligned_cols=401  Identities=12%  Similarity=0.020  Sum_probs=279.7

Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006012          231 YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITAL  310 (664)
Q Consensus       231 ~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  310 (664)
                      +...-..+.+.|+++.+  ...|+..+..  .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus       130 ~k~~G~~~~~~~~~~~A--i~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~  204 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKA--IKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHcCCHHHH--HHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            44555566777777554  4777777654  4567778888888888888888888888888754 33567888888888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----------------
Q 006012          311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY-----------------  373 (664)
Q Consensus       311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------  373 (664)
                      ...|++++|+..|......+...+.. ...++..+........+...++.-...  .|.....                 
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  281 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEN--LPSVTFVGNYLQSFRPKPRPAGLE  281 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHccCCcchhhhh
Confidence            88888888888887665432221222 122222111111111121111110000  0000000                 


Q ss_pred             ----------HHHHHHH------HHcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          374 ----------SLLIDAY------ANAGRWESARIVLKEMEVSH--AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG  435 (664)
Q Consensus       374 ----------~~li~~~------~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  435 (664)
                                ..++..+      ...+++++|.+.|++....+  .+.....|..+...+...|++++|+..+++..+..
T Consensus       282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~  361 (615)
T TIGR00990       282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD  361 (615)
T ss_pred             cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                      0001000      12367899999999998764  23345678888889999999999999999988763


Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012          436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI  515 (664)
Q Consensus       436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~  515 (664)
                       +.....|..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...|++.++.. +.+...+..
T Consensus       362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~  438 (615)
T TIGR00990       362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ  438 (615)
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence             3346688888999999999999999999998764 3467889999999999999999999999999876 556778888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HH
Q 006012          516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-AL  594 (664)
Q Consensus       516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~  594 (664)
                      +...+.+.|++++|...+++.++.. .-+...++.+...+...|++++|++.++....    +-..  ..+...+.. .+
T Consensus       439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~----l~p~--~~~~~~~~~~l~  511 (615)
T TIGR00990       439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE----LEKE--TKPMYMNVLPLI  511 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCc--cccccccHHHHH
Confidence            8999999999999999999998753 23578899999999999999999988652221    1000  000111111 12


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012          595 NSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDKFHKVFSSYLF  651 (664)
Q Consensus       595 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~~~~A~~~~~~  651 (664)
                      +..+..+...|++++|.+++++..+.  .| +...+..++.++.+.|++++|.+.|+.
T Consensus       512 ~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       512 NKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            22233344579999999999999884  45 456788999999999999999999984

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.84  E-value=4.9e-16  Score=171.82  Aligned_cols=399  Identities=13%  Similarity=0.039  Sum_probs=291.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006012          195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG  274 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~  274 (664)
                      .+..+...+.+.|++++|+..|++..+.  .|+...|..+..++.+.|+++.++  ..+....+.. +.+...+..+..+
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai--~~~~~al~l~-p~~~~a~~~~a~a  203 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVV--EDTTAALELD-PDYSKALNRRANA  203 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHH--HHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5666778889999999999999998875  578888888888899999986654  7777777653 4567789999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHH----------------
Q 006012          275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTK----------------  336 (664)
Q Consensus       275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~----------------  336 (664)
                      |...|++++|+..|..+...+- .+......++..+...    .+........+....  |...                
T Consensus       204 ~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (615)
T TIGR00990       204 YDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA  278 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence            9999999999999887765431 2222222222222211    111111111111000  0000                


Q ss_pred             --------------HHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          337 --------------AYNALLKG---YVKMGYLKDAEFVVSEMERSG-VLP-DEHTYSLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       337 --------------~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                                    .+..+...   ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                          00001000   012367899999999998764 223 45678888889999999999999999998


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          398 VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT  477 (664)
Q Consensus       398 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  477 (664)
                      ... +.+...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...|++.++.. +.+...
T Consensus       359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~  435 (615)
T TIGR00990       359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS  435 (615)
T ss_pred             HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence            764 3346688889999999999999999999988764 4567899999999999999999999999999875 345777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV------TYTTL  551 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~l  551 (664)
                      +..+...+.+.|++++|+..|++.++.. +.+...|+.+...+...|++++|.+.+++.+......+..      .++..
T Consensus       436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a  514 (615)
T TIGR00990       436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA  514 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence            8888999999999999999999998864 5567889999999999999999999999998863321111      11222


Q ss_pred             HHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          552 VDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       552 i~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                      +..+...|++++|.+++           .+....  .|+. ..+..+...+.+.|++++|+++|++..+.
T Consensus       515 ~~~~~~~~~~~eA~~~~-----------~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       515 LALFQWKQDFIEAENLC-----------EKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHhhhHHHHHHHH-----------HHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            22334457777777664           343332  3544 47889999999999999999999999873

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.83  E-value=1.8e-16  Score=174.76  Aligned_cols=324  Identities=10%  Similarity=0.029  Sum_probs=144.5

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006012          232 SLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALS  311 (664)
Q Consensus       232 ~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  311 (664)
                      ..++..+.+.|+.+.+  ..++..+.... +-+...+..++......|++++|.+.|+++.... +.+...+..+...+.
T Consensus        46 ~~~~~~~~~~g~~~~A--~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~  121 (656)
T PRK15174         46 ILFAIACLRKDETDVG--LTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL  121 (656)
T ss_pred             HHHHHHHHhcCCcchh--HHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            3344444455554332  24444444332 2222333333344444555555555555555432 223444555555555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          312 NSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARI  391 (664)
Q Consensus       312 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  391 (664)
                      +.|++++|.+.|+++.+.. +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~  198 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD  198 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence            5555555555555554431 113344444555555555555555555544433222 11222222 22444555555555


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHH
Q 006012          392 VLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH----AMAAFDRML  467 (664)
Q Consensus       392 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~  467 (664)
                      .++.+......++...+..+...+.+.|++++|...++.+.... +.+...+..+...+...|++++    |...+++..
T Consensus       199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            55554443222223333333444455555555555555544432 2234444445555555555443    455555544


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 006012          468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV-V  546 (664)
Q Consensus       468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~  546 (664)
                      +.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++++...+  |+. .
T Consensus       278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~  353 (656)
T PRK15174        278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK  353 (656)
T ss_pred             hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence            432 2234444455555555555555555555554443 2233344444445555555555555555554432  221 2


Q ss_pred             HHHHHHHHHHhcCChHHHHHH
Q 006012          547 TYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       547 ~~~~li~~~~~~g~~~~A~~~  567 (664)
                      .+..+..++...|+.++|+..
T Consensus       354 ~~~~~a~al~~~G~~deA~~~  374 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESV  374 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHH
Confidence            222233444455555554444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.83  E-value=1.2e-14  Score=163.92  Aligned_cols=476  Identities=11%  Similarity=0.022  Sum_probs=328.3

Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------HcccCCHHHHHHhhCCCCC--CHHH-HHHHHHHHHHcCCH
Q 006012          141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHA--------LGRSEKLYEAFLLSQRQRL--TPLT-YNALISACARNDDL  209 (664)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~--~~~~-~~~li~~~~~~g~~  209 (664)
                      +....|..+++.+.+..  |.+..++..+...        |.+.+...+++. .....+  ++.+ .-.+...|.+.|++
T Consensus       122 ~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw  198 (987)
T PRK09782        122 PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW  198 (987)
T ss_pred             ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence            67778889999998887  6777777777776        888877777777 333333  3444 44448999999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012          210 EKALNLMSKMRQDGYHCDFINYSLVIQSLTR-TNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFL  288 (664)
Q Consensus       210 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~  288 (664)
                      ++|++++.++.+.+ +.+..-...+-.++.. .++   ..+..++..    .+..|...+..++..|.+.|+.++|.+++
T Consensus       199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~---~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L  270 (987)
T PRK09782        199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD---DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYL  270 (987)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH---HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999986 3334445555556665 354   223344332    33468889999999999999999999998


Q ss_pred             HHHHhCCCC-CCHHHHH------------------------------HHHHHHHhcCChH--------------------
Q 006012          289 GMAQGVGLS-PKTATYA------------------------------AVITALSNSGRTI--------------------  317 (664)
Q Consensus       289 ~~~~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~--------------------  317 (664)
                      +++...... |...+|.                              .++..+.+.++++                    
T Consensus       271 ~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  350 (987)
T PRK09782        271 IENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYA  350 (987)
T ss_pred             HhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHh
Confidence            876543211 2222211                              1122233333333                    


Q ss_pred             -------------------------------------------HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC--
Q 006012          318 -------------------------------------------EAEAVFEELKES--GLKPRTKAYNALLKGYVKMGY--  350 (664)
Q Consensus       318 -------------------------------------------~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~--  350 (664)
                                                                 +|.++|+.....  ...++....+-|+..|.+.+.  
T Consensus       351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  430 (987)
T PRK09782        351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA  430 (987)
T ss_pred             hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence                                                       333333332220  011122233345555555544  


Q ss_pred             -HHHHHHH------------H----------HHHHHC-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006012          351 -LKDAEFV------------V----------SEMERS-GV-LP--DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP  403 (664)
Q Consensus       351 -~~~a~~~------------~----------~~m~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~  403 (664)
                       ..++..+            .          +..... +. .+  +...|..+..++.. ++.++|...+.+.....  |
T Consensus       431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P  507 (987)
T PRK09782        431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P  507 (987)
T ss_pred             chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence             2222211            1          111100 11 12  45666667666665 78888888777776553  5


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLID  483 (664)
Q Consensus       404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  483 (664)
                      +......+...+...|++++|...|+.+...  +|+...+..+...+.+.|+.++|...++...+.. +.+...+..+..
T Consensus       508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~  584 (987)
T PRK09782        508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA  584 (987)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence            5555445556667899999999999997654  4555566777788899999999999999999865 223333334444


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006012          484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD  563 (664)
Q Consensus       484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  563 (664)
                      .+.+.|++++|...+++..+..  |+...|..+..++.+.|+.++|...+++....... +...+..+..++...|++++
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~ee  661 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQ  661 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence            4456699999999999999875  67889999999999999999999999999987533 67788889999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 006012          564 AIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRVDK  641 (664)
Q Consensus       564 A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~a~~~~g~  641 (664)
                      |+..++           +..+  ..| +...+..+..++...|++++|+..+++..+  +.|+. .+.........+..+
T Consensus       662 Ai~~l~-----------~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~  726 (987)
T PRK09782        662 SREMLE-----------RAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFN  726 (987)
T ss_pred             HHHHHH-----------HHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHH
Confidence            988754           3332  245 456889999999999999999999999998  56654 677778888888888


Q ss_pred             HhHHHHHHHH
Q 006012          642 FHKVFSSYLF  651 (664)
Q Consensus       642 ~~~A~~~~~~  651 (664)
                      ++.|.+.|+.
T Consensus       727 ~~~a~~~~~r  736 (987)
T PRK09782        727 FRRLHEEVGR  736 (987)
T ss_pred             HHHHHHHHHH
Confidence            9999888873

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=1.9e-15  Score=166.58  Aligned_cols=336  Identities=10%  Similarity=0.060  Sum_probs=272.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012          193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI  272 (664)
Q Consensus       193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li  272 (664)
                      ..-...++..+.+.|++++|+.+++...... +-+...+..+..+....|+.+.  +...++.+.... +.+...+..+.
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~--A~~~l~~~l~~~-P~~~~a~~~la  117 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA--VLQVVNKLLAVN-VCQPEDVLLVA  117 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH--HHHHHHHHHHhC-CCChHHHHHHH
Confidence            3445667788899999999999999998874 2233455555566777888855  558888888764 55677888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK  352 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  352 (664)
                      ..+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|+++
T Consensus       118 ~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~  194 (656)
T PRK15174        118 SVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLP  194 (656)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHH
Confidence            99999999999999999998753 446788999999999999999999999988775443 33344333 3478899999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH
Q 006012          353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR----TFQVL  428 (664)
Q Consensus       353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~  428 (664)
                      +|...++.+.+....++...+..+...+.+.|++++|+..+++..... +.+...+..+...+...|++++    |...|
T Consensus       195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~  273 (656)
T PRK15174        195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW  273 (656)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence            999999998876544455566666788999999999999999998765 4567788889999999999986    89999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012          429 KEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP  508 (664)
Q Consensus       429 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  508 (664)
                      +...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+  |
T Consensus       274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P  349 (656)
T PRK15174        274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--G  349 (656)
T ss_pred             HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c
Confidence            9988764 4567889999999999999999999999999865 3456678888999999999999999999998874  4


Q ss_pred             CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          509 CT-TTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       509 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      +. ..+..+..++...|+.++|...+++..+..
T Consensus       350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            43 344445678899999999999999998863

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.79  E-value=7.8e-15  Score=165.28  Aligned_cols=408  Identities=11%  Similarity=0.062  Sum_probs=254.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006012          199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA  278 (664)
Q Consensus       199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~  278 (664)
                      .+......|+.++|++++.+..... +.+...+..+..++...|+.+.  +..+++...... +.+...+..+...+...
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~--A~~~~~~al~~~-P~~~~a~~~la~~l~~~   96 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQN--SLTLWQKALSLE-PQNDDYQRGLILTLADA   96 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            3444445555555555555554311 2223334444444555555432  234444444331 33344555666777778


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV  358 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  358 (664)
                      |++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...+..+.|.+.+
T Consensus        97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l  173 (765)
T PRK10049         97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI  173 (765)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence            88888888888877653 33455 777777888888888888888888775432 4555566777777778888888777


Q ss_pred             HHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhc-CCCCCHH-HH----HHHHHHHHhc
Q 006012          359 SEMERSGVLPDE------HTYSLLIDAYA-----NAGRW---ESARIVLKEMEVS-HAKPNSF-IY----SRILAGYRDR  418 (664)
Q Consensus       359 ~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-~~~~~~~-~~----~~ll~~~~~~  418 (664)
                      +....   .|+.      .....++..+.     ..+++   ++|++.++.+.+. ...|+.. .+    ...+..+...
T Consensus       174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~  250 (765)
T PRK10049        174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR  250 (765)
T ss_pred             HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence            76553   1221      11112222221     12233   6777788877753 1122221 11    1113445677


Q ss_pred             CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHH
Q 006012          419 GEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP---DTITWNTLIDCHFKCGRYDRA  494 (664)
Q Consensus       419 g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A  494 (664)
                      |++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+.+.+.....   .......+..++.+.|++++|
T Consensus       251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA  329 (765)
T PRK10049        251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA  329 (765)
T ss_pred             hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence            8888899988888876522 322 22234668888899999999988887643111   134456666678888999999


Q ss_pred             HHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          495 EELFEEMQERGY-----------FPC---TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR  560 (664)
Q Consensus       495 ~~~~~~m~~~~~-----------~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  560 (664)
                      ..+++.+.+..-           .|+   ...+..+...+...|+.++|++.++++..... -+...+..+...+...|+
T Consensus       330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~  408 (765)
T PRK10049        330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGW  408 (765)
T ss_pred             HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence            999888876530           123   23455667778888999999999999887643 357788888888889998


Q ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM  633 (664)
Q Consensus       561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~  633 (664)
                      +++|++.++           +...  ..|+ ...+..++..+...|++++|..+++++++  ..|+......+-
T Consensus       409 ~~~A~~~l~-----------~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~  467 (765)
T PRK10049        409 PRAAENELK-----------KAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLA  467 (765)
T ss_pred             HHHHHHHHH-----------HHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            888887754           3332  3465 44666777788888999999999999988  456644333333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.79  E-value=6e-15  Score=166.19  Aligned_cols=401  Identities=11%  Similarity=0.067  Sum_probs=295.2

Q ss_pred             ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012          227 DFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAV  306 (664)
Q Consensus       227 ~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  306 (664)
                      +..-..-.+......|+.+++  ..++....... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A--~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   89 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEV--ITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL   89 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHH--HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            333344445566677777554  47788776522 5667789999999999999999999999988753 4457778889


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012          307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW  386 (664)
Q Consensus       307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  386 (664)
                      +..+...|++++|...++++.+... .+.. +..+...+...|+.++|...++++.+.... +...+..+...+...+..
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence            9999999999999999999988632 3555 888899999999999999999999987544 566777788888899999


Q ss_pred             HHHHHHHHHHHhcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHH
Q 006012          387 ESARIVLKEMEVSHAKPNS------FIYSRILAGYR-----DRGEW---QRTFQVLKEMKSS-GVEPDTH-FY----NVM  446 (664)
Q Consensus       387 ~~A~~l~~~m~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~l  446 (664)
                      ++|++.++....   .|+.      .....++....     ..+++   ++|++.++.+.+. ...|+.. .+    ...
T Consensus       167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~  243 (765)
T PRK10049        167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR  243 (765)
T ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence            999999886653   2221      11122222222     22234   7788888888754 2223221 11    111


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHh
Q 006012          447 IDTFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP---CTTTYNIMINLLGE  522 (664)
Q Consensus       447 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~  522 (664)
                      +..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|+++.+.....   .......+..++..
T Consensus       244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~  322 (765)
T PRK10049        244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE  322 (765)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence            33456779999999999999987532 332 22225778999999999999999988654111   13456667778899


Q ss_pred             cCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCC
Q 006012          523 QERWEDVKRLLGNMRAQGL-----------LPN---VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLK  588 (664)
Q Consensus       523 ~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~  588 (664)
                      .|++++|.++++++.....           .|+   ...+..+...+...|++++|+++++           ++... .+
T Consensus       323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~-----------~al~~-~P  390 (765)
T PRK10049        323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR-----------ELAYN-AP  390 (765)
T ss_pred             cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH-----------HHHHh-CC
Confidence            9999999999999987531           123   2355677888999999999988754           33332 12


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012          589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVFSSYLFF  652 (664)
Q Consensus       589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~  652 (664)
                      -+...+..+...+...|++++|++.+++.++  +.|+ ...+..++..+.+.|++++|.+.++.+
T Consensus       391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        391 GNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456889999999999999999999999998  4565 677778888999999999999999733

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.5e-14  Score=151.19  Aligned_cols=457  Identities=14%  Similarity=0.097  Sum_probs=319.7

Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCC---CCCHHHHHHHHHHHHHcCCHHHHH
Q 006012          141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQ---RLTPLTYNALISACARNDDLEKAL  213 (664)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~---~~~~~~~~~li~~~~~~g~~~~A~  213 (664)
                      .+...|..++..+-+.+  +.++.+.+.|.+.|.--|++..++.+    ....   ..-..+|.-+.++|-..|++++|.
T Consensus       250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~  327 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF  327 (1018)
T ss_pred             HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence            35677777887777665  56678888998888888888888776    1111   112246888888899999999999


Q ss_pred             HHHHHHHHcCCCCChhhHH--HHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHH
Q 006012          214 NLMSKMRQDGYHCDFINYS--LVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAG----DASKAMRF  287 (664)
Q Consensus       214 ~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g----~~~~A~~~  287 (664)
                      ..|.+..+.  .++.+++.  -+.+.+.+.|+...+  ...|+.+.+.. +-+..+...|...|...+    ..++|..+
T Consensus       328 ~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s--~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~  402 (1018)
T KOG2002|consen  328 KYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEES--KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNV  402 (1018)
T ss_pred             HHHHHHHcc--CCCCccccccchhHHHHHhchHHHH--HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence            998877765  35554444  455666777776544  46677766543 445556666666666664    55677777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          288 LGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK----ESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       288 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  363 (664)
                      +.+..+.- +.|...|..+...+-...-+.. +.+|....    ..+..+.....|.+...+...|+++.|...|+....
T Consensus       403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~  480 (1018)
T KOG2002|consen  403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG  480 (1018)
T ss_pred             HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence            77766643 4567777777776665554444 66665543    345556778888899989999999999988888765


Q ss_pred             C---CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          364 S---GVLPD------EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS  434 (664)
Q Consensus       364 ~---g~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  434 (664)
                      .   ...+|      ..+-..+...+-..++.+.|.+.|..+.... +.-+..|-.++......+...+|...+++....
T Consensus       481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~  559 (1018)
T KOG2002|consen  481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI  559 (1018)
T ss_pred             hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence            4   11222      2233445666666778899999999888753 222334444443444556788888888887764


Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHH
Q 006012          435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEPDTITWNTLIDCHFK------------CGRYDRAEELFEEM  501 (664)
Q Consensus       435 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m  501 (664)
                      . ..++..++.+...+.+...+..|.+-|....+.- ..+|+.+.-+|.+.|.+            .+..++|+++|.+.
T Consensus       560 d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv  638 (1018)
T KOG2002|consen  560 D-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV  638 (1018)
T ss_pred             c-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence            3 4566667777778888888888888777776542 23566666666665543            24577888888888


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHH
Q 006012          502 QERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRV  581 (664)
Q Consensus       502 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~  581 (664)
                      +... +-|...-|.+.-+++..|++.+|..+|.+..+... -...+|..+.++|..+|++..|+++|+..          
T Consensus       639 L~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~----------  706 (1018)
T KOG2002|consen  639 LRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC----------  706 (1018)
T ss_pred             HhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH----------
Confidence            8876 56777778888888999999999999999888643 25567888999999999999998887633          


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          582 MRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       582 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                      |....-.-+..+...|..++.+.|.+.+|.+.+......
T Consensus       707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            223333456778888999999999999999988888773

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=3.7e-14  Score=136.52  Aligned_cols=439  Identities=15%  Similarity=0.192  Sum_probs=310.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 006012          193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECDKIELDGQLLNDV  271 (664)
Q Consensus       193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~~~~~d~~~~~~l  271 (664)
                      +.+=|.|+. ...+|.+.++.-+|++|...|+......-..+++..+-.+.-+.-. -++-|-.|...| +.+..+|   
T Consensus       116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---  190 (625)
T ss_pred             hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence            345555555 4578999999999999999998777776666666544333221111 133444444433 2222333   


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL  351 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  351 (664)
                           +.|++.+  -+|+.     .+.+..+|.++|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-... 
T Consensus       191 -----K~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-  257 (625)
T KOG4422|consen  191 -----KSGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-  257 (625)
T ss_pred             -----ccccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-
Confidence                 3344433  23333     2557789999999999999999999999999888788899999999887554332 


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 006012          352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWES----ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR-TFQ  426 (664)
Q Consensus       352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~  426 (664)
                         .+++.+|....+.||..|+|+++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus       258 ---K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~  334 (625)
T KOG4422|consen  258 ---KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS  334 (625)
T ss_pred             ---HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence               6788899988899999999999999999998765    45778889999999999999999999988887644 444


Q ss_pred             HHHHHHH----CCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCH
Q 006012          427 VLKEMKS----SGV----EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG----IEPD---TITWNTLIDCHFKCGRY  491 (664)
Q Consensus       427 ~~~~m~~----~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~  491 (664)
                      ++.++..    +.+    +.|...|...+..|.+..+.+-|.++..-+....    +.|+   ..-|..+....|+....
T Consensus       335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~  414 (625)
T KOG4422|consen  335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI  414 (625)
T ss_pred             HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            4444432    222    2355677788888889999999998887665321    2233   23466777888999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch-HHHHHHHh
Q 006012          492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG-RF-DDAIECLE  569 (664)
Q Consensus       492 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~-~~A~~~~~  569 (664)
                      +.-++.|+.|.-+-+.|+..+...++++..-.+.++-..++|..++..|..-+.....-++..++... .. ..+.+-+.
T Consensus       415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~  494 (625)
T KOG4422|consen  415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ  494 (625)
T ss_pred             HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence            99999999999988889999999999999999999999999999999886666666555666665544 11 12222222


Q ss_pred             --------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHH
Q 006012          570 --------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG----LKPDVVTYTTLMKALI  637 (664)
Q Consensus       570 --------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~a~~  637 (664)
                              .+.+.-...-.+|+....  .....+...-.+.+.|+.++|.+++......+    ..|......-+++.-.
T Consensus       495 ~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~  572 (625)
T KOG4422|consen  495 VAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK  572 (625)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence                    111111222334444333  34567777778899999999999999996533    2334445557788888


Q ss_pred             hcCCHhHHHHHHHHHHH
Q 006012          638 RVDKFHKVFSSYLFFNI  654 (664)
Q Consensus       638 ~~g~~~~A~~~~~~~~~  654 (664)
                      +.++...|..+++++..
T Consensus       573 ~~~spsqA~~~lQ~a~~  589 (625)
T KOG4422|consen  573 VSNSPSQAIEVLQLASA  589 (625)
T ss_pred             hcCCHHHHHHHHHHHHH
Confidence            88889999998886643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=1.7e-13  Score=151.63  Aligned_cols=421  Identities=12%  Similarity=0.073  Sum_probs=191.9

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 006012          204 ARNDDLEKALNLMSKMRQDGYHCDF--INYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDA  281 (664)
Q Consensus       204 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~  281 (664)
                      .+.|+++.|++.|++..+..  |+.  ..+ .++..+...|+.++  +...++... ...+........+...|...|++
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~--A~~~~eka~-~p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQE--VIDVYERYQ-SSMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHH--HHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCH
Confidence            45555555555555554432  332  122 44444444444432  224444433 11112222233334455555666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEM  361 (664)
Q Consensus       282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  361 (664)
                      ++|+++|+++.+.. +.+...+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|.+.++++
T Consensus       119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl  195 (822)
T PRK14574        119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA  195 (822)
T ss_pred             HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            66666666655543 223444445555555556666666666555543  233333333333333334444455666665


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHHH
Q 006012          362 ERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY------SRILAGY-----RDRGE---WQRTFQV  427 (664)
Q Consensus       362 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~------~~ll~~~-----~~~g~---~~~a~~~  427 (664)
                      .+.... +...+..+...+.+.|-...|.++.++-...- .+....+      ..+++.-     ....+   .+.|+.-
T Consensus       196 l~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~  273 (822)
T PRK14574        196 VRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD  273 (822)
T ss_pred             HHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence            555322 44455555555555555555555444322110 0000000      0000000     01111   2233333


Q ss_pred             HHHHHHC-CCCCC-HHH----HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          428 LKEMKSS-GVEPD-THF----YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       428 ~~~m~~~-g~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      ++.+... +-.|. ...    ..-.+-++...|+..++++.|+.+...+.+....+--.+.++|...+++++|+.+++++
T Consensus       274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~  353 (822)
T PRK14574        274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL  353 (822)
T ss_pred             HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3333321 11121 111    11223344555666666666666665554444445555666666666666666666665


Q ss_pred             HHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHhcCChH
Q 006012          502 QERG-----YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-----------LP--NV-VTYTTLVDIYGQSGRFD  562 (664)
Q Consensus       502 ~~~~-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----------~p--~~-~~~~~li~~~~~~g~~~  562 (664)
                      ....     ..++......|..++...+++++|..+++++.+...           .|  |- ..+..++..+...|++.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~  433 (822)
T PRK14574        354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP  433 (822)
T ss_pred             hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence            4432     122333345556666666666666666666655211           11  11 22233444555566665


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006012          563 DAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDK  641 (664)
Q Consensus       563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~  641 (664)
                      +|++.++.           +... -+-|......+.+.+...|++.+|.+.++.+..  +.| +..+....+.++...|+
T Consensus       434 ~Ae~~le~-----------l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e  499 (822)
T PRK14574        434 TAQKKLED-----------LSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQE  499 (822)
T ss_pred             HHHHHHHH-----------HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhh
Confidence            55555332           2221 122444555666666666666666666644443  233 33445555556666666


Q ss_pred             HhHHHHHH
Q 006012          642 FHKVFSSY  649 (664)
Q Consensus       642 ~~~A~~~~  649 (664)
                      +++|..+.
T Consensus       500 ~~~A~~~~  507 (822)
T PRK14574        500 WHQMELLT  507 (822)
T ss_pred             HHHHHHHH
Confidence            66665544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.78  E-value=7.8e-14  Score=147.47  Aligned_cols=492  Identities=14%  Similarity=0.091  Sum_probs=291.1

Q ss_pred             hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012          143 IDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-------SQRQRLTPLTYNALISACARNDDLEKALNL  215 (664)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  215 (664)
                      .+.|.+.|..+++..  |++....---.......+++..|+..       .....+|  ....+..++.+.|+.+.|+..
T Consensus       146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a  221 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLA  221 (1018)
T ss_pred             HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHH
Confidence            578888888888876  55433332233344455677777765       1122233  233445677899999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSS---LLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ  292 (664)
Q Consensus       216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~---~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~  292 (664)
                      |.+..+.+  |+.+.-...+ +..+....+..   .+.+++......+ .-++.+.+.|.+.|.-.|++..+..+...+.
T Consensus       222 ~~ralqLd--p~~v~alv~L-~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai  297 (1018)
T KOG2002|consen  222 FERALQLD--PTCVSALVAL-GEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI  297 (1018)
T ss_pred             HHHHHhcC--hhhHHHHHHH-HHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            99998864  4322211111 11111111111   1223333333322 5678888999999999999999999998887


Q ss_pred             hCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012          293 GVGLS--PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE  370 (664)
Q Consensus       293 ~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  370 (664)
                      ..-..  .-..+|..+.++|-..|++++|...|.+..+....--...+..|.+.|.+.|+++.+...|+...+... -+.
T Consensus       298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~  376 (1018)
T KOG2002|consen  298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNY  376 (1018)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chH
Confidence            64311  124568889999999999999999998887753322244556788999999999999999999987642 356


Q ss_pred             HHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHH
Q 006012          371 HTYSLLIDAYANAG----RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM----KSSGVEPDTHF  442 (664)
Q Consensus       371 ~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~~~~~~  442 (664)
                      .+...|...|+..+    ..+.|..++.+..+.. +.|...|-.+...+-...-+.. +.+|...    ...+-.+....
T Consensus       377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~  454 (1018)
T KOG2002|consen  377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEV  454 (1018)
T ss_pred             HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence            77777877787775    5567777777766543 4566777777666665544433 6555443    34455577788


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHH
Q 006012          443 YNVMIDTFGKYNCLHHAMAAFDRMLSE---GIEPDT------ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC-TTT  512 (664)
Q Consensus       443 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t  512 (664)
                      .|.+...+...|+++.|...|......   ...++.      .+--.+...+-..++.+.|.+.|..+.+..  |+ +..
T Consensus       455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~  532 (1018)
T KOG2002|consen  455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDA  532 (1018)
T ss_pred             HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHH
Confidence            888888888888888888888877654   112222      122223444555667777777777776653  32 223


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------------------
Q 006012          513 YNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-----------------------  569 (664)
Q Consensus       513 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-----------------------  569 (664)
                      |..++......++..+|...++.....+ .-++..++.+...+.+...+..|.+-|+                       
T Consensus       533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~  611 (1018)
T KOG2002|consen  533 YLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI  611 (1018)
T ss_pred             HHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence            3333322233455555666665555432 1133333333333333333222222111                       


Q ss_pred             --------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          570 --------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKA  635 (664)
Q Consensus       570 --------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a  635 (664)
                                    +..++|+..|.+..+... -|...-|.+.-+++..|++.+|..+|.+..+.. .-+..+|..+..+
T Consensus       612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~  689 (1018)
T KOG2002|consen  612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHC  689 (1018)
T ss_pred             HHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHH
Confidence                          333455555555554321 122333445555555566666666666555532 2233455555555


Q ss_pred             HHhcCCHhHHHHHHH
Q 006012          636 LIRVDKFHKVFSSYL  650 (664)
Q Consensus       636 ~~~~g~~~~A~~~~~  650 (664)
                      |..+|+|..|++.|+
T Consensus       690 ~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  690 YVEQGQYRLAIQMYE  704 (1018)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666666555

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=6e-14  Score=135.08  Aligned_cols=347  Identities=15%  Similarity=0.157  Sum_probs=252.6

Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCH
Q 006012          186 SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDG  265 (664)
Q Consensus       186 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~  265 (664)
                      .+..+.+..++.+||.++|+-...++|.+++++......+.+..+||.+|.+-.-..      .+++..+|...++.||.
T Consensus       200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------~K~Lv~EMisqkm~Pnl  273 (625)
T KOG4422|consen  200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------GKKLVAEMISQKMTPNL  273 (625)
T ss_pred             HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------cHHHHHHHHHhhcCCch
Confidence            555677888999999999999999999999999998888899999999997654322      36899999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCCC---
Q 006012          266 QLLNDVIVGFAKAGDASKA----MRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE-AEAVFEELKE----SGLKP---  333 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~~~~p---  333 (664)
                      .++|+++.+..+.|+++.|    ++++.+|++.|+.|...+|..+|..+++.++..+ |...+.++..    +..+|   
T Consensus       274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p  353 (625)
T KOG4422|consen  274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP  353 (625)
T ss_pred             HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence            9999999999999988765    5677899999999999999999999999988754 4444444432    22333   


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 006012          334 -RTKAYNALLKGYVKMGYLKDAEFVVSEMERSG----VLPD---EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS  405 (664)
Q Consensus       334 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~  405 (664)
                       |...|...+..|.+..+.+.|.++..-+....    +.|+   ..-|..+....|+....+.-...|+.|.-.-.-|+.
T Consensus       354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~  433 (625)
T KOG4422|consen  354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS  433 (625)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence             55677888889999999999999887765321    1222   344667888889999999999999999887778899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-C--------HH-----HHHHHH-------H
Q 006012          406 FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN-C--------LH-----HAMAAF-------D  464 (664)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~--------~~-----~A~~~~-------~  464 (664)
                      .+...++++..-.+.++-.-+++.+++..|...+.....-++..+++.. .        +.     -|..++       .
T Consensus       434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~  513 (625)
T KOG4422|consen  434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI  513 (625)
T ss_pred             hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999988775544444444444444433 1        00     011111       1


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       465 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      +|.+.  .......+.+...+.+.|+.++|.++|..+.+++ -.|   ......-+++...+.+...+|...++-|...+
T Consensus       514 R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  514 RQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            22222  3344455666666777777777777777775442 222   22233345555556666677777777665543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.74  E-value=2.7e-12  Score=142.17  Aligned_cols=428  Identities=11%  Similarity=0.035  Sum_probs=276.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHcccCCHHHHHHhhC-CCC---CCHHHHHHHHHHHHHcCCHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYE-LLYSILIHALGRSEKLYEAFLLSQ-RQR---LTPLTYNALISACARNDDLEKAL  213 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~  213 (664)
                      +.|+++.|+..+..+.+..  |.+. .++ .++..++..|+..+|+...+ -..   .+.....++...|...|++++|+
T Consensus        46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            6778888888888888776  4442 333 77777777888888877611 112   22333334455777778888888


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG  293 (664)
Q Consensus       214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~  293 (664)
                      ++|+++.+..  |+.                                    ...+..++..|...++.++|++.++.+..
T Consensus       123 ely~kaL~~d--P~n------------------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~  164 (822)
T PRK14574        123 ALWQSSLKKD--PTN------------------------------------PDLISGMIMTQADAGRGGVVLKQATELAE  164 (822)
T ss_pred             HHHHHHHhhC--CCC------------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence            8888887753  322                                    22223445555666677777777776665


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY  373 (664)
Q Consensus       294 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  373 (664)
                      .  .|+...+..++..+...++..+|++.++++.+... -+...+..++..+.+.|-...|.++.++-... +.+...-+
T Consensus       165 ~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~  240 (822)
T PRK14574        165 R--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ  240 (822)
T ss_pred             c--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH
Confidence            4  34444444444444445555557777777766532 24556666666777777666666555543211 11111000


Q ss_pred             ------HHHHHHH-----HHcCC---HHHHHHHHHHHHhc-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          374 ------SLLIDAY-----ANAGR---WESARIVLKEMEVS-HAKPN-SF----IYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       374 ------~~li~~~-----~~~g~---~~~A~~l~~~m~~~-~~~~~-~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                            ..+++.-     ....+   .+.|+.-++.+... +..|. ..    ...-.+.++...+++.++++.++.|..
T Consensus       241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~  320 (822)
T PRK14574        241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA  320 (822)
T ss_pred             HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence                  0011000     01122   34455555555442 11132 12    223446678888999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--
Q 006012          434 SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-----IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY--  506 (664)
Q Consensus       434 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--  506 (664)
                      .+.+.-..+-..+.++|...++.++|+.++..+....     ..++......|.-+|...+++++|..+++.+.+...  
T Consensus       321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~  400 (822)
T PRK14574        321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ  400 (822)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence            8766556688889999999999999999999987642     123344457788899999999999999999987311  


Q ss_pred             ---------C--CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012          507 ---------F--PCTT-TYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ  574 (664)
Q Consensus       507 ---------~--p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  574 (664)
                               .  ||-. .+..++..+...|++.+|++.++++....+ -|......+.+.+...|.+.+|++.++     
T Consensus       401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k-----  474 (822)
T PRK14574        401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELK-----  474 (822)
T ss_pred             EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-----
Confidence                     1  1222 234456778899999999999999988653 388899999999999999999888753     


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          575 AVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV  627 (664)
Q Consensus       575 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  627 (664)
                            ....  +.|+ ..+....+.++...|++++|..+.+...+  ..|+..
T Consensus       475 ------~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~  518 (822)
T PRK14574        475 ------AVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI  518 (822)
T ss_pred             ------HHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence                  2222  3455 44667788888889999999999998887  456544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.70  E-value=5.2e-11  Score=120.93  Aligned_cols=487  Identities=11%  Similarity=0.085  Sum_probs=269.5

Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMS  217 (664)
Q Consensus       142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  217 (664)
                      +...=.+++..++++-  |.++.+|..-+..    ...++|+.+    .+-.+-+...|    -+|++..-|+.|..+++
T Consensus       361 ~~~~K~RVlRKALe~i--P~sv~LWKaAVel----E~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLN  430 (913)
T KOG0495|consen  361 DTKNKKRVLRKALEHI--PRSVRLWKAAVEL----EEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLN  430 (913)
T ss_pred             HHHHHHHHHHHHHHhC--CchHHHHHHHHhc----cChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHH
Confidence            3344455666666654  5555555544432    223334433    11122222223    23445555566666666


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          218 KMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKL----YKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG  293 (664)
Q Consensus       218 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l----~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~  293 (664)
                      +.++. ++-+...|.+....=-..|+.  ..+.++    ...+...|+..+...|-.=...|-..|.+-.+..+......
T Consensus       431 kaRe~-iptd~~IWitaa~LEE~ngn~--~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig  507 (913)
T KOG0495|consen  431 KAREI-IPTDREIWITAAKLEEANGNV--DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG  507 (913)
T ss_pred             HHHhh-CCCChhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Confidence            65553 444555554444433444433  222232    23344456666666666666666666666666666665555


Q ss_pred             CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          294 VGLSP--KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEH  371 (664)
Q Consensus       294 ~g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  371 (664)
                      .|+.-  -..||+.-.+.|.+.+-++-|..+|...++. .+-+...|......--..|..+....++++....-. -...
T Consensus       508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~  585 (913)
T KOG0495|consen  508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEI  585 (913)
T ss_pred             hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchh
Confidence            55432  2345666666666666666666666665553 222445555555555555666666666666655422 2344


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006012          372 TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFG  451 (664)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  451 (664)
                      .|-....-+-..|++..|..++.+..+.. +.+...|...+..-....+++.|..+|.+....  .|+..+|.--+...-
T Consensus       586 lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er  662 (913)
T KOG0495|consen  586 LWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER  662 (913)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence            45555555555666666666666665543 235555666666666666666666666665543  344455544444444


Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR  531 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  531 (664)
                      -.+..++|.+++++.++.- +.-...|-.+...+-+.++.+.|.+.|..-.+. ++-....|..+.+.=.+.|+.-.|..
T Consensus       663 ~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~  740 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS  740 (913)
T ss_pred             HhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence            4555666666666655531 122345555555666666666666665554443 23344455555555555566666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH----------HHHHH----------HHHHHHCCCCCCH
Q 006012          532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD----------QAVNA----------FRVMRTDGLKPSN  591 (664)
Q Consensus       532 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~a~~~----------~~~m~~~g~~p~~  591 (664)
                      ++++..-.+.+ +...|...|++=.+.|+.+.|..++...++          +|+.+          .+.|.+  +.-|.
T Consensus       741 ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk--ce~dp  817 (913)
T KOG0495|consen  741 ILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK--CEHDP  817 (913)
T ss_pred             HHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh--ccCCc
Confidence            66666555443 555666666666666666666554431111          11111          112222  44567


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012          592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF  652 (664)
Q Consensus       592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~  652 (664)
                      .....+...|....++++|.+.|.+.+..+ +.+..+|.-+..-+.+.|.-+.-.++|..+
T Consensus       818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  818 HVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            777788888888899999999999999843 334688888889899999877777777744

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=1.6e-13  Score=132.94  Aligned_cols=435  Identities=15%  Similarity=0.128  Sum_probs=267.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCCChHHHHHHHHHHHhC----CCCCCHHHHH
Q 006012          195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSL-VIQSLTRTNKIDSSLLQKLYKEIECD----KIELDGQLLN  269 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~~~~~~l~~~~~~~----~~~~d~~~~~  269 (664)
                      +...|..-|..+..+.+|+..|+-+.+....|+.-.+.. +-+.+.+...+.  .+.+.|......    +-.....+.|
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fs--kaikfyrmaldqvpsink~~rikil~  280 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFS--KAIKFYRMALDQVPSINKDMRIKILN  280 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHH--HHHHHHHHHHhhccccchhhHHHHHh
Confidence            444556667777888888888888887776676543321 112223333332  223444433322    2223345667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------CHHH
Q 006012          270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP------------RTKA  337 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p------------~~~~  337 (664)
                      .+...|.+.|+++.|+..|+...+.  .|+..+-..|+-++..-|+.++..+.|.+|+.....|            +...
T Consensus       281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l  358 (840)
T KOG2003|consen  281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL  358 (840)
T ss_pred             hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence            7777788999999999999987765  5888776667777777899999999999998643333            2222


Q ss_pred             HHHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHHHcCCHHHH
Q 006012          338 YNALL-----KGYVKMG--YLKDAEFVVSEMERSGVLPDEHT-------------Y--------SLLIDAYANAGRWESA  389 (664)
Q Consensus       338 ~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~-------------~--------~~li~~~~~~g~~~~A  389 (664)
                      .|..|     .-.-+..  +.++++-.--+++.--+.|+-..             +        -.-..-|.+.|+++.|
T Consensus       359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a  438 (840)
T KOG2003|consen  359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA  438 (840)
T ss_pred             HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence            22222     1121111  11222222122221112222100             0        0112347789999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012          390 RIVLKEMEVSHAKPNSFIYSRILAGYR--DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML  467 (664)
Q Consensus       390 ~~l~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  467 (664)
                      +++++-+.+.+-+.-...-+.|-..+.  ...++..|.+.-+...... +-+....+.-.......|++++|.+.|.+.+
T Consensus       439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal  517 (840)
T KOG2003|consen  439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL  517 (840)
T ss_pred             HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence            999998876654433333333322222  2346777777766655432 2333333333333455799999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT  547 (664)
Q Consensus       468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  547 (664)
                      ...-......||.=+ .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.+++.+.... +..|+.+
T Consensus       518 ~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i  594 (840)
T KOG2003|consen  518 NNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI  594 (840)
T ss_pred             cCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence            654333333344322 466789999999999887543 2346778888889999999999999999887764 5568999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh
Q 006012          548 YTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAF-GE  603 (664)
Q Consensus       548 ~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~  603 (664)
                      .+.|.+.|-+.|+-..|.++.-                       ...++++.+|++..-  +.|+..-|..|+..| .+
T Consensus       595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr  672 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR  672 (840)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence            9999999999999999887643                       344555555555443  456666666665443 34


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          604 DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD  640 (664)
Q Consensus       604 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g  640 (664)
                      .|++.+|+.+++..... ++.|.....-|++.+...|
T Consensus       673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence            56666666666666543 5556666666666666555

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.65  E-value=4e-10  Score=119.16  Aligned_cols=487  Identities=13%  Similarity=0.117  Sum_probs=288.9

Q ss_pred             CCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012          140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNL  215 (664)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  215 (664)
                      .|+.++|..++..++++.  |.+...|..|...|-..|+...+...    ....+.|..-|-.+..-....|++++|.-.
T Consensus       152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            489999999999999998  67788999999999999999988765    555677778999999999999999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 006012          216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLND----VIVGFAKAGDASKAMRFLGMA  291 (664)
Q Consensus       216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~----li~~~~~~g~~~~A~~~~~~~  291 (664)
                      |.+..+.. +++...+---...|-+.|+...  +..-|..+.....+.|..-+..    .++.|...++-+.|.+.++..
T Consensus       230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~--Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKR--AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHhcC-CcchHHHHHHHHHHHHhChHHH--HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999874 3343333333445666776643  3355666655443333333333    345566677778888887776


Q ss_pred             HhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHH
Q 006012          292 QGVG-LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY--------------------------NALLKG  344 (664)
Q Consensus       292 ~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~--------------------------~~li~~  344 (664)
                      ...+ -..+...++.++..+.+...++.|......+......+|..-|                          .-++-+
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic  386 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC  386 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence            6522 2334556778888888888888888877777652222222111                          123333


Q ss_pred             HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          345 YVKMGYLKDAEFVVSEMERSG--VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ  422 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~  422 (664)
                      +......+....+.....+..  +.-+...|.-+.++|.+.|++.+|+.+|..+.....--+...|..+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            444444444444555555544  233455666677777777777777777777776655555667777777777777777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS--------EGIEPDTITWNTLIDCHFKCGRYDRA  494 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~~~~~~~~~li~~~~~~g~~~~A  494 (664)
                      .|.+.|+...... +.+...-..|-..+-+.|+.++|.+++..+..        .+..|+....-.....|.+.|+.++=
T Consensus       467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f  545 (895)
T KOG2076|consen  467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF  545 (895)
T ss_pred             HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence            7777777766543 33445555566666777777777777766442        12233333333444455555665554


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012          495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ  574 (664)
Q Consensus       495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  574 (664)
                      +.+...|+....      ...++  +   .+-.++...-  ....+..-...+...++.+-.+.++..........    
T Consensus       546 i~t~~~Lv~~~~------~~~~~--f---~~~~k~r~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d----  608 (895)
T KOG2076|consen  546 INTASTLVDDFL------KKRYI--F---PRNKKKRRRA--IAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD----  608 (895)
T ss_pred             HHHHHHHHHHHH------HHHHh--c---chHHHHHHHh--hccccccccchhHHHHHHHHhccCchHHhhhcccc----
Confidence            444444433210      00000  0   0000000000  00001122233334444444444443333222110    


Q ss_pred             HHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHhHHHH
Q 006012          575 AVNAFRVMRTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENGL-KPDVV----TYTTLMKALIRVDKFHKVFS  647 (664)
Q Consensus       575 a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~a~~~~g~~~~A~~  647 (664)
                      . ..+..-...|+.-+..  .+.-++..+++.+++++|+.+...+.+... .-+..    .-...+.+.+..+++.+|+.
T Consensus       609 ~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~  687 (895)
T KOG2076|consen  609 G-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS  687 (895)
T ss_pred             h-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            0 1122222233333322  456678889999999999999999987432 22222    23456667778899999998


Q ss_pred             HHH
Q 006012          648 SYL  650 (664)
Q Consensus       648 ~~~  650 (664)
                      .++
T Consensus       688 ~lR  690 (895)
T KOG2076|consen  688 YLR  690 (895)
T ss_pred             HHH
Confidence            887

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.61  E-value=7.3e-10  Score=112.80  Aligned_cols=482  Identities=12%  Similarity=0.057  Sum_probs=349.0

Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHH-HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEA-FLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKM  219 (664)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  219 (664)
                      ...+.|..+...++++.  |.++.+|-.-+..=.....-... ++..+-.+.++..|-..+    ...+.+.|.-++.+.
T Consensus       329 hp~d~aK~vvA~Avr~~--P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rA  402 (913)
T KOG0495|consen  329 HPPDVAKTVVANAVRFL--PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERA  402 (913)
T ss_pred             CChHHHHHHHHHHHHhC--CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHH
Confidence            34577888888888875  66666654433321111111111 111344566677776554    455667799999988


Q ss_pred             HHcCCCCC-hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhC
Q 006012          220 RQDGYHCD-FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGM----AQGV  294 (664)
Q Consensus       220 ~~~g~~p~-~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~  294 (664)
                      .+.  .|. ...|    -++++...+  .-+++++....+ .++.+..+|-+-...=-..|+.+....+.++    +...
T Consensus       403 vec--cp~s~dLw----lAlarLetY--enAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n  473 (913)
T KOG0495|consen  403 VEC--CPQSMDLW----LALARLETY--ENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN  473 (913)
T ss_pred             HHh--ccchHHHH----HHHHHHHHH--HHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Confidence            875  333 2333    344454444  335688887765 4678888888877777888999998888764    4568


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHT  372 (664)
Q Consensus       295 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  372 (664)
                      |+..+...|..=...|-..|..-.+..+....+..|+.-  ...||+.-.+.|.+.+.++-|..+|...++.-. .+...
T Consensus       474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~sl  552 (913)
T KOG0495|consen  474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSL  552 (913)
T ss_pred             ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHH
Confidence            899999999999999999999999999999998877753  357899999999999999999999999988633 36778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012          373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK  452 (664)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  452 (664)
                      |...+..--..|..++...+|++.... ++-....|......+-..|+...|..++....+.. +.+...|-.-+.....
T Consensus       553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~e  630 (913)
T KOG0495|consen  553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFE  630 (913)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhc
Confidence            888887777889999999999999865 34566677777788888999999999999988765 3477888999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL  532 (664)
Q Consensus       453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~  532 (664)
                      ..+++.|..+|.+....  .++...|.--+...--.+..++|++++++.++.- +.-...|..+.+.+.+.++.+.|.+.
T Consensus       631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999998865  5777888777777777899999999999998873 44456788888999999999999998


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCCCC
Q 006012          533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVMRTDGLKP  589 (664)
Q Consensus       533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m~~~g~~p  589 (664)
                      |..-.+. +.-....|..|.+.=-+.|.+-.|..+++                       |..++|..+..+..+. +..
T Consensus       708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~  785 (913)
T KOG0495|consen  708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPS  785 (913)
T ss_pred             HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc
Confidence            8776654 33356788888888899999999999987                       3333343333333322 222


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      +...|..-|....+.++....+..+++     ..-|+....++...+....++++|++-|+
T Consensus       786 sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~  841 (913)
T KOG0495|consen  786 SGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFE  841 (913)
T ss_pred             cchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444443333332221     34466666677777777777888877776

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.56  E-value=1e-10  Score=123.47  Aligned_cols=355  Identities=15%  Similarity=0.140  Sum_probs=246.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA  354 (664)
Q Consensus       275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  354 (664)
                      ....|++++|.+++.++++.. +.+...|.+|...|-+.|+.+++...+-..-..+. -|...|..+.....+.|.+++|
T Consensus       149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHH
Confidence            334488888888888888764 55778888888888888888888877755544432 2667888888888888888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHH
Q 006012          355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFI----YSRILAGYRDRGEWQRTFQVLKE  430 (664)
Q Consensus       355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~~a~~~~~~  430 (664)
                      .-.|.+.++.... +...+---+..|-+.|+...|..-|.++.+...+.+..-    -..++..+...++.+.|++.++.
T Consensus       227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8888888876543 555555567778888888888888888877653222222    22345566677777888888777


Q ss_pred             HHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHH
Q 006012          431 MKSS-GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG---------------------------IEPDTITWNTLI  482 (664)
Q Consensus       431 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~~~~~~~~~li  482 (664)
                      .... +-..+...++.++..|.+..+++.|......+....                           ..++... --++
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~  384 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM  384 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence            6552 223455667777888888888888887777665511                           1122222 1233


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          483 DCHFKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR  560 (664)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  560 (664)
                      -++......+....+..-+.+.+  ..-+...|.-+.+++...|++.+|+.++..+.....--+..+|-.+..+|...|.
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e  464 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE  464 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence            34444444555555555555555  3345567888888999999999999999999887544567888899999999999


Q ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHH
Q 006012          561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMK--------ENGLKPDVVTYTT  631 (664)
Q Consensus       561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~  631 (664)
                      +++|++.++..           ..  ..|+. ..-.+|-..+.+.|++++|.+.++.+.        ..+..|+......
T Consensus       465 ~e~A~e~y~kv-----------l~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~  531 (895)
T KOG2076|consen  465 YEEAIEFYEKV-----------LI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH  531 (895)
T ss_pred             HHHHHHHHHHH-----------Hh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence            99888875532           22  34543 345567777888899999999988853        3346667777777


Q ss_pred             HHHHHHhcCCHhHHH
Q 006012          632 LMKALIRVDKFHKVF  646 (664)
Q Consensus       632 l~~a~~~~g~~~~A~  646 (664)
                      ..+.|.+.|+.++=.
T Consensus       532 r~d~l~~~gk~E~fi  546 (895)
T KOG2076|consen  532 RCDILFQVGKREEFI  546 (895)
T ss_pred             HHHHHHHhhhHHHHH
Confidence            888888888887733

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.1e-10  Score=111.20  Aligned_cols=361  Identities=12%  Similarity=0.093  Sum_probs=261.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHH
Q 006012          188 RQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQL  267 (664)
Q Consensus       188 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~  267 (664)
                      +...|..-+......+.+.|....|+..|......- +-.-..|..+...+...         ....... .+.+.|...
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~---------e~~~~l~-~~l~~~~h~  227 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDI---------EILSILV-VGLPSDMHW  227 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchH---------HHHHHHH-hcCcccchH
Confidence            344566677777777889999999999999887641 22333444433322211         1111111 122222111


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 006012          268 --LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNALLK  343 (664)
Q Consensus       268 --~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~li~  343 (664)
                        ---+..+|-...+.+++++-.+.....|++.+...-+....+.-...++++|+.+|+++.+...-  -|..+|..++-
T Consensus       228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY  307 (559)
T KOG1155|consen  228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY  307 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence              11234566667788999999999998887666665566666677889999999999999987321  26778877765


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR  423 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~  423 (664)
                      .--...++.---+..-.+-+    --+.|.-.+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|...++...
T Consensus       308 v~~~~skLs~LA~~v~~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A  382 (559)
T KOG1155|consen  308 VKNDKSKLSYLAQNVSNIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA  382 (559)
T ss_pred             HHhhhHHHHHHHHHHHHhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence            54333222211111111111    234567778888999999999999999998876 4566789999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012          424 TFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE  503 (664)
Q Consensus       424 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  503 (664)
                      |++-++...+.. +.|-..|-.|.++|.-.+...-|+-.|++..+.. +.|...|.+|.++|.+.++.++|++.|++...
T Consensus       383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            999999999875 6788999999999999999999999999998764 56899999999999999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 006012          504 RGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLPN--VVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       504 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      -| ..+...+..|.+.+.+.++.++|.+.+.+-++.    |..-+  .....-|..-+.+.+++++|..+
T Consensus       461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y  529 (559)
T KOG1155|consen  461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY  529 (559)
T ss_pred             cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            87 446789999999999999999999999887762    33322  12222245567778888877653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.55  E-value=3.4e-11  Score=125.36  Aligned_cols=279  Identities=13%  Similarity=0.121  Sum_probs=213.6

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 006012          278 AGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY--NALLKGYVKMGYLKDA  354 (664)
Q Consensus       278 ~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a  354 (664)
                      .|++++|.+.+....+..  ++ ...|........+.|+++.|.+.+.++.+.  .|+....  ......+...|+.+.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            599999998887765532  22 333444455558899999999999999875  3443322  2346788889999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 006012          355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-------FIYSRILAGYRDRGEWQRTFQV  427 (664)
Q Consensus       355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~  427 (664)
                      ...++++.+.... +......+...|.+.|++++|.+++..+.+....++.       .+|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999887644 6788889999999999999999999999887654322       1333344444445556666666


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006012          428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF  507 (664)
Q Consensus       428 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  507 (664)
                      ++.+-+. .+.+......+...+...|+.++|.+++++..+.  .++...  .++.+.+..++.+++++..+...+.. +
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P  325 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G  325 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence            6665432 2457888889999999999999999999999874  455422  23344456699999999999999876 5


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       508 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      -|...+..+.+.|.+.+++++|.+.|+.+.+.  .|+..++..+...+.+.|+.++|.++++
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            67778889999999999999999999999984  6899999999999999999999988865

>TIGR00540 hemY_coli hemY protein

Probab=99.54  E-value=4.8e-11  Score=124.94  Aligned_cols=289  Identities=13%  Similarity=0.057  Sum_probs=211.1

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA  354 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  354 (664)
                      ...|+++.|.+.+.+..+.  .|+ ...+-....+..+.|+.+.|.+.+.+..+....++....-.....+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            3569999999999887765  344 4455566788888999999999999987654333333444457888889999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHH
Q 006012          355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGY---RDRGEWQRTFQVLKEM  431 (664)
Q Consensus       355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~m  431 (664)
                      ...++.+.+..+. +..++..+...|...|++++|.+++..+.+.+..+..........++   ...+..+++.+.+..+
T Consensus       173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999988644 67788899999999999999999999999886543332211111221   2233333334444444


Q ss_pred             HHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012          432 KSSGV---EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT---WNTLIDCHFKCGRYDRAEELFEEMQERG  505 (664)
Q Consensus       432 ~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~  505 (664)
                      .+...   +.+...+..+...+...|+.++|.+++++..+..  ||...   ...........++.+.+.+.++...+..
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            43321   2378888999999999999999999999999864  33331   1222222344577888999998888764


Q ss_pred             CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012          506 YFPCT--TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEG  570 (664)
Q Consensus       506 ~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  570 (664)
                       +-|.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++.
T Consensus       330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             4444  567789999999999999999999644444578999999999999999999999988763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.53  E-value=1.3e-10  Score=121.09  Aligned_cols=247  Identities=11%  Similarity=0.042  Sum_probs=131.4

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012          381 ANAGRWESARIVLKEMEVSHAKPNSF--IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH  458 (664)
Q Consensus       381 ~~~g~~~~A~~l~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  458 (664)
                      .+.|+.+.|...+.++.+..  |+..  ........+...|+++.|.+.++++.+.. +-+......+...|.+.|++++
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence            45555555555555554432  2221  11122344555555555555555555443 3344555555555555566666


Q ss_pred             HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          459 AMAAFDRMLSEGIEPDT-------ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR  531 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  531 (664)
                      |.+++..+.+.+..++.       ..|..++.......+.+...++++.+.+.- +.+......+...+...|+.++|.+
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            66555555554432111       122222332233334445555555543332 3456666666667777777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006012          532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEA  610 (664)
Q Consensus       532 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A  610 (664)
                      ++.+..+.  .|+....  ++.+....++.+++++.++           ...+.  .|+ ...+..+...|.+.|++++|
T Consensus       285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e-----------~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A  347 (398)
T PRK10747        285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLR-----------QQIKQ--HGDTPLLWSTLGQLLMKHGEWQEA  347 (398)
T ss_pred             HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHH-----------HHHhh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            77666653  3343221  2222234466666555433           22221  233 34566667777777777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          611 FAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       611 ~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      .+.|+.+.+  ..|+..++..+..++.+.|+.++|.++|+
T Consensus       348 ~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        348 SLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             HHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            777777776  46777777777777777777777776666

>TIGR00540 hemY_coli hemY protein

Probab=99.51  E-value=7.8e-11  Score=123.34  Aligned_cols=257  Identities=8%  Similarity=-0.050  Sum_probs=128.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006012          378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH  457 (664)
Q Consensus       378 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  457 (664)
                      ..+.+.|+.+.|.+.+.+..+....+...........+...|+++.|...++.+.+.. +-+..+...+...+.+.|+++
T Consensus       126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence            3344444444444444444332211111222223444444455555555555544443 223344445555555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          458 HAMAAFDRMLSEGIEPDTITWN-TLIDCH---FKCGRYDRAEELFEEMQERG---YFPCTTTYNIMINLLGEQERWEDVK  530 (664)
Q Consensus       458 ~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~  530 (664)
                      +|.+.+..+.+.+.. +...+. .-..++   ...+..+++.+.+..+.+..   .+.+...+..+...+...|+.++|.
T Consensus       205 ~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~  283 (409)
T TIGR00540       205 ALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ  283 (409)
T ss_pred             HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence            555555555544322 211111 111111   12222222233333333321   1125666666667777777777777


Q ss_pred             HHHHHHHHCCCCCCHHHH-HHHHHHH--HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhc
Q 006012          531 RLLGNMRAQGLLPNVVTY-TTLVDIY--GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN---LALNSLINAFGED  604 (664)
Q Consensus       531 ~~~~~m~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~  604 (664)
                      +++++..+..  ||.... ..++..+  ...++.+.+.+.++           +..+  ..|+.   ....++...|.+.
T Consensus       284 ~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e-----------~~lk--~~p~~~~~~ll~sLg~l~~~~  348 (409)
T TIGR00540       284 EIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIE-----------KQAK--NVDDKPKCCINRALGQLLMKH  348 (409)
T ss_pred             HHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHH-----------HHHH--hCCCChhHHHHHHHHHHHHHc
Confidence            7777776643  222210 0122222  22344444444322           2222  13433   4456788888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012          605 QRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLF  651 (664)
Q Consensus       605 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~  651 (664)
                      |++++|.+.|+........|+...+..+...+.+.|+.++|.++|+.
T Consensus       349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888888888533333678888888888888888888888888873

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.51  E-value=1.4e-13  Score=136.68  Aligned_cols=262  Identities=17%  Similarity=0.168  Sum_probs=101.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          270 DVIVGFAKAGDASKAMRFLGMAQGVG-LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      .+...+.+.|++++|+++++...... .+.|..-|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            44667778888899988886544332 1334555666666777788888888888888876543 55567777776 688


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRGEWQRTFQV  427 (664)
Q Consensus       349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~  427 (664)
                      +++++|.+++....+..  ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888888887765542  456667778888888888888888888876532 345667777888888888888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006012          428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF  507 (664)
Q Consensus       428 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  507 (664)
                      +++..+.. +.|....+.++..+...|+.+++..++....+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p  245 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P  245 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence            88887763 3356777788888888888888777777776543 3455567778888888888888888888887765 5


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       508 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      .|......+..++...|+.++|.++..+..+
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5777778888888888888888887776543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=4.1e-10  Score=110.36  Aligned_cols=364  Identities=14%  Similarity=0.061  Sum_probs=242.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--H
Q 006012          260 KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK--A  337 (664)
Q Consensus       260 ~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~  337 (664)
                      +...|...+-.....+.+.|..+.|+..|......- +-.-..|..|...+.   +.+.    ...+.. +.+.|..  .
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~e~----~~~l~~-~l~~~~h~M~  229 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DIEI----LSILVV-GLPSDMHWMK  229 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hHHH----HHHHHh-cCcccchHHH
Confidence            345555555555556667788888888887766421 223334443333221   1111    111111 1221211  1


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 006012          338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGY  415 (664)
Q Consensus       338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~ll~~~  415 (664)
                      =--+..++-...+.+++.+-.+.....|+..+...-+....+.-...++++|+.+|+++.+...  --|..+|+.++..-
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~  309 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence            1123445555667788888888888888765555555555556677889999999999987642  23556777666443


Q ss_pred             HhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012          416 RDRGEWQ-RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA  494 (664)
Q Consensus       416 ~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  494 (664)
                      ....+.. -|..++. +  .  +-.+.|+..+.+-|.-.++.++|...|++.++.+ +.....|+.+.+-|....+...|
T Consensus       310 ~~~skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA  383 (559)
T KOG1155|consen  310 NDKSKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA  383 (559)
T ss_pred             hhhHHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence            3322211 1111111 1  1  3345677778888888899999999999999876 34567888889999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012          495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ  574 (664)
Q Consensus       495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  574 (664)
                      .+-+++.++-+ +.|...|-.|.++|.-.+...-|+-.|++..... +-|...|.+|.++|.+.++.++|++++.+.   
T Consensus       384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra---  458 (559)
T KOG1155|consen  384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA---  458 (559)
T ss_pred             HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH---
Confidence            99999999887 7788899999999999999999999999998853 337899999999999999999999886532   


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHhHHHHH
Q 006012          575 AVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE----NGLKPDV--VTYTTLMKALIRVDKFHKVFSS  648 (664)
Q Consensus       575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~a~~~~g~~~~A~~~  648 (664)
                              ...| ..+...+..|...|-+.++.++|.+++++-++    .|...+.  ....-|..-+.+.+++++|..+
T Consensus       459 --------i~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y  529 (559)
T KOG1155|consen  459 --------ILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY  529 (559)
T ss_pred             --------Hhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence                    2222 22456788899999999999999998887765    2433332  2223356667788888888775


Q ss_pred             HHHH
Q 006012          649 YLFF  652 (664)
Q Consensus       649 ~~~~  652 (664)
                      --.-
T Consensus       530 a~~~  533 (559)
T KOG1155|consen  530 ATLV  533 (559)
T ss_pred             HHHH
Confidence            5433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.4e-08  Score=99.97  Aligned_cols=420  Identities=13%  Similarity=0.084  Sum_probs=313.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhh----CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLS----QRQRLTPLTYNALISACARNDDLEKALN  214 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~  214 (664)
                      +++++..|..+|++++...  ..+..++-.-+.+=.++..+..|+.+.    ...|.-...|...+..=-..|+..-|.+
T Consensus        85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence            4567889999999999876  455567777788888888888888771    1222223466666666677899999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012          215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV  294 (664)
Q Consensus       215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  294 (664)
                      +|++-.+  +.|+...|.+.++.=.+.+..+.  ++.+|+..+-  +.|++..|-.....=.++|.+..|..+|+.+.+.
T Consensus       163 iferW~~--w~P~eqaW~sfI~fElRykeier--aR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~  236 (677)
T KOG1915|consen  163 IFERWME--WEPDEQAWLSFIKFELRYKEIER--ARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF  236 (677)
T ss_pred             HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHH--HHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            9999776  47999999999998888877744  5688888764  3689999998888889999999999999987753


Q ss_pred             -CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHH
Q 006012          295 -GL-SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR--TKAYNALLKGYVKMGYLKDAEFV--------VSEME  362 (664)
Q Consensus       295 -g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~  362 (664)
                       |- .-+...+++....-.+++.++.|.-+|+-.++. ++-+  ...|..+...--+.|+.......        ++.+.
T Consensus       237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v  315 (677)
T KOG1915|consen  237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV  315 (677)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence             20 112344555556666778899999999888775 2223  45566666655566765444333        34444


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-H------HHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 006012          363 RSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-F------IYSRILAGY---RDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       363 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~------~~~~ll~~~---~~~g~~~~a~~~~~~m~  432 (664)
                      +.+. .|-.+|--.++.--..|+.+...++|+..+..- +|-. .      .|.-+=.++   ....+.+.+.++++..+
T Consensus       316 ~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l  393 (677)
T KOG1915|consen  316 SKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL  393 (677)
T ss_pred             HhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4443 377888888888888999999999999998653 4422 1      222121222   45678999999999988


Q ss_pred             HCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012          433 SSGVEPDTHFYNVMIDTF----GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP  508 (664)
Q Consensus       433 ~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  508 (664)
                      +. ++-...|+.-+=-+|    .++.++..|.+++...+  |..|-..++..-|..-.+.+.+|.+.+++++.++.+ +-
T Consensus       394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe  469 (677)
T KOG1915|consen  394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE  469 (677)
T ss_pred             hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence            73 455556666554444    46788999999998876  557899999999999999999999999999999987 66


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 006012          509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQG-LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD  573 (664)
Q Consensus       509 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  573 (664)
                      +..+|......=...|+.+.|..+|.-++... +......|.+.|+-=...|.++.|..+++.+++
T Consensus       470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            77888888888888999999999999999863 333456788888888899999999988775554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=3.1e-08  Score=97.56  Aligned_cols=448  Identities=12%  Similarity=0.053  Sum_probs=317.6

Q ss_pred             CHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCCChHHHHHH
Q 006012          178 KLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFI-NYSLVIQSLTRTNKIDSSLLQKL  252 (664)
Q Consensus       178 ~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~~~~~l  252 (664)
                      .+..|+.+    ......+...|-.-+..=.++..+..|..++++....  -|-+. .|-.-+..=-..|++  +-++++
T Consensus        88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi--~gaRqi  163 (677)
T KOG1915|consen   88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNI--AGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhccc--HHHHHH
Confidence            34445444    3344567779999999999999999999999998875  33321 222222222234565  557899


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 006012          253 YKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES-GL  331 (664)
Q Consensus       253 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~  331 (664)
                      |+....  ..|+...|++.|+.=.+-...+.|..+++..+-  +.|++.+|.-....-.++|....|..+|+...+. |-
T Consensus       164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~  239 (677)
T KOG1915|consen  164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD  239 (677)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence            998875  489999999999999999999999999999876  3699999999999999999999999999988763 11


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCC
Q 006012          332 -KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIV--------LKEMEVSHA  401 (664)
Q Consensus       332 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~~~  401 (664)
                       ..+...+++....-.++..++.|.-+|+-.++.=.+. ....|..+...=-+-|+.......        ++.+...+ 
T Consensus       240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-  318 (677)
T KOG1915|consen  240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-  318 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence             1123445555555556778899999999888763221 144555555555556665544333        33444433 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH--------HHHhccCCHHHHHHHHHHHHHCCC
Q 006012          402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT--HFYNVMI--------DTFGKYNCLHHAMAAFDRMLSEGI  471 (664)
Q Consensus       402 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li--------~~~~~~g~~~~A~~~~~~m~~~g~  471 (664)
                      +.|-.+|--.++.-...|+.+...++|+..+.. ++|-.  ..|...|        -.=....+.+.+.++|+..++. +
T Consensus       319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I  396 (677)
T KOG1915|consen  319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I  396 (677)
T ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence            567788888888888899999999999998865 34422  1121111        1123567899999999998873 3


Q ss_pred             CCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          472 EPDTITWNTLIDCH----FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVT  547 (664)
Q Consensus       472 ~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  547 (664)
                      +....|+.-+--+|    .++.++..|.+++...+.  ..|-..+|...|..=.+.+++|....++.+.++.+.. +..+
T Consensus       397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~  473 (677)
T KOG1915|consen  397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYA  473 (677)
T ss_pred             CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHH
Confidence            44455665554444    467889999999887765  4688899999999999999999999999999997654 7888


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012          548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDG-LKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV  626 (664)
Q Consensus       548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  626 (664)
                      |......=...|+.+.|..+|+           -..+.. +.--...|.+.|+-=...|.++.|..+++++++.  .+..
T Consensus       474 W~kyaElE~~LgdtdRaRaife-----------lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~  540 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIFE-----------LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV  540 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHH-----------HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence            8888888888999998888765           223221 1122357888888888999999999999999884  3344


Q ss_pred             HHHHHHHHHHH-----hcC-----------CHhHHHHHHHHH
Q 006012          627 VTYTTLMKALI-----RVD-----------KFHKVFSSYLFF  652 (664)
Q Consensus       627 ~~~~~l~~a~~-----~~g-----------~~~~A~~~~~~~  652 (664)
                      .+|.+...-=.     +.|           ....|..+|+.-
T Consensus       541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA  582 (677)
T KOG1915|consen  541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA  582 (677)
T ss_pred             hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence            45655544222     233           455677777743

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=3.3e-10  Score=110.27  Aligned_cols=467  Identities=14%  Similarity=0.110  Sum_probs=300.3

Q ss_pred             hhHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-----hCCCCCCH----H
Q 006012          127 PLWHSLLKNLCSS---NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-----SQRQRLTP----L  194 (664)
Q Consensus       127 ~~~~~~l~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-----~~~~~~~~----~  194 (664)
                      .+..++|..++..   .....+|+--++-+++...++..-.+--.+.+.+.+...+..|++.     .+.+..+.    .
T Consensus       198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik  277 (840)
T KOG2003|consen  198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK  277 (840)
T ss_pred             cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence            3455666555432   3345677777787877766555444444567788888889888876     33333332    3


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC------------
Q 006012          195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFI-NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKI------------  261 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~------------  261 (664)
                      ..+.+...+.+.|.++.|+..|+...+.  .|+.. .|+.++.+++-. +  ....++.|..|+....            
T Consensus       278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d--~ekmkeaf~kli~ip~~~dddkyi~~~d  352 (840)
T KOG2003|consen  278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-D--AEKMKEAFQKLIDIPGEIDDDKYIKEKD  352 (840)
T ss_pred             HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-c--HHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence            5666667789999999999999998876  47775 466666655533 2  2334667777765322            


Q ss_pred             CCCHHHHHHHH-----HHHHHcCC--HHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHHhc
Q 006012          262 ELDGQLLNDVI-----VGFAKAGD--ASKAMRFLGMAQGVGLSPKTAT---Y----------A--------AVITALSNS  313 (664)
Q Consensus       262 ~~d~~~~~~li-----~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~---~----------~--------~li~~~~~~  313 (664)
                      .||....|.-|     .-+-+.++  .++++-.--++..--+.|+-..   |          .        .-...+.++
T Consensus       353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~  432 (840)
T KOG2003|consen  353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN  432 (840)
T ss_pred             CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence            23444444333     22222222  2233222223322222333211   0          0        112246788


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK--MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARI  391 (664)
Q Consensus       314 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  391 (664)
                      |+++.|.+++.-+.+..-+.-...-|.|...+.-  ..++..|.+.-+...... .-+......-.......|++++|.+
T Consensus       433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~  511 (840)
T KOG2003|consen  433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE  511 (840)
T ss_pred             cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence            8999999988888775443333334444333332  336777777777665432 1233333333333445789999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 006012          392 VLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI  471 (664)
Q Consensus       392 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  471 (664)
                      .|++....+-.-....|+ +.-.+-..|+.++|++.|-++... +..+..+...+...|-...+..+|++++.+.... +
T Consensus       512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i  588 (840)
T KOG2003|consen  512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I  588 (840)
T ss_pred             HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence            999988654222222232 333566789999999999877543 1356777888888999999999999998777543 4


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTL  551 (664)
Q Consensus       472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  551 (664)
                      +.|.....-|...|-+.|+-.+|++.+-+--.. ++-+..+...|..-|....-++++..+|++..-  ++|+..-|-.+
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm  665 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM  665 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence            667888999999999999999999886554333 456788888888889999999999999998865  68999999888


Q ss_pred             HHHH-HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          552 VDIY-GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       552 i~~~-~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  618 (664)
                      +..| .+.|++.+|.+++           +...++ +.-|......|++.+...|. .++.++-+++.
T Consensus       666 iasc~rrsgnyqka~d~y-----------k~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle  720 (840)
T KOG2003|consen  666 IASCFRRSGNYQKAFDLY-----------KDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE  720 (840)
T ss_pred             HHHHHHhcccHHHHHHHH-----------HHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence            7654 5789998887774           333332 44577788888888877775 34555544443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.49  E-value=2.1e-13  Score=135.57  Aligned_cols=258  Identities=15%  Similarity=0.126  Sum_probs=101.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006012          375 LLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY  453 (664)
Q Consensus       375 ~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  453 (664)
                      .+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|.+.++++...+. -+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence            44666777788888888775544333 233444445555566667778888888888776542 245566666666 677


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRL  532 (664)
Q Consensus       454 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~  532 (664)
                      +++++|.+++....+.  .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888887766554  2456667778888888888888888888876542 345677788888888888999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFA  612 (664)
Q Consensus       533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  612 (664)
                      +++.++.... |..+...++..+...|+.+++.++++.....        .    ..|...|..+..+|...|+.++|+.
T Consensus       169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--------~----~~~~~~~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA--------A----PDDPDLWDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--------C----cCHHHHHHHHHHHhccccccccccc
Confidence            9988885322 5777888888888888888877765432221        1    2344567888889999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          613 VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       613 ~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      ++++..+. -+.|..+...+.+++.+.|+.++|.++++
T Consensus       236 ~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~  272 (280)
T PF13429_consen  236 YLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRR  272 (280)
T ss_dssp             HHHHHHHH-STT-HHHHHHHHHHHT-------------
T ss_pred             cccccccc-ccccccccccccccccccccccccccccc
Confidence            99998874 24478888889999999999999998876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=6.4e-10  Score=104.22  Aligned_cols=276  Identities=15%  Similarity=0.146  Sum_probs=214.5

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 006012          277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMGYLKD  353 (664)
Q Consensus       277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~  353 (664)
                      -.++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++.+.+.++.--+.   ......|..-|...|-+|.
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            3578999999999998743 34566778899999999999999999999987522211   2345567778899999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 006012          354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSF----IYSRILAGYRDRGEWQRTFQVLK  429 (664)
Q Consensus       354 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~  429 (664)
                      |+.+|..+.+.+. .-......|+..|-...+|++|+++-+++...+..+..+    .|.-+...+....+++.|..++.
T Consensus       126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999999988653 256677889999999999999999999998776554432    45566667777889999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012          430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC  509 (664)
Q Consensus       430 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  509 (664)
                      +..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+....  
T Consensus       205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--  281 (389)
T COG2956         205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--  281 (389)
T ss_pred             HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--
Confidence            988764 33444555677788999999999999999998865555667889999999999999999999999887533  


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG  559 (664)
Q Consensus       510 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  559 (664)
                      ...-..+.+.-....-.+.|...+.+-++.  +|+...+..+++.-..-+
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da  329 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA  329 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence            344445555545555556666666665554  699999999998765443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=1.8e-09  Score=106.65  Aligned_cols=413  Identities=13%  Similarity=0.017  Sum_probs=259.9

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          136 LCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEK  211 (664)
Q Consensus       136 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~  211 (664)
                      -|-..+.+++|...+.|+++..  |..+..|....-+|...|++.+..+.    .+..+.-+.+++.-.+++-..|++.+
T Consensus       124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e  201 (606)
T KOG0547|consen  124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE  201 (606)
T ss_pred             hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence            3446789999999999999874  66578889999999999999988776    23333345577777778888899888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          212 ALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDK--IELDGQLLNDVIVGFAKAGDASKAMRFLG  289 (664)
Q Consensus       212 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~~~~  289 (664)
                      |+.-..-..-.|-.-|..+-..+=+.+-+.+.      ...-+.+.+++  +-|.....++....|-..=          
T Consensus       202 al~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~------~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~----------  265 (606)
T KOG0547|consen  202 ALFDVTVLCILEGFQNASIEPMAERVLKKQAM------KKAKEKLKENRPPVLPSATFIASYFGSFHADP----------  265 (606)
T ss_pred             HHHhhhHHHHhhhcccchhHHHHHHHHHHHHH------HHHHHhhcccCCCCCCcHHHHHHHHhhccccc----------
Confidence            87654443322212222222222222222211      11112222222  3355544444443332110          


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHh--c---CChHHHHHHHHHHHH---cCCC---CC------HHHHHHHHHHHHhcCCHH
Q 006012          290 MAQGVGLSPKTATYAAVITALSN--S---GRTIEAEAVFEELKE---SGLK---PR------TKAYNALLKGYVKMGYLK  352 (664)
Q Consensus       290 ~~~~~g~~~~~~~~~~li~~~~~--~---g~~~~A~~l~~~m~~---~~~~---p~------~~~~~~li~~~~~~g~~~  352 (664)
                        ......+...+...+..++..  .   ..+..|.+.+.+-..   ....   .|      ..+.+.-...+.-.|+..
T Consensus       266 --~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~  343 (606)
T KOG0547|consen  266 --KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL  343 (606)
T ss_pred             --cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence              000000000111111111110  0   112233333322111   0000   01      122222223344568889


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  432 (664)
                      .|..-|+..+.....++ ..|--+...|....+.++.++.|......+ +-|+.+|..-...+.-.+++++|..=|++.+
T Consensus       344 ~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai  421 (606)
T KOG0547|consen  344 GAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAI  421 (606)
T ss_pred             hhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988755433 337777888999999999999999998776 4566777777888888899999999999988


Q ss_pred             HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CC
Q 006012          433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-----YF  507 (664)
Q Consensus       433 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~  507 (664)
                      ... +.+...|.-+.-+..+.+.+++++..|++.++. ++.....|+.....+...+++++|.+.|+..++..     +.
T Consensus       422 ~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~  499 (606)
T KOG0547|consen  422 SLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII  499 (606)
T ss_pred             hcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence            764 445667777777778889999999999999876 35567889999999999999999999999887642     11


Q ss_pred             CCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 006012          508 PCTTTYN-IMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD  573 (664)
Q Consensus       508 p~~~t~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  573 (664)
                      .+..++. --+-.+--.+++..|.+++++.++.+.+ ....|-.|...-.+.|++++|+++|+....
T Consensus       500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  500 VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2222221 1111222458999999999999986544 456788999999999999999999875444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=4.7e-09  Score=101.65  Aligned_cols=283  Identities=14%  Similarity=0.124  Sum_probs=230.0

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF  356 (664)
Q Consensus       277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  356 (664)
                      ..|++.+|.+...+..+.+ +.....|..-..+--+.|+.+.+-+.+.+..+..-.++...+-+........|+...|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            3599999999999887766 334566777778888999999999999999886455677778888888999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-------FIYSRILAGYRDRGEWQRTFQVLK  429 (664)
Q Consensus       357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~  429 (664)
                      -++++.+.+.. +.........+|.+.|++.+...++..|.+.+.-.+.       .+|..++.-....+..+.-...++
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            99999988755 7788899999999999999999999999998876554       367777777777777776666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012          430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC  509 (664)
Q Consensus       430 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  509 (664)
                      ..-.. .+.++..-.+++.-+.++|+.++|.++..+..+++..+..    ...-.+.+-++.+.-++..+.-.+.. +.+
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~  327 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED  327 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence            65433 2456677778889999999999999999999988766552    12224556777777777777766553 455


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       510 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      +..+.+|...|.+.+.|.+|.+.|+...+  ..|+..+|+-+.+++.+.|+..+|.++.+
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence            68899999999999999999999998877  47899999999999999999999988754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=3.3e-09  Score=102.70  Aligned_cols=287  Identities=16%  Similarity=0.122  Sum_probs=220.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012          313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV  392 (664)
Q Consensus       313 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l  392 (664)
                      .|++..|+++..+-.+.+-.| ...|..-..+--..|+.+.+..++.+.-+..-.++...+-+........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            689999999999877766543 4566666777788899999999999998864456777788888889999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHH
Q 006012          393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT-------HFYNVMIDTFGKYNCLHHAMAAFDR  465 (664)
Q Consensus       393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~  465 (664)
                      ++++.+.+ +.+.........+|.+.|++.....+...|.+.|.-.+.       .+|..+++-....+..+.-...|+.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            99988775 557778888999999999999999999999998865543       4667777766666666666667766


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012          466 MLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV  545 (664)
Q Consensus       466 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~  545 (664)
                      ...+ .+.+...-.+++.-+.++|+.++|.++.++..+++..|.    ....-.+.+.++.+.-.+..++-.+.. .-++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence            6533 234555666778888899999999999999988876665    222234566777777777777666652 2255


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          546 VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       546 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                      ..+.+|...|.+.+.+.+|.+.|+           ...+  ..|+..+|+-+.+++.+.|+..+|.+..++....
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~le-----------aAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALE-----------AALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHH-----------HHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            788888888888888888877754           2222  4688888888888888889888888888877643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=1.7e-10  Score=118.38  Aligned_cols=277  Identities=12%  Similarity=0.107  Sum_probs=213.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPRTKAYNALLKGYVKMGYLKDAEFV  357 (664)
Q Consensus       280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~  357 (664)
                      +..+|+..|..+... +.-.......+..+|...+++++|.++|+.+.+...  .-+..+|.+.+-.+-+.-.+.   -+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YL  409 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HH
Confidence            567888999885543 233446677788999999999999999999987421  126677887776554322111   12


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012          358 VSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVE  437 (664)
Q Consensus       358 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~  437 (664)
                      -+.+.+.. +-.+.+|-++..+|.-+++.+.|++.|++..+.+ +...++|+.+..-+....++|.|...|+..+... +
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence            22333322 2367899999999999999999999999998764 3377889999999999999999999999887542 2


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI  517 (664)
Q Consensus       438 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll  517 (664)
                      .+-..|..+...|.|.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.|+|+++++++...+ +-|+..-.-..
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence            233455567778999999999999999999876 4567777888889999999999999999998877 44555555566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 006012          518 NLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       518 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      ..+...+++++|++.++++++.  .| +..++..++..|-+.|+.+.|+.-
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~  613 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLH  613 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHh
Confidence            7778889999999999999985  45 467788888999999999888765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=3.2e-09  Score=99.62  Aligned_cols=286  Identities=17%  Similarity=0.171  Sum_probs=180.6

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCH
Q 006012          313 SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD------EHTYSLLIDAYANAGRW  386 (664)
Q Consensus       313 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~  386 (664)
                      ..+.++|.++|-+|.+... -+..+--+|.+.|-+.|..|.|+++++.+.++   ||      ......|..-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            5778889999999887432 24455667888888889999999999888875   34      23344566677788888


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHH
Q 006012          387 ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT----HFYNVMIDTFGKYNCLHHAMAA  462 (664)
Q Consensus       387 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~  462 (664)
                      |.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+..    ..|.-+...+....+.+.|...
T Consensus       124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            88888888887644 344556777788888888888888888877776544332    3445555555566677777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012          463 FDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL  542 (664)
Q Consensus       463 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  542 (664)
                      +.+..+.. +..+..--.+.+.+...|++++|.+.++...+.+..--..+...|..+|.+.|+.++...++..+.+... 
T Consensus       203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-  280 (389)
T COG2956         203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-  280 (389)
T ss_pred             HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence            77776654 2233334445566677777777777777777766433445566677777777777777777777766532 


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 006012          543 PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE---DQRDAEAFAVLQYMKE  619 (664)
Q Consensus       543 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~  619 (664)
                       ....-..+.+......-.+.|...+          .+++.+   +|+...+..++..-..   .|+..+-...++.|+.
T Consensus       281 -g~~~~l~l~~lie~~~G~~~Aq~~l----------~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         281 -GADAELMLADLIELQEGIDAAQAYL----------TRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             -CccHHHHHHHHHHHhhChHHHHHHH----------HHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence             2222333333333333333333322          223332   5777766666665532   3445555555666654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=1.9e-10  Score=117.99  Aligned_cols=280  Identities=15%  Similarity=0.111  Sum_probs=183.1

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006012          315 RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV--LPDEHTYSLLIDAYANAGRWESARIV  392 (664)
Q Consensus       315 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l  392 (664)
                      +..+|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+...  .-+...|.+.+..+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            356788888885544 332446667788888888899999999988876531  1256677776655432    122222


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 006012          393 LKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE  472 (664)
Q Consensus       393 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  472 (664)
                      +.+-.-.--+..+.+|.++..+|.-.++.+.|++.|+...+.+ +....+|+.+..-+.....+|.|...|+..+.    
T Consensus       409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----  483 (638)
T KOG1126|consen  409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG----  483 (638)
T ss_pred             HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence            2222111224566788888888888888888888888777653 23567777777777777778888888877764    


Q ss_pred             CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          473 PDTITWN---TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYT  549 (664)
Q Consensus       473 ~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  549 (664)
                      .|...||   .|...|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|+++++++...+.+ |+-.--
T Consensus       484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~  561 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY  561 (638)
T ss_pred             CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence            3444444   45556777888888888888777766 555666666777777778888888888877776544 443334


Q ss_pred             HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      .-+..+...+++++|+..++.           +..  +.|+.. .|-.++..|.+.|+.+.|+.-|..|.+
T Consensus       562 ~~~~il~~~~~~~eal~~LEe-----------Lk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEE-----------LKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHH-----------HHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            445556666777776666442           222  345543 566667777777777777777777766

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=3.7e-09  Score=104.44  Aligned_cols=221  Identities=15%  Similarity=0.194  Sum_probs=168.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012          379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH  458 (664)
Q Consensus       379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  458 (664)
                      .+.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++.++.|.+..+.+ +-+..+|..-..++.-.+++++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence            344578888999999999887644433 37778888999999999999999998876 5567788888888888889999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      |..=|++.+... +-++..|-.+.-+.-+.+++++++..|++..++ ++..+..|+.....+...+++++|.+.++..++
T Consensus       413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            999999998764 335667777777777889999999999999887 466788999999999999999999999999987


Q ss_pred             CCCCCC-------H--HHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 006012          539 QGLLPN-------V--VTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDA  608 (664)
Q Consensus       539 ~~~~p~-------~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  608 (664)
                      .  +|+       .  .+--+++..-            |.+.+++|+.++.+..+  +.|. ...|..|...-.+.|+.+
T Consensus       491 L--E~~~~~~~v~~~plV~Ka~l~~q------------wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~  554 (606)
T KOG0547|consen  491 L--EPREHLIIVNAAPLVHKALLVLQ------------WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKID  554 (606)
T ss_pred             h--ccccccccccchhhhhhhHhhhc------------hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHH
Confidence            5  333       1  1111111111            12334445555555554  3444 347889999999999999


Q ss_pred             HHHHHHHHHHH
Q 006012          609 EAFAVLQYMKE  619 (664)
Q Consensus       609 ~A~~~~~~m~~  619 (664)
                      +|+++|++...
T Consensus       555 eAielFEksa~  565 (606)
T KOG0547|consen  555 EAIELFEKSAQ  565 (606)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.33  E-value=5.5e-09  Score=110.13  Aligned_cols=82  Identities=21%  Similarity=0.196  Sum_probs=41.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          368 PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI  447 (664)
Q Consensus       368 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  447 (664)
                      |+..+|.++++.-.-+|+.+.|..++.+|.+.|.+.+.+-|..++-+   .++...+..+++-|...|+.|+..|+.-.+
T Consensus       202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv  278 (1088)
T KOG4318|consen  202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV  278 (1088)
T ss_pred             CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence            45555555555555555555555555555555555555444444433   444444445555555555555555554444


Q ss_pred             HHHhc
Q 006012          448 DTFGK  452 (664)
Q Consensus       448 ~~~~~  452 (664)
                      ..+.+
T Consensus       279 ip~l~  283 (1088)
T KOG4318|consen  279 IPQLS  283 (1088)
T ss_pred             Hhhhc
Confidence            44433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.30  E-value=4.2e-07  Score=93.40  Aligned_cols=464  Identities=13%  Similarity=0.089  Sum_probs=283.4

Q ss_pred             hHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHH
Q 006012          128 LWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISAC  203 (664)
Q Consensus       128 ~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~  203 (664)
                      ++...++.  ...+.+..++.+.+.+++..  +.+..+.....-.+...|+-++|...    ......+.++|..+.-.+
T Consensus        10 lF~~~lk~--yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~   85 (700)
T KOG1156|consen   10 LFRRALKC--YETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHH--HHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            34445543  35567788888888888743  55566777777778888999999876    556677789999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          204 ARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASK  283 (664)
Q Consensus       204 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~  283 (664)
                      ....++++|+..|......+ +-|...|.-+--.-.+.++++...  ..-....+. .+.....|-.+..++.-.|+...
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~--~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL--ETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998864 334445543332233444432211  111111111 13345678888888888999999


Q ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 006012          284 AMRFLGMAQGVG-LSPKTATYAAVI------TALSNSGRTIEAEAVFEELKESGLKPRTKAY-NALLKGYVKMGYLKDAE  355 (664)
Q Consensus       284 A~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~  355 (664)
                      |..+.+...+.. -.|+...|....      ....+.|..++|.+.+..-... + .|...+ -+-...+.+.+++++|.
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~  239 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAV  239 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHH
Confidence            999998887654 245655554433      4556778888888877665432 1 133332 34556788899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          356 FVVSEMERSGVLPDEHTYSLL-IDAYANAGRWESAR-IVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                      .++..++..+  ||..-|... ..++.+..+.-++. .+|....+.- +........=+.......-.+..-.++..+.+
T Consensus       240 ~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~  316 (700)
T KOG1156|consen  240 KVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLS  316 (700)
T ss_pred             HHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence            9999999874  566665554 44444344444444 6666665431 11111111111111122223344556677777


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CC----------CCCCHHHHH--HHHHHHHHcCCHHHHHHH
Q 006012          434 SGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS----EG----------IEPDTITWN--TLIDCHFKCGRYDRAEEL  497 (664)
Q Consensus       434 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g----------~~~~~~~~~--~li~~~~~~g~~~~A~~~  497 (664)
                      .|+++-   +..+...|-.-...+-.+++.-.+..    .|          -+|+...|.  .++..|-+.|+++.|..+
T Consensus       317 Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y  393 (700)
T KOG1156|consen  317 KGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY  393 (700)
T ss_pred             cCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            886653   33333333222211111111111111    11          145655554  467788899999999999


Q ss_pred             HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH---
Q 006012          498 FEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD---  573 (664)
Q Consensus       498 ~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---  573 (664)
                      ++..+.+  .|+. ..|..-.+.+...|..++|..++.+..+.+ .+|...-.--..-..+..++++|.++......   
T Consensus       394 Id~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  394 IDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            9999887  3543 445566688899999999999999998875 34655554566667788889998887542221   


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006012          574 QAVNAFRVMRTDGLKPSNLALNSL--INAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       574 ~a~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~  618 (664)
                      .|+..+..|+-        +|-.+  ..+|.+.|++..|++=|....
T Consensus       471 ~~~~~L~~mqc--------mWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  471 GAVNNLAEMQC--------MWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             chhhhHHHhhh--------HHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            22222333331        33322  466777777777776555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=6.6e-08  Score=97.63  Aligned_cols=476  Identities=11%  Similarity=0.007  Sum_probs=294.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL---SQRQRLTPLTYNALISACARNDDLEKALNLMS  217 (664)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  217 (664)
                      ..++.|.-+-+.+...+.-|.   -.--+..+|.-.|.+..|..+   ......|..+......++.+..++++|+.++.
T Consensus        30 ~~y~~a~f~adkV~~l~~dp~---d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~  106 (611)
T KOG1173|consen   30 HRYKTALFWADKVAGLTNDPA---DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG  106 (611)
T ss_pred             HhhhHHHHHHHHHHhccCChH---HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455566666666655442222   233456666666777776655   44456678888889999999999999999987


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006012          218 KMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLS  297 (664)
Q Consensus       218 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~  297 (664)
                      +-..   .-+.+.|-..-.    .+..+...+.    ++  .++......+-.-...|....+.++|.+.|.+....   
T Consensus       107 ~~~~---~~~~f~yy~~~~----~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~---  170 (611)
T KOG1173|consen  107 RGHV---ETNPFSYYEKDA----ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARDKYKEALLA---  170 (611)
T ss_pred             ccch---hhcchhhcchhh----hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc---
Confidence            4311   112222111000    0000000000    00  001111111111123455566778888888777643   


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGL----KPRTKAYNALLKGY-VKMGYLKDAEFVVSEMERSGVLPDEHT  372 (664)
Q Consensus       298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~~~~~~  372 (664)
                       |...+..+...-...  .-.+.+.++.+.....    +-+......+.... ++..+ +.....-.+-.-.+..-+...
T Consensus       171 -D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dl  246 (611)
T KOG1173|consen  171 -DAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDL  246 (611)
T ss_pred             -chhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHH
Confidence             444333332221111  1111122222221110    11122222222211 11100 001000010111123345666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012          373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK  452 (664)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  452 (664)
                      .....+-+-..+++.+..++.+...+.. +++...+..-|.++...|+..+-+.+=..|.+.- +....+|-++.-.|.-
T Consensus       247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~  324 (611)
T KOG1173|consen  247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM  324 (611)
T ss_pred             HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence            6667777888899999999999998765 5666677777789999999888887777787763 5567889999988888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL  532 (664)
Q Consensus       453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~  532 (664)
                      .|...+|.+.|.+..... +.=...|-.....|+-.|..|+|+..+....+-= +-....+.-+.--|.+.++.+.|.++
T Consensus       325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~F  402 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKF  402 (611)
T ss_pred             hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHH
Confidence            899999999999876543 1224578889999999999999999988876541 11122233344567889999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFA  612 (664)
Q Consensus       533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  612 (664)
                      |.+..... +-|+.+.+-+.-...+.+.+.+|..+|+.....    .+....... --..+++.|.++|.+.+++++|+.
T Consensus       403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~----ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV----IKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH----hhhcccccc-chhHHHHhHHHHHHHHhhHHHHHH
Confidence            99988753 337888898888888899999999988744321    222111111 123478899999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          613 VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       613 ~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      .+++.+.. .+-|..++.+++-.|...|+++.|...|.
T Consensus       477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence            99999984 35588999999999999999999999887

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.29  E-value=3.9e-07  Score=93.62  Aligned_cols=434  Identities=13%  Similarity=0.096  Sum_probs=280.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012          193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI  272 (664)
Q Consensus       193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li  272 (664)
                      ..-|..++..| ..+++.+.+.+.+.+.+ +++-...|....--.++..|+-+++.  .....-.+ +-..+.+.|..+.
T Consensus         8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~--~~vr~glr-~d~~S~vCwHv~g   82 (700)
T KOG1156|consen    8 NALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAY--ELVRLGLR-NDLKSHVCWHVLG   82 (700)
T ss_pred             HHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHH--HHHHHHhc-cCcccchhHHHHH
Confidence            34555566654 66888999998888877 33444445544444556666654432  33332222 2244667888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK  352 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  352 (664)
                      -.+-...++++|+..|..+...+ +.|...|.-+--.-.+.|+++.....-..+.+... .....|..+..++--.|+..
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~  160 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYK  160 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999998865 45677777777777788888888777777766422 24567888888888899999


Q ss_pred             HHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          353 DAEFVVSEMERSG-VLPDEHTYSLLI------DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF  425 (664)
Q Consensus       353 ~a~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  425 (664)
                      .|..++++..+.. -.|+...+....      ....+.|..++|.+.+......- .-....-..-...+.+.++.++|.
T Consensus       161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~  239 (700)
T KOG1156|consen  161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAV  239 (700)
T ss_pred             HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHH
Confidence            9999999988754 245655554332      33456788888887776654321 111222234456778899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHH-HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012          426 QVLKEMKSSGVEPDTHFYNVMID-TFGKYNCLHHAM-AAFDRMLSEG---IEPDTITWNTLIDCHFKCGRYDRAEELFEE  500 (664)
Q Consensus       426 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  500 (664)
                      .++..+...  .||...|.-.+. ++.+-.+.-++. .+|....+.-   -.|-....+    ......-.+..-+++..
T Consensus       240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~~  313 (700)
T KOG1156|consen  240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLRP  313 (700)
T ss_pred             HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHHH
Confidence            999999887  467666655444 444333333344 6666655431   111111111    11112234455567777


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC------------CCCHH--HHHHHHHHHHhcCChHHH
Q 006012          501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GL------------LPNVV--TYTTLVDIYGQSGRFDDA  564 (664)
Q Consensus       501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~------------~p~~~--~~~~li~~~~~~g~~~~A  564 (664)
                      +..+|+++   ++..+...|-.....+-..++.-.+...  |-            .|...  ++-.++..|-+.|+++.|
T Consensus       314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A  390 (700)
T KOG1156|consen  314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA  390 (700)
T ss_pred             HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence            88888655   4444444444433333233333333221  11            34443  444567788899999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 006012          565 IECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFH  643 (664)
Q Consensus       565 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~  643 (664)
                      ..++++.++             ..|+.+ .|..-.+.+.+.|..++|..++++..+.+ .+|..+-..-+.-..+.++.+
T Consensus       391 ~~yId~AId-------------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~  456 (700)
T KOG1156|consen  391 LEYIDLAID-------------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE  456 (700)
T ss_pred             HHHHHHHhc-------------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence            888664332             456654 56666788999999999999999999865 567666667888889999999


Q ss_pred             HHHHHHHHHHHhhh
Q 006012          644 KVFSSYLFFNIYKM  657 (664)
Q Consensus       644 ~A~~~~~~~~~~~~  657 (664)
                      +|.++..+|...+.
T Consensus       457 eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  457 EAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHHhhhccc
Confidence            99999998887663

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.28  E-value=6.6e-09  Score=109.53  Aligned_cols=374  Identities=14%  Similarity=0.164  Sum_probs=225.3

Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG  293 (664)
Q Consensus       214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~  293 (664)
                      +++-.|...|+.|+.+||..++..||..|+.+.+   .+|..|.-+..+.+...++.++.+....|+.+.+.        
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaa---tif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAA---TIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccc---cchhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence            4566777888888888888888888888887543   27777877777788888888888888888877664        


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHH
Q 006012          294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME-RSGVLPDEHT  372 (664)
Q Consensus       294 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~  372 (664)
                         .|...||..|..+|.+.|++.. ++..++           ..-.++..+...|.-..-..++..+. ..+.-||..+
T Consensus        80 ---ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n  144 (1088)
T KOG4318|consen   80 ---EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN  144 (1088)
T ss_pred             ---CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence               5778888888888888888766 222222           11223444455555444444444432 1223344432


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          373 YSLLIDAYANAGRWESARIVLKEMEVSH-AKPNSFIYSRILAGYRDRG-EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF  450 (664)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  450 (664)
                         .+......|-++.+++++..+.... ..|..+    .++-+.... .+++-..+.+...+   .|+..+|..+++.-
T Consensus       145 ---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a  214 (1088)
T KOG4318|consen  145 ---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA  214 (1088)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence               3444566677777777776653221 111111    233333222 23333333333332   58999999999999


Q ss_pred             hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK  530 (664)
Q Consensus       451 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~  530 (664)
                      ...|+++.|..++.+|.+.|++.+..-|-.|+-+   .+...-+..+++.|.+.|+.|+..|+...+-.+...|....+.
T Consensus       215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~  291 (1088)
T KOG4318|consen  215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE  291 (1088)
T ss_pred             HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc
Confidence            9999999999999999999998888877777765   7888888899999999999999999998888877755532221


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhh-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          531 RLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL-SDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAE  609 (664)
Q Consensus       531 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  609 (664)
                              .|.+ ....+.+-+..-.-.|  ..|.+.++.. ..-.+..+++..-.|+.-....|. +..-....|+-++
T Consensus       292 --------e~sq-~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~  359 (1088)
T KOG4318|consen  292 --------EGSQ-LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEE  359 (1088)
T ss_pred             --------cccc-hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCch
Confidence                    2222 2222222222222223  2333333211 111122222222234443444443 3333444677777


Q ss_pred             HHHHHHHHHHC--CCCC-CHHHHHHHHHHHHh
Q 006012          610 AFAVLQYMKEN--GLKP-DVVTYTTLMKALIR  638 (664)
Q Consensus       610 A~~~~~~m~~~--g~~p-~~~~~~~l~~a~~~  638 (664)
                      .+++...|..-  .+.+ +...|..++.-|.+
T Consensus       360 veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr  391 (1088)
T KOG4318|consen  360 VEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR  391 (1088)
T ss_pred             HHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence            77777776531  1222 33445555554444

>PRK12370 invasion protein regulator; Provisional

Probab=99.25  E-value=5.6e-09  Score=113.67  Aligned_cols=217  Identities=12%  Similarity=0.014  Sum_probs=129.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSN---------SGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      ++++|++.|++..+.. +.+...|..+..++..         .+++++|...+++..+.+.. +...+..+...+...|+
T Consensus       276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence            4567777777777653 2234455555444332         23467777777777765432 56666667677777777


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE  430 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  430 (664)
                      +++|...+++..+.+.. +...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus       354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            77777777777766432 4556666777777777777777777777665422 222223334445556777777777777


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012          431 MKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE  503 (664)
Q Consensus       431 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  503 (664)
                      +.....+.+...+..+...+...|+.++|...+.++.... +.+....+.+...|+..|  ++|...++.+.+
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            6554312234445556666667777777777776665431 122334444555555555  466666666544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.23  E-value=1.2e-08  Score=98.34  Aligned_cols=199  Identities=13%  Similarity=0.056  Sum_probs=115.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      ....+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence            35566667777778888888888887776543 33456667777777777777777777777766532 24456666667


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ  422 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~  422 (664)
                      .+...|++++|.+.+++..+.... .....+..+...+...|++++|...+++..... +.+...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence            777777777777777776653211 123344555555666666666666666655432 223344445555555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM  466 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  466 (664)
                      +|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            555555554443 1223333334444444444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.23  E-value=2.5e-11  Score=84.79  Aligned_cols=50  Identities=32%  Similarity=0.567  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 006012          191 LTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTR  240 (664)
Q Consensus       191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  240 (664)
                      ||..+||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=99.22  E-value=1e-08  Score=111.73  Aligned_cols=250  Identities=12%  Similarity=0.031  Sum_probs=157.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012          350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN---------AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE  420 (664)
Q Consensus       350 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~  420 (664)
                      ++++|...|++..+.... +...|..+..+|..         .+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus       276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence            356777777777765322 34455555444332         234678888888877664 3466677777777778888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012          421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE  500 (664)
Q Consensus       421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  500 (664)
                      +++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+++
T Consensus       354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            888888888877764 445667777777888888888888888888776422 222333344456667888888888888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHH
Q 006012          501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAF  579 (664)
Q Consensus       501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~  579 (664)
                      +.+...+-+...+..+..++...|+.++|...+.++...  .|+ ....+.+...|...|  ++|...++.+.+      
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~------  501 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE------  501 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH------
Confidence            776542224445666777778888888888888877654  233 344455556667776  355555443221      


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          580 RVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       580 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                       ...   ..+....+..++.++  .|+.+.+..+ +++.+.
T Consensus       502 -~~~---~~~~~~~~~~~~~~~--~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        502 -SEQ---RIDNNPGLLPLVLVA--HGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             -Hhh---HhhcCchHHHHHHHH--HhhhHHHHHH-HHhhcc
Confidence             111   123333444444444  6777777666 777664

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.22  E-value=1.2e-08  Score=105.86  Aligned_cols=247  Identities=19%  Similarity=0.226  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHC-----CC--
Q 006012          406 FIYSRILAGYRDRGEWQRTFQVLKEMKSS-----G-VEPDTHF-YNVMIDTFGKYNCLHHAMAAFDRMLSE-----GI--  471 (664)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~--  471 (664)
                      .+...+...|...|+++.|..+++...+.     | ..|...+ .+.+...|...+++++|..+|+++...     |-  
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34444566666666666666666554432     1 1233322 234666778888888888888887642     21  


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 006012          472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER-----G-YFPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQ---GL  541 (664)
Q Consensus       472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~  541 (664)
                      +.-..+++.|..+|.+.|++++|..++++..+-     + ..|.+ ..++.+...|+..+++++|..++.+..+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            112456777778899999999888888776431     1 12222 23556677788899999999998877642   12


Q ss_pred             CCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          542 LPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM  617 (664)
Q Consensus       542 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  617 (664)
                      .++    ..+++.|...|.+.|++++|.++++.    |+...++.......-....++.|...|.+.+++.+|.++|.+.
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~----ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKK----AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHH----HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            222    46889999999999999999998764    3333333332212222457889999999999999999998876


Q ss_pred             HH----CCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHhh
Q 006012          618 KE----NGL-KPD-VVTYTTLMKALIRVDKFHKVFSSYLFFNIYK  656 (664)
Q Consensus       618 ~~----~g~-~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~  656 (664)
                      ..    .|. .|+ ..+|..|..+|.+.|++++|+++-+..-.++
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~  480 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR  480 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            53    232 223 4789999999999999999999998654443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=1.5e-08  Score=97.59  Aligned_cols=198  Identities=12%  Similarity=0.018  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDA  379 (664)
Q Consensus       300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  379 (664)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            4556667777777777777777777776543 224566666777777777777777777777665432 44556666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012          380 YANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH  458 (664)
Q Consensus       380 ~~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  458 (664)
                      +...|++++|.+.+++...... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            7777777777777776654321 1122334444455555555555555555544432 1223344444444444444444


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      |...+++..+.. +.+...+..+...+...|+.++|..+++.+
T Consensus       188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            444444444331 223333333444444444444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.20  E-value=5.6e-11  Score=83.01  Aligned_cols=50  Identities=48%  Similarity=0.769  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE  522 (664)
Q Consensus       473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~  522 (664)
                      ||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56666666666666666666666666666666666666666666666653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=5.9e-07  Score=85.49  Aligned_cols=438  Identities=12%  Similarity=0.042  Sum_probs=229.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN  214 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~  214 (664)
                      +..++..|..+.+.....+. .....+.-=+...+.+.|++++|...    .....++...|-.|.-++.-.|.+.+|..
T Consensus        34 s~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             hcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            45688889998888764431 11112333456788889999999876    44455666778888888888899999988


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012          215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV  294 (664)
Q Consensus       215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  294 (664)
                      +-.+..+     ++..-..++...-+.++-  .....+++.+..     ...---+|.......-.+.+|++++..+...
T Consensus       113 ~~~ka~k-----~pL~~RLlfhlahklndE--k~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785|consen  113 IAEKAPK-----TPLCIRLLFHLAHKLNDE--KRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHhhCCC-----ChHHHHHHHHHHHHhCcH--HHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8655422     223333444444444543  222233333332     1233345555555666789999999998865


Q ss_pred             CCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          295 GLSPKTATYAAVIT-ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY  373 (664)
Q Consensus       295 g~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  373 (664)
                        .|.-...|..+. +|.+..-++-+.+++.-..+. ++.+...-|.......+.=.-..|+.-.+.+.+.+-..    |
T Consensus       181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~  253 (557)
T KOG3785|consen  181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y  253 (557)
T ss_pred             --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence              366666665554 556777777777887776654 33234444544444433322233333344444332110    1


Q ss_pred             HHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HH
Q 006012          374 SLLIDAYANA-----GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH-----FY  443 (664)
Q Consensus       374 ~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~  443 (664)
                       -.+.-+++.     ..-+.|++++--+...    -+.....++--|.+.+++.+|..+.+++.-.  .|-..     ++
T Consensus       254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~  326 (557)
T KOG3785|consen  254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF  326 (557)
T ss_pred             -hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH
Confidence             112222222     2335555555444321    1122333444566667777777666654311  11111     11


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          444 NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT-WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE  522 (664)
Q Consensus       444 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~  522 (664)
                      .++..-......+.-|.+.|+..-+.+...|... -..+..++.-..++++.+-+++.+..--...|...| .+..+.+.
T Consensus       327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a  405 (557)
T KOG3785|consen  327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA  405 (557)
T ss_pred             HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence            1111112222334556666655555444333322 234444555556667776666666554322333333 35566667


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHH-HHHHHHH
Q 006012          523 QERWEDVKRLLGNMRAQGLLPNVVTYT-TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLA-LNSLINA  600 (664)
Q Consensus       523 ~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~  600 (664)
                      .|++.+|+++|-.+....++ |..+|. .|.++|.+++.++.|.++              |.+..-..+..+ ...+.+-
T Consensus       406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~--------------~lk~~t~~e~fsLLqlIAn~  470 (557)
T KOG3785|consen  406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM--------------MLKTNTPSERFSLLQLIAND  470 (557)
T ss_pred             hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH--------------HHhcCCchhHHHHHHHHHHH
Confidence            77777777777666544444 334443 344666777777666544              222221112222 2333455


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 006012          601 FGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       601 ~~~~g~~~~A~~~~~~m~~  619 (664)
                      |.+.+.+--|-+.|+++..
T Consensus       471 CYk~~eFyyaaKAFd~lE~  489 (557)
T KOG3785|consen  471 CYKANEFYYAAKAFDELEI  489 (557)
T ss_pred             HHHHHHHHHHHHhhhHHHc
Confidence            5666666555555555544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.17  E-value=1.3e-05  Score=82.58  Aligned_cols=394  Identities=11%  Similarity=0.113  Sum_probs=192.2

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS  217 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  217 (664)
                      .++.+......|..++..=....+..+|...+......+-.+-+..+ .+-...++..-+--|..++..+++++|-+.+.
T Consensus       114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la  193 (835)
T KOG2047|consen  114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA  193 (835)
T ss_pred             hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34555555555555554321122234555555555555655555554 22223445556777788888888888888887


Q ss_pred             HHHHcC------CCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012          218 KMRQDG------YHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGM  290 (664)
Q Consensus       218 ~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~  290 (664)
                      ......      .+.+...|..+....++.-+....+ ...++..+...-..--...|++|.+.|.+.|.+++|.++|++
T Consensus       194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee  273 (835)
T KOG2047|consen  194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE  273 (835)
T ss_pred             HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            776432      1334445665555555443221110 122333332221112246899999999999999999999988


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHHHcCC-----------CCCHHH
Q 006012          291 AQGVGLSPKTATYAAVITALSNS----------------G------RTIEAEAVFEELKESGL-----------KPRTKA  337 (664)
Q Consensus       291 ~~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~~l~~~m~~~~~-----------~p~~~~  337 (664)
                      ....-  ..+.-|..+.++|.+-                +      +++-...-|+.+.....           +-++..
T Consensus       274 ai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e  351 (835)
T KOG2047|consen  274 AIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE  351 (835)
T ss_pred             HHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence            76531  2222233333333221                1      12223333443332210           012222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHH
Q 006012          338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLP------DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN---SFIY  408 (664)
Q Consensus       338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~---~~~~  408 (664)
                      |..-+.  +..|+..+-...+.+..+. +.|      -...|..+.+.|-..|+++.|..+|++..+...+.-   ..+|
T Consensus       352 W~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw  428 (835)
T KOG2047|consen  352 WHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW  428 (835)
T ss_pred             HHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence            222211  2234555556666665543 111      124566666677777777777777776655432211   2345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CC------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSG-----------VE------PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI  471 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g-----------~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  471 (664)
                      ..-...=.++.+++.|+.+.+.....-           .+      .+...|...++.--..|-++....+++++++..+
T Consensus       429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri  508 (835)
T KOG2047|consen  429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI  508 (835)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence            555555566666666666665543210           00      1223444555555556666666666666665443


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 006012          472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGE---QERWEDVKRLLGNMRA  538 (664)
Q Consensus       472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~---~g~~~~a~~~~~~m~~  538 (664)
                      ......-|- ...+-.+.-++++++++++-+..=-.|++ ..|+..+.-+.+   ....+.|..+|++..+
T Consensus       509 aTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~  578 (835)
T KOG2047|consen  509 ATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD  578 (835)
T ss_pred             CCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence            221111111 11122333455555555544333212222 233333333221   2234555555555555

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=3.8e-06  Score=85.60  Aligned_cols=444  Identities=16%  Similarity=0.111  Sum_probs=240.5

Q ss_pred             HHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHH--h
Q 006012          169 LIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSL--VIQSLT--R  240 (664)
Q Consensus       169 li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~--~  240 (664)
                      =++.+.+.|++++|...    ....+.+...+..=+-+.++.++|++|+.+.+.-..      ..+++.  +=++||  +
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence            35677788888888766    444566677777777788888888888866544221      111111  234444  3


Q ss_pred             cCCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHH
Q 006012          241 TNKIDSSLLQKLYKEIECDKIE-LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP-KTATYAAVITALSNSGRTIE  318 (664)
Q Consensus       241 ~g~~~~~~~~~l~~~~~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~  318 (664)
                      .+..|+++  ..++     +.. .|..+...-...+.+.|++++|+++|+.+.+.+.+- +..--..++.+-.       
T Consensus        92 lnk~Deal--k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------  157 (652)
T KOG2376|consen   92 LNKLDEAL--KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------  157 (652)
T ss_pred             cccHHHHH--HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence            44443332  3333     222 233355555666777788888888887776654221 1111111111100       


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHH
Q 006012          319 AEAVFEELKESGLKPRTKAYNA---LLKGYVKMGYLKDAEFVVSEMERSG-------VLPDE-------HTYSLLIDAYA  381 (664)
Q Consensus       319 A~~l~~~m~~~~~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g-------~~~~~-------~~~~~li~~~~  381 (664)
                      +... +.+......| ..+|..   ....+...|++.+|+++++...+.+       -.-+.       ..---|.-.+.
T Consensus       158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ  235 (652)
T KOG2376|consen  158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ  235 (652)
T ss_pred             hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            0111 0122222222 223332   2334566788888888888773321       11111       11123445566


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------CCCHHHH-HH
Q 006012          382 NAGRWESARIVLKEMEVSHAKPNSFI----YSRILAGYRDRGEWQ-RTFQVLKEMKSSGV----------EPDTHFY-NV  445 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~----------~~~~~~~-~~  445 (664)
                      ..|+.++|..++...++... +|...    -|.++..-....-++ .++..++.......          .-..... +.
T Consensus       236 ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~  314 (652)
T KOG2376|consen  236 LQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA  314 (652)
T ss_pred             HhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888877653 33322    222222211111111 11222221111000          0001111 22


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF--KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ  523 (664)
Q Consensus       446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~  523 (664)
                      ++..|.  +..+.+.++.....  +..|. ..+.+++....  +...+.+|.+++...-+..-.-........+......
T Consensus       315 lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~  389 (652)
T KOG2376|consen  315 LLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ  389 (652)
T ss_pred             HHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence            233322  22233333332222  11233 34444444332  2235778888888877765233355667777888899


Q ss_pred             CCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHH
Q 006012          524 ERWEDVKRLLG--------NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLAL  594 (664)
Q Consensus       524 g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~  594 (664)
                      |+++.|.+++.        .+.+.+.  .+.+..+++..+.+.++-+.|..++.    +|+..|..-....  +. ..++
T Consensus       390 gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~----~Ai~~~~~~~t~s--~~l~~~~  461 (652)
T KOG2376|consen  390 GNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLD----SAIKWWRKQQTGS--IALLSLM  461 (652)
T ss_pred             CCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHH----HHHHHHHHhcccc--hHHHhHH
Confidence            99999999999        5544433  45666778888999998888887754    5555555433211  11 1234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          595 NSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       595 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      .-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++.+ .++|..+-+
T Consensus       462 ~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k  515 (652)
T KOG2376|consen  462 REAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSK  515 (652)
T ss_pred             HHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence            444455567799999999999999853 678899999999999974 677776655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.14  E-value=7.7e-07  Score=93.86  Aligned_cols=298  Identities=16%  Similarity=0.176  Sum_probs=203.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM----  348 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----  348 (664)
                      ..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+.. |..-|..+..+..-.    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence            3456789999999999775443 3334556677788999999999999999999987542 445555555555222    


Q ss_pred             -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          349 -GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW-ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ  426 (664)
Q Consensus       349 -g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  426 (664)
                       .+.+...++++++...-  |.......+.-.+..-..+ ..+...+..+...|++   .+|+.+-..|....+..-..+
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence             25777888888887653  3322222222222221122 3445556666777754   345555556665555555556


Q ss_pred             HHHHHHHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006012          427 VLKEMKSS----G----------VEPDTH--FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCG  489 (664)
Q Consensus       427 ~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g  489 (664)
                      ++......    +          -.|...  ++.-+...|...|++++|++..++.+++.  |+ +..|..-...|-+.|
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC
Confidence            66555432    1          124443  44566778889999999999999999874  55 678888888999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCh
Q 006012          490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV------TY--TTLVDIYGQSGRF  561 (664)
Q Consensus       490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~  561 (664)
                      ++++|.+.++.....+ .-|...-+-....+.+.|+.++|.+++....+.+..|-..      +|  .....+|.+.|++
T Consensus       243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999887 5677777888888999999999999999988776433221      22  4456789999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Q 006012          562 DDAIECLEGLSDQAVNAFRVMRT  584 (664)
Q Consensus       562 ~~A~~~~~~~~~~a~~~~~~m~~  584 (664)
                      ..|++.|..    ..+.|..+..
T Consensus       322 ~~ALk~~~~----v~k~f~~~~~  340 (517)
T PF12569_consen  322 GLALKRFHA----VLKHFDDFEE  340 (517)
T ss_pred             HHHHHHHHH----HHHHHHHHhc
Confidence            999987652    2334555554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=5.8e-09  Score=97.82  Aligned_cols=225  Identities=9%  Similarity=-0.046  Sum_probs=181.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC  488 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  488 (664)
                      +.+.++|.+.|.+.+|.+.++.-.+.  .|-+.||..|-..|.+..+...|+.++.+-++.- +-++.....+...+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence            56778899999999999988887765  5777788888999999999999999998888652 33444445566778888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006012          489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECL  568 (664)
Q Consensus       489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  568 (664)
                      ++.++|.++++...+.. +.++.....+...|.-.++.+.|+.+++++.+.|+. ++..|+.+.-+|.-.++++-++..|
T Consensus       304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            99999999999998876 567777778888888899999999999999999987 8889999999999999999888775


Q ss_pred             hhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006012          569 EGLSDQAVNAFRVMRTDGLKPS--NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVF  646 (664)
Q Consensus       569 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~  646 (664)
                      +.           ....--.|+  ...|-.+.......|++.-|.+.|+-.+..+ .-+...++.|.-.-.+.|+.++|.
T Consensus       382 ~R-----------Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  382 QR-----------ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR  449 (478)
T ss_pred             HH-----------HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence            42           222212233  3468888888888999999999999888743 335678888888888999999999


Q ss_pred             HHHH
Q 006012          647 SSYL  650 (664)
Q Consensus       647 ~~~~  650 (664)
                      .++.
T Consensus       450 sll~  453 (478)
T KOG1129|consen  450 SLLN  453 (478)
T ss_pred             HHHH
Confidence            9887

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.11  E-value=1.1e-07  Score=98.93  Aligned_cols=241  Identities=16%  Similarity=0.169  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CC
Q 006012          371 HTYSLLIDAYANAGRWESARIVLKEMEVS-----H-AKPNSF-IYSRILAGYRDRGEWQRTFQVLKEMKSS-----G-VE  437 (664)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~  437 (664)
                      .+...+...|...|++++|+.+++...+.     | ..|... ..+.+...|...+++++|..+|+++...     | ..
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34444566666666666666666655432     1 012222 2223555667777777777777776542     2 11


Q ss_pred             C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 006012          438 P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-----GI-EPDT-ITWNTLIDCHFKCGRYDRAEELFEEMQER---GY  506 (664)
Q Consensus       438 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~  506 (664)
                      | -..+++.|...|.+.|++++|...+++..+-     |. .+.+ ..++.+...|+..+++++|..+++...+.   -.
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            2 2345666667788888888777777665431     21 1222 23566777888899999999998876542   11


Q ss_pred             CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHH
Q 006012          507 FP----CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLL--P-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQA  575 (664)
Q Consensus       507 ~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a  575 (664)
                      .+    -..+++.|...|...|++++|.+++++++..    +..  + ....++.|...|.+.+++.+|.++|.    ++
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~----~~  435 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE----EA  435 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH----HH
Confidence            22    2457889999999999999999999988753    121  1 24567788889999999999998876    33


Q ss_pred             HHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          576 VNAFRVMRTDGL-KPSN-LALNSLINAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       576 ~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~  618 (664)
                      ..+.   ...|. .|+. .+|..|...|...|++++|+++.+...
T Consensus       436 ~~i~---~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  436 KDIM---KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHH---HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3333   22232 2343 479999999999999999999988776

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.11  E-value=4.1e-07  Score=95.86  Aligned_cols=294  Identities=15%  Similarity=0.153  Sum_probs=204.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 006012          306 VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA--  383 (664)
Q Consensus       306 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--  383 (664)
                      ....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.++. |..-|..+..+..-.  
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence            345678899999999999875543 3334556677788999999999999999999998643 444555555555222  


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 006012          384 ---GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ-RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHA  459 (664)
Q Consensus       384 ---g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  459 (664)
                         .+.+....+|+++...-  |.......+.-.+.....+. .+...+..+..+|+++   +++.+-..|.......-.
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence               25788889999887654  33333322322222222333 3455666777888654   556666666655555555


Q ss_pred             HHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          460 MAAFDRMLSE----G----------IEPDTI--TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ  523 (664)
Q Consensus       460 ~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~  523 (664)
                      .+++......    +          -.|+..  ++.-+...|...|++++|+++.++.+++. +-.+..|..-.+.+-+.
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~  241 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence            6666555432    1          134443  44566778889999999999999999986 44477888899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC--CH----HHH--H
Q 006012          524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP--SN----LAL--N  595 (664)
Q Consensus       524 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p--~~----~~~--~  595 (664)
                      |++++|.+.++.....+.. |..+-+..+..+.++|++++|.+++.           ...+.+..|  |.    ..|  .
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~-----------~Ftr~~~~~~~~L~~mQc~Wf~~  309 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTAS-----------LFTREDVDPLSNLNDMQCMWFET  309 (517)
T ss_pred             CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHH-----------hhcCCCCCcccCHHHHHHHHHHH
Confidence            9999999999999998755 78888888899999999999988754           122222122  11    133  4


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          596 SLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       596 ~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ....+|.+.|++..|++.|....+
T Consensus       310 e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  310 ECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            457889999999999887776653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-07  Score=94.76  Aligned_cols=286  Identities=11%  Similarity=0.012  Sum_probs=206.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL  342 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  342 (664)
                      .+..+...-.+-+...+++.+..++++.+.+.. +++...+..-|.++...|+..+-.-+=.+|.+.- +-...+|-++.
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg  319 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG  319 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence            344455555666777788888888888887764 5677777777778888888887777777777652 33567888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ  422 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~  422 (664)
                      -.|.-.|+..+|.+.|.+....... =...|-.+...|+..|..|+|...+...-+.- +-...-+--+.--|.+.+..+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence            8888888888888888887654222 24577788888888888888888877665431 111122233445567788888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----G--IEPDTITWNTLIDCHFKCGRYDRAEE  496 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~~~~~~~~~li~~~~~~g~~~~A~~  496 (664)
                      .|.+.|.+..... +.|+...+-+.-...+.+.+.+|..+|+..+..    +  ...-..+++.|..+|.+++++++|+.
T Consensus       398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            8888888877653 567777777777777788888888888876621    1  01134457888888888888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG  556 (664)
Q Consensus       497 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  556 (664)
                      .+++.+... +-+..++.++.-.|...|+++.|.+.|.+...  +.|+..+...++..+.
T Consensus       477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            888888775 66788888888888888888888888888775  5777777776666443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.07  E-value=7.4e-06  Score=86.16  Aligned_cols=383  Identities=13%  Similarity=0.150  Sum_probs=205.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 006012          259 DKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR-TKA  337 (664)
Q Consensus       259 ~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~  337 (664)
                      ..+.-|..+|..|.-+...+|+++.+.+.|++.... .--....|+.+-..+...|.-..|..++++-......|+ ...
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~  395 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV  395 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence            344556666777776777777777777777665532 122345566666666777776667766666554332232 222


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCC
Q 006012          338 YNALLKGYV-KMGYLKDAEFVVSEMERS--GV--LPDEHTYSLLIDAYANAG-----------RWESARIVLKEMEVSHA  401 (664)
Q Consensus       338 ~~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~~~  401 (664)
                      +-..-..|. +.+..+++..+-.+....  +.  ......|..+.-+|...-           ...++++.+++..+.+.
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~  475 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP  475 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            222222222 234555555555554441  11  123344444444444321           13455556666655442


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL  481 (664)
Q Consensus       402 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  481 (664)
                       .|......+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....- ..|......-
T Consensus       476 -~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~  553 (799)
T KOG4162|consen  476 -TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK  553 (799)
T ss_pred             -CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence             22233333334455566667777776666665445566666666666666667777777666655431 1111111222


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHC-------------C--------C-------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          482 IDCHFKCGRYDRAEELFEEMQER-------------G--------Y-------FPCTTTYNIMINLLGEQERWEDVKRLL  533 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~~-------------~--------~-------~p~~~t~~~ll~~~~~~g~~~~a~~~~  533 (664)
                      +..-..-++.++|+.....+..-             |        .       .-...++..+..-...  +.+.+..-.
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~  631 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL  631 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc
Confidence            22223356666666655444320             0        0       0000111111110000  000000000


Q ss_pred             HHHHHCCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHh-----------------------hhHHHHHHHHHHH
Q 006012          534 GNMRAQGLL--PN------VVTYTTLVDIYGQSGRFDDAIECLE-----------------------GLSDQAVNAFRVM  582 (664)
Q Consensus       534 ~~m~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~-----------------------~~~~~a~~~~~~m  582 (664)
                       .+...-..  |+      ...|....+.+.+.+..++|..++.                       +...+|.+.|...
T Consensus       632 -~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A  710 (799)
T KOG4162|consen  632 -KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA  710 (799)
T ss_pred             -ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence             00100011  12      1244455566677777777654332                       4455666666666


Q ss_pred             HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          583 RTDGLKPSNL-ALNSLINAFGEDQRDAEAFA--VLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       583 ~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      ..  +.|+.+ ...++...+.+.|+..-|..  ++..+.+.+ +-+...|..|+..+-+.|+.++|-..|.
T Consensus       711 l~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  711 LA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             Hh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            55  567654 77899999999999888888  999999954 4578999999999999999999999887

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.5e-06  Score=80.73  Aligned_cols=241  Identities=13%  Similarity=0.138  Sum_probs=139.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          401 AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTH-FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN  479 (664)
Q Consensus       401 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  479 (664)
                      ++-|......+..++...|+.++|...|++.+..  .|+.. ......-.+.+.|+.+....+...+.... ..+...|-
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf  304 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF  304 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence            3445555556666666666666666666655433  12211 11111112234555555555555544321 12222333


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          480 TLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG  559 (664)
Q Consensus       480 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  559 (664)
                      .-.......++++.|+.+-++.+..+ +-+...|-.-.+.+...++.++|.-.|+..+... +-+...|..|+.+|...|
T Consensus       305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence            33333344555666666655555544 3334444444455555666666666666555431 124556666666666666


Q ss_pred             ChHHHHHHHh-------------------------hhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 006012          560 RFDDAIECLE-------------------------GLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAV  613 (664)
Q Consensus       560 ~~~~A~~~~~-------------------------~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~  613 (664)
                      ++.+|.-.-+                         ..-++|...+++-.+  +.|+-. ..+.+...|...|+.++++.+
T Consensus       383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence            6665543322                         122344444444443  456643 677888899999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          614 LQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       614 ~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      +++.+.  ..||....+.|.+.+...+.+.+|...|.
T Consensus       461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999988  68999999999999999999999998887

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=4.1e-08  Score=92.25  Aligned_cols=229  Identities=16%  Similarity=0.132  Sum_probs=144.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 006012          303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY-SLLIDAYA  381 (664)
Q Consensus       303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~  381 (664)
                      -+.+.++|.+.|.+.+|.+.|+.-++.  .|-+.||-.|-+.|.+..+.+.|..++.+-.+.  .|-.+|| .-+.+.+-
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence            345667777777777777777766654  344556666777777777777777777776654  2333333 34555666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012          382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA  461 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  461 (664)
                      ..++.++|.++|+...+.. +.++.....+...|.-.++.+.|+..++.+.+.|+ -+...|+.+.-+|.-.++++-++.
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence            6677777777777766543 34555555556666666777777777777777663 455666666666666666777776


Q ss_pred             HHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          462 AFDRMLSEGIEPD--TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       462 ~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      -|.+....--.|+  ...|-.|.......|++..|.+.|+-.+.++ ......+|.|.-.-.+.|+.++|..++.....
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            6666664322222  3345555555566677777777777666655 34456666666666677777777777666654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.02  E-value=5.3e-05  Score=78.18  Aligned_cols=361  Identities=10%  Similarity=0.122  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006012          195 TYNALISACARNDDLEKALNLMSKMRQD-GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV  273 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~  273 (664)
                      .|-.-+.....+|+...-...|++.... -+.-....|...+.-....+-..  .+.++|..-.+    .++..-+--|.
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPe--ts~rvyrRYLk----~~P~~~eeyie  177 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPE--TSIRVYRRYLK----VAPEAREEYIE  177 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChH--HHHHHHHHHHh----cCHHHHHHHHH
Confidence            5555555555566666666665554432 12223334555554444444331  12344444432    23333455555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCC--HHHHHHHH
Q 006012          274 GFAKAGDASKAMRFLGMAQGV------GLSPKTATYAAVITALSNSGRTIE---AEAVFEELKESGLKPR--TKAYNALL  342 (664)
Q Consensus       274 ~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p~--~~~~~~li  342 (664)
                      .+++.+++++|.+.+...+..      ..+.+-..|.-+-+...++-+.-.   ...+++.+...  -+|  ...|+.|.
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA  255 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA  255 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence            555666666666555544321      112333344444444444332221   22223332221  122  23455666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhcC
Q 006012          343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG----------------------RWESARIVLKEMEVSH  400 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------------~~~~A~~l~~~m~~~~  400 (664)
                      +.|.+.|.++.|..++++..+.  ..++.-|+.+.+.|+.-.                      +++-...-|+.+....
T Consensus       256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr  333 (835)
T KOG2047|consen  256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR  333 (835)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence            6666666666666666555443  112233333333333211                      1222223333332221


Q ss_pred             -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHhccCCHHHHHHHH
Q 006012          401 -----------AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP------DTHFYNVMIDTFGKYNCLHHAMAAF  463 (664)
Q Consensus       401 -----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~  463 (664)
                                 -+.+...|..-+..  ..|+..+....+.+..+. +.|      -...|..+.+.|-..|+++.|..+|
T Consensus       334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif  410 (835)
T KOG2047|consen  334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF  410 (835)
T ss_pred             chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence                       12333444443332  345566667777776553 122      1245677778888888888888888


Q ss_pred             HHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CC------CCHHHHHHHHHHHHhc
Q 006012          464 DRMLSEGIEPD---TITWNTLIDCHFKCGRYDRAEELFEEMQERG-----------YF------PCTTTYNIMINLLGEQ  523 (664)
Q Consensus       464 ~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~------p~~~t~~~ll~~~~~~  523 (664)
                      ++..+...+--   ..+|..-..+-.++.+++.|+++.++...--           .+      -+...|...++.-...
T Consensus       411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~  490 (835)
T KOG2047|consen  411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL  490 (835)
T ss_pred             HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence            88876543222   3445555555566777888888777664321           11      1233455555555666


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       524 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      |-++....+++++++..+. ++.+.-.....+-...-++++.++++
T Consensus       491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7777777888887776554 33333333333444555555555554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=2.8e-05  Score=75.94  Aligned_cols=294  Identities=13%  Similarity=0.051  Sum_probs=195.5

Q ss_pred             HHHHHHHHHH--HcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 006012          267 LLNDVIVGFA--KAGDASKAMRFLGMAQGVG-LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNALL  342 (664)
Q Consensus       267 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li  342 (664)
                      .....+.+++  -.++-..|...+-.+.... ++-|+.....+.+.+...|+.++|...|++....  .|+.. ......
T Consensus       196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya  273 (564)
T KOG1174|consen  196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYA  273 (564)
T ss_pred             HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHH
Confidence            3333444443  3456666666555544332 4556778888889999999999999999887654  23222 222223


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ  422 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~  422 (664)
                      ..+.+.|+.+....+...+.... +-...-|-.-.......++++.|+.+-++.++.+ +.+...+-.-...+...++.+
T Consensus       274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~  351 (564)
T KOG1174|consen  274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT  351 (564)
T ss_pred             HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence            33456777887777777766432 1123333333444456778888888888877654 334455555566778888899


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLI-DCHF-KCGRYDRAEELFEE  500 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~  500 (664)
                      +|.-.|+...... +-+..+|..|+..|...|.+.+|.-.-+...+. +..+..+.+.+. ..+. ....-++|.++++.
T Consensus       352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence            9988888877653 457788999999999999988888776665543 123444544442 2221 22335788888888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      -.... +.-....+.+...|...|..+.+..++++...  ..||...-+.|.+.+...+.+.+|.+.|.
T Consensus       430 ~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  430 SLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             hhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            77654 22345667777888888999999999988876  46888888999999998888888887765

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.98  E-value=4.3e-06  Score=86.80  Aligned_cols=195  Identities=18%  Similarity=0.283  Sum_probs=125.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012          341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE  420 (664)
Q Consensus       341 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~  420 (664)
                      .+.+......+.+|+.+++.+.....  -..-|..+.+.|+..|+++.|.++|.+.-         .++-.|..|.+.|+
T Consensus       738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence            34445556678888888887776532  33456677788888888888888886542         34556778888888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012          421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEE  500 (664)
Q Consensus       421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  500 (664)
                      |+.|.++-.+..  |.......|.+-..-+-+.|++.+|+++|-.+.    .|+.     -|.+|-+.|..+..+++..+
T Consensus       807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence            888887766643  334455566666666677788888877775443    3443     35677777777777777665


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          501 MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       501 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      -....   -..|...+..-+...|++..|.+-|-+..+         |.+-+++|-..+.+++|.++-.
T Consensus       876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence            42221   123455566666777777777766544432         4555666666666666666543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=2.1e-05  Score=75.19  Aligned_cols=463  Identities=14%  Similarity=0.096  Sum_probs=265.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSK  218 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  218 (664)
                      ..|++++|..++..+.....++.  .+.-.|.-.+.-.|.+.+|.......+.++..-..|...--+.|+-++-+.+-..
T Consensus        69 hLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~  146 (557)
T KOG3785|consen   69 HLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS  146 (557)
T ss_pred             hhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            56899999999999987664333  4555566566667889999998888888887777888888888887777777666


Q ss_pred             HHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006012          219 MRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV-IVGFAKAGDASKAMRFLGMAQGVGLS  297 (664)
Q Consensus       219 m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g~~  297 (664)
                      +...  .-|..+...+  .+.+. .+  ..|..+|..+...+  |.-...|.- .-+|.+..-++-+.+++.--.+. ++
T Consensus       147 LqD~--~EdqLSLAsv--hYmR~-HY--QeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~p  216 (557)
T KOG3785|consen  147 LQDT--LEDQLSLASV--HYMRM-HY--QEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FP  216 (557)
T ss_pred             Hhhh--HHHHHhHHHH--HHHHH-HH--HHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CC
Confidence            6542  1111111111  11111 11  22447777776543  333444443 34677888888888888776653 34


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM-----GYLKDAEFVVSEMERSGVLPDEHT  372 (664)
Q Consensus       298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~  372 (664)
                      .++...|.......+.=.-..|.+-..++.+.+-..    | -.+.-.++.     ..-+.|.+++--+.+.  -|  ..
T Consensus       217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EA  287 (557)
T KOG3785|consen  217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EA  287 (557)
T ss_pred             CcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hh
Confidence            456667766665555433333444444444432211    1 123333333     2346777777666553  22  23


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHH-HHH
Q 006012          373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG-------EWQRTFQVLKEMKSSGVEPDTH-FYN  444 (664)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~-~~~  444 (664)
                      --.|+--|.+.+++.+|..+.+++.    +.++.-|-.-.-.+...|       ...-|.+.|...-..+..-|.. --.
T Consensus       288 RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ  363 (557)
T KOG3785|consen  288 RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ  363 (557)
T ss_pred             hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence            3445666889999999998887764    222222222112222222       3445555555544444332221 123


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE  524 (664)
Q Consensus       445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g  524 (664)
                      ++...+.-..++++++-.++.+...-...|...+| +..+++..|.+.+|.++|-++....++.+..-...+.++|.+.+
T Consensus       364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk  442 (557)
T KOG3785|consen  364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK  442 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence            34444455566888888888777654444444444 67889999999999999988876665444444445567788888


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          525 RWEDVKRLLGNMRAQGLLPNVVTY-TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE  603 (664)
Q Consensus       525 ~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  603 (664)
                      ..+.|.+++-++..   ..+.... -.+..-|-+++++--|-+.           |+.+..  ..|++.-|.        
T Consensus       443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA-----------Fd~lE~--lDP~pEnWe--------  498 (557)
T KOG3785|consen  443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA-----------FDELEI--LDPTPENWE--------  498 (557)
T ss_pred             CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHc--cCCCccccC--------
Confidence            88888776654432   2233333 3344667788877766655           444444  467777773        


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012          604 DQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVFSSYLFFN  653 (664)
Q Consensus       604 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~  653 (664)
                       |+-.....+|+.+....-.|- ..+..-++..+...+ -.+++-..+.++
T Consensus       499 -GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~-nsq~E~mikvvr  547 (557)
T KOG3785|consen  499 -GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKP-NSQCEFMIKVVR  547 (557)
T ss_pred             -CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence             444444455665554333332 234444554443333 233443444333

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.96  E-value=1.2e-06  Score=87.42  Aligned_cols=232  Identities=13%  Similarity=-0.011  Sum_probs=146.7

Q ss_pred             CCHHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006012          384 GRWESARIVLKEMEVSH-AKP--NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM  460 (664)
Q Consensus       384 g~~~~A~~l~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  460 (664)
                      +..+.++.-+.++.... ..|  ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            35566666666665432 111  13456666777778888888888888877764 446778888888888888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       461 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      ..|+...+.. +-+...|..+..++...|++++|.+.|++..+.+  |+..........+...++.++|.+.+.+.....
T Consensus       119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            8888888754 2346677778888888899999999999888764  332222222223445678899999887655432


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                       .|+...   ........|+...+ +.++.    +.+.++.-.+  +.| ....|..+...+.+.|++++|+..|++..+
T Consensus       196 -~~~~~~---~~~~~~~lg~~~~~-~~~~~----~~~~~~~~~~--l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~  264 (296)
T PRK11189        196 -DKEQWG---WNIVEFYLGKISEE-TLMER----LKAGATDNTE--LAERLCETYFYLAKYYLSLGDLDEAAALFKLALA  264 (296)
T ss_pred             -CccccH---HHHHHHHccCCCHH-HHHHH----HHhcCCCcHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             223221   12233345555443 12111    1100100000  011 235788999999999999999999999998


Q ss_pred             CCCCCCHHHHHH
Q 006012          620 NGLKPDVVTYTT  631 (664)
Q Consensus       620 ~g~~p~~~~~~~  631 (664)
                      .+ +||.+-+..
T Consensus       265 ~~-~~~~~e~~~  275 (296)
T PRK11189        265 NN-VYNFVEHRY  275 (296)
T ss_pred             hC-CchHHHHHH
Confidence            43 446655554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.95  E-value=1e-05  Score=85.10  Aligned_cols=125  Identities=15%  Similarity=0.077  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      .|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|.....-+ +.++....++...+.
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            34455667788888888888888877643 3456667777778888999999999999998876 556778889999999


Q ss_pred             hcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          522 EQERWEDVKR--LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       522 ~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      +.|+..-+..  ++.++.+.+.. +...|-.+...+-+.|+.+.|.++|+
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHH
Confidence            9998877777  99999997644 78999999999999999999999876

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.95  E-value=4.5e-05  Score=79.46  Aligned_cols=295  Identities=16%  Similarity=0.217  Sum_probs=184.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006012          199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA  278 (664)
Q Consensus       199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~  278 (664)
                      -|.+..+...+.+|+.+++.+..+.  .-.-.|..+...|+..|++  .+++++|-+.         ..++..|.+|.+.
T Consensus       738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~df--e~ae~lf~e~---------~~~~dai~my~k~  804 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDF--EIAEELFTEA---------DLFKDAIDMYGKA  804 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhH--HHHHHHHHhc---------chhHHHHHHHhcc
Confidence            3445567788888998888887763  3344577788888888887  4455666543         2467789999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV  358 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  358 (664)
                      |+++.|.++-++..  |.......|.+-..-+-+.|++.+|.++|-.+.    .|+     ..|.+|-+.|..+..+++.
T Consensus       805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv  873 (1636)
T KOG3616|consen  805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLV  873 (1636)
T ss_pred             ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHH
Confidence            99999998876654  334456677777888889999999999885543    244     3678888999888888877


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------
Q 006012          359 SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM-------  431 (664)
Q Consensus       359 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m-------  431 (664)
                      ++---.   .-..|...+..-|-..|+...|..-|-+...         |.+.++.|...+.|++|..+-+.-       
T Consensus       874 ~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k  941 (1636)
T KOG3616|consen  874 EKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEK  941 (1636)
T ss_pred             HHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHH
Confidence            664321   1234556677778888888888877765432         555667777777777776554321       


Q ss_pred             -------HHCCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012          432 -------KSSGVEPDTH------FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELF  498 (664)
Q Consensus       432 -------~~~g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  498 (664)
                             +..|-..-+.      ....-++..+..+.++-|.++-+...+.. .+.+.  -.+..-+-..|++++|-+.+
T Consensus       942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen  942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred             HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhh
Confidence                   1111000000      01112233344455555555554444432 22222  22333456789999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHH-----HHHHhcC-CHHHHHHHHH
Q 006012          499 EEMQERGYFPCTTTYNIMI-----NLLGEQE-RWEDVKRLLG  534 (664)
Q Consensus       499 ~~m~~~~~~p~~~t~~~ll-----~~~~~~g-~~~~a~~~~~  534 (664)
                      -+.++.+ .- ..||...+     --+.+.| +.++|..+|-
T Consensus      1019 veaikln-ty-nitwcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen 1019 VEAIKLN-TY-NITWCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred             HHHhhcc-cc-cchhhhcccchhhHHHHHcCCChHHHHHHhh
Confidence            8888765 11 23333221     2244566 6888887773

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.92  E-value=1.4e-06  Score=86.90  Aligned_cols=225  Identities=14%  Similarity=0.020  Sum_probs=114.5

Q ss_pred             CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          279 GDASKAMRFLGMAQGVG-LSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE  355 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  355 (664)
                      +..+.++.-+.++.... ..|+  ...|..+...+.+.|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence            34455555555555321 1111  34455666666666777777666666665432 24566666666666677777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG  435 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  435 (664)
                      ..|+...+.... +..+|..+...+...|++++|.+.|+...+..  |+..........+...++.++|...|.......
T Consensus       119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            666666654322 34556666666666667777766666666543  222111111122334456666666665543221


Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012          436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE---GI---EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC  509 (664)
Q Consensus       436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  509 (664)
                       .++...+ .+...  ..|+...+ ..+..+.+.   ..   +.....|..+...+.+.|++++|...|++..+.+ +|+
T Consensus       196 -~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~  269 (296)
T PRK11189        196 -DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN  269 (296)
T ss_pred             -CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence             2221111 12211  22333222 233333211   00   1123456666677777777777777777777655 334


Q ss_pred             HHHH
Q 006012          510 TTTY  513 (664)
Q Consensus       510 ~~t~  513 (664)
                      -+-+
T Consensus       270 ~~e~  273 (296)
T PRK11189        270 FVEH  273 (296)
T ss_pred             HHHH
Confidence            3333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=1.3e-05  Score=84.46  Aligned_cols=400  Identities=15%  Similarity=0.111  Sum_probs=202.5

Q ss_pred             hHHHHHHHH--HHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006012          162 YELLYSILI--HALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT  239 (664)
Q Consensus       162 ~~~~~~~li--~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  239 (664)
                      ++.+...++  +.|...|+.+.|++-.+-. .+...|..|.+.|++..+++-|.-.+-.|...-                
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------------  787 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------------  787 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHH-hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----------------
Confidence            345555665  4678889999998763332 244589999999999999999988888886521                


Q ss_pred             hcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012          240 RTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEA  319 (664)
Q Consensus       240 ~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  319 (664)
                               ..+.+.+..+.+-+    .-..........|.+++|+.+|++-.+         |..|=..|-..|++++|
T Consensus       788 ---------gaRAlR~a~q~~~e----~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA  845 (1416)
T KOG3617|consen  788 ---------GARALRRAQQNGEE----DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEA  845 (1416)
T ss_pred             ---------hHHHHHHHHhCCcc----hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHH
Confidence                     00111111111100    000011112233455555555544433         22222333444555555


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHH
Q 006012          320 EAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME----------RSG---------VLPDEHTYSLLIDAY  380 (664)
Q Consensus       320 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~g---------~~~~~~~~~~li~~~  380 (664)
                      .++-+.--+..+   ..||......+-..++++.|++.|++..          ...         -..|...|.-....+
T Consensus       846 ~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl  922 (1416)
T KOG3617|consen  846 FEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL  922 (1416)
T ss_pred             HHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH
Confidence            444433221111   1233333333333444444444333211          000         012334444444445


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006012          381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM  460 (664)
Q Consensus       381 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  460 (664)
                      -..|+.+.|+.+|...+.         |.++++..|-.|+.++|-++-++      .-|......+...|-..|++.+|.
T Consensus       923 ES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av  987 (1416)
T KOG3617|consen  923 ESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAV  987 (1416)
T ss_pred             hcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHH
Confidence            556777777777776653         55667777778888888777665      346677777888888888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHH-------------cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          461 AAFDRMLSEGIEPDTITWNTLIDCHFK-------------CG--RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER  525 (664)
Q Consensus       461 ~~~~~m~~~g~~~~~~~~~~li~~~~~-------------~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~  525 (664)
                      ..|.+...         +..-|..|-.             .|  +.-.|-++|++.   |.     -+...+..|-++|.
T Consensus       988 ~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen  988 KFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGM 1050 (1416)
T ss_pred             HHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcc
Confidence            88876542         2222222111             11  122222333322   10     11122334555666


Q ss_pred             HHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHh--hhHHHHHHH-----------HHHH
Q 006012          526 WEDVKRLLG--------NMRAQ--GLLPNVVTYTTLVDIYGQSGRFDDAIECLE--GLSDQAVNA-----------FRVM  582 (664)
Q Consensus       526 ~~~a~~~~~--------~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~a~~~-----------~~~m  582 (664)
                      +.+|+++--        +++..  ....|+...+--.+-++...++++|..++-  ...+.|+.+           |.+|
T Consensus      1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~ 1130 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAEL 1130 (1416)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHh
Confidence            655554432        11222  233466777766777777777777777653  122222221           1122


Q ss_pred             HH--CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006012          583 RT--DGLKPSN----LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHK  644 (664)
Q Consensus       583 ~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~  644 (664)
                      ..  +.-.|+.    .....+...|.+.|.+..|-+-|.++-.   +      ...++++.++|+.++
T Consensus      1131 mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1131 MTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred             cCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcce
Confidence            11  1112222    2456667777777777777765554422   1      234556666666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=0.00019  Score=75.99  Aligned_cols=461  Identities=14%  Similarity=0.171  Sum_probs=253.6

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-------------hCCCCCCHHHHHHHHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-------------SQRQRLTPLTYNALISACAR  205 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~li~~~~~  205 (664)
                      ..|+.+.|++-.+.+..       ..+|..|.+++.+..+++-|...             .+..+.+...=-........
T Consensus       740 tiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie  812 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE  812 (1416)
T ss_pred             EeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence            35778888877766532       35789999999998888877654             00011110111112222357


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012          206 NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAM  285 (664)
Q Consensus       206 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~  285 (664)
                      .|..++|..+|++.++.+         .+=+.|-..|.++++.  ++-+.-.  .+.. ..+|-.-..-+-..++.+.|+
T Consensus       813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~--eiAE~~D--RiHL-r~Tyy~yA~~Lear~Di~~Al  878 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAF--EIAETKD--RIHL-RNTYYNYAKYLEARRDIEAAL  878 (1416)
T ss_pred             HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHH--HHHhhcc--ceeh-hhhHHHHHHHHHhhccHHHHH
Confidence            799999999999988743         2333445566665443  2222111  1111 223444444455567777777


Q ss_pred             HHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          286 RFLGMAQ----------GVG---------LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       286 ~~~~~~~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      +.|++..          ...         -..|...|......+-..|+.+.|+.+|.....         |-.+++..|
T Consensus       879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C  949 (1416)
T KOG3617|consen  879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC  949 (1416)
T ss_pred             HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence            7776421          111         123444455556666667888888888876653         566788888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG-------  419 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g-------  419 (664)
                      -.|+.++|-++-++-      -|......|.+.|-..|++.+|...|.+.+.         +...|+.|-.++       
T Consensus       950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen  950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred             eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence            899999998886653      2667778899999999999999999987653         333333332222       


Q ss_pred             --------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH--------HHH--CCCCCCHHHHHHH
Q 006012          420 --------EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR--------MLS--EGIEPDTITWNTL  481 (664)
Q Consensus       420 --------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~--~g~~~~~~~~~~l  481 (664)
                              +.-.|-.+|++.   |..     ....+..|-+.|.+.+|+++--+        ++.  .....|....+.-
T Consensus      1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred             HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence                    122222333321   110     12233456667777666654211        111  1223455666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH----------CC----------------CCCCHH----HHHHHHHHHHhcCCHHHHHH
Q 006012          482 IDCHFKCGRYDRAEELFEEMQE----------RG----------------YFPCTT----TYNIMINLLGEQERWEDVKR  531 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~----------~~----------------~~p~~~----t~~~ll~~~~~~g~~~~a~~  531 (664)
                      .+-++...++++|..++-...+          +|                -.|+..    ....+...|.++|.+..|-+
T Consensus      1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            6666666777776665543221          11                123333    34455567777777766554


Q ss_pred             HHHHH----------HHCC-----------------------------CCCCHHHHHHHHHHHHhcCChH------HHHH
Q 006012          532 LLGNM----------RAQG-----------------------------LLPNVVTYTTLVDIYGQSGRFD------DAIE  566 (664)
Q Consensus       532 ~~~~m----------~~~~-----------------------------~~p~~~~~~~li~~~~~~g~~~------~A~~  566 (664)
                      -|.+.          .+.|                             .+-++.+...++.-|.|..-++      ++-.
T Consensus      1167 KfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cA 1246 (1416)
T KOG3617|consen 1167 KFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCA 1246 (1416)
T ss_pred             HHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHH
Confidence            44322          1111                             2334444444444444332222      2111


Q ss_pred             HHh-----------hhHHHHHHHHHHHHHCCCCCCHHHHHHH----------HHHHH-hcCCHHHHHHHHHHHHHCCCCC
Q 006012          567 CLE-----------GLSDQAVNAFRVMRTDGLKPSNLALNSL----------INAFG-EDQRDAEAFAVLQYMKENGLKP  624 (664)
Q Consensus       567 ~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l----------i~~~~-~~g~~~~A~~~~~~m~~~g~~p  624 (664)
                      .++           |..++|-..+.+...+..  ....++.|          +.... -..+..+.++-.+.|.+..+-|
T Consensus      1247 qiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1247 QIEIEELQTYDKAMGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred             HhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence            111           334444444444443221  11123322          11111 1236666777777777765444


Q ss_pred             C----HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 006012          625 D----VVTYTTLMKALIRVDKFHKVFSSYLFFNI  654 (664)
Q Consensus       625 ~----~~~~~~l~~a~~~~g~~~~A~~~~~~~~~  654 (664)
                      |    ...|..|+..+.+..++..|-++++-++.
T Consensus      1325 ~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1325 DIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred             CcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence            3    46788999999999999999999886543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.89  E-value=1.8e-05  Score=81.78  Aligned_cols=208  Identities=10%  Similarity=0.013  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDT--ITWNTLID  483 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~  483 (664)
                      ....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .++.  ..|..+..
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~  194 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL  194 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence            33444556666667777777776666653 33455566666667777777777777776665321 1222  23445666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHH
Q 006012          484 CHFKCGRYDRAEELFEEMQERGY-FPCTTTY-N--IMINLLGEQERWEDVKRL---LGNMRAQGL-LPNVVTYTTLVDIY  555 (664)
Q Consensus       484 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~-~--~ll~~~~~~g~~~~a~~~---~~~m~~~~~-~p~~~~~~~li~~~  555 (664)
                      .+...|++++|..++++...... .+..... +  .++.-+...|..+.+.+.   ......... ............++
T Consensus       195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~  274 (355)
T cd05804         195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL  274 (355)
T ss_pred             HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            77777888888888877654321 1112111 1  222233333332222222   111111100 11122223566777


Q ss_pred             HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          556 GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       556 ~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ...|+.+.|...++.....+..    |...+... ..........++...|+.++|.+.+.+...
T Consensus       275 ~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         275 AGAGDKDALDKLLAALKGRASS----ADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             hcCCCHHHHHHHHHHHHHHHhc----cCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888888877654433322    10011111 122233344556788999999999888875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=3e-05  Score=83.60  Aligned_cols=353  Identities=14%  Similarity=0.134  Sum_probs=176.1

Q ss_pred             HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006012          250 QKLYKEIECDKI--ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTIEAEAVFEE  325 (664)
Q Consensus       250 ~~l~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  325 (664)
                      +++.+..+.-++  ..|..-.+..+.++...+-..+-+++++++.-..  +.-+...-|.||-...+.. .....+..++
T Consensus       967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~r 1045 (1666)
T KOG0985|consen  967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINR 1045 (1666)
T ss_pred             HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHH
Confidence            345555554433  2355566667777777777777777777766321  1112222333333333332 2233333333


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH
Q 006012          326 LKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS  405 (664)
Q Consensus       326 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~  405 (664)
                      +..-+. |+      +...+...+-+++|..+|+...     .+..+.+.||.-   .+..+.|.+.-++.      ..+
T Consensus      1046 LdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p 1104 (1666)
T KOG0985|consen 1046 LDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEP 1104 (1666)
T ss_pred             hccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CCh
Confidence            332211 11      2333444455666666666543     244444444432   34455555444433      234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          406 FIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH  485 (664)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  485 (664)
                      ..|+.+..+-.+.|...+|++-|-+      ..|+..|..+++...+.|.+++..+.+....+...+|.+.  +.||-+|
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence            5667777777777777666665544      3456667777777777777777777776666655444433  4566677


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI  565 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  565 (664)
                      ++.++..+-.++..       .|+......+.+-|...+.++.|.-++...         .-|..|...+...|++..|.
T Consensus      1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred             HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence            77776665554431       455555555555566666655555544432         22333333333444443333


Q ss_pred             HHHh-------------hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 006012          566 ECLE-------------GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTT  631 (664)
Q Consensus       566 ~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~  631 (664)
                      +.-+             ...+.-.--+.+|...++..-..-...++.-|-..|-+++.+.+++..+  |++- ....|.-
T Consensus      1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTE 1318 (1666)
T ss_pred             HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHH
Confidence            2211             0000000001222222222333445667777777777777777665443  2222 1233444


Q ss_pred             HHHHHHhcCCHhHHHHHHHH
Q 006012          632 LMKALIRVDKFHKVFSSYLF  651 (664)
Q Consensus       632 l~~a~~~~g~~~~A~~~~~~  651 (664)
                      |.-.|.+ =+.++.++.+++
T Consensus      1319 LaiLYsk-ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1319 LAILYSK-YKPEKMMEHLKL 1337 (1666)
T ss_pred             HHHHHHh-cCHHHHHHHHHH
Confidence            4444443 234455554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.85  E-value=2.7e-05  Score=80.51  Aligned_cols=298  Identities=12%  Similarity=0.045  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGL-SPKT-ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      .|..+...+...|+.+++.+.+....+... ..+. .........+...|++++|.+++++..+... .+...+.. ...
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~   85 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence            334444444455555555555544433211 1121 1122223344556677777777766665421 23333331 112


Q ss_pred             HHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012          345 YVK----MGYLKDAEFVVSEMERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG  419 (664)
Q Consensus       345 ~~~----~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g  419 (664)
                      +..    .+..+.+.+.++..  ....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence            222    23344444444331  111222 2333445556666777777777777776654 334555666666777777


Q ss_pred             CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHH
Q 006012          420 EWQRTFQVLKEMKSSGV-EPDT--HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-EPDTITW-N--TLIDCHFKCGRYD  492 (664)
Q Consensus       420 ~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~-~--~li~~~~~~g~~~  492 (664)
                      ++++|...+++...... .++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|..+
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence            77777777776655321 1222  2344566667777777777777777653221 1111111 1  2222223333322


Q ss_pred             HHHHH--H-HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCC
Q 006012          493 RAEEL--F-EEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL------P--NVVTYTTLVDIYGQSGR  560 (664)
Q Consensus       493 ~A~~~--~-~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------p--~~~~~~~li~~~~~~g~  560 (664)
                      .+.+.  . ....... .............++...|+.++|..++..+......      .  .........-++...|+
T Consensus       243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~  322 (355)
T cd05804         243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN  322 (355)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence            22222  1 1111110 0111122224566677888888888888887663211      0  11222233344668889


Q ss_pred             hHHHHHHHh
Q 006012          561 FDDAIECLE  569 (664)
Q Consensus       561 ~~~A~~~~~  569 (664)
                      .++|.+.+.
T Consensus       323 ~~~A~~~L~  331 (355)
T cd05804         323 YATALELLG  331 (355)
T ss_pred             HHHHHHHHH
Confidence            999888765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.85  E-value=4.2e-06  Score=75.61  Aligned_cols=199  Identities=12%  Similarity=-0.002  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      +.-.|.-.|...|+...|..-+++.++.+ +.+..+|..+...|-+.|+.+.|.+-|++..+.... +..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            34456678999999999999999998865 445778999999999999999999999998876433 6678888999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          347 KMGYLKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF  425 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  425 (664)
                      ..|++++|.+.|++......-+ -..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence            9999999999999987652221 24677778888888899999999999887764 334456667777888888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 006012          426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE  469 (664)
Q Consensus       426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  469 (664)
                      ..++.....+. ++..+.-..|..--..|+.+.+-+.-..+.+.
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            88888777664 77777777777777777777776666555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.81  E-value=6.1e-06  Score=74.58  Aligned_cols=194  Identities=14%  Similarity=0.059  Sum_probs=102.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012          411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR  490 (664)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  490 (664)
                      +.-.|...|+...|.+-+++.++.. +.+..++..+...|.+.|+.+.|.+.|+...+.. +.+..+.|....-+|..|+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence            3445555555555555555555543 3344555555555666666666666666655543 2234445555555566666


Q ss_pred             HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          491 YDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       491 ~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      +++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.+++..+.... .+.+...+.+...+.|++..|...++
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence            666666666655431 1122345555555555666666666666666654322 23445555555666666665554422


Q ss_pred             hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          570 GLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       570 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                                 .....+ .++..+....|..-...|+.+.|.++=.++..
T Consensus       198 -----------~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         198 -----------RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             -----------HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                       222222 25555555555555556666666555554444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=0.00031  Score=72.17  Aligned_cols=372  Identities=12%  Similarity=0.091  Sum_probs=191.2

Q ss_pred             ccCCHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCCChHHHHHH
Q 006012          175 RSEKLYEAFLLSQRQ-RLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLT-RTNKIDSSLLQKL  252 (664)
Q Consensus       175 ~~~~~~~A~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~~~~~~l  252 (664)
                      +.++.++|.....+. +.+..+...-...+.+.|++++|+.+|+.+.+.+. ++   +..-+.+-+ ..+.   +  ...
T Consensus        91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a---~--l~~  161 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAA---A--LQV  161 (652)
T ss_pred             HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHH---h--hhH
Confidence            455666665553322 22333444445566677777777777777766542 11   111111100 0000   0  000


Q ss_pred             HHHHHhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCC------CCC---HH-----HHHHHHHHHHhcCC
Q 006012          253 YKEIECDKIELDGQLLNDV---IVGFAKAGDASKAMRFLGMAQGVGL------SPK---TA-----TYAAVITALSNSGR  315 (664)
Q Consensus       253 ~~~~~~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~------~~~---~~-----~~~~li~~~~~~g~  315 (664)
                       ..+......+ ..+|..+   ...+...|++.+|+++++...+.+.      ..+   ..     .-..+.-++-..|+
T Consensus       162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence             0111111122 2233333   3345567888888888877732110      011   11     11223345566788


Q ss_pred             hHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHC-----------CCCCCHHHHHHHHHH
Q 006012          316 TIEAEAVFEELKESGLKPRT----KAYNALLKGYVKMGYLK-DAEFVVSEMERS-----------GVLPDEHTYSLLIDA  379 (664)
Q Consensus       316 ~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~m~~~-----------g~~~~~~~~~~li~~  379 (664)
                      .++|..+|...++.... |.    ..-|.|+..-....-++ .+...++.....           .-.-....-+.++..
T Consensus       240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l  318 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL  318 (652)
T ss_pred             hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887776543 43    22333333221111111 111111111100           000011111223333


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006012          380 YANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD--RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH  457 (664)
Q Consensus       380 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  457 (664)
                      |.  +..+.+.++......  ..|. ..+..++..+.+  ...+..+.+++...-+....-..++.-.++......|+++
T Consensus       319 ~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~  393 (652)
T KOG2376|consen  319 FT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE  393 (652)
T ss_pred             Hh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence            32  233334333333221  1222 334444443332  2246677777777665532223456666777888999999


Q ss_pred             HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH----Hhc
Q 006012          458 HAMAAFD--------RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMINLL----GEQ  523 (664)
Q Consensus       458 ~A~~~~~--------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~----~~~  523 (664)
                      .|.+++.        .+.+.+..|-.  -.++...|.+.++-+.|..++.+....  .-.+.....+.++.-.    .+.
T Consensus       394 ~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~  471 (652)
T KOG2376|consen  394 VALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH  471 (652)
T ss_pred             HHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence            9999999        55555555544  455677788888877788888777542  1122334444444433    467


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          524 ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       524 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      |+-++|..+++++.+.+ .+|..+...++.+|++. +++.|..+
T Consensus       472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l  513 (652)
T KOG2376|consen  472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL  513 (652)
T ss_pred             CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence            99999999999999864 46899999999999987 56666654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=4.5e-05  Score=71.35  Aligned_cols=297  Identities=13%  Similarity=0.079  Sum_probs=173.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAA-VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL  342 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  342 (664)
                      +....+.|..+|....++..|-+.++++...  .|...-|.. -...+.+.+.+.+|+++...|...   ++...-..-+
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL  117 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL  117 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence            3444555666777777777777777777653  355444443 245666777778888877777642   2211111111


Q ss_pred             H--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012          343 K--GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE  420 (664)
Q Consensus       343 ~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~  420 (664)
                      .  .....+++..+..++++....|   +..+.+.......+.|+++.|.+-|+...+.+.--....|+..+ +..+.++
T Consensus       118 qaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~q  193 (459)
T KOG4340|consen  118 QAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQ  193 (459)
T ss_pred             HHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhh
Confidence            1  2234566777777777665432   34444444444567788888888887777655444455565444 4455677


Q ss_pred             HHHHHHHHHHHHHCCCC-------------CCH--------HHHHHHHH-------HHhccCCHHHHHHHHHHHHH-CCC
Q 006012          421 WQRTFQVLKEMKSSGVE-------------PDT--------HFYNVMID-------TFGKYNCLHHAMAAFDRMLS-EGI  471 (664)
Q Consensus       421 ~~~a~~~~~~m~~~g~~-------------~~~--------~~~~~li~-------~~~~~g~~~~A~~~~~~m~~-~g~  471 (664)
                      ++.|++...++.++|++             ||+        ..-+.++.       .+.+.|+.+.|.+.+-.|.- ...
T Consensus       194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~  273 (459)
T KOG4340|consen  194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE  273 (459)
T ss_pred             HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence            77788877777776542             121        11233333       34567888888888877752 222


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006012          472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTYTT  550 (664)
Q Consensus       472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~  550 (664)
                      ..|.+|...+.-. -..+++-+..+-+.-+...+ +-...||..++-.||+..-++.|-+++.+-...-.+ .+...|+.
T Consensus       274 elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L  351 (459)
T KOG4340|consen  274 ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL  351 (459)
T ss_pred             cCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH
Confidence            3455555443322 12455666666666666665 344778888888999999999888887654332111 23444443


Q ss_pred             HHHHHHhcCChHHHHHHHhhh
Q 006012          551 LVDIYGQSGRFDDAIECLEGL  571 (664)
Q Consensus       551 li~~~~~~g~~~~A~~~~~~~  571 (664)
                      |=.........++|.+-++++
T Consensus       352 LdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  352 LDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             HHHHHhCCCCHHHHHHHHHHH
Confidence            333333455667776655543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=6.3e-05  Score=76.30  Aligned_cols=383  Identities=13%  Similarity=0.035  Sum_probs=230.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN  214 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~  214 (664)
                      +.++++.|...|..++...  |.+..+|+.-..+|++.|++.+|..-    ....+.-+..|.....++.-.|++++|+.
T Consensus        14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~   91 (539)
T KOG0548|consen   14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL   91 (539)
T ss_pred             ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence            5689999999999998876  66788999999999999999998865    33445557899999999999999999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHH-HHHHHHHHHhCC---CCCCHHHHHHHHHHH----------HHcCC
Q 006012          215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL-LQKLYKEIECDK---IELDGQLLNDVIVGF----------AKAGD  280 (664)
Q Consensus       215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~-~~~l~~~~~~~~---~~~d~~~~~~li~~~----------~~~g~  280 (664)
                      -|.+-.+.. +-|...++-+.++.......+... .-.++..+....   .......|..++..+          ...-.
T Consensus        92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r  170 (539)
T KOG0548|consen   92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR  170 (539)
T ss_pred             HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence            999987763 334445555554441110000000 000111110000   000001111121111          11001


Q ss_pred             HHHHHHHHHH-----HHhC-------CCCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006012          281 ASKAMRFLGM-----AQGV-------GLSP------------K----------TATYAAVITALSNSGRTIEAEAVFEEL  326 (664)
Q Consensus       281 ~~~A~~~~~~-----~~~~-------g~~~------------~----------~~~~~~li~~~~~~g~~~~A~~l~~~m  326 (664)
                      +..|.-.+..     ....       +..|            |          ..-...+.+...+..+++.|.+-+...
T Consensus       171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a  250 (539)
T KOG0548|consen  171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA  250 (539)
T ss_pred             HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            1111111100     0000       0011            0          112445666677777778888888777


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhc
Q 006012          327 KESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSL-------LIDAYANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       327 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~  399 (664)
                      .+..  -+..-++....+|...|...++...-....+.|-. ...-|+.       +..+|.+.++++.++..|.+....
T Consensus       251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte  327 (539)
T KOG0548|consen  251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE  327 (539)
T ss_pred             HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence            7654  35555667777778888777777766666655432 2222222       233555667777777777776544


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT-HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITW  478 (664)
Q Consensus       400 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~  478 (664)
                      ...|+.         ..+....+++....+...-.  .|.. .-.-.-...+.+.|++..|...|.++++.. +-|...|
T Consensus       328 ~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY  395 (539)
T KOG0548|consen  328 HRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY  395 (539)
T ss_pred             hcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence            333222         12223333343333332222  2222 111222556778899999999999999876 5678899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      .....+|.+.|.+..|++-.+..++.+ ++....|..-..++....++++|.+.|.+..+.+
T Consensus       396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999888888775 5555666666667777788999999999888764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.75  E-value=0.00013  Score=85.55  Aligned_cols=369  Identities=13%  Similarity=0.027  Sum_probs=222.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      +......|...|++.+|.........   .+. ..............|+++.+...++.+.......+..........+.
T Consensus       344 h~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~  420 (903)
T PRK04841        344 HRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ  420 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence            34445556677887777765443311   110 11122223445567888877777766532111112222334455566


Q ss_pred             hcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHH
Q 006012          347 KMGYLKDAEFVVSEMERSGV------LPD--EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS----FIYSRILAG  414 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~ll~~  414 (664)
                      ..|+++++...+....+.--      .+.  ......+...+...|++++|...+++........+.    ...+.+...
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            78999999999887754210      111  122223344566789999999999987653212222    244556667


Q ss_pred             HHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHH
Q 006012          415 YRDRGEWQRTFQVLKEMKSS----GV-EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----GIE--P-DTITWNTLI  482 (664)
Q Consensus       415 ~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li  482 (664)
                      +...|++++|...+.+....    |. .....++..+...+...|++++|...+++....    +..  + ....+..+.
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            78899999999999887642    21 111234555667788899999999998876642    211  1 223345556


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHH
Q 006012          483 DCHFKCGRYDRAEELFEEMQER--GYFP--CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTY-----TTLV  552 (664)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~li  552 (664)
                      ..+...|++++|...+.+....  ...+  ....+..+...+...|+.++|.+.+.++...... .....+     ...+
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  660 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL  660 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence            6677789999999999887553  1112  2334445666778899999999999888542111 111111     1122


Q ss_pred             HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC
Q 006012          553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS---NLALNSLINAFGEDQRDAEAFAVLQYMKEN----GLKPD  625 (664)
Q Consensus       553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~  625 (664)
                      ..+...|+.+.|.+.+...           ........   ...+..+..++...|++++|...+++..+.    |...+
T Consensus       661 ~~~~~~g~~~~A~~~l~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~  729 (903)
T PRK04841        661 IYWQMTGDKEAAANWLRQA-----------PKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD  729 (903)
T ss_pred             HHHHHCCCHHHHHHHHHhc-----------CCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence            4445577888777664321           11100001   112456777888899999999999988752    33332


Q ss_pred             -HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          626 -VVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       626 -~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                       ..++..+..++.+.|+.++|.+.++
T Consensus       730 ~a~~~~~la~a~~~~G~~~~A~~~L~  755 (903)
T PRK04841        730 LNRNLILLNQLYWQQGRKSEAQRVLL  755 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             2467778889999999999988877

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.71  E-value=0.00023  Score=77.21  Aligned_cols=493  Identities=13%  Similarity=0.064  Sum_probs=227.4

Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMS  217 (664)
Q Consensus       142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  217 (664)
                      +...++..|-+..+..  +.....|..|.+.|....+...|...    .+...-+..++-.+...|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            3445555555555544  34455677777777766555555554    33444556677788888888888888887733


Q ss_pred             HHHHcCCCCChhhHHHHHHH--HHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006012          218 KMRQDGYHCDFINYSLVIQS--LTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG  295 (664)
Q Consensus       218 ~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g  295 (664)
                      .--+.. +--...++.+-.+  +...++...++  .-|+...+.. +.|...|..+..+|..+|.+..|+++|.++... 
T Consensus       551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV--~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-  625 (1238)
T KOG1127|consen  551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAV--CEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-  625 (1238)
T ss_pred             HHhhhc-hHHHHHhhhhhccccccCccchhhHH--HHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence            222211 0011111111111  12222222221  2233333222 457778888888888888888888888877764 


Q ss_pred             CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHH
Q 006012          296 LSPKT-ATYAAVITALSNSGRTIEAEAVFEELKESG------LKPRTKAYNALLKGYVKMGY-------LKDAEFVVSEM  361 (664)
Q Consensus       296 ~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m  361 (664)
                       .|+. ..---..-..+..|.+.+|...+.......      ..--..++-.+...+...|-       ++++.+.|.-.
T Consensus       626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~  704 (1238)
T KOG1127|consen  626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS  704 (1238)
T ss_pred             -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence             3432 222223334566788888888777765421      00011122222222222222       22233333222


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHH------HHHHH-HHHHHhcCC--------------------CCCHHHHHHHHHH
Q 006012          362 ERSGVLPDEHTYSLLIDAYANAGRWE------SARIV-LKEMEVSHA--------------------KPNSFIYSRILAG  414 (664)
Q Consensus       362 ~~~g~~~~~~~~~~li~~~~~~g~~~------~A~~l-~~~m~~~~~--------------------~~~~~~~~~ll~~  414 (664)
                      ......-+...|-.+-+++.-.-..+      ....+ +.+....+.                    ..+..+|..+...
T Consensus       705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin  784 (1238)
T KOG1127|consen  705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN  784 (1238)
T ss_pred             HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence            22221112222222221111000000      00000 001111110                    1112233333333


Q ss_pred             HHh----cC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          415 YRD----RG----EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF  486 (664)
Q Consensus       415 ~~~----~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  486 (664)
                      |.+    .+    +...|+..+.+..+.. ..+..+|++|.-. ...|.+.-+...|-.-.... +....+|..+.-.+.
T Consensus       785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l  861 (1238)
T KOG1127|consen  785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL  861 (1238)
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence            322    11    2234555555544432 2344555555443 44455555555444433222 334556666666677


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChH
Q 006012          487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA----QGLLPNVVTYTTLVDIYGQSGRFD  562 (664)
Q Consensus       487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~  562 (664)
                      +..+++.|...|...+.-. +.+...|..........|+.-+...+|..--.    .|--++..-|..........|+.+
T Consensus       862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e  940 (1238)
T KOG1127|consen  862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE  940 (1238)
T ss_pred             ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence            7777777777777776654 44555555555555566666666666654211    133344444444444444555555


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHH----HHHHHHH
Q 006012          563 DAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYT----TLMKALI  637 (664)
Q Consensus       563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~----~l~~a~~  637 (664)
                      +-+...+......+ ..++... |..-+...|.+.....-+.+.+++|.++..+.+. ...+-|...|+    .+.+.++
T Consensus       941 ~~I~t~~ki~sAs~-al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~l 1018 (1238)
T KOG1127|consen  941 ESINTARKISSASL-ALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLEL 1018 (1238)
T ss_pred             HHHHHhhhhhhhHH-HHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence            54443332211111 1111111 2222345666666666666666666666555432 00122333333    3444555


Q ss_pred             hcCCHhHHHHH
Q 006012          638 RVDKFHKVFSS  648 (664)
Q Consensus       638 ~~g~~~~A~~~  648 (664)
                      ..|.++.|...
T Consensus      1019 slgefe~A~~a 1029 (1238)
T KOG1127|consen 1019 SLGEFESAKKA 1029 (1238)
T ss_pred             hhcchhhHhhh
Confidence            56666666543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=0.0001  Score=74.76  Aligned_cols=394  Identities=16%  Similarity=0.116  Sum_probs=230.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 006012          201 SACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELD-GQLLNDVIVGFAKAG  279 (664)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d-~~~~~~li~~~~~~g  279 (664)
                      .+.+..|+++.|+..|-+..... ++|.+.|+--..++++.|++..++    -+.-....+.|+ ..-|+....++.-.|
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al----~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKAL----KDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHH----HHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            45677899999999999988876 558888988888999999885433    222222334455 568888999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHHc---CCCCCHHHHHHHHHHHHhc-----
Q 006012          280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEA---EAVFEELKES---GLKPRTKAYNALLKGYVKM-----  348 (664)
Q Consensus       280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~l~~~m~~~---~~~p~~~~~~~li~~~~~~-----  348 (664)
                      ++++|+..|.+-++.. +.+...++-+.+++.......+.   -.++..+...   ........|..++..+-+.     
T Consensus        85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            9999999999887753 34566777777776211100000   0011111100   0000112333333332221     


Q ss_pred             -----CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHH
Q 006012          349 -----GYLKDAEFVVSEM-----ERSG-------VLP------------D----------EHTYSLLIDAYANAGRWESA  389 (664)
Q Consensus       349 -----g~~~~a~~~~~~m-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A  389 (664)
                           .++..+...+...     ...|       ..|            |          ..-...+.++.-+..+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                 0111111111100     0000       011            0          11234456666667777777


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHhccCCHHHHHHH
Q 006012          390 RIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYN-------VMIDTFGKYNCLHHAMAA  462 (664)
Q Consensus       390 ~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------~li~~~~~~g~~~~A~~~  462 (664)
                      ++-+.......  .+..-++....+|...|.+.++........+.|-. ...-|+       .+..+|.+.++++.+...
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            77777776654  45555666667777888777777776666555421 122222       233355666777778877


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          463 FDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRLLGNMRAQGL  541 (664)
Q Consensus       463 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  541 (664)
                      |.+.+.....|+.         ..+....+++.+..+...-.+  |.. .-...-.+.+.+.|++..|...+.+++..+.
T Consensus       321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P  389 (539)
T KOG0548|consen  321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP  389 (539)
T ss_pred             HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence            7776654333322         223344455555444443322  221 1122225566788999999999999999863


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          542 LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                       -|...|....-+|.++|.+..|+.-.+..++             +.|+. ..|.-=..++....++++|.+.|++.++ 
T Consensus       390 -~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale-  454 (539)
T KOG0548|consen  390 -EDARLYSNRAACYLKLGEYPEALKDAKKCIE-------------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE-  454 (539)
T ss_pred             -chhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence             3789999999999999999988875332221             13443 2455556667777889999999998888 


Q ss_pred             CCCCCHHHHH
Q 006012          621 GLKPDVVTYT  630 (664)
Q Consensus       621 g~~p~~~~~~  630 (664)
                       ..|+..-+.
T Consensus       455 -~dp~~~e~~  463 (539)
T KOG0548|consen  455 -LDPSNAEAI  463 (539)
T ss_pred             -cCchhHHHH
Confidence             446544333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.70  E-value=0.0002  Score=68.46  Aligned_cols=315  Identities=14%  Similarity=0.092  Sum_probs=162.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY-NAL  341 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~-~~l  341 (664)
                      .|+.-.--+...+...|++..|+.-|...++.+ +.+-.++.--...|...|+...|+.-+...++.  +||-..- -.-
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR  112 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence            444455556777888899999999998887642 222334444556788889988888888888764  5663221 112


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 006012          342 LKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYS------------LLIDAYANAGRWESARIVLKEMEVSHAKPNSFI  407 (664)
Q Consensus       342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~  407 (664)
                      ...+.+.|.+++|..-|+..++.....+  ...+.            ..+..+...|+...|+.....+.+.. +.+...
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l  191 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL  191 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence            3356788999999999999887643211  11111            11222333444444444444444321 233344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK  487 (664)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  487 (664)
                      |..-..+|...|+...|+.-++...+.. ..+..++--+-..+...|+.+.++...++-++.  .||....-..      
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~------  262 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF------  262 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH------
Confidence            4444445555555555544444433322 223333334444444445555544444444443  2332211100      


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHH
Q 006012          488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNV---VTYTTLVDIYGQSGRFDDA  564 (664)
Q Consensus       488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A  564 (664)
                      -..+.+..+.++.|                ......++|.++.+-.+...+.......   ..+..+-.++...|++.+|
T Consensus       263 YKklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA  326 (504)
T KOG0624|consen  263 YKKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA  326 (504)
T ss_pred             HHHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence            00111111111111                1223445556666666655554333122   2233444556666677766


Q ss_pred             HHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          565 IECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       565 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ++.....           .+  +.|| ..++.--..+|.-...+|+|+.-|+.+.+
T Consensus       327 iqqC~ev-----------L~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  327 IQQCKEV-----------LD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHH-----------Hh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            6543211           11  3444 44666666677666777777777777766

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.68  E-value=0.00033  Score=76.05  Aligned_cols=145  Identities=11%  Similarity=0.036  Sum_probs=80.6

Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 006012          142 SIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTP--LTYNALISACARNDDLEKALNL  215 (664)
Q Consensus       142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~  215 (664)
                      +...|...|..+-+.+  +.+..........|+....++.|...    .+..+.-.  ..|.-..-.|...++..+|+.-
T Consensus       507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~  584 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE  584 (1238)
T ss_pred             HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence            5566777777776665  55667778888888888888888765    11111111  1233333445566666666666


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          216 MSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQ  292 (664)
Q Consensus       216 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~  292 (664)
                      |+...+.. +-|...|..+..+|.+.|+...++  ++|......+ +.+...---...+-+..|++.+|+..++++.
T Consensus       585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~Al--KvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHAL--KVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHhcCC-chhHHHHHHHHHHHHhcCceehHH--HhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            66666543 334456666666666666664433  6665544322 1111111112223445566666666665544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.65  E-value=0.00029  Score=67.43  Aligned_cols=324  Identities=13%  Similarity=0.079  Sum_probs=212.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY-SLLI  377 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li  377 (664)
                      ++.-..-+...+...|++..|+.-|...++.+. -+-.++-.-...|...|+-.-|+.-+...++.  +||-..- ---.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg  113 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence            444455677788889999999999998886421 12223333345788888888888888888775  5664322 1223


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006012          378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLH  457 (664)
Q Consensus       378 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  457 (664)
                      ..+.+.|.+++|..=|+...+...  +..+   ...++.+.-..++-+.+                ...+..+...|+..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~  172 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQ  172 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchh
Confidence            457789999999999999887642  2111   11222222222222221                22334455678888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          458 HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR  537 (664)
Q Consensus       458 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  537 (664)
                      .|+.....+++.. +.|...|..-..+|...|.+.+|+.-++...+.. ..+..++.-+-..+...|+.+.++..+++-.
T Consensus       173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL  250 (504)
T KOG0624|consen  173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL  250 (504)
T ss_pred             hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            8888888888765 5688888888889999999999988887776654 4566777777888888899998888888887


Q ss_pred             HCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHh-hhHHHHHHHHHHHHHCCCCCC--HH---HHHHHHHHHHhcCCHHHH
Q 006012          538 AQGLLPNVVTYTTLVDIYGQ-SGRFDDAIECLE-GLSDQAVNAFRVMRTDGLKPS--NL---ALNSLINAFGEDQRDAEA  610 (664)
Q Consensus       538 ~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~-~~~~~a~~~~~~m~~~g~~p~--~~---~~~~li~~~~~~g~~~~A  610 (664)
                      +.  .||...+-..-.-+-+ ...++.|.+.++ +...++++..+...+.  .|.  .+   .+..+-.++...|++.+|
T Consensus       251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eA  326 (504)
T KOG0624|consen  251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEA  326 (504)
T ss_pred             cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHH
Confidence            74  5665433222111111 111222222222 3334444445555543  333  22   344566777888999999


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 006012          611 FAVLQYMKENGLKPD-VVTYTTLMKALIRVDKFHKVFSSYLFFNI  654 (664)
Q Consensus       611 ~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~~  654 (664)
                      ++...+.++  +.|| ..++.--..+|.-...++.|+.-|+.-..
T Consensus       327 iqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  327 IQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            999999998  5665 78898899999999999999999884433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.65  E-value=0.00018  Score=84.30  Aligned_cols=340  Identities=14%  Similarity=0.044  Sum_probs=211.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHH
Q 006012          275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL------KPR--TKAYNALLKGYV  346 (664)
Q Consensus       275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------~p~--~~~~~~li~~~~  346 (664)
                      ....|+++.+.++++.+.......+..........+...|++++|...+......--      .+.  ......+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            344566666666665442111111222233445566788999999999988754211      111  112223344566


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHh
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGRWESARIVLKEMEVSHA---KP--NSFIYSRILAGYRD  417 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~~--~~~~~~~ll~~~~~  417 (664)
                      ..|++++|...+++..+.-...+.    ...+.+...+...|++++|...+++......   .+  ...++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            889999999999988763212222    3445666777889999999999988764311   11  12345566777889


Q ss_pred             cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 006012          418 RGEWQRTFQVLKEMKS----SGVE--P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--IEP--DTITWNTLIDCHF  486 (664)
Q Consensus       418 ~g~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~  486 (664)
                      .|++++|...+++...    .+..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            9999999999887654    2211  1 22344555666777899999999998876431  112  2334555666788


Q ss_pred             HcCCHHHHHHHHHHHHHC--CCCCCHHH---H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 006012          487 KCGRYDRAEELFEEMQER--GYFPCTTT---Y-NIMINLLGEQERWEDVKRLLGNMRAQGLLPN---VVTYTTLVDIYGQ  557 (664)
Q Consensus       487 ~~g~~~~A~~~~~~m~~~--~~~p~~~t---~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~  557 (664)
                      ..|++++|.+.+.+....  ........   . ...+..+...|+.+.|.+.+...........   ...+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            899999999999887542  11111111   0 1122444568899999999877654221111   1124567778899


Q ss_pred             cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          558 SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENG  621 (664)
Q Consensus       558 ~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  621 (664)
                      .|++++|...++....    ..   ...|..++ ..+...+..++...|+.++|...+.++.+..
T Consensus       704 ~g~~~~A~~~l~~al~----~~---~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        704 LGQFDEAEIILEELNE----NA---RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             cCCHHHHHHHHHHHHH----HH---HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999999987653332    22   22233332 2356777888999999999999999998743

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.65  E-value=3.4e-06  Score=82.92  Aligned_cols=137  Identities=15%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 006012          414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CG  489 (664)
Q Consensus       414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g  489 (664)
                      .+...|++++|++++...      .+.......+..|.+.++++.|.+.++.|.+..  .|.. ...+..++..    .+
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence            344455555555544321      344455555566666666666666666665432  2322 2223333222    22


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006012          490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF  561 (664)
Q Consensus       490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  561 (664)
                      .+.+|..+|+++.++ ..++..+.+.+..+....|++++|.+++.+....+.. ++.+...++-+....|+.
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-T
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCC
Confidence            466666666666544 3456666666666666667777776666666554322 455555566666666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=4.9e-06  Score=84.84  Aligned_cols=262  Identities=18%  Similarity=0.132  Sum_probs=157.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWES  388 (664)
Q Consensus       309 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  388 (664)
                      -+.+.|++.+|.-+|+..++.... +...|.-|.......++-..|+..+++..+.... |....-.|.-.|...|.-.+
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence            344555566666666655554322 4555555555555555555566666665554332 44555555555555555555


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-
Q 006012          389 ARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML-  467 (664)
Q Consensus       389 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-  467 (664)
                      |.+.++..+....+     |..+..+ ...+++.              .+         ..+.....+....++|-++. 
T Consensus       372 Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~--------------~~---------~s~~~~~~l~~i~~~fLeaa~  422 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPK-----YVHLVSA-GENEDFE--------------NT---------KSFLDSSHLAHIQELFLEAAR  422 (579)
T ss_pred             HHHHHHHHHHhCcc-----chhcccc-Ccccccc--------------CC---------cCCCCHHHHHHHHHHHHHHHH
Confidence            65555555443211     0000000 0000000              00         11111122334445554444 


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 006012          468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VV  546 (664)
Q Consensus       468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~  546 (664)
                      ..+..+|......|.-.|--.|.+++|.+.|+.++... +-|..+||.|...++...+.++|...|++.++  ++|. +.
T Consensus       423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR  499 (579)
T KOG1125|consen  423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR  499 (579)
T ss_pred             hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence            44445778888888888889999999999999998876 67889999999999999999999999999988  4666 34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD------GLKPSNLALNSLINAFGEDQRDAEAFA  612 (664)
Q Consensus       547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~  612 (664)
                      +...|.-+|...|.+++|.+.|-    .|+.    |..+      +..++...|..|=.++.-.++.|-+.+
T Consensus       500 ~RyNlgIS~mNlG~ykEA~~hlL----~AL~----mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  500 VRYNLGISCMNLGAYKEAVKHLL----EALS----MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             eehhhhhhhhhhhhHHHHHHHHH----HHHH----hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            56667888999999999988653    2222    2222      112234567777677776777665444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.59  E-value=0.0012  Score=67.25  Aligned_cols=409  Identities=12%  Similarity=0.107  Sum_probs=244.4

Q ss_pred             HHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 006012          154 QKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFI  229 (664)
Q Consensus       154 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  229 (664)
                      ++.+  |.+...|+.||.-+... ..++++..    ....+-.+..|..-|..-.+.++++....+|.+....-  .+..
T Consensus        13 ie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlD   87 (656)
T KOG1914|consen   13 IEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLD   87 (656)
T ss_pred             HhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHh
Confidence            3444  66778899999888776 78887766    33445567899999999999999999999999987653  4555


Q ss_pred             hHHHHHHHHHhc-CCCCh--HHHHHHHHH-HHhCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCC
Q 006012          230 NYSLVIQSLTRT-NKIDS--SLLQKLYKE-IECDKIEL-DGQLLNDVIVG---------FAKAGDASKAMRFLGMAQGVG  295 (664)
Q Consensus       230 ~~~~ll~~~~~~-g~~~~--~~~~~l~~~-~~~~~~~~-d~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~g  295 (664)
                      .|..-|.-..+. ++...  +...+.|+. +.+.|+++ .-.+|+..+..         |....+.+...++++++...-
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP  167 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP  167 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence            666666433332 22221  111233443 33345433 23345555543         333445556677777776532


Q ss_pred             CC------CCHHHHHHHHHHHH-------hcCChHHHHHHHHHHHH--cCCCCCHH---------------HHHHHHHHH
Q 006012          296 LS------PKTATYAAVITALS-------NSGRTIEAEAVFEELKE--SGLKPRTK---------------AYNALLKGY  345 (664)
Q Consensus       296 ~~------~~~~~~~~li~~~~-------~~g~~~~A~~l~~~m~~--~~~~p~~~---------------~~~~li~~~  345 (664)
                      +.      .|-..|..-|+...       +...+..|.++++++..  +|...+..               .|..+|..-
T Consensus       168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE  247 (656)
T KOG1914|consen  168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE  247 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence            11      11122222222221       22346677777777653  33322211               244444432


Q ss_pred             HhcCCH--------HHHHHHHHHHH-HCCCCCCHHHHHH-----HHHHHHHcCC-------HHHHHHHHHHHHhcCCCCC
Q 006012          346 VKMGYL--------KDAEFVVSEME-RSGVLPDEHTYSL-----LIDAYANAGR-------WESARIVLKEMEVSHAKPN  404 (664)
Q Consensus       346 ~~~g~~--------~~a~~~~~~m~-~~g~~~~~~~~~~-----li~~~~~~g~-------~~~A~~l~~~m~~~~~~~~  404 (664)
                      -..+--        ....-++++.. -.+..|++.-..+     .-+.+...|+       .+++..+++.....-...+
T Consensus       248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~  327 (656)
T KOG1914|consen  248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN  327 (656)
T ss_pred             hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            222210        11222222222 2233333211111     1122333343       4566677776654433334


Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 006012          405 SFIYSRILAGYRDRG---EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DTITWNT  480 (664)
Q Consensus       405 ~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~  480 (664)
                      ..+|..+..---..-   ..+.....++++...-..--..+|..+++...+..-+..|..+|.+..+.+..+ ++..+++
T Consensus       328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A  407 (656)
T KOG1914|consen  328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA  407 (656)
T ss_pred             HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence            444444433221111   355666667776654323334567778888888888999999999999887666 7888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 006012          481 LIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN--VVTYTTLVDIYGQS  558 (664)
Q Consensus       481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~  558 (664)
                      +|.-|| .++.+-|.++|+--+++- ..+..--...+.-+...++-..+..+|++.+..++.|+  ..+|..+++-=..-
T Consensus       408 ~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v  485 (656)
T KOG1914|consen  408 LMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV  485 (656)
T ss_pred             HHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence            999887 578899999999866652 34455556777888889999999999999998866555  57899999999999


Q ss_pred             CChHHHHHHHh
Q 006012          559 GRFDDAIECLE  569 (664)
Q Consensus       559 g~~~~A~~~~~  569 (664)
                      |++..++++-+
T Consensus       486 GdL~si~~lek  496 (656)
T KOG1914|consen  486 GDLNSILKLEK  496 (656)
T ss_pred             ccHHHHHHHHH
Confidence            99998887644

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=0.0017  Score=70.70  Aligned_cols=320  Identities=15%  Similarity=0.168  Sum_probs=203.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH
Q 006012          191 LTPLTYNALISACARNDDLEKALNLMSKMRQDG--YHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL  268 (664)
Q Consensus       191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~  268 (664)
                      .|+..-..-+.++...+-+.+-+++++++.-..  +.-+.-.-+.++-...+..+.      ++.+.+.+.    |-.--
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~t------rVm~YI~rL----dnyDa 1051 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRT------RVMEYINRL----DNYDA 1051 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChH------HHHHHHHHh----ccCCc
Confidence            455566677788888888888888888877532  111111223333333332221      333333321    11111


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      -.+...+...+-+++|..+|++..     .+....+.||.-   -+.++.|.+.-++..      ....|..+..+-.+.
T Consensus      1052 ~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred             hhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence            224455566677888888887653     344454554432   344555555444332      346788888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVL  428 (664)
Q Consensus       349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  428 (664)
                      |.+.+|.+-|-+.      -|+..|..+++...+.|.+++-.+.+...++....|..  =+.++-+|++.++..+..++.
T Consensus      1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh
Confidence            8888877666443      26777888888888888888888887776665544443  356778888888776655543


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012          429 KEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP  508 (664)
Q Consensus       429 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  508 (664)
                      .       -|+..-...+.+-|...|.++.|.-+|...         ..|..|...+...|++..|.+.-++.      .
T Consensus      1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------n 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------N 1247 (1666)
T ss_pred             c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------c
Confidence            2       477777777788888888888887777544         34777777778888888877765543      3


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       509 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      +..||-.+-.+|...+.+.-|     +|...++.....-..-++..|...|-+++-+.+++
T Consensus      1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred             chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence            566888888888777665544     34444445556666778888888888887777665

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.56  E-value=3.4e-06  Score=82.97  Aligned_cols=249  Identities=16%  Similarity=0.122  Sum_probs=161.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA  354 (664)
Q Consensus       275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  354 (664)
                      +.-.|++..++.-.+ .....-..+......+.+++...|+++.++   .++.... .|.......+...+...++-+.+
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence            445688888876555 222221223445666778888888876544   3433333 56666665555544443455555


Q ss_pred             HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          355 EFVVSEMERSGVL-PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       355 ~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                      ..-+++....... .+..........+...|++++|++++...      .+.......+..|.+.++++.|.+.++.|.+
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555544433322 23333333335566789999998888643      4667777888999999999999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012          434 SGVEPDTHFYNVMIDTFG----KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC  509 (664)
Q Consensus       434 ~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  509 (664)
                      .+  .| .+...+..++.    ..+.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+ +-+
T Consensus       160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~  234 (290)
T PF04733_consen  160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND  234 (290)
T ss_dssp             CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred             cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence            53  34 33444444443    234689999999998654 46788899999999999999999999999988776 456


Q ss_pred             HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 006012          510 TTTYNIMINLLGEQERW-EDVKRLLGNMRAQ  539 (664)
Q Consensus       510 ~~t~~~ll~~~~~~g~~-~~a~~~~~~m~~~  539 (664)
                      ..+...++.+....|+. +.+.+.+.++...
T Consensus       235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            77777788777888887 6788888888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN02789 farnesyltranstransferase

Probab=98.53  E-value=0.00018  Score=71.89  Aligned_cols=212  Identities=10%  Similarity=0.038  Sum_probs=127.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      .+-..+...++.++|+.+.+++++.. +-+..+|+....++...| +++++++.++++.+.+.+ +..+|+.-...+.+.
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l  119 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL  119 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence            33344555677788888888877653 334556776666666666 567888888887776544 555666555555555


Q ss_pred             CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CC---
Q 006012          349 GY--LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR---GE---  420 (664)
Q Consensus       349 g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~---g~---  420 (664)
                      |+  .+++..+++.+.+...+ |..+|+.....+.+.|+++++++.++++++.+. .|...|+.....+.+.   |.   
T Consensus       120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~  197 (320)
T PLN02789        120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA  197 (320)
T ss_pred             CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence            54  25667777777766544 777787777777777888888888888877653 3455555555444433   21   


Q ss_pred             -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          421 -WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY----NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK  487 (664)
Q Consensus       421 -~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  487 (664)
                       .++.++...+++... +-+...|+-+...+...    +...+|.+.+.+..+.+ ..+......|++.|+.
T Consensus       198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence             234455554544432 34455555555555442    23344555555554433 2344455555555553

>PF12854 PPR_1: PPR repeat

Probab=98.52  E-value=1.3e-07  Score=59.19  Aligned_cols=34  Identities=32%  Similarity=0.562  Sum_probs=29.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          585 DGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       585 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  618 (664)
                      +|+.||..||++||++|++.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3778888899999999999999999998888873

>PF12854 PPR_1: PPR repeat

Probab=98.52  E-value=1.4e-07  Score=59.00  Aligned_cols=32  Identities=63%  Similarity=0.914  Sum_probs=20.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          470 GIEPDTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       470 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      |+.||..+||+||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666655

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=0.00028  Score=66.16  Aligned_cols=319  Identities=14%  Similarity=0.086  Sum_probs=176.5

Q ss_pred             HHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhc
Q 006012          167 SILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSL-VIQSLTRT  241 (664)
Q Consensus       167 ~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~  241 (664)
                      ++.+..+.+..++.+|+.+    .++.+++......|..+|.+..++..|-+.++++...  .|...-|.. -.+++.+.
T Consensus        14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence            3444445566677777766    3345556677777778888888888888888887764  354444432 22344445


Q ss_pred             CCCChHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 006012          242 NKIDSSLLQKLYKEIECDKIELDGQLLNDVI----VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTI  317 (664)
Q Consensus       242 g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  317 (664)
                      +.+.+  +.++...|...     ....+..+    ......+++..+..+.++....   .+..+.+.......+.|+++
T Consensus        92 ~i~AD--ALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   92 CIYAD--ALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             cccHH--HHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence            55533  33555444432     11111111    1223456666777776665432   24555556666667788888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH--------------
Q 006012          318 EAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-------------PDE--------------  370 (664)
Q Consensus       318 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------~~~--------------  370 (664)
                      +|.+-|+...+.+---....||..+..| +.|+.+.|.+...+++++|++             ||+              
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence            8888888777643322456676555443 556778888888877776642             111              


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          371 -HTYSLLIDAYANAGRWESARIVLKEMEVS-HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID  448 (664)
Q Consensus       371 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  448 (664)
                       ..+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.- ..+++.+...-+.-+.+.. +-...|+..++-
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl  318 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL  318 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence             11222333445677888888777777432 2345566655443222 1233444444444444443 345678888888


Q ss_pred             HHhccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 006012          449 TFGKYNCLHHAMAAFDRMLSEGI-EPDTITWNTLIDCHFK-CGRYDRAEELFEEM  501 (664)
Q Consensus       449 ~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m  501 (664)
                      .||+..-++-|-.++.+-...-. -.+...|+ |++++.. .-..++|++-++.+
T Consensus       319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence            88888888877777654321110 11223333 3333332 33456666555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=3e-05  Score=79.27  Aligned_cols=261  Identities=15%  Similarity=0.103  Sum_probs=176.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK  352 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  352 (664)
                      .-+.+.|++.+|.-.|+..++.+ +-+...|..|...-...++-..|+..+++..+.... |....-.|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            34678899999999999998875 557899999999999999999999999999886433 6788888999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 006012          353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM-  431 (664)
Q Consensus       353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m-  431 (664)
                      +|...++.-++..++     |..+... ...++.+.-          +-.++...             +....++|-++ 
T Consensus       371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa  421 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAA  421 (579)
T ss_pred             HHHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHH
Confidence            999999998875432     1111110 001111100          00112211             22233333333 


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 006012          432 KSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC-T  510 (664)
Q Consensus       432 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~  510 (664)
                      ...+..+|..+...|.-.|.-.|++++|.+.|+..+... +-|...||-|...++...+.++|+.-|++.++..  |+ +
T Consensus       422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yV  498 (579)
T KOG1125|consen  422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYV  498 (579)
T ss_pred             HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCee
Confidence            334444677777777777788888888888888877654 3467788888888888888888888888887753  33 2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          511 TTYNIMINLLGEQERWEDVKRLLGNMRAQ---------GLLPNVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---------~~~p~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      .....|.-.|...|.+++|.+.|-..+..         +..++..+|.+|=.++...++.|.+.++
T Consensus       499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            34444566778888888887777655432         1112345676666666667766655444

>PLN02789 farnesyltranstransferase

Probab=98.48  E-value=0.0002  Score=71.52  Aligned_cols=207  Identities=8%  Similarity=0.012  Sum_probs=145.1

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--
Q 006012          310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW--  386 (664)
Q Consensus       310 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--  386 (664)
                      +...++.++|+.++.++++.+.. +..+|+.--.++...| ++++++..++++.+...+ +..+|+.....+.+.|+.  
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence            34567889999999999886432 4556776666777777 679999999999887655 666787766666666653  


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----HHHH
Q 006012          387 ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY---NC----LHHA  459 (664)
Q Consensus       387 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~----~~~A  459 (664)
                      ++++.+++++.+.+ +-|..+|+....++...|+++++++.++++++.+ ..+..+|+.....+.+.   |.    .++.
T Consensus       125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHH
Confidence            67788888888765 4678889888888888999999999999998876 44556666655554443   22    2455


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          460 MAAFDRMLSEGIEPDTITWNTLIDCHFKC----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE  522 (664)
Q Consensus       460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~  522 (664)
                      ......++... +-+...|+-+...+...    ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus       203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            56665665543 34667777777777663    33456777777766644 4456667777777765

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.47  E-value=0.00012  Score=76.98  Aligned_cols=218  Identities=14%  Similarity=0.131  Sum_probs=167.6

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006012          333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL  412 (664)
Q Consensus       333 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll  412 (664)
                      |--..-..+...+...|-...|..+++++.         .|.-+|.+|+..|+..+|..+..+..+  -+|+...|..+.
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG  464 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG  464 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence            333344566777888888899998888764         466678889999999999888888776  368888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012          413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD  492 (664)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  492 (664)
                      +......-+++|+++.+....+       .-..+.......++++++.+.|+.-.+.. +.-..+|-.+..+..+++++.
T Consensus       465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence            8888888888888888774322       11122222334688899999988877654 345677888888888999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhh
Q 006012          493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGL  571 (664)
Q Consensus       493 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  571 (664)
                      .|.+.|.....-. +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+..+|...+..-.+.|.+++|++.+..+
T Consensus       537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            9999999887765 5567889999999999999999999999999887 346677777788888999999998876643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.47  E-value=7.6e-05  Score=83.45  Aligned_cols=227  Identities=12%  Similarity=0.060  Sum_probs=177.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          402 KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS-GVE---PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT  477 (664)
Q Consensus       402 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  477 (664)
                      +.+...|-..|......++.++|.++.++.... +++   --...|.++++.-...|.-+...++|++..+.  .-....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            455667888888888889999999998887653 222   22357778888778888889999999999874  234567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTYTTLVDIYG  556 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~  556 (664)
                      |..|...|.+.+.+++|-++++.|.++- .-....|...+..+.++.+-+.|..++.++.+.-.+ -......-.++.-.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            8999999999999999999999999873 356788999999999999999999999999875222 13456667778888


Q ss_pred             hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 006012          557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDV--VTYTTLMK  634 (664)
Q Consensus       557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~  634 (664)
                      +.|+.+.++.+|+|.+..            .+-....|+.+++.-.++|+.+.+..+|++....++.|-.  ..|...+.
T Consensus      1612 k~GDaeRGRtlfEgll~a------------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA------------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred             hcCCchhhHHHHHHHHhh------------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence            999999999998866532            1224568999999999999999999999999998888753  56666666


Q ss_pred             HHHhcCCHh
Q 006012          635 ALIRVDKFH  643 (664)
Q Consensus       635 a~~~~g~~~  643 (664)
                      .=-..|+-+
T Consensus      1680 yEk~~Gde~ 1688 (1710)
T KOG1070|consen 1680 YEKSHGDEK 1688 (1710)
T ss_pred             HHHhcCchh
Confidence            444445543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.44  E-value=0.00014  Score=81.47  Aligned_cols=205  Identities=15%  Similarity=0.109  Sum_probs=123.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-----RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY  373 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  373 (664)
                      +...|...|....+.++.++|++++++.+.. +.+     -.-.|.++++.-..-|.-+...++|+++.+.-  -....|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence            3556777777777777777777777776542 211     12345666666666666666777777766541  123456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhc
Q 006012          374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPDTHFYNVMIDTFGK  452 (664)
Q Consensus       374 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~  452 (664)
                      ..|...|.+.+..++|.++|+.|.+.-- -....|...+..+.+..+-+.|..++....+.-. .-......-.+..-.+
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            6677777777777777777777765432 4455666666666666666666666666554310 1123334444445556


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006012          453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP  508 (664)
Q Consensus       453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  508 (664)
                      .|+.+.+..+|+..+... +.-...|+..|++-.++|+.+.+..+|++....++.|
T Consensus      1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            666666666666666442 2234556666666666666666666666666665444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.41  E-value=3.3e-05  Score=80.98  Aligned_cols=240  Identities=14%  Similarity=0.119  Sum_probs=187.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL  376 (664)
Q Consensus       297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  376 (664)
                      +|--..-..+...+...|-..+|..+|+++.         .|..+|.+|+..|+..+|..+..+..++  +||...|..+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L  463 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL  463 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence            4444455667788899999999999998864         4667899999999999999999988874  6899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012          377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL  456 (664)
Q Consensus       377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  456 (664)
                      .+.....--+++|+++.+.....       .-..+.....+.+++.++.+.|+.-.+.. +.-..+|-.+..+..+.+++
T Consensus       464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence            98888777889999998876432       11122222344789999999998866553 45567888888888999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM  536 (664)
Q Consensus       457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m  536 (664)
                      +.|.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|...+-...+.|.+++|.+.+.++
T Consensus       536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            99999999888653 3456789999999999999999999999999988 445667777777889999999999999988


Q ss_pred             HHCC-CCCCHHHHHHHHHHHHh
Q 006012          537 RAQG-LLPNVVTYTTLVDIYGQ  557 (664)
Q Consensus       537 ~~~~-~~p~~~~~~~li~~~~~  557 (664)
                      .... ..-|..+...++..-.+
T Consensus       614 l~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  614 LDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             HHhhhhcccchhhHHHHHHHHh
Confidence            7641 12255555555555443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.34  E-value=0.00023  Score=79.10  Aligned_cols=221  Identities=11%  Similarity=0.049  Sum_probs=133.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C--------
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESG-L--------  331 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~--------  331 (664)
                      +.+...+..|+..|...+++++|.++.+...+.  .|+ ...|..+...+.+.++.+++.-+  .+...- .        
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            345667888888888889999999988876654  344 33444444567777776666555  332210 0        


Q ss_pred             ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006012          332 ---------KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK  402 (664)
Q Consensus       332 ---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~  402 (664)
                               .-+...+..+..+|-+.|+.+++..+++++.+..+. |+.+.|.+...|... ++++|.+++.+....   
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                     001234455666666666777777777776666533 566666666666666 666666666665432   


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 006012          403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GIEPDTITWNTL  481 (664)
Q Consensus       403 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l  481 (664)
                                  +...+++..+.++|.++....  |+               +++.-..+.+.+... |...-+.++-.+
T Consensus       179 ------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l  229 (906)
T PRK14720        179 ------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDL  229 (906)
T ss_pred             ------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHH
Confidence                        455556666666666665542  21               223333333344332 333445566667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      -..|-..++++++..+++.+++.. +-|.....-++..|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            777778888888888888888776 445556666666655

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.34  E-value=0.00066  Score=68.54  Aligned_cols=149  Identities=10%  Similarity=0.060  Sum_probs=117.8

Q ss_pred             HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWED  528 (664)
Q Consensus       449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~  528 (664)
                      .+...|++++|+..++.+.+.. +-|...+....+.+.+.++.++|.+.++.+.... +-.....-.+.+++.+.|+..+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence            3456688899999999988763 4566677777889999999999999999999875 2236667778889999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          529 VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDA  608 (664)
Q Consensus       529 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  608 (664)
                      |..+++...... +-|+..|..|..+|...|+..++...                             ...+|.-.|+++
T Consensus       393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-----------------------------~AE~~~~~G~~~  442 (484)
T COG4783         393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-----------------------------RAEGYALAGRLE  442 (484)
T ss_pred             HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-----------------------------HHHHHHhCCCHH
Confidence            999999988774 34889999999999999998877553                             234566689999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHH
Q 006012          609 EAFAVLQYMKENGLKPDVVTYT  630 (664)
Q Consensus       609 ~A~~~~~~m~~~g~~p~~~~~~  630 (664)
                      +|+..+....+. .+++..+|.
T Consensus       443 ~A~~~l~~A~~~-~~~~~~~~a  463 (484)
T COG4783         443 QAIIFLMRASQQ-VKLGFPDWA  463 (484)
T ss_pred             HHHHHHHHHHHh-ccCCcHHHH
Confidence            999999988875 355555544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.33  E-value=0.00012  Score=70.68  Aligned_cols=188  Identities=12%  Similarity=0.010  Sum_probs=126.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT--K  336 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~  336 (664)
                      +.....+-.+...+...|++++|...|+++.... +.+   ..++..+..++.+.|++++|...|+++.+.......  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3456677778888999999999999999987753 222   246788889999999999999999999875432111  2


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 006012          337 AYNALLKGYVKM--------GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY  408 (664)
Q Consensus       337 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~  408 (664)
                      ++..+..++...        |+.++|.+.++.+.+.... +...+..+.....    ....      ..        ...
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~  169 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKE  169 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence            455555555554        6788899999998876432 2223322211100    0000      00        011


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGV--EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE  469 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  469 (664)
                      ..+...+.+.|++++|...++...+...  +.....+..+..++.+.|+.++|..+++.+...
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2455667888888888888888776521  223567888888888899999998888887754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.0017  Score=60.42  Aligned_cols=134  Identities=15%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 006012          305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN--  382 (664)
Q Consensus       305 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--  382 (664)
                      .-...|+..|++++|++......      +....-.=+..+.+..+++.|.+.++.|.+..   +..|.+-|..++.+  
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la  183 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA  183 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence            33445566666666666555411      22222222334445555666666666666531   34445444444443  


Q ss_pred             --cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          383 --AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT  449 (664)
Q Consensus       383 --~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  449 (664)
                        .+.+..|.-+|++|.+. .+|+..+.+....++...|++++|..++++...+. ..+..+...++..
T Consensus       184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~  250 (299)
T KOG3081|consen  184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVL  250 (299)
T ss_pred             ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHH
Confidence              23455666666666442 34555666666666666666666666666655543 2334444333333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.25  E-value=0.00077  Score=75.08  Aligned_cols=170  Identities=11%  Similarity=0.071  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH
Q 006012          190 RLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQ-SLTRTNKIDSSLLQKLYKEIECDKIELDGQLL  268 (664)
Q Consensus       190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~  268 (664)
                      +.+...|..|+..+...+++++|+++.+...+.  .|+...+-.... .+.+.++.+.+..                  .
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~l------------------v   87 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNL------------------L   87 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhh------------------h
Confidence            345567777777777777777777777755554  455443322221 2223332222111                  1


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                       .++.......++.-...+...|...  .-+...+..+..+|-+.|+.++|.++|+++++... -|..+.|.+...|...
T Consensus        88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~  163 (906)
T PRK14720         88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE  163 (906)
T ss_pred             -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh
Confidence             3333333444443333333444432  23444666666777777777777777777776652 3666677777777766


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012          349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  399 (664)
                       ++++|.+++.+....               |...+++.++.+++.++...
T Consensus       164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence             777777766665543               44445555555555555543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.24  E-value=0.00019  Score=69.21  Aligned_cols=68  Identities=22%  Similarity=0.116  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLK-P-RTKAYNALLKGYVKMGYLKDAEFVVSEMERSG  365 (664)
Q Consensus       298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  365 (664)
                      .....+..+...+.+.|++++|...|+++...... | ....+..+..++.+.|++++|...++.+.+..
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH  100 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            34566777777777777777777777777664221 1 12355666677777777777777777776653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.21  E-value=0.00032  Score=65.11  Aligned_cols=124  Identities=13%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--HHHH
Q 006012          383 AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF-GKYNC--LHHA  459 (664)
Q Consensus       383 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~A  459 (664)
                      .++.+++...++...+.+ +.+...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            444455555555554443 4455566666666666666666666666665543 33455555555542 44454  3666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006012          460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT  510 (664)
Q Consensus       460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  510 (664)
                      .+++++..+.. +.+...+..+...+.+.|++++|+..|+++.+.. +|+.
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~  178 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV  178 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence            66666666554 2345556666666666666666666666666654 3433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.19  E-value=0.00036  Score=64.79  Aligned_cols=149  Identities=10%  Similarity=0.170  Sum_probs=115.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012          377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL  456 (664)
Q Consensus       377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  456 (664)
                      +..|...|+++.+....+.+....            ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~------------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL------------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc------------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence            456788888887655543332110            12223567777887887777654 67888999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          457 HHAMAAFDRMLSEGIEPDTITWNTLIDC-HFKCGR--YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLL  533 (664)
Q Consensus       457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~  533 (664)
                      ++|...|++..+.. +.+...+..+..+ |...|+  .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|
T Consensus        90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999875 3467778888776 467777  599999999999987 557888899999999999999999999


Q ss_pred             HHHHHCC
Q 006012          534 GNMRAQG  540 (664)
Q Consensus       534 ~~m~~~~  540 (664)
                      +++.+..
T Consensus       168 ~~aL~l~  174 (198)
T PRK10370        168 QKVLDLN  174 (198)
T ss_pred             HHHHhhC
Confidence            9998864

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.18  E-value=0.012  Score=60.32  Aligned_cols=140  Identities=11%  Similarity=0.159  Sum_probs=91.2

Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCC
Q 006012          184 LLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIEL  263 (664)
Q Consensus       184 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~  263 (664)
                      ...+..+-|..+|+.||+-+-.. -++++.+.+++|... ++-....|..-+..-.+.++++  .++++|.......  .
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe--~VEkLF~RCLvkv--L   84 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFE--SVEKLFSRCLVKV--L   84 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHH--h
Confidence            33556678999999999977655 999999999999875 3445567888888888888874  3578888877653  3


Q ss_pred             CHHHHHHHHHHHHH-cCCHHH----HHHHHHHHH-hCCCCCC-HHHHHHHHHHH---------HhcCChHHHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAK-AGDASK----AMRFLGMAQ-GVGLSPK-TATYAAVITAL---------SNSGRTIEAEAVFEELK  327 (664)
Q Consensus       264 d~~~~~~li~~~~~-~g~~~~----A~~~~~~~~-~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~l~~~m~  327 (664)
                      +...|..-+..--+ .|+...    ..+.|+... +.|+.+- ...|+..+..+         ..+.+++...++|+++.
T Consensus        85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral  164 (656)
T KOG1914|consen   85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL  164 (656)
T ss_pred             hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence            45566665553222 233333    233444333 4454443 33455555433         34456777888888887


Q ss_pred             Hc
Q 006012          328 ES  329 (664)
Q Consensus       328 ~~  329 (664)
                      ..
T Consensus       165 ~t  166 (656)
T KOG1914|consen  165 VT  166 (656)
T ss_pred             cC
Confidence            64

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.16  E-value=0.00069  Score=62.95  Aligned_cols=134  Identities=19%  Similarity=0.135  Sum_probs=108.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      +.|....+..+....+.|++.+|...|++..... ++|...|+.+.-+|.+.|+.++|..-|.+..+.-.. +...+|.|
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNl  174 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNL  174 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhH
Confidence            4566677778888888999999999999888754 678889999999999999999999999888875332 55678888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV  398 (664)
Q Consensus       342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  398 (664)
                      ...+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++-.+-..
T Consensus       175 gms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         175 GMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            88888889999999999888876543 677777788888889999999887765543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0055  Score=57.12  Aligned_cols=107  Identities=19%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE  527 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~  527 (664)
                      +..+++-|.+.++.|.+-   -+..+.+.|..++.+    .+.+.+|+-+|++|.++- .|+..+.+....++...|+++
T Consensus       149 k~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  149 KMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHH
Confidence            334444444444444431   233333434443332    233455555555554432 455555555555555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006012          528 DVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD  563 (664)
Q Consensus       528 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  563 (664)
                      +|..++++....... ++.+...++-+-...|...+
T Consensus       225 eAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  225 EAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence            555555555554322 44444444444444444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.12  E-value=0.0014  Score=72.24  Aligned_cols=239  Identities=15%  Similarity=0.148  Sum_probs=150.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHH
Q 006012          189 QRLTPLTYNALISACARNDDLEKA-LNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQL  267 (664)
Q Consensus       189 ~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~  267 (664)
                      +.-++...+.+=.+.+.-|..++| .++..+..+            ++...++.....+++ -++.....  ....++..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~   88 (694)
T PRK15179         24 PASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAAL-PELLDYVR--RYPHTELF   88 (694)
T ss_pred             CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhH-HHHHHHHH--hccccHHH
Confidence            334555556565666677777666 344444432            222222222211111 12222222  34566888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK  347 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  347 (664)
                      +-.|.......|.+++|..+++...+.. +.+......+..++.+.+++++|+..+++....... +....+.+..++.+
T Consensus        89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~  166 (694)
T PRK15179         89 QVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDE  166 (694)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Confidence            8888888888899999999998888753 334667778888888899999999998888876433 66777778888888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV  427 (664)
Q Consensus       348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  427 (664)
                      .|++++|..+|+++...+.. +..++..+...+-..|+.++|...|++..+.. .+....|+..+.      +...-...
T Consensus       167 ~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~  238 (694)
T PRK15179        167 IGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAA  238 (694)
T ss_pred             hcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHH
Confidence            89999999999988874432 57788888888888899999998888887653 233344444332      23334445


Q ss_pred             HHHHHHCC----CCCCHHHHHHHHHHHhc
Q 006012          428 LKEMKSSG----VEPDTHFYNVMIDTFGK  452 (664)
Q Consensus       428 ~~~m~~~g----~~~~~~~~~~li~~~~~  452 (664)
                      ++.+.-.+    .+....+...+|.-|.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (694)
T PRK15179        239 LRRLGVEGDGRDVPVSILVLEKMLQEIGR  267 (694)
T ss_pred             HHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence            55543332    22333444444544444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.10  E-value=0.00097  Score=62.00  Aligned_cols=156  Identities=17%  Similarity=0.149  Sum_probs=105.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC  488 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  488 (664)
                      ..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+.+..... ++|...|+.+..+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            44455556666655555555543321 13344555556777777777777777777776544 56777788887788888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006012          489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECL  568 (664)
Q Consensus       489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  568 (664)
                      |+++.|..-|.+..+-. +-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++.
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            88888887777777654 344566677777777778888888887777765432 6667777777777888888877764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.10  E-value=0.0018  Score=71.41  Aligned_cols=220  Identities=9%  Similarity=0.029  Sum_probs=150.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHH
Q 006012          260 KIELDGQLLNDVIVGFAKAGDASKAM-RFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE--SGLKPRTK  336 (664)
Q Consensus       260 ~~~~d~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~~p~~~  336 (664)
                      |...+......+=.+...-|..++|- +++.++.+               ...+.+.+..+..-+-++..  +....+..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (694)
T PRK15179         23 GPASGPTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTEL   87 (694)
T ss_pred             CCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHH
Confidence            33445555555556666667777764 34444332               33344444443333333322  22344678


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012          337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR  416 (664)
Q Consensus       337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~  416 (664)
                      .+-.|.......|..++|..+++...+.... +......++..+.+.+++++|+..+++..... +-+......+..++.
T Consensus        88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~  165 (694)
T PRK15179         88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHH
Confidence            8888888889999999999999998886433 46677778888899999999999999888765 446666777888888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEE  496 (664)
Q Consensus       417 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  496 (664)
                      +.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|+...+.. .+...-|+..+      ++...-..
T Consensus       166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~  237 (694)
T PRK15179        166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLA  237 (694)
T ss_pred             HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHH
Confidence            8999999999999988743 3457888888888889999999999999888653 34445555443      33444555


Q ss_pred             HHHHHHHC
Q 006012          497 LFEEMQER  504 (664)
Q Consensus       497 ~~~~m~~~  504 (664)
                      +++++.-.
T Consensus       238 ~~~~~~~~  245 (694)
T PRK15179        238 ALRRLGVE  245 (694)
T ss_pred             HHHHcCcc
Confidence            66666433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.09  E-value=0.00019  Score=62.97  Aligned_cols=96  Identities=9%  Similarity=-0.142  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK  347 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  347 (664)
                      +..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|+.....+. .+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence            4455667777788888888888777654 44677777778888888888888888888776543 366777777777778


Q ss_pred             cCCHHHHHHHHHHHHHCC
Q 006012          348 MGYLKDAEFVVSEMERSG  365 (664)
Q Consensus       348 ~g~~~~a~~~~~~m~~~g  365 (664)
                      .|+.++|...|+...+..
T Consensus       105 ~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            888888888888777653

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.07  E-value=6.6e-06  Score=52.23  Aligned_cols=34  Identities=35%  Similarity=0.561  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh
Q 006012          195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDF  228 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  228 (664)
                      +||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            7999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.99  E-value=0.00031  Score=61.61  Aligned_cols=91  Identities=11%  Similarity=-0.004  Sum_probs=41.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012          412 LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY  491 (664)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  491 (664)
                      ...+...|++++|...|+...... +.+...+..+...+.+.|++++|...|+...+.. +.+...+..+..++.+.|++
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence            344444444444444444444332 2334444444444444444444444444444432 22344444444444444555


Q ss_pred             HHHHHHHHHHHHC
Q 006012          492 DRAEELFEEMQER  504 (664)
Q Consensus       492 ~~A~~~~~~m~~~  504 (664)
                      ++|...|+...+.
T Consensus       109 ~eAi~~~~~Al~~  121 (144)
T PRK15359        109 GLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHHHHHHh
Confidence            5555544444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.95  E-value=0.0043  Score=62.83  Aligned_cols=112  Identities=13%  Similarity=0.140  Sum_probs=54.9

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006012          346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN-SFIYSRILAGYRDRGEWQRT  424 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a  424 (664)
                      ...|+.++|+..++.+...-. -|...+....+.+.+.++.++|.+.++++....  |+ ...+-.+..++.+.|++.+|
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHH
Confidence            344555555555555554422 134444444455555555555555555554432  22 33444445555555555555


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012          425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA  461 (664)
Q Consensus       425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  461 (664)
                      +.+++...... +.|...|..|..+|...|+..++..
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence            55555544332 3445555555555555555444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.91  E-value=1.7e-05  Score=49.93  Aligned_cols=33  Identities=42%  Similarity=0.724  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 006012          194 LTYNALISACARNDDLEKALNLMSKMRQDGYHC  226 (664)
Q Consensus       194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  226 (664)
                      .+||++|.+|++.|+++.|.++|++|.+.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999887

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.89  E-value=2.4e-05  Score=49.58  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012          593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD  625 (664)
Q Consensus       593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  625 (664)
                      +|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            799999999999999999999999999999998

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.88  E-value=0.00074  Score=58.58  Aligned_cols=97  Identities=11%  Similarity=0.040  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL  520 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~  520 (664)
                      .....+...+.+.|++++|...++.+...+ +.+...|..+...|.+.|++++|..++++..+.+ +.+...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            334445555566666666666666665543 2355556666666666666666666666665554 44455555666666


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 006012          521 GEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       521 ~~~g~~~~a~~~~~~m~~~  539 (664)
                      ...|++++|...+++..+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.012  Score=54.50  Aligned_cols=185  Identities=16%  Similarity=0.148  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          419 GEWQRTFQVLKEMKS---SG-VEPDTH-FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR  493 (664)
Q Consensus       419 g~~~~a~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  493 (664)
                      .+.++..+++.++..   .| ..++.. .|..++-+....|+.+.|...++.+...- +-+...-..-..-+-..|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            456666666666653   22 333332 23344445555666666666666665442 1111111111111233566666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHH
Q 006012          494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD  573 (664)
Q Consensus       494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  573 (664)
                      |+++++.+++.+ +.|.+++-.-+-..-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-+++    
T Consensus       105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE----  178 (289)
T KOG3060|consen  105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE----  178 (289)
T ss_pred             HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH----
Confidence            666666666665 555555555555555556555666666555554 44566666666666666666666655533    


Q ss_pred             HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 006012          574 QAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQ---RDAEAFAVLQYMKE  619 (664)
Q Consensus       574 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g---~~~~A~~~~~~m~~  619 (664)
                             ++.-  +.|-. ..+..+...+.-.|   +..-|.+++.+.++
T Consensus       179 -------E~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  179 -------ELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             -------HHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                   2222  23433 23444444444333   34445566666655

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.83  E-value=0.079  Score=57.83  Aligned_cols=217  Identities=18%  Similarity=0.076  Sum_probs=145.7

Q ss_pred             CCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH--HcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012          140 NSSIDLAYAVVSWLQKHNLCYSYELLYSILIHA--LGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKAL  213 (664)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~  213 (664)
                      .+.+..|++....+.+..  |+.  .+...+.+  +.|.|+.++|..+    ......|..|...+-.+|.+.|+.++|.
T Consensus        22 ~~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hHHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            456788999888888764  332  33333333  4578999999876    2223347789999999999999999999


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-C---------H
Q 006012          214 NLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSS--LLQKLYKEIECDKIELDGQLLNDVIVGFAKAG-D---------A  281 (664)
Q Consensus       214 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~--~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g-~---------~  281 (664)
                      .+|++....  .|+......++.++.+.+.+...  .+.++++     .++-....+=+++..+.+.- .         .
T Consensus        98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen   98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence            999999876  57777777888888887765321  2334444     23444444444444444331 1         2


Q ss_pred             HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          282 SKAMRFLGMAQGVG-LSPKTATYAAVITALSNSGRTIEAEAVFE-ELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVS  359 (664)
Q Consensus       282 ~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  359 (664)
                      .-|.+.++.+.+.+ ---+..-.......+-..|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence            34566667666544 22233334445566677889999999994 44444344455666777888899999999999999


Q ss_pred             HHHHCCCC
Q 006012          360 EMERSGVL  367 (664)
Q Consensus       360 ~m~~~g~~  367 (664)
                      ++...|..
T Consensus       251 ~Ll~k~~D  258 (932)
T KOG2053|consen  251 RLLEKGND  258 (932)
T ss_pred             HHHHhCCc
Confidence            99888644

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.81  E-value=3.8e-05  Score=48.26  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012          592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKP  624 (664)
Q Consensus       592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  624 (664)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999987

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.79  E-value=0.0012  Score=57.23  Aligned_cols=95  Identities=8%  Similarity=0.153  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK  487 (664)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  487 (664)
                      ...+...+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...|..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            3444444555555555555555554433 3344555555555555555666666555555443 2344455555556666


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 006012          488 CGRYDRAEELFEEMQER  504 (664)
Q Consensus       488 ~g~~~~A~~~~~~m~~~  504 (664)
                      .|++++|...|++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        98 LGEPESALKALDLAIEI  114 (135)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            66666666666665554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.71  E-value=0.12  Score=56.47  Aligned_cols=500  Identities=14%  Similarity=0.074  Sum_probs=262.0

Q ss_pred             hcCCChhhHHHHHHHHh-cCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hC--CCCCCHHHH
Q 006012          121 YRAVPAPLWHSLLKNLC-SSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQ--RQRLTPLTY  196 (664)
Q Consensus       121 ~~~~~~~~~~~~l~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~--~~~~~~~~~  196 (664)
                      .+..|..++..+|+.+. .+.|..++|..+.+.....+  +++..+...+.+.|...++.++|..+ ..  ..-|+..-.
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell  113 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELL  113 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHH
Confidence            44567777877887765 35677889998888776555  55788999999999999999999988 22  223345555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--------CChHHHHHHHHHHHhCC-CCCCHHH
Q 006012          197 NALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK--------IDSSLLQKLYKEIECDK-IELDGQL  267 (664)
Q Consensus       197 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--------~~~~~~~~l~~~~~~~~-~~~d~~~  267 (664)
                      ..+--+|+|-+++.+-.+.--+|-+ .++-+.+.+=++++.....-.        .-.+++++.++.+.+.+ .--...-
T Consensus       114 ~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE  192 (932)
T KOG2053|consen  114 YHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE  192 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence            6666778888877664444333333 234445555455544443211        12245677777777765 1112222


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          268 LNDVIVGFAKAGDASKAMRFLG-MAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      .-.-....-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.. |   |...++.+.
T Consensus       193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~  268 (932)
T KOG2053|consen  193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVF  268 (932)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHH
Confidence            2222334556799999999984 4433333445556667788889999999999999999887643 2   333332211


Q ss_pred             ----------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCCCHHH
Q 006012          347 ----------------KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA---NAGRWESARIVLKEMEVSHAKPNSFI  407 (664)
Q Consensus       347 ----------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~~~~~~~~~  407 (664)
                                      ..+.++...+..++.....   ....|-+-+.++.   .-|+.+++...|-+-  .|-.   ..
T Consensus       269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~k---pc  340 (932)
T KOG2053|consen  269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDK---PC  340 (932)
T ss_pred             HHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCC---cH
Confidence                            1223344444444433321   1122333333333   347777755443222  1111   12


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHhccC-----CHHHHHHHHHHHH---HCC
Q 006012          408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT---------HFYNVMIDTFGKYN-----CLHHAMAAFDRML---SEG  470 (664)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~---------~~~~~li~~~~~~g-----~~~~A~~~~~~m~---~~g  470 (664)
                      |..=+..|...=..++...++.......  ++.         .+.+..+.  .-.|     .-+.-..++.+..   ++|
T Consensus       341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~--rl~G~~~~l~ad~i~a~~~kl~~~ye~g  416 (932)
T KOG2053|consen  341 CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLL--RLLGLYEKLPADSILAYVRKLKLTYEKG  416 (932)
T ss_pred             hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHH--HHhhccccCChHHHHHHHHHHHHHHhcc
Confidence            2222222222223333333333322211  111         11111111  1111     1122222222211   111


Q ss_pred             ------CCCCHH---------HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          471 ------IEPDTI---------TWNTLIDCHFKCGRYD---RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL  532 (664)
Q Consensus       471 ------~~~~~~---------~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~  532 (664)
                            +-|+..         +-+.|++.+-+.++..   +|+-+++.-.... +-|..+-..+|+.|+-.|-+..|.++
T Consensus       417 ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~  495 (932)
T KOG2053|consen  417 LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYEL  495 (932)
T ss_pred             ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHH
Confidence                  122222         2366777888877765   3444444444443 44556666788888888888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          533 LGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFA  612 (664)
Q Consensus       533 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  612 (664)
                      +..+--++++.|..-|. +...+...|++..+...++    +....|..-..     +  +-..+.-|| +.|.+.+..+
T Consensus       496 y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~----~~lkfy~~~~k-----E--~~eyI~~AY-r~g~ySkI~e  562 (932)
T KOG2053|consen  496 YKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFN----EHLKFYDSSLK-----E--TPEYIALAY-RRGAYSKIPE  562 (932)
T ss_pred             HHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHH----HHHHHHhhhhh-----h--hHHHHHHHH-HcCchhhhHH
Confidence            88887666665544332 3455566777777766654    22222322221     1  111122222 4555555544


Q ss_pred             HH---HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012          613 VL---QYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFN  653 (664)
Q Consensus       613 ~~---~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~  653 (664)
                      +.   ++|......--..+-+..++.++..++.++-...++-++
T Consensus       563 m~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  563 MLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK  606 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence            32   222211111122334556666677777777666666444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.70  E-value=3.7e-05  Score=47.11  Aligned_cols=31  Identities=39%  Similarity=0.696  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 006012          194 LTYNALISACARNDDLEKALNLMSKMRQDGY  224 (664)
Q Consensus       194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  224 (664)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3799999999999999999999999999874

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.68  E-value=0.00075  Score=69.12  Aligned_cols=123  Identities=18%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHH
Q 006012          506 YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMR  583 (664)
Q Consensus       506 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~  583 (664)
                      .+.+......+++.+....+.+++..++.+....  ....-+.|..++++.|.+.|..+++++++.           .=.
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~-----------n~~  130 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK-----------NRL  130 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh-----------Chh
Confidence            3556666667777777777777777777766654  222233455677777777777666666533           333


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          584 TDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV  639 (664)
Q Consensus       584 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~  639 (664)
                      ..|+-||..+++.|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus       131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            45777777777777777777777777777777776666666666666555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.68  E-value=0.0017  Score=66.33  Aligned_cols=125  Identities=13%  Similarity=0.125  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      ....|+..+...++++.|+++|+++.+..  |+.  ...+++.+...++-.+|.+++++..+.. +-+....+.-...+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            33455666666788899999999888753  443  3457777777888888888888887653 236666777777788


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      +.++.+.|.++.+++.+..+. +..+|..|..+|.+.|+++.|+..+..+.
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            888888888888888876322 45688888888888888888888887664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.66  E-value=0.0033  Score=55.23  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---TATYAAVITALSNSGRTIEAEAVFEELKESGLKPR--TKAYNALL  342 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li  342 (664)
                      |..++..+ ..++...+.+.++.+.+.. +.+   ....-.+...+...|++++|...|+........++  ....-.|.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            33333333 3666666666666666543 222   22333344666667777777777777666542222  12333455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006012          343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKE  395 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  395 (664)
                      ..+...|++++|...++......  .....+....+.|.+.|++++|...|+.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66666677777777765543322  2344555566666667777776666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.053  Score=50.43  Aligned_cols=162  Identities=16%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK  347 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  347 (664)
                      |..++-+...+|+.+.|...++.+...- +.+...-..-...+-..|++++|.++|+.+++.+ +.|.+++.-=+...-.
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka  132 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA  132 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence            3444555566677777777777665532 2222222222223344567777777777777654 3355666655555556


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 006012          348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG---EWQRT  424 (664)
Q Consensus       348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a  424 (664)
                      .|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...+..+...+...|   +..-+
T Consensus       133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            66666666666665554 33467777777777777777777777777766432 334444444444444333   34445


Q ss_pred             HHHHHHHHH
Q 006012          425 FQVLKEMKS  433 (664)
Q Consensus       425 ~~~~~~m~~  433 (664)
                      .+.|....+
T Consensus       211 rkyy~~alk  219 (289)
T KOG3060|consen  211 RKYYERALK  219 (289)
T ss_pred             HHHHHHHHH
Confidence            555555444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.64  E-value=0.0021  Score=65.63  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=58.4

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER  525 (664)
Q Consensus       446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~  525 (664)
                      ++..+...+.++.|..+++++.+..  |+.  ...++..+...++-.+|.+++++..+.. +-+...+..-.+.|.+.++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            3334444455555555555555432  322  2234444445555555555555555432 3344444444445555555


Q ss_pred             HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          526 WEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       526 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      ++.|.++.+++.+.  .| +..+|..|..+|.+.|++++|+-.++
T Consensus       250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            55555555555553  23 23455555555555555555555544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.62  E-value=0.0023  Score=56.27  Aligned_cols=115  Identities=15%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 006012          523 QERWEDVKRLLGNMRAQGLLPN--VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS--NLALNSLI  598 (664)
Q Consensus       523 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li  598 (664)
                      .++...+...++.+......-.  ......+...+...|++++|...|+           ........|+  ......|.
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~-----------~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALE-----------KALANAPDPELKPLARLRLA   92 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH-----------HHHhhCCCHHHHHHHHHHHH
Confidence            5566666666666665422111  1222334455666666666655533           3333221111  12334456


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          599 NAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       599 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      ..+...|++++|+..++....  -......+...+++|.+.|++++|++.|+
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            677777788888777755332  22344566677778888888888887776

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.61  E-value=0.001  Score=68.21  Aligned_cols=123  Identities=17%  Similarity=0.228  Sum_probs=86.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          296 LSPKTATYAAVITALSNSGRTIEAEAVFEELKES--GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY  373 (664)
Q Consensus       296 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  373 (664)
                      .+.+......+++.+....+++++..++.+....  ....-..|..++|+.|.+.|..+.+..+++.=...|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3456666666777777777777777777776653  22222345567778888888888888877777777877888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006012          374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR  418 (664)
Q Consensus       374 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~  418 (664)
                      |.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            888888888888888888777777666666666666666666554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.59  E-value=0.048  Score=57.55  Aligned_cols=58  Identities=17%  Similarity=0.138  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHH
Q 006012          593 ALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMKALIRVDK---FHKVFSSYL  650 (664)
Q Consensus       593 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~a~~~~g~---~~~A~~~~~  650 (664)
                      +|..|..-....|.++.|++.--.+.+ ..+-|-..+|..|.-+-+....   -.+|+.-++
T Consensus      1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            344444555567888888876555544 2456666777766554444333   344544433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.57  E-value=0.0013  Score=52.86  Aligned_cols=77  Identities=18%  Similarity=0.316  Sum_probs=49.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGVGL-SPKTATYAAVITALSNSG--------RTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      .|.-+...+++...-.+|+.+++.|+ -|++.+|+.++.+.++..        ++-+.+.+|+.|+..+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            34444455777777777777777777 677777777777666543        233456666666666666666666666


Q ss_pred             HHHHHh
Q 006012          342 LKGYVK  347 (664)
Q Consensus       342 i~~~~~  347 (664)
                      +..+.+
T Consensus       111 l~~Llk  116 (120)
T PF08579_consen  111 LGSLLK  116 (120)
T ss_pred             HHHHHH
Confidence            665543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.51  E-value=0.00011  Score=44.99  Aligned_cols=31  Identities=32%  Similarity=0.506  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          592 LALNSLINAFGEDQRDAEAFAVLQYMKENGL  622 (664)
Q Consensus       592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  622 (664)
                      ++|+.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3799999999999999999999999998774

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.44  E-value=0.004  Score=50.07  Aligned_cols=87  Identities=17%  Similarity=0.287  Sum_probs=61.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH
Q 006012          514 NIMINLLGEQERWEDVKRLLGNMRAQGL-LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL  592 (664)
Q Consensus       514 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~  592 (664)
                      ...|..|...+++...-.+++.+++.|+ .|+..+|+.++.+.++..--..+   ++....+.+.+|+.|...+++|+..
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~---ie~kl~~LLtvYqDiL~~~lKP~~e  105 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED---IENKLTNLLTVYQDILSNKLKPNDE  105 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh---HHHHHHHHHHHHHHHHHhccCCcHH
Confidence            3445556666888888888888888888 78888888888887765432222   2233445667788888888888888


Q ss_pred             HHHHHHHHHHh
Q 006012          593 ALNSLINAFGE  603 (664)
Q Consensus       593 ~~~~li~~~~~  603 (664)
                      +|+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.41  E-value=0.0018  Score=63.59  Aligned_cols=134  Identities=13%  Similarity=-0.039  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC
Q 006012          511 TTYNIMINLLGEQERWEDVKRLLGNMRA----QGLL-PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD  585 (664)
Q Consensus       511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~  585 (664)
                      ..|..|.+.|.-.|+++.|....+.-..    .|-+ .....+..|..++.-.|+++.|.+.++.-..-|+++=++-.  
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--  273 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--  273 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--
Confidence            3456666666777889998877764332    2211 23467788889999999999999988755555544432222  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          586 GLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE----N-GLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       586 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                          ...+..+|.+.|.-...+++|+.++.+=+.    . ...-....+++|..++...|..++|..+.+
T Consensus       274 ----EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  274 ----EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             ----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence                234566788888888889999988776432    1 123356788999999999999999988877

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.39  E-value=0.0036  Score=49.57  Aligned_cols=93  Identities=22%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      ..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+...+.... +..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence            334455555666666666666655432 223345555555555666666666666555543221 234455555555555


Q ss_pred             CCHHHHHHHHHHHHH
Q 006012          349 GYLKDAEFVVSEMER  363 (664)
Q Consensus       349 g~~~~a~~~~~~m~~  363 (664)
                      |+.+.|...+....+
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            555555555555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.34  E-value=0.0042  Score=49.20  Aligned_cols=88  Identities=15%  Similarity=0.193  Sum_probs=38.6

Q ss_pred             HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          448 DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE  527 (664)
Q Consensus       448 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~  527 (664)
                      ..+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|+++
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence            33344444444444444444332 1122334444444444455555555555444433 222234444444444555555


Q ss_pred             HHHHHHHHHH
Q 006012          528 DVKRLLGNMR  537 (664)
Q Consensus       528 ~a~~~~~~m~  537 (664)
                      +|...+.+..
T Consensus        86 ~a~~~~~~~~   95 (100)
T cd00189          86 EALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHH
Confidence            5555444443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.33  E-value=0.0036  Score=56.91  Aligned_cols=97  Identities=19%  Similarity=0.373  Sum_probs=65.1

Q ss_pred             CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh-------hhHHHH
Q 006012          508 PCTTTYNIMINLLGE-----QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE-------GLSDQA  575 (664)
Q Consensus       508 p~~~t~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-------~~~~~a  575 (664)
                      .+..+|..+++.+.+     .|..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+       ...+-|
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~  122 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECA  122 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHH
Confidence            345566666666543     35566666667777777777777777777777665 3322 111222       334557


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          576 VNAFRVMRTDGLKPSNLALNSLINAFGEDQR  606 (664)
Q Consensus       576 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  606 (664)
                      ++++++|...|+-||..++..+++.+++.+.
T Consensus       123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            8889999999999999999999999965554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.25  E-value=0.013  Score=49.19  Aligned_cols=59  Identities=17%  Similarity=0.066  Sum_probs=23.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMERSGVL--PDEHTYSLLIDAYANAGRWESARIVLKEMEV  398 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  398 (664)
                      .+..++.+.|+++.|...++.+......  ....++..+...+.+.|+.++|...++++..
T Consensus        44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            3444444444444444444444332111  0122333344444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.25  E-value=0.013  Score=49.20  Aligned_cols=100  Identities=15%  Similarity=0.034  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLS--PKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNALL  342 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~li  342 (664)
                      ++-.+...+.+.|++++|.+.|+.+.+....  .....+..+...+.+.|++++|.+.|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4556677788899999999999999865311  12456777899999999999999999998875322  1245677888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          343 KGYVKMGYLKDAEFVVSEMERSGV  366 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~~g~  366 (664)
                      .++.+.|+.++|.+.++++.+...
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCc
Confidence            889999999999999999988753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.21  E-value=0.1  Score=51.72  Aligned_cols=112  Identities=19%  Similarity=0.386  Sum_probs=53.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHh
Q 006012          378 DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR-GEWQRTFQVLKEMKS----SGVE-PDTHFYNVMIDTFG  451 (664)
Q Consensus       378 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~----~g~~-~~~~~~~~li~~~~  451 (664)
                      ..|...|++..|-+++..+-               ..|... |++++|++.|.+...    .+.. .-..++..+...+.
T Consensus       102 ~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA  166 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence            44556666666655555443               334444 566666666655432    1100 01233445555666


Q ss_pred             ccCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          452 KYNCLHHAMAAFDRMLSEGIE-----PDTI-TWNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~~g~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                      +.|++++|.++|+++......     .+.. .+-..+-++...|++-.|.+.|++....
T Consensus       167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            667777777777666653211     1111 1222233455566777777777766544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.20  E-value=0.0079  Score=54.73  Aligned_cols=104  Identities=12%  Similarity=0.187  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCH
Q 006012          191 LTPLTYNALISACAR-----NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDG  265 (664)
Q Consensus       191 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~  265 (664)
                      .+-.+|..+|..|.+     .|.++=....+..|.+.|+.-|..+|+.||..+-+..-...    .+|+.+--.      
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~----n~fQ~~F~h------  114 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPR----NFFQAEFMH------  114 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccc----cHHHHHhcc------
Confidence            344555555555543     35666666677788888888888888888876665222211    122221110      


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR  315 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  315 (664)
                                 .-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus       115 -----------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 -----------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -----------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                       112345566666666666666666666666666665554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.18  E-value=0.013  Score=50.78  Aligned_cols=93  Identities=10%  Similarity=-0.025  Sum_probs=64.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      -.+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|++.|.......+ -|...+-.+..++...
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence            344455667778888888877776643 33556666777777777777777777777776654 3666677777777777


Q ss_pred             CCHHHHHHHHHHHHH
Q 006012          349 GYLKDAEFVVSEMER  363 (664)
Q Consensus       349 g~~~~a~~~~~~m~~  363 (664)
                      |+.+.|.+.|+..+.
T Consensus       117 G~~~~A~~aF~~Ai~  131 (157)
T PRK15363        117 DNVCYAIKALKAVVR  131 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777777777776654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.13  E-value=0.043  Score=54.38  Aligned_cols=50  Identities=22%  Similarity=0.213  Sum_probs=36.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 006012          274 GFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFE  324 (664)
Q Consensus       274 ~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~  324 (664)
                      -+|+.|+....+.+|+..++.|. .|    ...|..|..+|.-.+++++|++...
T Consensus        26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~   79 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT   79 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence            46788888888888888888773 23    3346667777777788888877654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.12  E-value=0.018  Score=50.04  Aligned_cols=97  Identities=11%  Similarity=-0.046  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDA  379 (664)
Q Consensus       300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  379 (664)
                      ....-.+...+...|++++|.++|+.+...... +..-|-.|..++-..|++++|+..|.......+. |...+-.+..+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c  112 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence            334555566677788888888888877765432 5566667777777778888888888887776643 67777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHh
Q 006012          380 YANAGRWESARIVLKEMEV  398 (664)
Q Consensus       380 ~~~~g~~~~A~~l~~~m~~  398 (664)
                      +...|+.+.|.+.|+..+.
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            8888888888877776654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.12  E-value=0.034  Score=50.48  Aligned_cols=91  Identities=14%  Similarity=0.099  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      ....+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence            445667777788888999999999988876432222  457888888888899999999998888875322 45666677


Q ss_pred             HHHHHhcCCHHHHH
Q 006012          342 LKGYVKMGYLKDAE  355 (664)
Q Consensus       342 i~~~~~~g~~~~a~  355 (664)
                      ...+...|+...+.
T Consensus       113 g~~~~~~g~~~~a~  126 (172)
T PRK02603        113 AVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHcCChHhHh
Confidence            77777777654443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.10  E-value=0.018  Score=56.82  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN-SGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      +|-.++...-+.+..+.|..+|.++.+.+ ..+...|......-.+ .++.+.|.++|+...+. ...+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45555555555555666666666665432 1223333333333222 34444466666665553 333555566666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          346 VKMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGRWESARIVLKEMEV  398 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~  398 (664)
                      .+.++.+.|..+|++.... + +..    ..|...+..=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666543 1 222    3556666655566666666666655554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.10  E-value=0.0073  Score=57.47  Aligned_cols=95  Identities=20%  Similarity=0.254  Sum_probs=45.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 006012          521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLIN  599 (664)
Q Consensus       521 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~  599 (664)
                      .+.+++.+|...|.+.++.... |.+-|..-..+|++.|.++.|++-.+..+           .  +.|.. .+|..|..
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al-----------~--iDp~yskay~RLG~  157 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESAL-----------S--IDPHYSKAYGRLGL  157 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHH-----------h--cChHHHHHHHHHHH
Confidence            3445555555555555554222 44444445555555555555544322100           0  22221 24555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012          600 AFGEDQRDAEAFAVLQYMKENGLKPDVVTYTT  631 (664)
Q Consensus       600 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  631 (664)
                      +|...|++++|++.|++.++  +.|+-.+|..
T Consensus       158 A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~  187 (304)
T KOG0553|consen  158 AYLALGKYEEAIEAYKKALE--LDPDNESYKS  187 (304)
T ss_pred             HHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence            55555555555555555555  4554444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.07  E-value=0.31  Score=46.85  Aligned_cols=57  Identities=18%  Similarity=0.054  Sum_probs=26.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          307 ITALSNSGRTIEAEAVFEELKESGLKPRTKA---YNALLKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      ...+.+.|++++|.+.|+.+...-... ...   .-.+..++.+.+++++|...+++..+.
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            333444555555555555555432211 111   123344455555555555555555544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.06  E-value=0.022  Score=51.44  Aligned_cols=105  Identities=11%  Similarity=-0.017  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP--CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV  552 (664)
Q Consensus       475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  552 (664)
                      ...|..+...+...|++++|+..|++.......+  ...++..+...+...|++++|.+.+++...... ....++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence            4456666667777788888888888876553122  234677777788888888888888888776522 2344555555


Q ss_pred             HHHH-------hcCChHHHHHHHhhhHHHHHHHHHHHHH
Q 006012          553 DIYG-------QSGRFDDAIECLEGLSDQAVNAFRVMRT  584 (664)
Q Consensus       553 ~~~~-------~~g~~~~A~~~~~~~~~~a~~~~~~m~~  584 (664)
                      ..+.       +.|+++.|...+    ++|...|++...
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~----~~a~~~~~~a~~  148 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWF----DQAAEYWKQAIA  148 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHH----HHHHHHHHHHHH
Confidence            5665       677777766543    345555555543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.05  E-value=0.15  Score=54.80  Aligned_cols=158  Identities=14%  Similarity=0.052  Sum_probs=87.1

Q ss_pred             HHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc
Q 006012          168 ILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARN--D---DLEKALNLMSKMRQDGYHCDF-INYSLVIQSLTRT  241 (664)
Q Consensus       168 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~  241 (664)
                      .++.++...-...+........+.|..+|...+++....  +   ...+|+.+|++..+..  |+. ..|..+..++...
T Consensus       312 ~Ia~aL~~~l~~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~  389 (517)
T PRK10153        312 SLSRALNQPWPERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVR  389 (517)
T ss_pred             HHHHHhCccccHHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHH
Confidence            344444333223333334566778899999999886543  2   3779999999999874  554 3343332222221


Q ss_pred             CCCC---hHHHHHHHHHHHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006012          242 NKID---SSLLQKLYKEIEC---D-KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG  314 (664)
Q Consensus       242 g~~~---~~~~~~l~~~~~~---~-~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  314 (664)
                      ..+.   +.......+...+   . ..+.+...|.++.-.+...|++++|...++++...+  |+...|..+...+...|
T Consensus       390 ~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G  467 (517)
T PRK10153        390 HSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG  467 (517)
T ss_pred             HhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC
Confidence            1111   1111122222211   1 123344556655555555667777777776666643  46666666666666667


Q ss_pred             ChHHHHHHHHHHHHc
Q 006012          315 RTIEAEAVFEELKES  329 (664)
Q Consensus       315 ~~~~A~~l~~~m~~~  329 (664)
                      +.++|.+.|++....
T Consensus       468 ~~~eA~~~~~~A~~L  482 (517)
T PRK10153        468 DNRLAADAYSTAFNL  482 (517)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            777766666666553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.03  E-value=0.014  Score=52.77  Aligned_cols=96  Identities=16%  Similarity=0.058  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP--DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI  517 (664)
Q Consensus       440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll  517 (664)
                      ...+..+...+...|++++|+..|+........+  ...+|..+...|...|++++|++.+++..... +....++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            3444555555666677777777776666442121  12356666677777777777777777776553 33344455555


Q ss_pred             HHHH-------hcCCHHHHHHHHHHH
Q 006012          518 NLLG-------EQERWEDVKRLLGNM  536 (664)
Q Consensus       518 ~~~~-------~~g~~~~a~~~~~~m  536 (664)
                      ..+.       ..|++++|...+++.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            5555       666766555555443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.02  E-value=0.44  Score=47.68  Aligned_cols=106  Identities=13%  Similarity=0.164  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      +.+..|.-+...|+...|.++-.+..    -|+...|-..+.+|+..+++++-.++...   +   -+++-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence            44555666777888888888866663    58888999999999999999887776542   1   23477888999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          522 EQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      +.|+..+|..++.++     .     +..-+..|.++|++.+|.+.
T Consensus       249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence            999999998888772     1     25567888999999998765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.01  E-value=0.017  Score=59.23  Aligned_cols=93  Identities=9%  Similarity=0.030  Sum_probs=74.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012          411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR  490 (664)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  490 (664)
                      ....+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            3556677888999999998888764 4567778888888888899999999888888764 3456778888888888899


Q ss_pred             HHHHHHHHHHHHHCC
Q 006012          491 YDRAEELFEEMQERG  505 (664)
Q Consensus       491 ~~~A~~~~~~m~~~~  505 (664)
                      +++|+..|++.++.+
T Consensus        86 ~~eA~~~~~~al~l~  100 (356)
T PLN03088         86 YQTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999988888764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.01  E-value=0.059  Score=48.87  Aligned_cols=112  Identities=11%  Similarity=0.066  Sum_probs=48.9

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          444 NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD--TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       444 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      ..+...+...|++++|...|++..+....+.  ...+..+...|.+.|++++|...+++..... +-+...+..+...+.
T Consensus        39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~  117 (172)
T PRK02603         39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3333344444444444444444443221111  2334444444445555555555555444432 122333333334443


Q ss_pred             hcCC--------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          522 EQER--------------WEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR  560 (664)
Q Consensus       522 ~~g~--------------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  560 (664)
                      ..|+              +++|.+++.+....    ++..|..++..+...|+
T Consensus       118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~  166 (172)
T PRK02603        118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR  166 (172)
T ss_pred             HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence            3333              45566666665553    22235555555554443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.00  E-value=0.018  Score=56.85  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT-FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH  485 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  485 (664)
                      +|..+++...+.+..+.|..+|.+.++.+ ..+..+|...... |...++.+.|.++|+...+. +..+...|..-++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34444444444444444555554444321 1122222222222 11123344455555554443 233444455555555


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPC---TTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      .+.|+.+.|..+|++.... +.++   ...|...++-=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555443 1111   12455555544555555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.99  E-value=0.2  Score=48.21  Aligned_cols=177  Identities=11%  Similarity=0.063  Sum_probs=90.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY---SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR  416 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~  416 (664)
                      .....+.+.|++++|.+.|+.+...-... ....   -.++.+|.+.+++++|...+++..+........-+...+.+.+
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence            34455566788888888888887754332 2222   3456677788888888888888877654333333433333332


Q ss_pred             h--cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          417 D--RG---------------E---WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI  476 (664)
Q Consensus       417 ~--~g---------------~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  476 (664)
                      .  .+               +   ..+|++.|+.+++               -|-...-..+|...+..+...   . ..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---l-a~  176 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---L-AK  176 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---H-HH
Confidence            1  10               1   1122233333322               222222233443333333211   0 00


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          477 TWNTLIDCHFKCGRYDRAEELFEEMQER--GYFPCTTTYNIMINLLGEQERWEDVKRLLGNM  536 (664)
Q Consensus       477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m  536 (664)
                      .--.+..-|.+.|.+..|..-++.++++  +.+........++.+|...|..++|.++...+
T Consensus       177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1113344566666666666666666654  22333444555566666666666666555444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.99  E-value=0.049  Score=58.44  Aligned_cols=142  Identities=16%  Similarity=0.066  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 006012          472 EPDTITWNTLIDCHFKCG-----RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ--------ERWEDVKRLLGNMRA  538 (664)
Q Consensus       472 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------g~~~~a~~~~~~m~~  538 (664)
                      +.+...|...+.+.....     ..++|..+|++.++.+ +-....|..+..++...        .++..+.+...+...
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            344455555555433211     2445666666666554 22233333332222111        122334444444333


Q ss_pred             C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          539 Q-GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM  617 (664)
Q Consensus       539 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  617 (664)
                      . ....++..|.++.-.....|++++|...++           +...  +.|+...|..+...+...|+.++|.+.+++.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~-----------rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAIN-----------KAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHH-----------HHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2 123355677777666666788877776643           3333  3467778888888888888888888888888


Q ss_pred             HHCCCCCCHHHH
Q 006012          618 KENGLKPDVVTY  629 (664)
Q Consensus       618 ~~~g~~p~~~~~  629 (664)
                      ..  +.|...+|
T Consensus       480 ~~--L~P~~pt~  489 (517)
T PRK10153        480 FN--LRPGENTL  489 (517)
T ss_pred             Hh--cCCCCchH
Confidence            77  45554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.98  E-value=0.03  Score=57.40  Aligned_cols=92  Identities=17%  Similarity=0.043  Sum_probs=72.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL  351 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  351 (664)
                      ...+...|++++|++.|+++++.. +.+...|..+..++.+.|++++|+..++++++... .+...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence            344567788999999998888764 44677888888888888999999998888887543 2567788888888888999


Q ss_pred             HHHHHHHHHHHHCC
Q 006012          352 KDAEFVVSEMERSG  365 (664)
Q Consensus       352 ~~a~~~~~~m~~~g  365 (664)
                      ++|...|++..+..
T Consensus        87 ~eA~~~~~~al~l~  100 (356)
T PLN03088         87 QTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99998888888764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.48  Score=47.42  Aligned_cols=57  Identities=18%  Similarity=0.074  Sum_probs=39.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE  328 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  328 (664)
                      ....+.+..++.+|+..+..+.+.. +.+..-|..-...+...|++++|.--.+.-.+
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r  111 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR  111 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence            3445677788888888888888765 33456666677777777888877766655443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.93  E-value=0.002  Score=50.51  Aligned_cols=18  Identities=17%  Similarity=0.213  Sum_probs=7.0

Q ss_pred             HHHHHHhcCChHHHHHHH
Q 006012          306 VITALSNSGRTIEAEAVF  323 (664)
Q Consensus       306 li~~~~~~g~~~~A~~l~  323 (664)
                      +..++.+.|++++|.+++
T Consensus        31 la~~~~~~~~y~~A~~~~   48 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELL   48 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH
Confidence            333333333333333333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.92  E-value=0.0021  Score=50.34  Aligned_cols=20  Identities=40%  Similarity=0.865  Sum_probs=8.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 006012          481 LIDCHFKCGRYDRAEELFEE  500 (664)
Q Consensus       481 li~~~~~~g~~~~A~~~~~~  500 (664)
                      +..+|.+.|++++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            33344444444444444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.9  Score=49.04  Aligned_cols=108  Identities=17%  Similarity=0.320  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          477 TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG  556 (664)
Q Consensus       477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  556 (664)
                      +.+--+.-+...|+-.+|.++-.+..    .||...|-.-+.+++..++|++.+++-+.+.      .+.-|.-.+.+|.
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~  755 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL  755 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence            34444455666788888877766553    4677777778888888888888777665543      2455667788888


Q ss_pred             hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVL  614 (664)
Q Consensus       557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  614 (664)
                      +.|+.++|.+++..                + ++   +.-.+.+|.+.|++.+|.++-
T Consensus       756 ~~~n~~EA~KYipr----------------v-~~---l~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  756 KQGNKDEAKKYIPR----------------V-GG---LQEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             hcccHHHHhhhhhc----------------c-CC---hHHHHHHHHHhccHHHHHHHH
Confidence            88888888777431                1 11   115667777888888877753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.85  E-value=0.17  Score=50.14  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=38.1

Q ss_pred             HHHhc-CChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHH
Q 006012          309 ALSNS-GRTIEAEAVFEELKE----SGLKP-RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLP-----DEH-TYSLL  376 (664)
Q Consensus       309 ~~~~~-g~~~~A~~l~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~-~~~~l  376 (664)
                      .|-.. |++++|.+.|++..+    .+.+- -..++..+...+.+.|++++|.++|+++...-...     +.. .+-..
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a  202 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA  202 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence            34444 555666555555433    11000 12234445555666666666666666655432211     111 11122


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 006012          377 IDAYANAGRWESARIVLKEMEV  398 (664)
Q Consensus       377 i~~~~~~g~~~~A~~l~~~m~~  398 (664)
                      +-++...|+...|.+.+++...
T Consensus       203 ~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  203 ILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            2234445556666666555543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.75  E-value=0.017  Score=55.02  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=54.5

Q ss_pred             hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK  530 (664)
Q Consensus       451 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~  530 (664)
                      .+.+++++|...|.+.++.. +.|.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|.
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence            44555666666666665543 2345555555666666666666666666655554 333455666666666666666666


Q ss_pred             HHHHHHHHCCCCCCHHHHH
Q 006012          531 RLLGNMRAQGLLPNVVTYT  549 (664)
Q Consensus       531 ~~~~~m~~~~~~p~~~~~~  549 (664)
                      +.|++.++  +.|+-.+|-
T Consensus       170 ~aykKaLe--ldP~Ne~~K  186 (304)
T KOG0553|consen  170 EAYKKALE--LDPDNESYK  186 (304)
T ss_pred             HHHHhhhc--cCCCcHHHH
Confidence            66666555  445544443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.74  E-value=0.3  Score=43.31  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006012          472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PNVVTYTT  550 (664)
Q Consensus       472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~  550 (664)
                      .|++..--.|..+....|++.+|...|++...--+.-|......+.++....+++..|...++++.+.+.. -++.+...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            34444444555555555555555555555544433444555555555555555555555555555443210 01122233


Q ss_pred             HHHHHHhcCChHHHHHH
Q 006012          551 LVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       551 li~~~~~~g~~~~A~~~  567 (664)
                      +...|...|++.+|...
T Consensus       166 ~aR~laa~g~~a~Aesa  182 (251)
T COG4700         166 FARTLAAQGKYADAESA  182 (251)
T ss_pred             HHHHHHhcCCchhHHHH
Confidence            44455555555544443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.70  E-value=0.2  Score=52.72  Aligned_cols=53  Identities=23%  Similarity=0.216  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQE  503 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  503 (664)
                      +...+...+-+...+.-|-++|..|-+         ...+++.....+++++|+.+-++..+
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence            333333344444455555566655532         12344555556666666666555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.60  E-value=1  Score=45.82  Aligned_cols=365  Identities=14%  Similarity=0.127  Sum_probs=193.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhC--CCC------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHH
Q 006012          275 FAKAGDASKAMRFLGMAQGV--GLS------------PKTATYAAVITALSNSGRTIEAEAVFEELKESG----LKPRTK  336 (664)
Q Consensus       275 ~~~~g~~~~A~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~  336 (664)
                      +.+.+++++|++.+..-...  +..            +|..-=+..++.+...|++.+++.++++|...=    ...+..
T Consensus        89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d  168 (549)
T PF07079_consen   89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD  168 (549)
T ss_pred             HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence            34667777777776544332  211            122223456677888888888888888876533    336778


Q ss_pred             HHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 006012          337 AYNALLKGYVKMGY---------------LKDAEFVVSEMERS------GVLPDEHTYSLLIDAYANA--GRWESARIVL  393 (664)
Q Consensus       337 ~~~~li~~~~~~g~---------------~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~l~  393 (664)
                      +||.++-.+.++=-               ++.+.-..++|...      .+.|.......++....-.  .+..--.+++
T Consensus       169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l  248 (549)
T PF07079_consen  169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL  248 (549)
T ss_pred             HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence            88876666655311               11122222222211      1222222233333322211  1222233444


Q ss_pred             HHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012          394 KEMEVSHAKPNSF-IYSRILAGYRDRGEWQRTFQVLKEMKSSGVE----PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS  468 (664)
Q Consensus       394 ~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  468 (664)
                      +.....-+.|+.. +...+...+.+  +.+++..+.+.+....+.    --..++..++....+.++...|.+.+..+.-
T Consensus       249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            4444444455533 23334444443  455555555554332211    1245677788888888999999888887765


Q ss_pred             CCCCCCHHHH-------HHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHH
Q 006012          469 EGIEPDTITW-------NTLIDCHF----KCGRYDRAEELFEEMQERGYFPCTTTYNIMIN---LLGEQER-WEDVKRLL  533 (664)
Q Consensus       469 ~g~~~~~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~---~~~~~g~-~~~a~~~~  533 (664)
                      ..  |+...-       ..+-+..|    ..-+..+=+.+|++....++. .......++.   -+-+.|. -++|..++
T Consensus       327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLL  403 (549)
T PF07079_consen  327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLL  403 (549)
T ss_pred             cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            42  332211       11222222    112233445566666655421 1222233333   2334455 78899999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCH
Q 006012          534 GNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL----ALNSLINA--FGEDQRD  607 (664)
Q Consensus       534 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~--~~~~g~~  607 (664)
                      +.+.+.  .+...-.-..+.-+.|. .+..|+..  ....+-+.+-+-+.+.|+.|-.+    .-|.|.+|  +...|++
T Consensus       404 k~il~f--t~yD~ec~n~v~~fvKq-~Y~qaLs~--~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey  478 (549)
T PF07079_consen  404 KLILQF--TNYDIECENIVFLFVKQ-AYKQALSM--HAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY  478 (549)
T ss_pred             HHHHHh--ccccHHHHHHHHHHHHH-HHHHHHhh--hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence            888874  33222222222222222 12222221  12222223333444567776433    34455433  4678999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006012          608 AEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLF  651 (664)
Q Consensus       608 ~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~  651 (664)
                      .++.-+-....+  +.|++.+|..++-++....+++||+.++..
T Consensus       479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            999888777776  899999999999999999999999998873

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.51  E-value=0.0099  Score=44.17  Aligned_cols=52  Identities=23%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      +.|++++|++.|+.+.... +-+...+..+..+|.+.|++++|.++++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455555555555555432 224455555555555555555555555555543

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.3  Score=48.85  Aligned_cols=224  Identities=13%  Similarity=0.033  Sum_probs=111.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012          308 TALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE  387 (664)
Q Consensus       308 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  387 (664)
                      ..+.+..++.+|+..+...++.... +..-|..=...+...|+++++.--.+.-.+.... ....+.-.-.++...++..
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence            4566778888899999888876543 4555555555666666666665554443332100 1112222222222333333


Q ss_pred             HHHHHHH------------H---HHhcC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 006012          388 SARIVLK------------E---MEVSH-AKPNSFIYSRI-LAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID--  448 (664)
Q Consensus       388 ~A~~l~~------------~---m~~~~-~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--  448 (664)
                      +|...++            .   ..... -+|...+|..+ ..++...|++++|.+.-....+..   ....+...++  
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~  211 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL  211 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence            3333322            1   11111 12223333333 234555677777776665555432   1122233333  


Q ss_pred             HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHH----------HHHcCCHHHHHHHHHHHHHC---CCCCCHHH
Q 006012          449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNT---LIDC----------HFKCGRYDRAEELFEEMQER---GYFPCTTT  512 (664)
Q Consensus       449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---li~~----------~~~~g~~~~A~~~~~~m~~~---~~~p~~~t  512 (664)
                      ++.-.++.+.+...|++.++.+  |+...-..   ....          ..+.|.+.+|.+.|.+.+..   +..|+...
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence            2334566777777777776653  33222111   1111          23456666666666666543   33444555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          513 YNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       513 ~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      |.....+..+.|+.++|+.-.++..+
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~  315 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALK  315 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhh
Confidence            55555556666666666666665554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.47  E-value=0.38  Score=50.70  Aligned_cols=94  Identities=19%  Similarity=0.258  Sum_probs=50.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCC
Q 006012          298 PKTATYAAVITALSNSGRTIEAEAVF---------EELKESGLKPRTKAYNALLKGYVKMGYL--KDAEFVVSEMERSGV  366 (664)
Q Consensus       298 ~~~~~~~~li~~~~~~g~~~~A~~l~---------~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~  366 (664)
                      +-.+.+.+-+..|...|.+++|.++-         +.+....  .+.-.++..=.+|.+..+.  -+...-++++.++|-
T Consensus       554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge  631 (1081)
T KOG1538|consen  554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGE  631 (1081)
T ss_pred             cccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence            33444555555666667666665431         1111110  1223344555566655543  344445566777777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          367 LPDEHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       367 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      .|+...   +...++-.|++.+|-++|.+-
T Consensus       632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  632 TPNDLL---LADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             CchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence            677654   344566677777777777653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.46  E-value=1.6  Score=46.61  Aligned_cols=52  Identities=15%  Similarity=0.099  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 006012          513 YNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPNVVTYTTLVDIYGQSGRFDDA  564 (664)
Q Consensus       513 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A  564 (664)
                      |..|..--...|..+.|.+.--.+.+. ++-|...+|+.|.-+-|....+.-.
T Consensus      1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtC 1076 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTC 1076 (1189)
T ss_pred             HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhh
Confidence            334444445567777777655444443 5667778887776665555444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.45  E-value=0.016  Score=42.60  Aligned_cols=57  Identities=21%  Similarity=0.170  Sum_probs=40.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      ...+.+.|++++|.+.|+.+.+.. +-+...+..+..++.+.|++++|...|+++.+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455667777777777777777764 335667777777777777777777777777654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.45  E-value=0.2  Score=41.92  Aligned_cols=90  Identities=23%  Similarity=0.144  Sum_probs=50.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhc
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNALLKGYVKM  348 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~li~~~~~~  348 (664)
                      .++-..|+.++|+.+|++....|+...  ...+..+...+...|++++|..++++.......  .+......+..++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence            345556777777777777776665443  334555666667777777777777666553211  0111122233355566


Q ss_pred             CCHHHHHHHHHHHH
Q 006012          349 GYLKDAEFVVSEME  362 (664)
Q Consensus       349 g~~~~a~~~~~~m~  362 (664)
                      |+.++|.+.+-...
T Consensus        89 gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   89 GRPKEALEWLLEAL  102 (120)
T ss_pred             CCHHHHHHHHHHHH
Confidence            66666666655444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.33  Score=45.48  Aligned_cols=143  Identities=11%  Similarity=0.047  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLI----  482 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li----  482 (664)
                      +.+.++.++.-.|++.-....+++.++...+.++.....+...-.+.|+.+.|...|++..+..-..+....+.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3445566666677777777777777776656677777888888888888888888888776543333433333333    


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          483 -DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV  552 (664)
Q Consensus       483 -~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  552 (664)
                       ..|.-.+++..|...+.++...+ .-+....|.-.-+..-.|+...|.+.+..|...  .|.+.+-++++
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~  326 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL  326 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence             34555677888888888887776 345555555554555678888888888888875  45555444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.39  E-value=0.015  Score=43.28  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-RTIEAEAVFEELKE  328 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~  328 (664)
                      ..+|..+...+...|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.+++.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4456666666666677777777666666643 234556666666666666 56666666666554

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.38  E-value=0.016  Score=43.09  Aligned_cols=53  Identities=21%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      .+.|++++|+++|+.+...... +...+..+..+|.+.|++++|.++++.+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456666666666666654332 5555556666666666666666666666654

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.47  Score=45.78  Aligned_cols=101  Identities=15%  Similarity=0.055  Sum_probs=62.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG---RTIEAEAVFEELKESGLKPRTKAY  338 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~  338 (664)
                      +-|..-|-.|...|...|+++.|...|....+.. .++...+..+..++....   ...++.++|+++.+... -|+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence            5566777777777777777777777777766643 345555555555544332   24566666766665432 255555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          339 NALLKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       339 ~~li~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      ..|...+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            55666666667777777777776665

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.29  E-value=0.019  Score=42.76  Aligned_cols=63  Identities=19%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006012          475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE-RWEDVKRLLGNMRA  538 (664)
Q Consensus       475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~  538 (664)
                      ...|..+...+.+.|++++|+..|++.++.+ +.+...|..+..++...| ++++|.+.+++.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3445555555556666666666666655554 334555555555555555 45566655555544

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.26  E-value=0.019  Score=42.24  Aligned_cols=55  Identities=16%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      ..+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|...++++++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555555566666665555554 33445555555555555666665555555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.23  E-value=0.44  Score=44.49  Aligned_cols=80  Identities=11%  Similarity=0.071  Sum_probs=40.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhc
Q 006012          481 LIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQS  558 (664)
Q Consensus       481 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~  558 (664)
                      ++.-|=......+|...+..+.+.=    ...-..+.+-|.+.|.+..|..-++.+++.  +..-.......++.+|.+.
T Consensus       116 li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l  191 (203)
T PF13525_consen  116 LIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL  191 (203)
T ss_dssp             HHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            3333434444555555444443320    111122455677777777777777777765  1111134456667777777


Q ss_pred             CChHHH
Q 006012          559 GRFDDA  564 (664)
Q Consensus       559 g~~~~A  564 (664)
                      |..+.|
T Consensus       192 ~~~~~a  197 (203)
T PF13525_consen  192 GLKQAA  197 (203)
T ss_dssp             T-HHHH
T ss_pred             CChHHH
Confidence            776644

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.19  E-value=0.31  Score=40.78  Aligned_cols=87  Identities=20%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 006012          482 IDCHFKCGRYDRAEELFEEMQERGYFPC--TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL--PNVVTYTTLVDIYGQ  557 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~  557 (664)
                      ..++-..|+.++|+.+|++....|....  ...+..+...+...|++++|..++++.......  -+......+..++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            3445566777777777777777664433  234445556667777777777777777654211  011222223345666


Q ss_pred             cCChHHHHHHH
Q 006012          558 SGRFDDAIECL  568 (664)
Q Consensus       558 ~g~~~~A~~~~  568 (664)
                      .|+.++|++.+
T Consensus        88 ~gr~~eAl~~~   98 (120)
T PF12688_consen   88 LGRPKEALEWL   98 (120)
T ss_pred             CCCHHHHHHHH
Confidence            77777776654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.09  E-value=2  Score=43.84  Aligned_cols=216  Identities=15%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             hhHHHHHHhhhcCCChhhHHHHHHHH-hcCCCChHHHHHHHHHHHHc--CCC-----------CchHHHHHHHHHHHccc
Q 006012          111 NRVEFKLAESYRAVPAPLWHSLLKNL-CSSNSSIDLAYAVVSWLQKH--NLC-----------YSYELLYSILIHALGRS  176 (664)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~a~~~~~~~~~~--~~~-----------~~~~~~~~~li~~~~~~  176 (664)
                      +..+..+.+-.+..+.+.|..+...+ +...+.++.|.+.+..-.++  +..           .++-++-++.++.+...
T Consensus        62 d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~  141 (549)
T PF07079_consen   62 DLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET  141 (549)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc
Confidence            44444444444445566777766654 45677888888877654443  111           22334557778899999


Q ss_pred             CCHHHHHHh---------hCCCCCCHHHHHHHHHHHHHc-------C--------CHHHHHHHHHHHHHc------CCCC
Q 006012          177 EKLYEAFLL---------SQRQRLTPLTYNALISACARN-------D--------DLEKALNLMSKMRQD------GYHC  226 (664)
Q Consensus       177 ~~~~~A~~~---------~~~~~~~~~~~~~li~~~~~~-------g--------~~~~A~~~~~~m~~~------g~~p  226 (664)
                      |++.+++.+         .+....+..+||.++-.+.|+       +        -++.++-...+|...      .+.|
T Consensus       142 g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~p  221 (549)
T PF07079_consen  142 GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIP  221 (549)
T ss_pred             CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCc
Confidence            999998876         222346778888754444332       1        123333333333322      1233


Q ss_pred             ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHH
Q 006012          227 DFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQ-LLNDVIVGFAKAGDASKAMRFLGMAQGVGLS----PKTA  301 (664)
Q Consensus       227 ~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~  301 (664)
                      .......++..+.-...-......++++.....-+.|+-. +...|+..+.+  +.+++..+.+.+....+.    .=..
T Consensus       222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~  299 (549)
T PF07079_consen  222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID  299 (549)
T ss_pred             HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3333334443333222111111234444444444444432 22333333333  444444444433322111    1234


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012          302 TYAAVITALSNSGRTIEAEAVFEELKE  328 (664)
Q Consensus       302 ~~~~li~~~~~~g~~~~A~~l~~~m~~  328 (664)
                      ++..++...++.++...|.+.+.-+.-
T Consensus       300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  300 RFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            566666666666666666666655543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.07  E-value=0.98  Score=40.19  Aligned_cols=127  Identities=15%  Similarity=0.228  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 006012          437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG---YFPCTTTY  513 (664)
Q Consensus       437 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~  513 (664)
                      .|++..-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+..   -.||  +.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence            577777777888888888888888888888765455677777778888888888888888888887653   2333  44


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       514 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      ..+.+.+...|+..+|+.-|+.....  -|+...-......+.+.|+.++|..-
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence            56678888889999999999888875  56666656667778888888877654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.07  E-value=2  Score=43.64  Aligned_cols=171  Identities=9%  Similarity=0.018  Sum_probs=87.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          445 VMIDTFGKYNCLHHAMAAFDRMLSEG---IEPDTITWNTLIDCHFK---CGRYDRAEELFEEMQERGYFPCTTTYNIMIN  518 (664)
Q Consensus       445 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  518 (664)
                      .++-+|....+++...++.+.+....   +.-....--...-++.+   .|+.++|++++..+....-.++..+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            33444556666666666666665431   00011111122234444   6667777777766554444666666666665


Q ss_pred             HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCC--
Q 006012          519 LLGE---------QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGL--  587 (664)
Q Consensus       519 ~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~--  587 (664)
                      .|-.         ....++|...+.+.-+.  .||...--.++-.+...|...+...-++.   -++.+-....++|.  
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~---i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRK---IGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHH---HHHHHHHHHHhhcccc
Confidence            5532         12366777777766553  34433222222233333432222111111   01111111222232  


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          588 -KPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       588 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                       ..+-..+.+++.++.-.|+.++|.+..++|...
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             233345578889999999999999999999974

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=1.3  Score=41.64  Aligned_cols=132  Identities=11%  Similarity=0.039  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HH
Q 006012          302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS-----LL  376 (664)
Q Consensus       302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-----~l  376 (664)
                      ..+.++..+.-.|.+.-..+++.+.++...+-+......|++.-.+.||.+.|...|++..+..-+.|..+.+     ..
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3456666666777777777778777776656677777777777778888888888887766543233333332     33


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          377 IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS  434 (664)
Q Consensus       377 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  434 (664)
                      ...|.-++++.+|...+.++...+ +.+....|.-.-+..-.|+..+|++.++.|.+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334555666667777776665543 233444444333444456666677666666654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.03  E-value=0.9  Score=42.38  Aligned_cols=49  Identities=12%  Similarity=0.052  Sum_probs=27.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          481 LIDCHFKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDV  529 (664)
Q Consensus       481 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a  529 (664)
                      +..-|.+.|.+..|..-++.+++.=  ..-.......++.++.+.|..+.+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            4456777777777777777777651  111123345566667777766643

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.02  E-value=0.066  Score=45.25  Aligned_cols=55  Identities=13%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 006012          585 DGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE-NGLKPDVVTYTTLMKALIRV  639 (664)
Q Consensus       585 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~a~~~~  639 (664)
                      ..+.|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|+.=....
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999987 68888999999999844443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.46  Score=45.80  Aligned_cols=102  Identities=12%  Similarity=0.037  Sum_probs=71.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG---YLKDAEFVVSEMERSGVLPDEHTY  373 (664)
Q Consensus       297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~  373 (664)
                      +-|...|-.|...|...|+...|...|.+..+.. .++...+..+..++....   +..++..+|+++.+.... |+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence            4577888888888888888888888888877642 225555555555544332   356777888888776433 66667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012          374 SLLIDAYANAGRWESARIVLKEMEVSH  400 (664)
Q Consensus       374 ~~li~~~~~~g~~~~A~~l~~~m~~~~  400 (664)
                      ..|...+...|++.+|...++.|.+..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            777777778888888888888887653

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.97  E-value=2  Score=42.98  Aligned_cols=109  Identities=19%  Similarity=0.296  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012          337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR  416 (664)
Q Consensus       337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~  416 (664)
                      +.+..|.-+...|+...|.++-.+..    .||...|...+.+|+..++|++-.++-..      +-++.-|-..+.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            44555666777788777777766653    36778888888888888888876665332      224467778888888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006012          417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR  465 (664)
Q Consensus       417 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  465 (664)
                      +.|...+|..+...+      +    +..-+..|.++|++.+|.+.--+
T Consensus       249 ~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence            888888887776662      1    24456777888888887766443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.80  E-value=0.18  Score=48.91  Aligned_cols=97  Identities=13%  Similarity=-0.011  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYN  339 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~  339 (664)
                      ..|+..+..+.+.|++++|...|+.+.+.-  |+    ...+..+...|...|++++|...|+.+.+.-..  .....+-
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            345555555566678888888888777642  33    246667777777788888888888777753211  1233444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      .+...+...|+.++|..+++.+.+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555666777777777777777665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.66  E-value=0.075  Score=46.62  Aligned_cols=70  Identities=20%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTY  548 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~  548 (664)
                      ...++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|.+.++++.+     .|+.|+..+-
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            4445556666677777777777776665 55666677777777777777777766665542     3666665543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.63  E-value=0.16  Score=44.44  Aligned_cols=82  Identities=13%  Similarity=0.053  Sum_probs=50.9

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI  565 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  565 (664)
                      -..|++++|..+|+-+...+ .-+..-|..|..++-..+++++|...+......+. -|+..+-....+|...|+.+.|+
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence            45677777777777666554 23444455556666666777777777766655433 24444555667777777777777


Q ss_pred             HHHh
Q 006012          566 ECLE  569 (664)
Q Consensus       566 ~~~~  569 (664)
                      ..|+
T Consensus       126 ~~f~  129 (165)
T PRK15331        126 QCFE  129 (165)
T ss_pred             HHHH
Confidence            6654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.60  E-value=0.055  Score=41.42  Aligned_cols=69  Identities=23%  Similarity=0.335  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ..+++.+...|...|++++|+..++.    |+++.+.+..  -.|+ ..++..+..+|...|++++|++++++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~----al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEK----ALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHH----HHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35678888999999999999988763    3333222211  1123 45788999999999999999999998765

...

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.47  E-value=0.36  Score=45.73  Aligned_cols=107  Identities=13%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             CCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC
Q 006012          188 RQRLTPLTYNALISACARN-----DDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE  262 (664)
Q Consensus       188 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~  262 (664)
                      ...+|-.+|-+++..+...     +.++=.-..++.|.+.|+.-|..+|+.+|+.+-+.......+.+++|-...     
T Consensus        62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP-----  136 (406)
T KOG3941|consen   62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP-----  136 (406)
T ss_pred             cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc-----
Confidence            3355667777777766543     445555556677777777777777777776665544433222222222211     


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR  315 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  315 (664)
                                      .+-+-++.++++|...|+.||..+-..+++++.+.+-
T Consensus       137 ----------------~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  137 ----------------QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             ----------------hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                            1223455666666666666666666666666665554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.47  E-value=0.32  Score=47.22  Aligned_cols=25  Identities=4%  Similarity=-0.094  Sum_probs=10.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          408 YSRILAGYRDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~m~  432 (664)
                      +..+...|...|++++|...|..+.
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv  207 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVV  207 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444444444444444444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.47  E-value=0.069  Score=40.89  Aligned_cols=59  Identities=24%  Similarity=0.300  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          592 LALNSLINAFGEDQRDAEAFAVLQYMKEN--GLK---PD-VVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      .+|+.+...|...|++++|+.++++..+.  .+.   |+ ..++..+..++.+.|++++|++.++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~   70 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ   70 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            47889999999999999999999999852  122   22 4678899999999999999999998

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.43  E-value=0.1  Score=45.78  Aligned_cols=124  Identities=25%  Similarity=0.375  Sum_probs=73.3

Q ss_pred             HHHHHHHHH---HHHHcCCHHHHHHHHHHHHHc--C-CCCChhh--HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCC
Q 006012          193 PLTYNALIS---ACARNDDLEKALNLMSKMRQD--G-YHCDFIN--YSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELD  264 (664)
Q Consensus       193 ~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~--g-~~p~~~~--~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d  264 (664)
                      ...|..++.   .....++.+.+++.+.++...  | +-++...  |..-..              .-+....       
T Consensus         3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r--------------~~l~~~~-------   61 (146)
T PF03704_consen    3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPER--------------ERLRELY-------   61 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHH--------------HHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHH--------------HHHHHHH-------
Confidence            334445533   345678889999988888764  2 2223221  211111              1111111       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE-----SGLKPRTKAY  338 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~  338 (664)
                      ......++..+...|++++|.++.+.+.... +-+...|..+|.++...|+..+|.+.|+.+.+     .|+.|+..+-
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            1244567777888899999999988888764 45778888889999999999999888887743     4777766543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.39  E-value=5.1  Score=43.56  Aligned_cols=320  Identities=15%  Similarity=0.130  Sum_probs=173.0

Q ss_pred             hCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC
Q 006012          293 GVGLSPKTATYA-----AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY---LKDAEFVVSEMERS  364 (664)
Q Consensus       293 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~  364 (664)
                      ..|++.+..-|.     .+|+-+...+.+..|.++-..+...-..- ...|.....-+.+..+   -+.+..+-+++...
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            345555544444     34666677777788887777665432221 4555556665655532   22222222333221


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 006012          365 GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA----KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG-----  435 (664)
Q Consensus       365 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----  435 (664)
                       . .....|..+..-.-..|+.+-|..+++.=...+.    -.+..-+...+.-+.+.|+.+-...++-++.+.-     
T Consensus       504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l  581 (829)
T KOG2280|consen  504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL  581 (829)
T ss_pred             -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence             2 3445666677666778888888777664221110    0112233444555666677766666666554421     


Q ss_pred             ------CCCCHHHHHHHHH--------HHhccCCHHHHHHHHHH-H-H----HCCCCCCHHHHHHHHHHHHHcCC-----
Q 006012          436 ------VEPDTHFYNVMID--------TFGKYNCLHHAMAAFDR-M-L----SEGIEPDTITWNTLIDCHFKCGR-----  490 (664)
Q Consensus       436 ------~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~~-m-~----~~g~~~~~~~~~~li~~~~~~g~-----  490 (664)
                            .+.....|.-++.        .+...++-.++...|.. - .    ..|..|+   ......++.+...     
T Consensus       582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~  658 (829)
T KOG2280|consen  582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA  658 (829)
T ss_pred             HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence                  0111112221111        01111121222221111 0 0    0122222   2223334443332     


Q ss_pred             -----HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012          491 -----YDRAEELFEEMQER-GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA  564 (664)
Q Consensus       491 -----~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  564 (664)
                           ..+-+++.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+.+    .||...|-.-+.+++..+++++-
T Consensus       659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL  734 (829)
T KOG2280|consen  659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL  734 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence                 12222333333322 323334455666777788899999988877664    47889999999999999998875


Q ss_pred             HHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006012          565 IECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHK  644 (664)
Q Consensus       565 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~  644 (664)
                      .++               .+.  +.++.-|.-.+.+|.+.|+.+||.+++-+.-.     .    .-.+.+|.+.|++.+
T Consensus       735 ekf---------------Aks--kksPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~e  788 (829)
T KOG2280|consen  735 EKF---------------AKS--KKSPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKE  788 (829)
T ss_pred             HHH---------------Hhc--cCCCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHH
Confidence            443               111  22356688889999999999999998775522     1    157889999999998


Q ss_pred             HHHH
Q 006012          645 VFSS  648 (664)
Q Consensus       645 A~~~  648 (664)
                      |.+.
T Consensus       789 Aad~  792 (829)
T KOG2280|consen  789 AADL  792 (829)
T ss_pred             HHHH
Confidence            8764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.33  E-value=0.12  Score=38.81  Aligned_cols=55  Identities=16%  Similarity=0.068  Sum_probs=29.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          484 CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       484 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      .|.+.+++++|.++++++...+ +.+...|......+.+.|++++|.+.++...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3455555555555555555544 334444555555555555555555555555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.22  E-value=3.8  Score=41.01  Aligned_cols=278  Identities=14%  Similarity=0.105  Sum_probs=157.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          278 AGDASKAMRFLGMAQGVGLSPKTATYAAVITA--LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE  355 (664)
Q Consensus       278 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  355 (664)
                      .|+-..|.++-.+..+. +.-|......++.+  -.-.|+++.|.+-|+.|... .+...-....|.-.--+.|+.+.|.
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence            36666666655443321 23344444444433  33468888888888888752 0101112223333334667777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHH
Q 006012          356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH-AKPNSFI--YSRILAGYR---DRGEWQRTFQVLK  429 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~--~~~ll~~~~---~~g~~~~a~~~~~  429 (664)
                      ..-+..-..-.. -...+.+.+...|..|+|+.|+++++.-.... +.++..-  -..|+.+-.   -..+...|...-.
T Consensus       175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~  253 (531)
T COG3898         175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL  253 (531)
T ss_pred             HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            777776654322 34667778888888888888888888765533 2333321  112222211   1124445555444


Q ss_pred             HHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC-
Q 006012          430 EMKSSGVEPDTHFY-NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER-GY-  506 (664)
Q Consensus       430 ~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-  506 (664)
                      +..+.  .||.+-- ..-..++.+.|++.++-.+++.+-+....|+  .+    ..|.+...-|.+++-+++..+. .+ 
T Consensus       254 ~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~L~slk  325 (531)
T COG3898         254 EANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKKLESLK  325 (531)
T ss_pred             HHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence            44433  4543322 2334577888999999999999888754443  32    2333333334444444444321 11 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHH
Q 006012          507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ-SGRFDDAIECL  568 (664)
Q Consensus       507 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~  568 (664)
                      +.+......+..+....|++..|..--+...+  ..|....|..|.+.-.. .|+-.++...+
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl  386 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL  386 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence            33566677777888888888887776666655  46778888877776544 47777776654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.22  E-value=0.092  Score=39.51  Aligned_cols=56  Identities=20%  Similarity=0.131  Sum_probs=37.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      ..|.+.+++++|+++++.+...+ +.+...|.....++.+.|++.+|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45666677777777777776654 335566666667777777777777777776654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.14  E-value=0.37  Score=40.75  Aligned_cols=56  Identities=7%  Similarity=0.051  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 006012          505 GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPNVVTYTTLVDIYGQSGR  560 (664)
Q Consensus       505 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~  560 (664)
                      ...|+..+..+++.+|+..+++..|.++++...+. +++.+..+|..|+.-....-+
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            45688888888888888888888888888888765 777778888888876554443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.09  E-value=4.6  Score=41.22  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006012          148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQR---QRLTPLTYNALISACARNDDLEKALNLMSKMRQDG  223 (664)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  223 (664)
                      ++-+++.+ +  |.+...|-.||.-|...|+.++-++. .+.   .+-=+.+|..-+++=...++++....+|.+.....
T Consensus        30 rLRerIkd-N--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~  106 (660)
T COG5107          30 RLRERIKD-N--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS  106 (660)
T ss_pred             HHHHHhhc-C--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence            55555543 3  67778888999999999988887776 222   22234588888888888888888888888887764


Q ss_pred             CCCChhhHHHHHHHHHhc
Q 006012          224 YHCDFINYSLVIQSLTRT  241 (664)
Q Consensus       224 ~~p~~~~~~~ll~~~~~~  241 (664)
                        .+...|..-+.-..+.
T Consensus       107 --l~ldLW~lYl~YIRr~  122 (660)
T COG5107         107 --LNLDLWMLYLEYIRRV  122 (660)
T ss_pred             --ccHhHHHHHHHHHHhh
Confidence              3455566555544443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.81  E-value=5.3  Score=40.59  Aligned_cols=172  Identities=15%  Similarity=0.099  Sum_probs=84.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMERSG---VLPDEHTYSLLIDAYAN---AGRWESARIVLKEMEVSHAKPNSFIYSRILA  413 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~  413 (664)
                      .++-.|....+++...++++.+....   +.-....-....-++.+   .|+.++|++++..+......++..+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            44445666677777777777776541   11112222233344445   6677777777766544444566666655555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HH
Q 006012          414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR-YD  492 (664)
Q Consensus       414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~  492 (664)
                      .|-+.         |   .+.+ .-|..             ..++|...|.+.-+.  .++..+--.+...+...|. .+
T Consensus       226 IyKD~---------~---~~s~-~~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~  277 (374)
T PF13281_consen  226 IYKDL---------F---LESN-FTDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE  277 (374)
T ss_pred             HHHHH---------H---HHcC-ccchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence            44221         0   0000 01111             144555555544432  1332221111111222222 11


Q ss_pred             ---HHHHHH---H-HHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          493 ---RAEELF---E-EMQERG---YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       493 ---~A~~~~---~-~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                         +..++-   . .+.++|   -..+.-.+..++.++.-.|+.++|.+..++|.+.
T Consensus       278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence               112221   1 111222   2345566677888888889999999999888875

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.76  E-value=2.4  Score=36.70  Aligned_cols=40  Identities=13%  Similarity=0.077  Sum_probs=16.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012          307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK  347 (664)
Q Consensus       307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  347 (664)
                      +..+.+.+........++.+...+. .+...+|.++..|++
T Consensus        14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~   53 (140)
T smart00299       14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence            3333333444444444444443332 233344444444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.74  E-value=2  Score=43.21  Aligned_cols=137  Identities=14%  Similarity=0.047  Sum_probs=91.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006012          201 SACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGD  280 (664)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~  280 (664)
                      +.|.+.|++..|...|++....               +-.....+... .+....       .-..+++.|..+|.+.++
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~---------------l~~~~~~~~ee-~~~~~~-------~k~~~~lNlA~c~lKl~~  272 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSF---------------LEYRRSFDEEE-QKKAEA-------LKLACHLNLAACYLKLKE  272 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHH---------------hhccccCCHHH-HHHHHH-------HHHHHhhHHHHHHHhhhh
Confidence            4678889999999998887652               00001111111 111111       123466778888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHH
Q 006012          281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RTKAYNALLKGYVKMGYL-KDAEFVV  358 (664)
Q Consensus       281 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~-~~a~~~~  358 (664)
                      +.+|++..+..+..+ ++|+....--..++...|+++.|+..|+++.+.  .| |...-+.|+.+--+.... +...++|
T Consensus       273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876 678888888889999999999999999999875  34 444445555544444433 3345667


Q ss_pred             HHHHH
Q 006012          359 SEMER  363 (664)
Q Consensus       359 ~~m~~  363 (664)
                      ..|..
T Consensus       350 ~~mF~  354 (397)
T KOG0543|consen  350 ANMFA  354 (397)
T ss_pred             HHHhh
Confidence            66654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.72  E-value=0.68  Score=47.59  Aligned_cols=66  Identities=18%  Similarity=0.051  Sum_probs=56.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT----TTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       472 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      +.+...|+.+..+|.+.|++++|+..|++.++.+  |+.    .+|..+..+|...|+.++|.+.+++.++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4467788999999999999999999999988875  443    35888999999999999999999999885

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.67  E-value=0.51  Score=48.46  Aligned_cols=66  Identities=11%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      +.+...++.+..+|.+.|++++|+..|++.++.  .|+.    .+|..+..+|.+.|+.++|++.+++.++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556788899999999999999999999998875  4553    45899999999999999999999998874

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.48  E-value=1.1  Score=47.06  Aligned_cols=157  Identities=11%  Similarity=0.063  Sum_probs=74.7

Q ss_pred             HHHHhcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012          308 TALSNSGRTIEAEAVFEE-LKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW  386 (664)
Q Consensus       308 ~~~~~~g~~~~A~~l~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  386 (664)
                      +...-.|+++++.++.+. -.-..+  ...-.+.++..+-+.|..+.|+++.+.-.            .-.+...+.|++
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L  334 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL  334 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence            344456666666666541 111112  23446666666666666666666543321            123445566666


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012          387 ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM  466 (664)
Q Consensus       387 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  466 (664)
                      +.|.++.++.      .+...|..|.....+.|+++-|.+.|.+...         +..|+-.|.-.|+.+...++.+..
T Consensus       335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            6665554332      3455666666666666666666666655321         344444555555555555555555


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          467 LSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE  499 (664)
Q Consensus       467 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  499 (664)
                      ...|-      +|....++...|+.++..+++.
T Consensus       400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  400 EERGD------INIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence            54431      3444444445566555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.43  E-value=2.5  Score=36.54  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE  524 (664)
Q Consensus       445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g  524 (664)
                      .++..+.+.+....+...++.+.+.+ ..+...++.++..|++.+ ..+..+.++.   .   .+......+++.|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence            45555555666777777777776665 356667777777777653 3344444442   1   12233344666666667


Q ss_pred             CHHHHHHHHHHH
Q 006012          525 RWEDVKRLLGNM  536 (664)
Q Consensus       525 ~~~~a~~~~~~m  536 (664)
                      .++++..++.++
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            666666666554

>PRK15331 chaperone protein SicA; Provisional

Probab=94.35  E-value=0.54  Score=41.24  Aligned_cols=88  Identities=8%  Similarity=-0.087  Sum_probs=56.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD  353 (664)
Q Consensus       274 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  353 (664)
                      -+...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|...|......+.. |...+-....++...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence            3456677888887777766543 234555666666666777777777777765543322 33344456677777777777


Q ss_pred             HHHHHHHHHH
Q 006012          354 AEFVVSEMER  363 (664)
Q Consensus       354 a~~~~~~m~~  363 (664)
                      |...|+...+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            7777777665

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.35  E-value=13  Score=42.96  Aligned_cols=81  Identities=12%  Similarity=0.215  Sum_probs=47.4

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI--TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ  523 (664)
Q Consensus       446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~  523 (664)
                      .+.+|-.+|+|.+|..+..++..   ..+..  +-..|+.-+...+++-+|-++..+....        ....+..+++.
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence            35566667777777777766642   11222  2255666677777777777777666543        12234445666


Q ss_pred             CCHHHHHHHHHHHH
Q 006012          524 ERWEDVKRLLGNMR  537 (664)
Q Consensus       524 g~~~~a~~~~~~m~  537 (664)
                      ..|++|.++.....
T Consensus      1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred             hHHHHHHHHHHhcc
Confidence            66677666655443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=94.33  E-value=11  Score=41.96  Aligned_cols=60  Identities=10%  Similarity=0.157  Sum_probs=35.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcC
Q 006012          270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-------TIEAEAVFEELKESG  330 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~~  330 (664)
                      .+|-.|.++|++++|.++...... ........+...+..+....+       -+....-|++..+..
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~  182 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS  182 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence            355667889999999998844433 234455666777777766532       234555566555543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.31  E-value=2.7  Score=35.17  Aligned_cols=58  Identities=16%  Similarity=0.233  Sum_probs=22.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      ++.+.+.|+-|+-.++++++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|
T Consensus        93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            333444444444444444443322 3334444444444444444444444444444444

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.27  E-value=3.7  Score=36.47  Aligned_cols=136  Identities=13%  Similarity=0.242  Sum_probs=86.6

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012          495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ  574 (664)
Q Consensus       495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  574 (664)
                      .++++.+.+.+++|+...+..+++.+.+.|++....+    ++..++-+|.......+-.+..  ....+.+       -
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Q-------l   80 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQ-------L   80 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHH-------H
Confidence            4566667778888888889999999998888765544    4445555665555444433322  2233322       2


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 006012          575 AVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNI  654 (664)
Q Consensus       575 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~  654 (664)
                      |++.++++..        .+..++..+...|++-+|+++.+.....    +...-..++.+..+.+|..-=..+|++|..
T Consensus        81 ~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   81 GLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             HHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4555555442        3666778888899999999988775321    112225677778788877777777776655


Q ss_pred             h
Q 006012          655 Y  655 (664)
Q Consensus       655 ~  655 (664)
                      .
T Consensus       149 ~  149 (167)
T PF07035_consen  149 R  149 (167)
T ss_pred             h
Confidence            3

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.11  E-value=4.2  Score=40.24  Aligned_cols=167  Identities=11%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 006012          477 TWNTLIDCHFKCGRYDRAEELFEEMQER-GYFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRAQG-----LLPNVVT  547 (664)
Q Consensus       477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~  547 (664)
                      .|-.+..++-+..++.+++.+-+.-... |..|   ......++..+....+.++++++.|+...+.-     .-....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            3444455555555555555554443322 2222   12334446667777788888888888776531     1123467


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 006012          548 YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-----SNLALNSLINAFGEDQRDAEAFAVLQYMKE---  619 (664)
Q Consensus       548 ~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---  619 (664)
                      +..|...|....++++|.-+..    +|.++-   ...++.-     .......|.-++...|+..+|.+.-++..+   
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~----kA~~lv---~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPC----KAAELV---NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhH----hHHHHH---HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            8889999999999998876543    222222   2222221     112334556778888999999888887764   


Q ss_pred             -CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          620 -NGLKPD-VVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       620 -~g~~p~-~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                       .|-.+- ......+.+.|...|+.+.|+.-||
T Consensus       238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe  270 (518)
T KOG1941|consen  238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYE  270 (518)
T ss_pred             HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence             343332 2445578889999999999999998

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.08  E-value=3.1  Score=34.88  Aligned_cols=65  Identities=17%  Similarity=0.228  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012          441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY  506 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  506 (664)
                      ......++.+.+.|.-++..+++..+.+.+ .++....-.+..+|.+.|+..++-+++++.-++|+
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            344455566666677777777776666433 45666666666777777777777777777766663

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.05  E-value=0.86  Score=43.28  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          318 EAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       318 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      -+++++++|...|+.||..+-..|+.++.+.+.
T Consensus       141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            345555666666666665555555555555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.86  E-value=1.9  Score=45.41  Aligned_cols=159  Identities=14%  Similarity=0.147  Sum_probs=107.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          272 IVGFAKAGDASKAMRFLGMAQ-GVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      .....-.|+++++.+..+.-. -..+  ...-.+.++..+-+.|..+.|+++-.+-.            .-.....+.|+
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~  333 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN  333 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence            344556799999888775211 1111  25568889999999999999998765432            23455678899


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE  430 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  430 (664)
                      ++.|.++.++.      .+...|..|.+...+.|+++-|.+.|++...         |..|+-.|.-.|+.+...++.+.
T Consensus       334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence            99998876554      3778999999999999999999999988753         56777788889998888888887


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006012          431 MKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR  465 (664)
Q Consensus       431 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  465 (664)
                      ....|-      ++....++...|++++..+++.+
T Consensus       399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  399 AEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            777652      55556666677888887777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=1.2  Score=44.73  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL  520 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~  520 (664)
                      .+++.+.-++.+.+++..|++.-+..+..+ ++|....-.-..+|...|+++.|+..|+.+++.. +-|...-+.++..-
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK  335 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            344555556666666666666666666554 3455555555566666666666766666666653 22333333333332


Q ss_pred             HhcCCH-HHHHHHHHHHHH
Q 006012          521 GEQERW-EDVKRLLGNMRA  538 (664)
Q Consensus       521 ~~~g~~-~~a~~~~~~m~~  538 (664)
                      -+.... +...++|..|..
T Consensus       336 ~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            233222 223555555543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.62  E-value=8.2  Score=38.22  Aligned_cols=127  Identities=13%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC---
Q 006012          283 KAMRFLGMAQGVGLSPKTATYAAVITALSN--SG----RTIEAEAVFEELKESGL---KPRTKAYNALLKGYVKMGY---  350 (664)
Q Consensus       283 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~l~~~m~~~~~---~p~~~~~~~li~~~~~~g~---  350 (664)
                      +.+++++.|.+.|+..+..+|-+..-....  ..    ....|..+|+.|++...   .++...+..|+..  ..++   
T Consensus        80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~  157 (297)
T PF13170_consen   80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE  157 (297)
T ss_pred             HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence            344566677777776666655553333222  11    24456777777766432   2234444444443  2222   


Q ss_pred             -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012          351 -LKDAEFVVSEMERSGVLPDE--HTYSLLIDAYANAGR--WESARIVLKEMEVSHAKPNSFIYSRI  411 (664)
Q Consensus       351 -~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~~~~l  411 (664)
                       .+.++.+++.+.+.|+..+.  .....++........  ...+.++++.+.+.+++.....|..+
T Consensus       158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence             34555666666665554332  122222222111111  33555566666666655555554433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.55  E-value=3.6  Score=43.87  Aligned_cols=118  Identities=16%  Similarity=0.046  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 006012          278 AGDASKAMRFLGMAQGVGLSPKTATYAA-VITALSNSGRTIEAEAVFEELKESG---LKPRTKAYNALLKGYVKMGYLKD  353 (664)
Q Consensus       278 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~  353 (664)
                      ....+.|.++++.+.+.  -|+..-|.. -.+.+...|++++|.+.|+......   .+.....+--+.-++.-.+++++
T Consensus       246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            35566777777777654  355444433 3455666777777777777654311   11133445556666777788888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHHh
Q 006012          354 AEFVVSEMERSGVLPDEHTYSLLI-DAYANAGRW-------ESARIVLKEMEV  398 (664)
Q Consensus       354 a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~-------~~A~~l~~~m~~  398 (664)
                      |.+.|..+.+..- ....+|.-+. .++...|+.       ++|.++|.+...
T Consensus       324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            8888888876532 2333333332 234455666       778888877643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.32  E-value=7.6  Score=41.49  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=97.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          480 TLIDCHFKCGRYDRAEELFEEMQERG-YFPCT-----TTYNIMINLLGE----QERWEDVKRLLGNMRAQGLLPNVVTYT  549 (664)
Q Consensus       480 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~  549 (664)
                      .++....-.|+-+.+++.+.+..+.+ +.-..     -.|..++..++.    ....+.|.+++..+.+.  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            34444455666666666666655432 11111     123333333332    45678899999988875  46665554


Q ss_pred             HH-HHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          550 TL-VDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVT  628 (664)
Q Consensus       550 ~l-i~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  628 (664)
                      -. .+.+...|++++|++.++...+ ...-++++       ....+--+...+.-.+++++|.+.|.++.+.. .....+
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~-~q~~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~  341 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIE-SQSEWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF  341 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhcc-chhhHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence            43 4667788899999888764331 11112221       23455667777888999999999999998853 334444


Q ss_pred             HHHHH-HHHHhcCCH-------hHHHHHHHHH
Q 006012          629 YTTLM-KALIRVDKF-------HKVFSSYLFF  652 (664)
Q Consensus       629 ~~~l~-~a~~~~g~~-------~~A~~~~~~~  652 (664)
                      |.-+. .++...|+.       ++|.++++..
T Consensus       342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            44333 345567777       7777777633

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.05  E-value=3.6  Score=34.38  Aligned_cols=92  Identities=22%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHH---HHHHHHHHHHhc
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES-GLKPRTK---AYNALLKGYVKM  348 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~---~~~~li~~~~~~  348 (664)
                      .+.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+. |.+ ...   .|..-...|-..
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence            35677899999999998887642 457788999999999999999999988887763 332 222   233333456677


Q ss_pred             CCHHHHHHHHHHHHHCCC
Q 006012          349 GYLKDAEFVVSEMERSGV  366 (664)
Q Consensus       349 g~~~~a~~~~~~m~~~g~  366 (664)
                      |+.+.|..-|+..-+.|.
T Consensus       129 g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGS  146 (175)
T ss_pred             CchHHHHHhHHHHHHhCC
Confidence            888888888887777663

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=8.2  Score=36.22  Aligned_cols=87  Identities=18%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      ..|..-..+|-...++++|...+.+..+. .+.+...|.       ..+-++.|.-+.++|.+..  --...|+-....|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence            34555566777778888888776665531 111111111       1233444555555554421  1234566667777


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 006012          346 VKMGYLKDAEFVVSEME  362 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~  362 (664)
                      ..+|..+.|-..+++.-
T Consensus       102 ~E~GspdtAAmaleKAa  118 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAA  118 (308)
T ss_pred             HHhCCcchHHHHHHHHH
Confidence            77887777766666654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.84  E-value=5.6  Score=39.38  Aligned_cols=24  Identities=4%  Similarity=0.329  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          456 LHHAMAAFDRMLSEGIEPDTITWN  479 (664)
Q Consensus       456 ~~~A~~~~~~m~~~g~~~~~~~~~  479 (664)
                      +++...+++.|.+.|+..+..+|-
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~l  101 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYL  101 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHH
Confidence            334445555555555555544443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.55  E-value=12  Score=36.98  Aligned_cols=162  Identities=10%  Similarity=0.093  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          476 ITWNTLIDCHFKCGRYD---RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLV  552 (664)
Q Consensus       476 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  552 (664)
                      .+...++.+|...+..+   +|..+++.+.... +-....+..-++.+.+.++.+++.+++.+|+..- .-....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            45667778888777654   5556666664432 2235556566777777888999999999998862 21223344444


Q ss_pred             HHH---HhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcC------CHHHHHHHHHHHH
Q 006012          553 DIY---GQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLAL-----NSLINAFGEDQ------RDAEAFAVLQYMK  618 (664)
Q Consensus       553 ~~~---~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-----~~li~~~~~~g------~~~~A~~~~~~m~  618 (664)
                      ..+   ..... ..|...           +..+....+.|....|     ...+....+.+      +.+...++++...
T Consensus       163 ~~i~~l~~~~~-~~a~~~-----------ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~  230 (278)
T PF08631_consen  163 HHIKQLAEKSP-ELAAFC-----------LDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE  230 (278)
T ss_pred             HHHHHHHhhCc-HHHHHH-----------HHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH
Confidence            443   33222 223332           3333333233333211     11112222221      2455555555443


Q ss_pred             H-CCCCCCHHHHH---H----HHHHHHhcCCHhHHHHHHHH
Q 006012          619 E-NGLKPDVVTYT---T----LMKALIRVDKFHKVFSSYLF  651 (664)
Q Consensus       619 ~-~g~~p~~~~~~---~----l~~a~~~~g~~~~A~~~~~~  651 (664)
                      + .+.+.+..+-.   +    -+..+.+.+++++|.+.|++
T Consensus       231 ~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  231 HSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            3 22333433322   2    23456678999999999984

It is also involved in sporulation [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.50  E-value=15  Score=40.72  Aligned_cols=176  Identities=16%  Similarity=0.195  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006012          338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLL----IDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA  413 (664)
Q Consensus       338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~  413 (664)
                      ...-+..+++...++.|..+-+.-   +.  +..+...+    .+.+-+.|++++|...|-+-... +.|.     .++.
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~  405 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK  405 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence            344566667777777776665432   22  33333333    33344567777777766655432 1222     2344


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR  493 (664)
Q Consensus       414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  493 (664)
                      -|....+...-..+++.+.+.|. .+...-+.|+.+|.+.++.++..+..+... .|..  ..-....+..+-+.+-.++
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence            55555666666666777777664 344455667777777777766665554433 2211  0112334455555566666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNM  536 (664)
Q Consensus       494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m  536 (664)
                      |..+-.....+     ......   .+-..+++++|.+.+..+
T Consensus       482 a~~LA~k~~~h-----e~vl~i---lle~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  482 AELLATKFKKH-----EWVLDI---LLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHhccC-----HHHHHH---HHHHhcCHHHHHHHHhcC
Confidence            66555444332     222222   234566777777776654

>PRK11906 transcriptional regulator; Provisional

Probab=92.36  E-value=8.1  Score=40.10  Aligned_cols=109  Identities=18%  Similarity=0.219  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          456 LHHAMAAFDRMLSE-GIEPD-TITWNTLIDCHFKC---------GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE  524 (664)
Q Consensus       456 ~~~A~~~~~~m~~~-g~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g  524 (664)
                      .+.|..+|.+.... ...|+ ...|..+..++...         ....+|.++.++..+.+ +-|......+..+....+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            55666677766621 22333 33444443333221         12334555555555555 455555555555555555


Q ss_pred             CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 006012          525 RWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       525 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      +++.|...|++....+  || ..+|........-.|+.++|.+.
T Consensus       353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5666666666665532  32 34444444444555555555544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.35  E-value=1.6  Score=42.28  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 006012          476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYTT  550 (664)
Q Consensus       476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~  550 (664)
                      .++..++..+..+|+++.+...++++.... +-+...|..++.+|.+.|+...|+..++.+.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345666667777777777777777777765 55667777777777777777777777766654     377777777666


Q ss_pred             HHHH
Q 006012          551 LVDI  554 (664)
Q Consensus       551 li~~  554 (664)
                      +...
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            6655

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.08  E-value=28  Score=40.37  Aligned_cols=92  Identities=16%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHH----HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          437 EPDTHFYNVMI----DTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT  512 (664)
Q Consensus       437 ~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t  512 (664)
                      .|+...+..+.    +.+.....+++|--.|+..-+         ..--+.+|..+|++.+|+.+..++....- --..+
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~ 1001 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD-ELVIL 1001 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH-HHHHH
Confidence            35555544444    344455666777666655432         12345677778888888888776643210 00112


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          513 YNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       513 ~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      -..|..-+...++.-+|-++..+...
T Consensus      1002 a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHHHHHcccchhHHHHHHHHhc
Confidence            24566777788888888877776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.03  E-value=23  Score=39.33  Aligned_cols=176  Identities=15%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             HHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006012          167 SILIHALGRSEKLYEAFLLSQRQRLTPLTYNALI----SACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTN  242 (664)
Q Consensus       167 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  242 (664)
                      ..-+.++.+-..+.-|+.+......+......+.    +.+.+.|++++|...|-+-... +.|.     .+++-+....
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq  411 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ  411 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence            4457777888888899988555555554444444    4456789999999998776543 1222     2232222111


Q ss_pred             CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          243 KIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAV  322 (664)
Q Consensus       243 ~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l  322 (664)
                      +.  ...-..++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.-. .|..  ..-....+..+.+.+-.++|..+
T Consensus       412 ~I--knLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  412 RI--KNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             HH--HHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence            11  011234555666664 344455678999999999988777766543 2211  11234566777777777777666


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          323 FEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME  362 (664)
Q Consensus       323 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  362 (664)
                      -.....     .......+   +-..+++++|.+.++.+.
T Consensus       486 A~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  486 ATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence            554432     23333333   345678888888887764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.89  E-value=14  Score=36.41  Aligned_cols=171  Identities=13%  Similarity=0.111  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhccCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          441 HFYNVMIDTFGKYNCLH---HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI  517 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll  517 (664)
                      .++..++.+|...+..+   +|..+.+.+.+.. .-....+-.-+..+.+.++.+++.+.+.+|+..- .-....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            44556666676666544   4455555554432 1223444444555666778888888888887763 11233444444


Q ss_pred             HHH---HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH---HHHhcCChHHH--HHHHhhhHHHHHHHHHHHHHCCC
Q 006012          518 NLL---GEQERWEDVKRLLGNMRAQGLLPNVV--TYTTLVD---IYGQSGRFDDA--IECLEGLSDQAVNAFRVMRTDGL  587 (664)
Q Consensus       518 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~---~~~~~g~~~~A--~~~~~~~~~~a~~~~~~m~~~g~  587 (664)
                      ..+   ... ....+...+..++...+.|...  .-..++.   .....++....  ++.+++..+    ...+.....+
T Consensus       163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~----~v~~~~~~~l  237 (278)
T PF08631_consen  163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS----IVEHSLGKQL  237 (278)
T ss_pred             HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH----HHHHHhcCCC
Confidence            444   332 2345666666665554554443  1111111   12222222222  222221111    1122222222


Q ss_pred             CCCHH-HHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 006012          588 KPSNL-ALNSL----INAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       588 ~p~~~-~~~~l----i~~~~~~g~~~~A~~~~~~m~  618 (664)
                      .+... ...++    +..+.+.+++++|.++++-..
T Consensus       238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            22221 12222    355677899999999998654

It is also involved in sporulation [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.77  E-value=12  Score=35.53  Aligned_cols=57  Identities=9%  Similarity=0.022  Sum_probs=44.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012          596 SLINAFGEDQRDAEAFAVLQYMKENGLKPD---VVTYTTLMKALIRVDKFHKVFSSYLFFN  653 (664)
Q Consensus       596 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~a~~~~g~~~~A~~~~~~~~  653 (664)
                      .+.+-|.+.|.+-.|..-+++|++. .+-.   ...+..+..+|.+.|-.++|.+.-+.+.
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3567788999999999999999985 3332   3456678889999999999988777553

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.77  E-value=11  Score=34.96  Aligned_cols=202  Identities=14%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 006012          336 KAYNALLKGYVKMGYLKDAEFVVSEMERS-GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA-  413 (664)
Q Consensus       336 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~-  413 (664)
                      ..+......+...+++..+...+...... ........+......+...++...+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            44444555555555555555555554431 112233444444445555555555555555554432222 111111112 


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012          414 GYRDRGEWQRTFQVLKEMKSSGV--EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY  491 (664)
Q Consensus       414 ~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  491 (664)
                      .+...|+++.+...+.+......  ......+......+...++.+.+...+....+.........+..+...+...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            45555666666666665533211  0122223333333445556666666666665542111244555555566666666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       492 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      +.|...+........ .....+..+...+...+..+++...+.+....
T Consensus       219 ~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         219 EEALEYYEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHhhCc-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666666666655431 11233333333333455566666666665553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.43  E-value=3.5  Score=39.39  Aligned_cols=96  Identities=17%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-CHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSP---KTATYAAVITALSNSGRTIEAEAVFEELKESGL-KP-RTKAYNAL  341 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p-~~~~~~~l  341 (664)
                      .|+.-+.. .+.|++..|.+.|...++.. +-   ....+-.|...+...|++++|..+|..+.+.-. .| -...+--|
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            56655554 46678999999998888754 22   245677788899999999999999988876422 12 23566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 006012          342 LKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       342 i~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      ..+..+.|+.++|..+|+++.+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            77888888888888888888876

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.41  E-value=0.64  Score=30.80  Aligned_cols=41  Identities=20%  Similarity=0.082  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLM  633 (664)
Q Consensus       592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~  633 (664)
                      .+|..+..+|...|++++|+++++++++. .+-|...+..|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence            36778899999999999999999999994 233556666554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.35  E-value=15  Score=35.70  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=73.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          274 GFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD  353 (664)
Q Consensus       274 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  353 (664)
                      .....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            3456788888888888777653 334566667778888888888888888877653222122222223344444444444


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012          354 AEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       354 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  399 (664)
                      ...+-++.-..   | |...-..+...|...|+.+.|.+.+-.+...
T Consensus       222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44444444432   3 5556666777777777777777766655443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.28  E-value=17  Score=36.24  Aligned_cols=162  Identities=16%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHH
Q 006012          408 YSRILAGYRDRGEWQRTFQVLKEMKSS-GVEP---DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI-----EPDTITW  478 (664)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~  478 (664)
                      |..+.+++.+..++.+++.+-+.-... |..|   .-....++..++...+.++++++.|+...+...     ......+
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            344444555555555555544443221 2111   112233355566666677777777776654211     1123456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-C
Q 006012          479 NTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTTYN-----IMINLLGEQERWEDVKRLLGNMRA----QGLLP-N  544 (664)
Q Consensus       479 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~-----~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~  544 (664)
                      -.|-..|.+..++++|.-+.....+-    ++..-..-|.     .+.-++...|.+..|.+..++..+    .|-.+ -
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            67777777777877777666554331    2111111222     233455667777667666666543    23222 2


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          545 VVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       545 ~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      ......+.+.|...|+.+.|..-++
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe  270 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYE  270 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHH
Confidence            3344567788888888888776655

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.21  E-value=8.1  Score=32.40  Aligned_cols=90  Identities=18%  Similarity=0.077  Sum_probs=47.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH---HHHHHHHHHHcC
Q 006012          309 ALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS-GVLPDEHT---YSLLIDAYANAG  384 (664)
Q Consensus       309 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~---~~~li~~~~~~g  384 (664)
                      ++...|+++.|++.|.+.+..- +-+...||.-..++--.|+.++|..-+++..+. |.+ ....   |---...|-..|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence            4556667777777776665542 225566666666666666666666666665543 222 2111   111222344455


Q ss_pred             CHHHHHHHHHHHHhcC
Q 006012          385 RWESARIVLKEMEVSH  400 (664)
Q Consensus       385 ~~~~A~~l~~~m~~~~  400 (664)
                      +-+.|..-|+...+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            5555555555554433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.20  E-value=14  Score=35.14  Aligned_cols=84  Identities=14%  Similarity=0.118  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012          193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI  272 (664)
Q Consensus       193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li  272 (664)
                      +..|-.=+..-.+.|++++|...|+.+..+. +-+..+                                  ..+.-.++
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~----------------------------------~qa~l~l~   78 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYS----------------------------------EQAQLDLA   78 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCccc----------------------------------HHHHHHHH
Confidence            3455555555678899999999999998763 222111                                  22223456


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALS  311 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  311 (664)
                      -++.+.+++++|+..+++..+.-.......|...|.+++
T Consensus        79 yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs  117 (254)
T COG4105          79 YAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS  117 (254)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence            677788888999888887776432223344555555555

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.91  E-value=5.7  Score=38.95  Aligned_cols=155  Identities=10%  Similarity=0.029  Sum_probs=103.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCC
Q 006012          310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE----HTYSLLIDAYANAGR  385 (664)
Q Consensus       310 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~  385 (664)
                      +...|+..+|...++++++. .+.|...++-.=++|...|+.+.....++++... -.+|.    .....+.-++...|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence            34578888888888888875 4557778887888888899988888888887753 11233    223344455567889


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 006012          386 WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS---GVEPDTHFYNVMIDTFGKYNCLHHAMAA  462 (664)
Q Consensus       386 ~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~  462 (664)
                      +++|++.-++..+.+ +.|...-.+....+-..+++.++.++..+-...   +.-.-..-|=...-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            999988888877655 457777777888888888888888876653321   0000111121222234455788888888


Q ss_pred             HHHHH
Q 006012          463 FDRML  467 (664)
Q Consensus       463 ~~~m~  467 (664)
                      |+.-+
T Consensus       270 yD~ei  274 (491)
T KOG2610|consen  270 YDREI  274 (491)
T ss_pred             HHHHH
Confidence            87644

>PRK11619 lytic murein transglycosylase; Provisional

Probab=90.74  E-value=32  Score=38.41  Aligned_cols=273  Identities=10%  Similarity=0.024  Sum_probs=150.0

Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006012          148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD  227 (664)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  227 (664)
                      ++-..+.++...|....+-..-...+++.+++.+-.......+.+...-.....+....|+.++|.....++-..| ...
T Consensus        84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~  162 (644)
T PRK11619         84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSL  162 (644)
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCC
Confidence            4555555554445545566666667777788877766543446677666777888888999888888888887766 345


Q ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCC
Q 006012          228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK------------AGDASKAMRFLGMAQGVG  295 (664)
Q Consensus       228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~g  295 (664)
                      ...++.++..+.+.|.+......+-+......|-   ...-..+......            ..+...+..++..     
T Consensus       163 p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~---~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----  234 (644)
T PRK11619        163 PNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN---TGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----  234 (644)
T ss_pred             ChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----
Confidence            6778888988888887776554444444444332   1122222221100            0111111111111     


Q ss_pred             CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012          296 LSPKTATYAAVITALS--NSGRTIEAEAVFEELKESG-LKPR--TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE  370 (664)
Q Consensus       296 ~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  370 (664)
                      ++++...-..++-++.  ...+.+.|..++....... ..+.  ...+..+.......+...++...++......  .+.
T Consensus       235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~  312 (644)
T PRK11619        235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QST  312 (644)
T ss_pred             cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCc
Confidence            1223211111122222  3345677888887764432 2211  1233344333334332456666666544332  234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          371 HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  432 (664)
                      .....-+....+.++++.+...+..|.... .-...-..-+.+++...|+.++|...|+.+.
T Consensus       313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        313 SLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            444555555567888888888888774432 2233334445666666788888888887763

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.69  E-value=3.8  Score=39.13  Aligned_cols=80  Identities=20%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHH
Q 006012          488 CGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LP-NVVTYTTLVDIYGQSGRFDD  563 (664)
Q Consensus       488 ~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~  563 (664)
                      .|++..|...|...++..  -.-....+..|..++...|+++.|..+|..+.+.-. .| -+..+.-|..+..+.|+.++
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~  233 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE  233 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence            444555555555544431  011122333444455555555555555554444311 11 12344444444455555544


Q ss_pred             HHHH
Q 006012          564 AIEC  567 (664)
Q Consensus       564 A~~~  567 (664)
                      |...
T Consensus       234 A~at  237 (262)
T COG1729         234 ACAT  237 (262)
T ss_pred             HHHH
Confidence            4444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.53  E-value=15  Score=34.48  Aligned_cols=86  Identities=17%  Similarity=0.130  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006012          195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVG  274 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~  274 (664)
                      .|..-..+|...+++++|...+.+..+. ..-|...|.. .+++-        .+-.+.+++.+.  .--+..|+.-..+
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-AKayE--------qaamLake~~kl--sEvvdl~eKAs~l  100 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-AKAYE--------QAAMLAKELSKL--SEVVDLYEKASEL  100 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-HHHHH--------HHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence            4555556666777777777766665532 1112111111 11111        111233333321  2234456667777


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 006012          275 FAKAGDASKAMRFLGMAQ  292 (664)
Q Consensus       275 ~~~~g~~~~A~~~~~~~~  292 (664)
                      |..+|..+.|-..+++.-
T Consensus       101 Y~E~GspdtAAmaleKAa  118 (308)
T KOG1585|consen  101 YVECGSPDTAAMALEKAA  118 (308)
T ss_pred             HHHhCCcchHHHHHHHHH
Confidence            888888777777666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.48  E-value=32  Score=38.03  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             HHHHcccCCHHHHHHh---hCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006012          170 IHALGRSEKLYEAFLL---SQRQRL---TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK  243 (664)
Q Consensus       170 i~~~~~~~~~~~A~~~---~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  243 (664)
                      |+=+.+.+++++|+..   ..+..+   -...+...|..+.-.|++++|-...-+|...    +..-|..-+..+...+.
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~  438 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ  438 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence            3344455678888877   222222   3357889999999999999999999998853    45566666666666655


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006012          244 IDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAK  277 (664)
Q Consensus       244 ~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~  277 (664)
                      .     ..+...+.......+..+|..++..|..
T Consensus       439 l-----~~Ia~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  439 L-----TDIAPYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             c-----chhhccCCCCCcccCchHHHHHHHHHHH
Confidence            4     2344444444444667777777777765

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=90.29  E-value=24  Score=36.31  Aligned_cols=139  Identities=11%  Similarity=0.116  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006012          475 TITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTY-TTLV  552 (664)
Q Consensus       475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li  552 (664)
                      ...|...|+.-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |+..-|..+|+.-...  -||...| ...+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3456666666666666777777777777776 56677777777776654 5556666777654443  2343333 4455


Q ss_pred             HHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          553 DIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVT  628 (664)
Q Consensus       553 ~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  628 (664)
                      .-+...++-+.|..+|+..++.-.    ...      -...|..+|.--..-|+...|..+=++|.+  +.|-..+
T Consensus       474 ~fLi~inde~naraLFetsv~r~~----~~q------~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~  537 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLE----KTQ------LKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENL  537 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHH----Hhh------hhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhH
Confidence            666667777777776653322111    000      012455555555566777777766666665  3444333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.19  E-value=1.2  Score=29.43  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                      |..+...|.+.|++++|.++|+++++.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334444455555555555555555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.17  E-value=20  Score=35.30  Aligned_cols=117  Identities=11%  Similarity=0.021  Sum_probs=69.1

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 006012          382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDT----HFYNVMIDTFGKYNCLH  457 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~  457 (664)
                      ..|+..+|-..++++.+. .+.|...+...=.+|...|+.+.....++++... ..+|.    .+-....-++..+|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            456666666667776654 3556666666667777777777777666666533 12232    22223333445666777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          458 HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       458 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      +|++.-++..+.+ +.|.-.-.++...+-..|++.++.++..+-
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            7777666666544 345555555666666667777776665543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.05  E-value=4.1  Score=39.57  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012          510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP  589 (664)
Q Consensus       510 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p  589 (664)
                      ..++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|+..++++.+.      .+...|+.|
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------~~edlgi~P  225 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------LAEELGIDP  225 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHH------hhhhcCCCc
Confidence            446677888889999999999999999997544 8899999999999999999999998765431      455669999


Q ss_pred             CHHHHHHHHHHH
Q 006012          590 SNLALNSLINAF  601 (664)
Q Consensus       590 ~~~~~~~li~~~  601 (664)
                      ...+...+..+.
T Consensus       226 ~~~~~~~y~~~~  237 (280)
T COG3629         226 APELRALYEEIL  237 (280)
T ss_pred             cHHHHHHHHHHh
Confidence            998887776663

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=90.03  E-value=16  Score=33.82  Aligned_cols=224  Identities=18%  Similarity=0.130  Sum_probs=145.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          278 AGDASKAMRFLGMAQGVGLS-PKTATYAAVITALSNSGRTIEAEAVFEELKES-GLKPRTKAYNALLKGYVKMGYLKDAE  355 (664)
Q Consensus       278 ~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~  355 (664)
                      .+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            34555555555555543211 13566677777777788888877777776642 22335556666667777777788888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          356 FVVSEMERSGVLPDEHTYSLLID-AYANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGYRDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  432 (664)
                      +.+.........+ ......... .+...|+++.|...+++......  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            8888777654332 122222333 67788888888888888755221  1233344444445677788888888888877


Q ss_pred             HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012          433 SSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERG  505 (664)
Q Consensus       433 ~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  505 (664)
                      ... .. ....+..+...+...++.+.+...+.......  ++ ...+..+...+...+..+++...+.+.....
T Consensus       195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            653 22 46777777788888888889999888888653  32 3444444444557777888988888887764

>PRK11906 transcriptional regulator; Provisional

Probab=89.91  E-value=27  Score=36.38  Aligned_cols=80  Identities=11%  Similarity=-0.027  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       317 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      .+|.++-+...+.+. -|......+.....-.++++.|..+|++....+.. ...+|........-.|+.++|.+.+++.
T Consensus       321 ~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        321 QKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344455555544432 25555555555555555566666666666554321 2334444444444456666666666654


Q ss_pred             Hh
Q 006012          397 EV  398 (664)
Q Consensus       397 ~~  398 (664)
                      .+
T Consensus       399 lr  400 (458)
T PRK11906        399 LQ  400 (458)
T ss_pred             hc
Confidence            43

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=89.91  E-value=3.7  Score=36.60  Aligned_cols=116  Identities=15%  Similarity=0.110  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 006012          526 WEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF---DDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAF  601 (664)
Q Consensus       526 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~  601 (664)
                      ++.|.+..+.-...+ ..|...++.-..++....++   .++.+    ++++|+.-|++...  +.|+. .++..+.++|
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~----miedAisK~eeAL~--I~P~~hdAlw~lGnA~   79 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKK----MIEDAISKFEEALK--INPNKHDALWCLGNAY   79 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHH----HHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHH----HHHHHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence            344555554433333 22555555555555444433   33443    44566666776665  56775 4788888888


Q ss_pred             HhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHhh
Q 006012          602 GEDQR-----------DAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFFNIYK  656 (664)
Q Consensus       602 ~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~~~~~  656 (664)
                      ...+.           +++|...|++..+  ..|+...|+.-+....      +|-++...+..+.
T Consensus        80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~  137 (186)
T PF06552_consen   80 TSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG  137 (186)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred             HHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence            65443           5556666666666  6899999998777653      4666655454443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.90  E-value=12  Score=32.21  Aligned_cols=71  Identities=13%  Similarity=0.046  Sum_probs=41.5

Q ss_pred             HHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          486 FKCGRYDRAEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG  556 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  556 (664)
                      .+.|++++|.+.|+.+..+-  -+-....-..++.++.+.+++++|...+++.++....-...-|...+.+++
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            45677777777777776651  022334455666777777777777777777776544322333444444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.83  E-value=0.75  Score=28.88  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          593 ALNSLINAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       593 ~~~~li~~~~~~g~~~~A~~~~~~m~  618 (664)
                      +|..|...|.+.|++++|++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35666677777777777777777644

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.67  E-value=0.82  Score=28.71  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          195 TYNALISACARNDDLEKALNLMSKMR  220 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~  220 (664)
                      +|+.|...|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            58899999999999999999999955

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.52  E-value=15  Score=32.67  Aligned_cols=123  Identities=19%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCCH
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPKT-ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNAL--LKGYVKMGYL  351 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~  351 (664)
                      .+.++.++|+..|..+.+.|...-. ....-......+.|+...|...|+++-.....|-.. -.--|  ...+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            4556777777777777766533221 122223344556677777777777766544333222 11111  1223455666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV  398 (664)
Q Consensus       352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  398 (664)
                      ++.....+-+-..+-..-...-.+|.-+-.+.|++.+|.+.|+++..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            66666665555444333344445555555666777777776666654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.01  E-value=23  Score=34.40  Aligned_cols=50  Identities=16%  Similarity=0.112  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 006012          509 CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ--GLLPNVVTYTTLVDIYGQSG  559 (664)
Q Consensus       509 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g  559 (664)
                      |...-..+...+...|+.+.|.+.+-.+.+.  |.. |...-..++..+.-.|
T Consensus       235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g  286 (304)
T COG3118         235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence            4444444555555555555555554444433  222 3344445555554444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.98  E-value=1  Score=27.68  Aligned_cols=32  Identities=34%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012          592 LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD  625 (664)
Q Consensus       592 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  625 (664)
                      .+|..+..+|...|++++|+..+++.++  +.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            4677888889999999999999998887  4554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.70  E-value=7.2  Score=35.32  Aligned_cols=63  Identities=22%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKE  328 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~  328 (664)
                      ..+..+...|++.|+.++|++.|.++.+....+.  ...+-.+|+.....+++..+.....+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4566777888888888888888888776543333  44566777777777887777777666544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.64  E-value=35  Score=35.86  Aligned_cols=53  Identities=19%  Similarity=0.243  Sum_probs=23.2

Q ss_pred             HHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          449 TFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       449 ~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      ++-+.|+.++|.+.+.+|.+.... ........|+.++...+.+.++..++.+.
T Consensus       268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            333444555555555444432211 11223344455555555555555555444

The molecular function of this protein is uncertain.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.11  E-value=19  Score=32.12  Aligned_cols=31  Identities=13%  Similarity=0.206  Sum_probs=16.3

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 006012          288 LGMAQGVGLSPKTATYAAVITALSNSGRTIE  318 (664)
Q Consensus       288 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  318 (664)
                      ++.+.+.+++|+...+..+++.+.+.|++..
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3344445555555555555555555555433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.76  E-value=33  Score=34.67  Aligned_cols=252  Identities=15%  Similarity=0.091  Sum_probs=156.1

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPKTATYAA----VITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL  351 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  351 (664)
                      .-.|+++.|.+-|+.|..     |..+-..    |.-.--+.|..+.|.+.-+..-..-.. -...+...+...|..|++
T Consensus       131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdW  204 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDW  204 (531)
T ss_pred             HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCCh
Confidence            345899999999998875     3333222    222334668888888777776554222 346778888899999999


Q ss_pred             HHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 006012          352 KDAEFVVSEMERSG-VLPDEHT--YSLLIDAYAN---AGRWESARIVLKEMEVSHAKPNSFI-YSRILAGYRDRGEWQRT  424 (664)
Q Consensus       352 ~~a~~~~~~m~~~g-~~~~~~~--~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a  424 (664)
                      +.|+++++.-.... +.++..-  -..|+.+-..   .-+...|...-.+..+  +.|+..- -.....++.+.|+..++
T Consensus       205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg  282 (531)
T COG3898         205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG  282 (531)
T ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence            99999998766432 3334321  2223322211   1234445444444333  3444432 23345778899999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      -.+++.+=+....|+.  ..  +..+.+.|+.  ++.-+++..+. .+ +.+..+.-.+..+-...|++..|..--+...
T Consensus       283 ~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~  356 (531)
T COG3898         283 SKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA  356 (531)
T ss_pred             hhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            9999998877545543  22  2334555553  33333332221 11 3356666777778888899988887776665


Q ss_pred             HCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCC
Q 006012          503 ERGYFPCTTTYNIMINLLGE-QERWEDVKRLLGNMRAQGLLP  543 (664)
Q Consensus       503 ~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~p  543 (664)
                      ..  .|....|..|.+.-.. .|+-.++.+.+.+.++.--.|
T Consensus       357 r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         357 RE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             hh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            54  5777788888776554 499999999999998764333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.48  E-value=0.65  Score=28.77  Aligned_cols=32  Identities=9%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006012          614 LQYMKENGLKPDVVTYTTLMKALIRVDKFHKVF  646 (664)
Q Consensus       614 ~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~  646 (664)
                      +++.++.. +-|...|..|...|...|++++|+
T Consensus         2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34445421 335677777777777777777775

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=87.13  E-value=18  Score=31.14  Aligned_cols=53  Identities=11%  Similarity=0.219  Sum_probs=22.0

Q ss_pred             HHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          381 ANAGRWESARIVLKEMEVSHA--KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       381 ~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                      .+.|++++|.+.|+.+...-.  +-....--.++.+|.+.+++++|...++..++
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            344445555444444443321  11222333344444444444444444444443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.98  E-value=55  Score=36.31  Aligned_cols=102  Identities=11%  Similarity=0.103  Sum_probs=66.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSP---KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      |+.+.+.+.+++|+++-+....  ..|   -...+..+|..+.-.|++++|-...-.|...    +..-|-.-+..+...
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL  436 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence            5567778888888887765443  233   2446778888888899999998888888764    556666666666666


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN  382 (664)
Q Consensus       349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  382 (664)
                      ++....   +.-+.......+...|..++..+..
T Consensus       437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence            654443   2223333223455667776666665

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.94  E-value=0.6  Score=28.95  Aligned_cols=23  Identities=17%  Similarity=0.011  Sum_probs=11.0

Q ss_pred             CchHHHHHHHHHHHcccCCHHHH
Q 006012          160 YSYELLYSILIHALGRSEKLYEA  182 (664)
Q Consensus       160 ~~~~~~~~~li~~~~~~~~~~~A  182 (664)
                      |.+...|+.|...|...|++++|
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhh
Confidence            44444444444444444444444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.92  E-value=1.6  Score=26.63  Aligned_cols=27  Identities=22%  Similarity=0.059  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          593 ALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       593 ~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      .|..+...+.+.|++++|++.+++.++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            466777788888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=86.88  E-value=14  Score=29.77  Aligned_cols=88  Identities=15%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS  217 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  217 (664)
                      ......+|-.+.+|+...+.  ....+.-+.+..+.+.|+|.+|... .....||...|-+|-.  .+.|-.+++...+.
T Consensus        18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~   93 (116)
T PF09477_consen   18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT   93 (116)
T ss_dssp             TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence            44567899999999998873  3345555667788899999999777 6667789899988765  68899999999999


Q ss_pred             HHHHcCCCCChhhH
Q 006012          218 KMRQDGYHCDFINY  231 (664)
Q Consensus       218 ~m~~~g~~p~~~~~  231 (664)
                      ++...| .|....|
T Consensus        94 rla~~g-~~~~q~F  106 (116)
T PF09477_consen   94 RLASSG-SPELQAF  106 (116)
T ss_dssp             HHCT-S-SHHHHHH
T ss_pred             HHHhCC-CHHHHHH
Confidence            988776 3443333

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.27  E-value=24  Score=31.41  Aligned_cols=122  Identities=13%  Similarity=0.050  Sum_probs=52.8

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHH
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDE-HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSF---IYSRILAGYRDRGEWQ  422 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~  422 (664)
                      +.+..++|+.-|..+.+.|...-+ -..--+.......|+...|...|+++-.....|-..   ....-...+...|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            334455555555555554432111 111112233445555566666666554433222221   0111112234455555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS  468 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  468 (664)
                      ......+.+-..+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5555555444333222233333444444555555555555555543

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=86.08  E-value=19  Score=34.95  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=61.9

Q ss_pred             HcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHH
Q 006012          205 RNDDLEKALNLMSKMRQ-DGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIEC-DKIELDGQLLNDVIVGFAKAGDAS  282 (664)
Q Consensus       205 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~-~~~~~d~~~~~~li~~~~~~g~~~  282 (664)
                      ++..+.+|+.+|+...- ..+--|..+...+++......+.......++.+.+.. .+-.++..+.-.++..+++.+++.
T Consensus       140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~  219 (292)
T PF13929_consen  140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN  219 (292)
T ss_pred             hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence            44456677777763322 2244466666666666655222111111222222222 233555556666666666666666


Q ss_pred             HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006012          283 KAMRFLGMAQGV-GLSPKTATYAAVITALSNSGRTIEAEAVFE  324 (664)
Q Consensus       283 ~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~  324 (664)
                      +-.++++..... +...|...|...|+...+.|+..-..++.+
T Consensus       220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            666666555443 334455666666666666666554444443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.95  E-value=43  Score=34.08  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP---CTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      ...+|..+...+.+.|.++.|...+..+...+...   .......-.+.+-..|+..+|...+++...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34566777777777777777777777776643111   233344445556666777777777777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.73  E-value=12  Score=33.95  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=25.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          338 YNALLKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       338 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      +..+...|++.|+.+.|.+.+.++.+....+.  ...+-.+|......+++..+...+.+.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34444445555555555555554444322111  223333444444444544444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.43  E-value=52  Score=34.60  Aligned_cols=182  Identities=14%  Similarity=0.212  Sum_probs=123.8

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012          436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI  515 (664)
Q Consensus       436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~  515 (664)
                      -..|.....+++..++.+-.+.-.+.+..+|+..|  -+-..|-.++.+|..+ ..++-..+|+++.+..+ .|++.-..
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re  137 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE  137 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence            35677888899999999999999999999999876  4677888999999988 67888999999998863 34444455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC-CCC
Q 006012          516 MINLLGEQERWEDVKRLLGNMRAQGLLPN------VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD-GLK  588 (664)
Q Consensus       516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~-g~~  588 (664)
                      |..-|.+ ++...+..+|.++... +.|.      ..+|..|....  ..+.+....           +..++... |..
T Consensus       138 La~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~-----------l~~kiqt~lg~~  202 (711)
T COG1747         138 LADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLR-----------LQKKIQTKLGEG  202 (711)
T ss_pred             HHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHH-----------HHHHHHHhhccc
Confidence            5555555 8888899999888765 2221      12333333211  112222222           23333332 444


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          589 PSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALI  637 (664)
Q Consensus       589 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~  637 (664)
                      --.+.+.-+..-|....++++|++++..+.+.+ .-|...-..++..+.
T Consensus       203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR  250 (711)
T COG1747         203 RGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLR  250 (711)
T ss_pred             hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence            455677777788989999999999999888754 345555555555443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.37  E-value=18  Score=37.47  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=73.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHH---CCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC
Q 006012          519 LLGEQERWEDVKRLLGNMRA---QGLLPN-----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS  590 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~---~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~  590 (664)
                      -+.-.|++.+|.+++...--   .|...+     ...||.|.-...+.|.+.-+..+|.    .|++-+..-...|++|.
T Consensus       249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~----kAL~N~c~qL~~g~~~~  324 (696)
T KOG2471|consen  249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL----KALRNSCSQLRNGLKPA  324 (696)
T ss_pred             HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH----HHHHHHHHHHhccCCCC
Confidence            34556788888777653321   122112     2233555555666777776666654    34433444445566654


Q ss_pred             H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          591 N-----------LALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV  639 (664)
Q Consensus       591 ~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~  639 (664)
                      .           .+||+ .-.|...|++-.|.+.|.+..+. +.-++..|-.|..+|...
T Consensus       325 ~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  325 KTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             cceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence            3           34443 34577899999999999999874 677899999999999754

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.96  E-value=0.035  Score=48.54  Aligned_cols=84  Identities=14%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          446 MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQER  525 (664)
Q Consensus       446 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~  525 (664)
                      ++..+.+.+..+.+..+++.+.+.+...+....+.++..|++.++.++..++++...       ..-...+++.|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence            345555666666777777777765555567777777777777777677777766111       1223445666666666


Q ss_pred             HHHHHHHHHHH
Q 006012          526 WEDVKRLLGNM  536 (664)
Q Consensus       526 ~~~a~~~~~~m  536 (664)
                      ++++..++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            66666655543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.46  E-value=27  Score=31.34  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHH-------HHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006012          491 YDRAEELFEEMQERGYFPCTTTYNIMIN---LLGEQERWEDVKRLL-------GNMRAQGLLPN-VVTYTTLVDIYGQSG  559 (664)
Q Consensus       491 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~---~~~~~g~~~~a~~~~-------~~m~~~~~~p~-~~~~~~li~~~~~~g  559 (664)
                      ++.|.+.++.-...+ +.|...++.-..   -+++..+..++.+++       ++.+.  +.|+ ..++..+..+|...+
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence            344555555544443 344443333222   223333333343444       34443  4565 477888888887765


Q ss_pred             ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          560 RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGL  622 (664)
Q Consensus       560 ~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  622 (664)
                      .+..-..--+...++|.+.|++..+  ..|+..+|+.-+...      ++|-++..++.+.+.
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~  138 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL  138 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence            4332222222344578888888776  479999998888766      356667777766543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=83.86  E-value=20  Score=28.53  Aligned_cols=86  Identities=15%  Similarity=0.101  Sum_probs=64.9

Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          141 SSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMSKM  219 (664)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  219 (664)
                      ...++|-.+-+|+...+.  ....+.-+-+..+...|+|.+|..+ .....||...|-+|-.  .|.|..+++..-+.+|
T Consensus        19 HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rl   94 (115)
T TIGR02508        19 HCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRL   94 (115)
T ss_pred             hHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence            456889999999987762  2344445556788899999999998 5556789999988865  5778888888888888


Q ss_pred             HHcCCCCChhhH
Q 006012          220 RQDGYHCDFINY  231 (664)
Q Consensus       220 ~~~g~~p~~~~~  231 (664)
                      ...| .|....|
T Consensus        95 a~sg-~p~lq~F  105 (115)
T TIGR02508        95 AASG-DPRLQTF  105 (115)
T ss_pred             HhCC-CHHHHHH
Confidence            8877 4544444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.77  E-value=10  Score=34.62  Aligned_cols=72  Identities=8%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006012          574 QAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN---GLKPDVVTYTTLMKALIRVDKFHKVF  646 (664)
Q Consensus       574 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~a~~~~g~~~~A~  646 (664)
                      +|...|-++...+.--++.....|..-|. ..+.+++++++.+..+.   +-.+|+..+.+|+..+.+.|++++|.
T Consensus       124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            35555777777766556666666665554 78899999999999873   33778999999999999999999885

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.26  E-value=31  Score=30.33  Aligned_cols=52  Identities=19%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPKTATY-AAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      .+.++.+++..++..+...  .|..... ..-...+.+.|++.+|.++|+++...
T Consensus        21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            3456777777777666553  3443222 22234456677777777777776654

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.99  E-value=21  Score=34.92  Aligned_cols=105  Identities=18%  Similarity=0.267  Sum_probs=71.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012          294 VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESG---LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDE  370 (664)
Q Consensus       294 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  370 (664)
                      .|.+....+...++..-....+++.+...+-+++...   ..|+...+ ..++.+. .-+.++++.++..=++.|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence            4445566666666666666778888888777776421   12222222 2233322 33567888888888888888899


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012          371 HTYSLLIDAYANAGRWESARIVLKEMEVSH  400 (664)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  400 (664)
                      ++++.+|+.+.+.+++.+|..+.-.|....
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999998888888877776543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.82  E-value=67  Score=33.83  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=33.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          375 LLIDAYANAGRWESARIVLKEMEVSHAK-PNSFIYSRILAGYRDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  432 (664)
                      .+..+.-+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+..
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            3444455566666666666666543321 233355566666666666666666666644

The molecular function of this protein is uncertain.

>PRK09687 putative lyase; Provisional

Probab=82.05  E-value=55  Score=32.23  Aligned_cols=29  Identities=14%  Similarity=0.069  Sum_probs=13.5

Q ss_pred             CCHHHHHHHHHHHHhcCCh----HHHHHHHHHH
Q 006012          298 PKTATYAAVITALSNSGRT----IEAEAVFEEL  326 (664)
Q Consensus       298 ~~~~~~~~li~~~~~~g~~----~~A~~l~~~m  326 (664)
                      +|...-...+.++.+.|+.    .++...+..+
T Consensus        66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l   98 (280)
T PRK09687         66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNL   98 (280)
T ss_pred             CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence            3444444445555555542    3444444444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.89  E-value=86  Score=34.42  Aligned_cols=85  Identities=12%  Similarity=-0.037  Sum_probs=40.3

Q ss_pred             hcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          312 NSGRTIEAEAVFEELKE-------SGLKPRTKAYNALLKGYVKMG-----YLKDAEFVVSEMERSGVLPDEHTYSLLIDA  379 (664)
Q Consensus       312 ~~g~~~~A~~l~~~m~~-------~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  379 (664)
                      ...+.+.|...|+.+.+       .+   .......+..+|.+..     +.+.|..++....+.|.. +....-..+..
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~  336 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE  336 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence            44566666666666654       33   2223444555554432     445566666666655532 33222221111


Q ss_pred             HHH-cCCHHHHHHHHHHHHhcC
Q 006012          380 YAN-AGRWESARIVLKEMEVSH  400 (664)
Q Consensus       380 ~~~-~g~~~~A~~l~~~m~~~~  400 (664)
                      ... ..+...|.++|......|
T Consensus       337 ~g~~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  337 TGTKERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             cCCccccHHHHHHHHHHHHHcC
Confidence            111 134556666666665554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.87  E-value=28  Score=37.24  Aligned_cols=100  Identities=17%  Similarity=0.119  Sum_probs=53.5

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI  565 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  565 (664)
                      .+.|+++.|.++..+..      +..-|..|.++....+++..|.+.+.+...         |..|+-.+...|+-+.-.
T Consensus       648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~  712 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA  712 (794)
T ss_pred             hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence            45666666666654432      345566777777777777777666665543         344555555555544211


Q ss_pred             HHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          566 ECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYM  617 (664)
Q Consensus       566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  617 (664)
                      .+           -....+.|.      .|....+|...|++++..+++.+-
T Consensus       713 ~l-----------a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  713 VL-----------ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HH-----------HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence            11           011111221      233334566678888887776544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.86  E-value=53  Score=31.95  Aligned_cols=58  Identities=9%  Similarity=0.149  Sum_probs=35.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML  467 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  467 (664)
                      ......|..+|.+.+|.++.+...... +.+...+-.++..++..|+--.+.+-++++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            344456666666667766666666543 4555666666666777776666666555554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.83  E-value=41  Score=30.65  Aligned_cols=23  Identities=17%  Similarity=0.011  Sum_probs=12.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 006012          598 INAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       598 i~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                      .+++...|+.++|..-|++.++.
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHc
Confidence            35555555555555555555553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.32  E-value=4.9  Score=24.48  Aligned_cols=29  Identities=24%  Similarity=0.195  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006012          194 LTYNALISACARNDDLEKALNLMSKMRQD  222 (664)
Q Consensus       194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~  222 (664)
                      .+|..+...|...|++++|+..|++..+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            57899999999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.31  E-value=48  Score=31.13  Aligned_cols=148  Identities=16%  Similarity=0.221  Sum_probs=79.4

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHH-HHHHHHHHHHhcCC
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMR----AQGLLPNVV-TYTTLVDIYGQSGR  560 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~-~~~~li~~~~~~g~  560 (664)
                      .-.+.+++|.++|.+...               .|--.++|..|-..|-++-    +.|-+-|.. +|.-... |.+.++
T Consensus        25 gg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~   88 (288)
T KOG1586|consen   25 GGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVD   88 (288)
T ss_pred             CCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccC
Confidence            345688899888876532               1222233333333333222    123333332 3333333 445568


Q ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH--CCCCCCHHH---HHHHHH
Q 006012          561 FDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGED-QRDAEAFAVLQYMKE--NGLKPDVVT---YTTLMK  634 (664)
Q Consensus       561 ~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~--~g~~p~~~~---~~~l~~  634 (664)
                      +++|.++++    .|+++|..|-+..  --......+...|-.. .++++|+..++..-+  .|-..+...   +..+..
T Consensus        89 ~~eAv~cL~----~aieIyt~~Grf~--~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~  162 (288)
T KOG1586|consen   89 PEEAVNCLE----KAIEIYTDMGRFT--MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ  162 (288)
T ss_pred             hHHHHHHHH----HHHHHHHhhhHHH--HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence            888887754    5677777776531  1122344555555444 678888888888766  232223222   223333


Q ss_pred             HHHhcCCHhHHHHHHHHHHHh
Q 006012          635 ALIRVDKFHKVFSSYLFFNIY  655 (664)
Q Consensus       635 a~~~~g~~~~A~~~~~~~~~~  655 (664)
                      .-...+++.+|+++|+..-..
T Consensus       163 yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  163 YAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445678888888888854433

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=80.81  E-value=15  Score=29.33  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=17.6

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          612 AVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       612 ~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      +-++.+....+.|++.+..+.++||.|.+++.-|.+++|
T Consensus        31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE   69 (108)
T PF02284_consen   31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE   69 (108)
T ss_dssp             HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            333334344455555555555555555555555555555

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.62  E-value=15  Score=39.18  Aligned_cols=25  Identities=20%  Similarity=0.003  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHH
Q 006012          441 HFYNVMIDTFGKYNCLHHAMAAFDR  465 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~~A~~~~~~  465 (664)
                      .-|..|.++..+.+++..|.+.|..
T Consensus       667 ~Kw~~Lg~~al~~~~l~lA~EC~~~  691 (794)
T KOG0276|consen  667 VKWRQLGDAALSAGELPLASECFLR  691 (794)
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHh
Confidence            3344444444444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	664
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	9e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 86.0 bits (211), Expect = 2e-17
 Identities = 28/218 (12%), Positives = 68/218 (31%), Gaps = 4/218 (1%)

Query: 297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF 356
           SP     A ++            +A   +  ++ L  + +   A  K  +    L  A  
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 357 VV---SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA 413
           ++       +   L     Y+ ++  +A  G ++    VL  ++ +   P+   Y+  L 
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208

Query: 414 GYRDRGEWQRTFQ-VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE 472
               + +   T +  L++M   G++    F  V++    +   L                
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268

Query: 473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT 510
           P  +  + L+   +         +L   ++        
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 86.0 bits (211), Expect = 2e-17
 Identities = 20/191 (10%), Positives = 53/191 (27%), Gaps = 4/191 (2%)

Query: 388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMI 447
            A  +      +   P     +R+L     +           +   + +           
Sbjct: 75  MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134

Query: 448 DTF---GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER 504
                  +    HH +        +        +N ++    + G +     +   +++ 
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194

Query: 505 GYFPCTTTYNIMINLLGEQER-WEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDD 563
           G  P   +Y   +  +G Q++    ++R L  M  +GL    +    L+    ++     
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254

Query: 564 AIECLEGLSDQ 574
             +     S  
Sbjct: 255 VHKVKPTFSLP 265

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 84.5 bits (207), Expect = 5e-17
 Identities = 23/203 (11%), Positives = 58/203 (28%), Gaps = 4/203 (1%)

Query: 268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK 327
           L  ++                G      LS +     A       + +   A  +     
Sbjct: 95  LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154

Query: 328 E---SGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG 384
                        YNA++ G+ + G  K+  +V+  ++ +G+ PD  +Y+  +       
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214

Query: 385 R-WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFY 443
           +   +    L++M     K  +   + +L+        +   +V          P     
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274

Query: 444 NVMIDTFGKYNCLHHAMAAFDRM 466
           + ++      +           +
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPL 297

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 71.4 bits (173), Expect = 6e-13
 Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 8/157 (5%)

Query: 494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD 553
           A  L +  ++    P       ++     +   +  +   G      L            
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 554 IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAV 613
               + +   A   L              R      +    N+++  +       E   V
Sbjct: 136 CCLLTDQLPLAHHLLV--------VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187

Query: 614 LQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL 650
           L  +K+ GL PD+++Y   ++ + R D+        L
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 60.6 bits (145), Expect = 1e-09
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 3/209 (1%)

Query: 195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSL-LQKLY 253
               L+        L+       +  Q              +    T+++  +  L  ++
Sbjct: 94  QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153

Query: 254 KEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNS 313
                 +  L   + N V++G+A+ G   + +  L M +  GL+P   +YAA +  +   
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213

Query: 314 GRTIEA-EAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHT 372
            +     E   E++ + GLK +      LL    +   LK    V         LP    
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273

Query: 373 YS-LLIDAYANAGRWESARIVLKEMEVSH 400
            S LL D YA  GR    ++ L    +  
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.1 bits (128), Expect = 1e-07
 Identities = 35/249 (14%), Positives = 84/249 (33%), Gaps = 15/249 (6%)

Query: 68  EEDDDDVLSLQKQRYDFTPLLNFLSENSNSESAS-ALASSPSSLN-RVEFKLAESYRAVP 125
           +  + D  + Q +       L    ++   ++ +  L   P  L+ ++   L +  R  P
Sbjct: 28  KILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAP 87

Query: 126 APLWHSLLKNL---CSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEA 182
              W   L  L        S+D+  A  S           +            +++L  A
Sbjct: 88  ESPWEEQLARLLQEAPGKLSLDVEQAP-SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146

Query: 183 FLLSQRQR--------LTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLV 234
             L             LT   YNA++   AR    ++ + ++  ++  G   D ++Y+  
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206

Query: 235 IQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV 294
           +Q + R ++ D+  +++  +++  + ++L       ++    +A       +        
Sbjct: 207 LQCMGRQDQ-DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265

Query: 295 GLSPKTATY 303
              P     
Sbjct: 266 PQLPPPVNT 274

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 3e-11
 Identities = 52/380 (13%), Positives = 106/380 (27%), Gaps = 102/380 (26%)

Query: 338 YNALLKGYVKMGYLKDAEFV-VSEMERSGVL-------------PDEHTYSLLIDAYANA 383
           Y  +L  +    ++ + +   V +M +S +L                 T   L     + 
Sbjct: 18  YKDILSVFED-AFVDNFDCKDVQDMPKS-ILSKEEIDHIIMSKDAVSGTL-RLFWTLLSK 74

Query: 384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFY 443
                  +V K +E        F+ S I    R      R +   ++   +  +     Y
Sbjct: 75  Q----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-Y 129

Query: 444 NVM-IDTFGKY-NCLH----------HAMA-------AFDRMLSEGIE---PDTITWNTL 481
           NV  +  + K    L             +        A D  LS  ++      I W  L
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE-------RWEDVKRLLG 534
                     +  E + E +Q          Y I  N     +       R   ++  L 
Sbjct: 190 -------KNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 535 NMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSD-QAVNAF----RVMRT----- 584
            +       N +    LV          +       + + +A NAF    +++ T     
Sbjct: 236 RLLKSKPYENCL----LV--------LLN-------VQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 585 -----DGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALI-- 637
                     ++++L+        D+            +   L  +V+T      ++I  
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 638 RVDKFHKVFSSYLFFNIYKM 657
            +      + ++   N  K+
Sbjct: 336 SIRDGLATWDNWKHVNCDKL 355

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 5e-09
 Identities = 68/367 (18%), Positives = 107/367 (29%), Gaps = 118/367 (32%)

Query: 32  AFSVSTITGITTATASGESSFSSSSFTSKQNDTEEEEEDDDDVLSLQKQRYDFTPLLNFL 91
           AF++S    +TT         S+++ T    D        D+V SL         LL +L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---------LLKYL 311

Query: 92  SENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSS-NSSIDLAYAVV 150
                      L ++P  L+ +    AES R   A  W +     C    + I+ +  V+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSII----AESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVL 366

Query: 151 S----------------------------WLQKH--------NLCYSYELL------YSI 168
                                        W            N  + Y L+       +I
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 169 LIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDF 228
            I ++    K+      +  + +    YN  I     +DDL            D Y    
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVD-HYN--IPKTFDSDDL-------IPPYLDQYFYSH 476

Query: 229 INYSL-------------------------VIQSLTRTNKIDS--SLLQ--KLYKEIECD 259
           I + L                         +    T  N   S  + LQ  K YK   CD
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 260 KIELDGQLLNDVIVGFAKAGDASKAMRFL-GMAQGVGLSPKTATYAAVITALSNSGRTIE 318
                 +L+N +             + FL  + + +  S  T     +  AL       E
Sbjct: 537 NDPKYERLVNAI-------------LDFLPKIEENLICSKYTDL---LRIALMA-----E 575

Query: 319 AEAVFEE 325
            EA+FEE
Sbjct: 576 DEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 62/492 (12%), Positives = 147/492 (29%), Gaps = 157/492 (31%)

Query: 66  EEEEDDDDVLSLQKQRYDFTPLLNFLSENSNSESASALASSPSSLNRVEFKLAESYRAVP 125
                +  +  LQK  Y   P  N+ S + +S +          ++ ++ +L    ++ P
Sbjct: 191 NCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNI------KLRIHSIQAELRRLLKSKP 242

Query: 126 APLWHSL--LKNLCSSN---------------SSIDLAYAVVSWLQKHNLCYSYELLYSI 168
               + L  L N+ ++                    +   + +    H    S +     
Sbjct: 243 YE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH---ISLDHHSMT 297

Query: 169 LIHALGRSEKLYEAFLLSQRQRL-------TPLTYNALISACARNDDLEKALNLMSKMRQ 221
           L       + L   +L  + Q L        P    ++I+   R+               
Sbjct: 298 LTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDG----------LATW 344

Query: 222 DGY-HCDFINYSLVIQ-SLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAG 279
           D + H +    + +I+ SL   N ++ +  +K++  +               +  F    
Sbjct: 345 DNWKHVNCDKLTTIIESSL---NVLEPAEYRKMFDRL--------------SV--FPP-- 383

Query: 280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL-----KPR 334
                           +         +++ +       +   V  +L +  L     K  
Sbjct: 384 -------------SAHIPTI------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLK 394
           T +  ++        YL+    +  ++E    L   H    ++D Y     ++S  ++  
Sbjct: 425 TISIPSI--------YLE----LKVKLENEYAL---H--RSIVDHYNIPKTFDSDDLIPP 467

Query: 395 EMEVSHAKPNSFIYSRILAGY----RDRGEWQRTFQVL--------KEMKSSGV--EPDT 440
            ++        + YS I  G+     +  E    F+++        ++++          
Sbjct: 468 YLD-------QYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 441 HFYNVMID--TFGKYNCLHHAMAAFDRMLSE------GIEPDTITWNTLIDCHFKC---- 488
              N +     +  Y C +     ++R+++        IE +      LI   +      
Sbjct: 519 SILNTLQQLKFYKPYICDND--PKYERLVNAILDFLPKIEEN------LICSKYTDLLRI 570

Query: 489 GRYDRAEELFEE 500
                 E +FEE
Sbjct: 571 ALMAEDEAIFEE 582

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 38/269 (14%), Positives = 77/269 (28%), Gaps = 31/269 (11%)

Query: 372 TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSF---IYSRILAG--YRDRGEW----- 421
             S+L +     G    +  ++++ E    + + +   ++S I        +G       
Sbjct: 55  ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 114

Query: 422 --QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDR---MLSEGIEPDTI 476
             ++ FQ++ E     +        +       +  L  A A+      +LS       +
Sbjct: 115 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174

Query: 477 TW-NTLIDCHFKCGRYDRAEELFEE----MQERGYFPCTTTY--NIMINLLGEQERWEDV 529
                LI C    G  D A          +    Y     +    + +            
Sbjct: 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234

Query: 530 KRLLGNMRAQGLLPNVVT---YTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDG 586
              L +        N      +  +       G F+ A   LE L++ A +   +     
Sbjct: 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL-- 292

Query: 587 LKPSNLALNSLINAFGEDQRDAEAFAVLQ 615
               N  L  L   + +  R ++A  VL 
Sbjct: 293 ----NRNLLLLNQLYWQAGRKSDAQRVLL 317

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 40/275 (14%), Positives = 83/275 (30%), Gaps = 20/275 (7%)

Query: 296 LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE 355
            SP+      V    +   +  +   V +E+K S   P  +A     +            
Sbjct: 28  SSPERDVERDVFLYRAYLAQR-KYGVVLDEIKPSS-APELQAVRMFAEYLASHSRRDAIV 85

Query: 356 FVVSEMERSGVLPDEHTYSLLI-DAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG 414
             +       V     T+ L+    Y      ++A   L + +      +    +  +  
Sbjct: 86  AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD------SLECMAMTVQI 139

Query: 415 YRDRGEWQRTFQVLKEMKSSGVEPD---THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI 471
                      + LK+M+    + D   T      +        L  A   F  M  +  
Sbjct: 140 LLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC- 196

Query: 472 EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR 531
            P  +  N    CH   GR++ AE + +E  ++      T  N+++      +  E   R
Sbjct: 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256

Query: 532 LLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE 566
            L   + +    +   +  + +   +   FD  + 
Sbjct: 257 YLS--QLKDAHRS---HPFIKEYRAKENDFDRLVL 286

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 27/247 (10%)

Query: 369 DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGY-RDRGEWQRTFQV 427
           D      L  AY    ++      +K       +       R+ A Y             
Sbjct: 33  DVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAV-----RMFAEYLASHSRRDAIVAE 87

Query: 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK 487
           L    S  V+     + +M  +        +       + +             +    K
Sbjct: 88  LDREMSRSVDVTNTTFLLMAAS-----IYFYDQNPDAALRTLHQGDSLECMAMTVQILLK 142

Query: 488 CGRYDRAEELFEEMQERG-YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV 546
             R D A +  ++MQ++      T      ++L    E+ +D   +   M A    P ++
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLL 201

Query: 547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL-ALNSLINAFGEDQ 605
                   +   GR++ A   L+    +A++             +   L +L+       
Sbjct: 202 LLNGQAACHMAQGRWEAAEGVLQ----EALD---------KDSGHPETLINLVVLSQHLG 248

Query: 606 RDAEAFA 612
           +  E   
Sbjct: 249 KPPEVTN 255

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 57/387 (14%), Positives = 97/387 (25%), Gaps = 73/387 (18%)

Query: 249 LQKLYKEIECDKIELD-GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTA-TYAAV 306
           L  +  E+    ++LD GQLL     G   A +A  A R       + L+P+     A+ 
Sbjct: 19  LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH 78

Query: 307 ITALSNSGRTIEAEAVFEELKESGLKPR-TKAYNALLKGYVKMGYLKDAEFVVSEMERSG 365
                          V    +  GL P+   A  +   G   +  ++             
Sbjct: 79  DGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALETVQRL----------- 125

Query: 366 VLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFI-YSRILAGYRDRGEWQRT 424
                      +     A         L         P   +  +    G +     Q  
Sbjct: 126 -----------LPVLCQA-------HGLT--------PEQVVAIASHDGGKQALETVQAL 159

Query: 425 FQVLKEMKSSGVEPD-THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLI 482
             VL   ++ G+ P+                 +   +    +    G+ P   +   +  
Sbjct: 160 LPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNG 215

Query: 483 DCHFKCGRYDRAEELFEEMQERGYFP-CTTTYNIMINLLGEQERWED-VKRLLGNMRAQG 540
                     R   +    Q  G  P                E  +  +  L    +A G
Sbjct: 216 GGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC---QAHG 270

Query: 541 LLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLI 598
           L P  VV   +              +  L     QA          GL P   +A+ S  
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVL----CQAH---------GLTPQQVVAIASNG 317

Query: 599 NAFGEDQRDAEAFAVLQYMKENGLKPD 625
                 +       V    + +GL P 
Sbjct: 318 GGKQALETVQRLLPV--LCQAHGLTPQ 342

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 56/428 (13%), Positives = 107/428 (25%), Gaps = 69/428 (16%)

Query: 171 HALGRSEKLYEAFLLSQRQRLTP---LTYNALISACARNDDLEKALNLMSK------MRQ 221
            AL   ++L       Q   LTP   +   +        + +++ L ++ +       + 
Sbjct: 83  QALETVQRLLPVL--CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140

Query: 222 DGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDA 281
                   ++    Q+L     +   L Q     +  +        +     G       
Sbjct: 141 VAIA----SHDGGKQALETVQALLPVLCQAH--GLTPE----QVVAIASNGGGKQALETV 190

Query: 282 SKAMRFLGMAQGVGLSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESGLKPR-TKAYN 339
            + +  L  A   GL+P+     A+                V    +  GL P+   A  
Sbjct: 191 QRLLPVLCQA--HGLTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIA 246

Query: 340 ALLKGYVKMGYLKDA------------EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE 387
           +   G   +  ++              + VV+    SG      T   L+     A    
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQA---- 302

Query: 388 SARIVLKEMEVSHAKPNSF--IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD-THFYN 444
                L         P     I S      +     QR   VL   ++ G+ P       
Sbjct: 303 ---HGLT--------PQQVVAIASNGGG-KQALETVQRLLPVLC--QAHGLTPQQVVAIA 348

Query: 445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQE 503
                      +   +    +    G+ P+  +   +            R   +    Q 
Sbjct: 349 SHDGGKQALETVQRLLPVLCQAH--GLTPEQVVAIASNGGGKQALETVQRLLPVLC--QA 404

Query: 504 RGYFP-CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRF 561
            G  P                E  +  + L    +A GL P  VV   +           
Sbjct: 405 HGLTPEQVVAIASHDGGKQALETVQ--RLLPVLCQAHGLTPQQVVAIASNGGGRPALESI 462

Query: 562 DDAIECLE 569
              +   +
Sbjct: 463 VAQLSRPD 470

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 45/327 (13%), Positives = 106/327 (32%), Gaps = 43/327 (13%)

Query: 303 YAAVITALSNSGRTIEAEAVFEELKESGLKP-RTKAYNALLKGYVKMGYLKDAEFVVSEM 361
             ++      +        +   + E    P         +   V++    +  ++  ++
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVME--KDPFHASCLPVHIGTLVELNKANELFYLSHKL 82

Query: 362 ERSGVLPDEH-TYSLLIDAYANAGR-WESARIVLKEMEVSHAKPNSFIYSRILAG--YRD 417
               + P    ++  +   Y   G   E AR  L +   +  +   +  + I  G  +  
Sbjct: 83  --VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK--ATTLEKT-YGPAWIAYGHSFAV 137

Query: 418 RGEWQRTFQVLKEMKSSGVEPDTHF-YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DT 475
             E  +         ++ +    H     +   +G  N    A   F + LS  I P D 
Sbjct: 138 ESEHDQAMAAYF--TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDP 193

Query: 476 ITWNTLIDCHFKCGRYDRAEELFEE--------MQERGYFPCTTTYNIMINLLGEQERWE 527
              + +    F+ G +  AE+ F +          E          N + ++  + +++ 
Sbjct: 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253

Query: 528 DVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDG 586
           +        +A  L+P    TY+ +  I+   G F++A++        A+          
Sbjct: 254 EALDYH--RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF----HTALG--------- 298

Query: 587 LKPSN-LALNSLINAFGEDQRDAEAFA 612
           L+  +  ++  L +       D+EA+ 
Sbjct: 299 LRRDDTFSVTMLGHCIEMYIGDSEAYI 325

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 30/206 (14%), Positives = 55/206 (26%), Gaps = 10/206 (4%)

Query: 368 PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV 427
            +     L    Y N   ++ A+   KE          +     L         +    V
Sbjct: 198 LEASMCYLRGQVYTNLSNFDRAKECYKE--ALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255

Query: 428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS--EGIEPDTITWNTLIDCH 485
           LK   S+  + D  F   +             +   +  LS   G+E  +       D  
Sbjct: 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315

Query: 486 FKCGRYDRAEELFEEMQERGYFP-CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN 544
           F   R+     +  ++ E    P     Y + +  L E      +  +          P 
Sbjct: 316 FVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISN--DLVDRHPE 371

Query: 545 -VVTYTTLVDIYGQSGRFDDAIECLE 569
             VT+  +   Y    +  +A     
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFS 397

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 81/560 (14%), Positives = 163/560 (29%), Gaps = 55/560 (9%)

Query: 34  SVSTITGITTATASGESSFSSSSFTSKQNDTEEEEEDDDDVL------SLQKQRYDFTPL 87
           S  +   I+  T    ++ +  SF  ++N    +    +D L      +L +Q+Y     
Sbjct: 46  SQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK-CAA 104

Query: 88  LNF---LSENSNSESASALASSPSSLNRVEFKLAESYRAVPAPLWHSLLKNLCSSNSSID 144
                 L    N   A  LA       +V     +  RA    L    L N   S++   
Sbjct: 105 FVGEKVLDITGNPNDAFWLA-------QVYCCTGDYARAK-CLLTKEDLYN--RSSACRY 154

Query: 145 LAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACA 204
           LA   +  L       +   L           +   +  +     +L             
Sbjct: 155 LAAFCLVKLYDWQGALN---LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT 211

Query: 205 RNDDLEKALNLMSK-MRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIEL 263
              + ++A     + +  D    +  +  +    LT   + D  +L+  Y     +    
Sbjct: 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL-VLKLNYSTYSKEDAAF 270

Query: 264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVF 323
              L    +   +   +  +A  +L    G  L   +         L    R I+  A+ 
Sbjct: 271 LRSLYMLKLNKTSHEDELRRAEDYLSSING--LEKSSDLLLCKADTLFVRSRFIDVLAIT 328

Query: 324 EELKESGLKP-RTKAYNALLKGYVKMGYLKDAEFVVSE-MERSGVLPDEH-TYSLLIDAY 380
            ++ E  + P     Y   L    + G       + ++ ++R    P++  T+  +   Y
Sbjct: 329 TKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYY 383

Query: 381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG--YRDRGEWQRTFQVLKEMKSSGVEP 438
               +   AR    +   S   P  F  + I     +   GE  +         ++ +  
Sbjct: 384 LCVNKISEARRYFSK--SSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYT--TAARLFQ 438

Query: 439 DTHF-YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DTITWNTLIDCHFKCGRYDRAEE 496
            TH  Y  +     +   +  A        +  +   D +  N L    F       A  
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAIN 496

Query: 497 LFEE------MQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYT 549
            F+         +    P   T+  + +   + + ++     L   +   L  N    +T
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL--NQGLLLSTNDANVHT 554

Query: 550 TLVDIYGQSGRFDDAIECLE 569
            +  +Y        AI  L 
Sbjct: 555 AIALVYLHKKIPGLAITHLH 574

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 25/171 (14%)

Query: 459 AMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEE-MQERGYFPCTTTYNIM 516
           A     ++     EPD T     L   HF+C R DR+       +++         Y+ +
Sbjct: 18  AERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE--AYSNL 73

Query: 517 INLLGEQERWEDVKRLLGNMRAQGLLPNVV-TYTTLVDIYGQSGRFDDAIECLEGLSDQA 575
            N+  E+ + ++         A  L P+ +  Y  L      +G  + A++        A
Sbjct: 74  GNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----VSA 127

Query: 576 VNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD 625
           +            P      + L N      R  EA A      E   +P+
Sbjct: 128 LQ---------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPN 167

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 66/329 (20%), Positives = 107/329 (32%), Gaps = 45/329 (13%)

Query: 309 ALSNSGRTIEAEAVFEELKESGLKPR-TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL 367
               +G    AE    +L     +P  T     L   + +   L  +         +   
Sbjct: 8   REYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSA---HFSTLAIKQ 62

Query: 368 -PDEH-TYSLLIDAYANAGRWESARIVLKEMEVSHA---KPN-SFIYSRILAGYRDRGEW 421
            P     YS L + Y   G+ + A    +     HA   KP+    Y  + A     G+ 
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYR-----HALRLKPDFIDGYINLAAALVAAGDM 117

Query: 422 QRTFQVLKEMKSSGVEPDTH-FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWN 479
           +   Q      +    PD +   + + +       L  A A + + +    +P+  + W+
Sbjct: 118 EGAVQAYV--SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWS 173

Query: 480 TLIDCHFKCGRYDRAEELFEEMQERGYFP-CTTTYNIMINLLGEQERWEDVKRLLGNMRA 538
            L       G    A   FE+       P     Y  + N+L E   ++        +RA
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAY--LRA 229

Query: 539 QGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNS 596
             L PN  V +  L  +Y + G  D AI+       +A+          L+P    A  +
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTY----RRAIE---------LQPHFPDAYCN 276

Query: 597 LINAFGEDQRDAEAFAVLQYMKENGLKPD 625
           L NA  E    AEA     Y     L P 
Sbjct: 277 LANALKEKGSVAEAEDC--YNTALRLCPT 303

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 29/196 (14%), Positives = 53/196 (27%), Gaps = 26/196 (13%)

Query: 459 AMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP-CTTTYNIM 516
            +    +    G+ P   +   +            R   +    Q  G  P         
Sbjct: 211 LLPVLCQAH--GLTPAQVVAIASHDGGKQALETMQRLLPVLC--QAHGLPPDQVVAIASN 266

Query: 517 INLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYGQSGRFDDAIECLEGLSDQA 575
           I      E  + +  +L   +A GL P+ VV   +              +  L     QA
Sbjct: 267 IGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASHGGGKQALETVQRLLPVL----CQA 320

Query: 576 VNAFRVMRTDGLKPSNL-ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLM 633
                     GL P  + A+ S        +       +    + +GL PD VV   +  
Sbjct: 321 H---------GLTPDQVVAIASHDGGKQALETVQR--LLPVLCQAHGLTPDQVVAIASNG 369

Query: 634 KALIRVDKFHKVFSSY 649
                ++   ++    
Sbjct: 370 GGKQALETVQRLLPVL 385

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 9/109 (8%)

Query: 477 TWNTLIDCHFKCGRYDRAEELFEE----MQERGYFPCTTTYNIMINLLGEQERWEDVKRL 532
               L     K G+  +A +  EE    +  R +      +  +  +  E      +  L
Sbjct: 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322

Query: 533 LGNMRAQGLLPNVV-TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFR 580
           L     + L   +     +   ++  S  F+ A         + + A  
Sbjct: 323 LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYR----KVLKAQE 367

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.0 bits (97), Expect = 9e-04
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 14/111 (12%)

Query: 473 PDT-ITWNTLIDCHFKCGRYDRAEELFE----EMQERGY---FPCT-TTYNIMINLLGEQ 523
           P+   T N L  C+ K G++ +AE L++       ER +          +         +
Sbjct: 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251

Query: 524 ERWEDVKRLL---GNMRAQGLL-PNVV-TYTTLVDIYGQSGRFDDAIECLE 569
            + +D        G  +A  +  P V  T   L  +Y + G+F+ A    E
Sbjct: 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	664
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.84
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.73
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.72
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.71
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.71
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.7
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.57
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.47
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.47
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.45
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.41
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.39
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.38
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.35
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.34
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.34
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.33
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.3
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.28
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.26
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.26
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.22
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.2
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.2
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.14
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.1
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.04
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.04
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.97
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.92
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.85
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.81
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.79
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.78
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.75
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.71
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.71
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.69
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.67
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.64
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.62
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.59
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.58
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.56
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.51
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.48
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.41
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.4
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.38
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.36
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.36
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.33
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.32
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.31
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.23
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.21
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.19
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.19
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.16
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.16
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.1
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.07
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.99
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.96
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.96
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.95
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.95
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.94
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.93
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.92
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.91
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.91
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.89
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.84
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.82
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.77
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.69
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.65
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.64
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.63
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.62
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.58
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.57
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.52
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.46
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.36
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.33
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.93
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.82
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.79
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.77
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.74
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.42
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.27
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.26
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.55
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.49
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.29
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.04
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.39
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.1
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.07
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.87
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.5
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.99
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.81
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.03
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	90.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.09
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.64
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.91
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	88.88
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.76
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.1
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.06
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.71
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.49
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	86.4
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.23
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.08
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.02
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	82.36
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.81
2p58_C	116	Putative type III secretion protein YSCG; type III	81.69
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	81.08

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-37  Score=342.27  Aligned_cols=471  Identities=11%  Similarity=-0.012  Sum_probs=353.8

Q ss_pred             hHHHHHHHHHHHcccCCHHHHHHh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 006012          162 YELLYSILIHALGRSEKLYEAFLL---SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSL  238 (664)
Q Consensus       162 ~~~~~~~li~~~~~~~~~~~A~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  238 (664)
                      +...++.++..|.+.|++++|..+   .....|+..+|+.++.+|.+.|++++|+.+|+++...  +++..+++.++..+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  160 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCL  160 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHH
Confidence            345566666666666666666554   1112335556666666666666666666666665432  45556666666666


Q ss_pred             HhcCCCChHHHHHHHHHHHh-C--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006012          239 TRTNKIDSSLLQKLYKEIEC-D--------------KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATY  303 (664)
Q Consensus       239 ~~~g~~~~~~~~~l~~~~~~-~--------------~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~  303 (664)
                      .+.|+++++  .++|+++.. .              +.+.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+
T Consensus       161 ~~~g~~~~A--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  237 (597)
T 2xpi_A          161 VKLYDWQGA--LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF  237 (597)
T ss_dssp             HHTTCHHHH--HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHhhHHHH--HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence            666665432  355552111 1              112345566666666666666666666666665543 2234444


Q ss_pred             HHHHHHHHhcCChHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          304 AAVITALSNSGRTIEAE--AV-FEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY  380 (664)
Q Consensus       304 ~~li~~~~~~g~~~~A~--~l-~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  380 (664)
                      ..+...+...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.  .++..+|+.++.+|
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence            44444333322221111  11 333333333334455666677888999999999999999875  47999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006012          381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAM  460 (664)
Q Consensus       381 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  460 (664)
                      .+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence            99999999999999998776 4477889999999999999999999999998654 567899999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          461 AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       461 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      ++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+..
T Consensus       394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  471 (597)
T 2xpi_A          394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF  471 (597)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999998754 4568899999999999999999999999999876 5688999999999999999999999999999864


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS--NLALNSLINAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  618 (664)
                      . .+..+|+.++.+|.+.|++++|+++++...+       ...+.+..|+  ..+|..++.+|.+.|++++|+++++++.
T Consensus       472 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (597)
T 2xpi_A          472 Q-YDPLLLNELGVVAFNKSDMQTAINHFQNALL-------LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL  543 (597)
T ss_dssp             C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3 3789999999999999999999988653322       2223367788  7899999999999999999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012          619 ENGLKPDVVTYTTLMKALIRVDKFHKVFSSYLFF  652 (664)
Q Consensus       619 ~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~~~  652 (664)
                      +.+ +.+..+|..++.+|.+.|++++|.+.|+..
T Consensus       544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            854 458899999999999999999999999844

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-36  Score=333.58  Aligned_cols=482  Identities=11%  Similarity=0.021  Sum_probs=402.6

Q ss_pred             hHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hC--CCCCCHHHHHHHHHHHH
Q 006012          128 LWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQ--RQRLTPLTYNALISACA  204 (664)
Q Consensus       128 ~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~--~~~~~~~~~~~li~~~~  204 (664)
                      .|..++.. +...++++.|..++..+.+..  |. ...+..++.+|.+.|++++|..+ ..  ..++++.+|+.++.+|.
T Consensus        86 ~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  161 (597)
T 2xpi_A           86 YLRLWRHD-ALMQQQYKCAAFVGEKVLDIT--GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV  161 (597)
T ss_dssp             HHHHHHHH-HHHTTCHHHHHHHHHHHHHHH--CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHccCchHHHHHHHHHHhhC--CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence            34555554 446789999999999998755  43 46778899999999999999988 22  25788999999999999


Q ss_pred             HcCCHHHHHHHHHHHHH-c--------------CCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 006012          205 RNDDLEKALNLMSKMRQ-D--------------GYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLN  269 (664)
Q Consensus       205 ~~g~~~~A~~~~~~m~~-~--------------g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~  269 (664)
                      +.|++++|+.+|+++.. .              |.+++..+|..++.++.+.|+.++  |..+|+.+.+.+ +.+...+.
T Consensus       162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~-p~~~~~~~  238 (597)
T 2xpi_A          162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR--AKECYKEALMVD-AKCYEAFD  238 (597)
T ss_dssp             HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-chhhHHHH
Confidence            99999999999995322 1              223457899999999999999855  559999998764 34566777


Q ss_pred             HHHHHHHHcCCHHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          270 DVIVGFAKAGDASKAMR--F-LGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~--~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      .+...+...++.+.+..  + +..+...+......+|+.++..|.+.|++++|.++|+++.+.  +++..+++.++.+|.
T Consensus       239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~  316 (597)
T 2xpi_A          239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF  316 (597)
T ss_dssp             HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred             HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence            77665554433333222  1 455555444555667888899999999999999999999876  579999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQ  426 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  426 (664)
                      +.|++++|.++|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|.+
T Consensus       317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  394 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR  394 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999987644 78889999999999999999999999998654 5678999999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012          427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY  506 (664)
Q Consensus       427 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  506 (664)
                      +|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. 
T Consensus       395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  471 (597)
T 2xpi_A          395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-  471 (597)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            999998754 4578899999999999999999999999999875 4578899999999999999999999999999876 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHH
Q 006012          507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLLPN--VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFR  580 (664)
Q Consensus       507 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~  580 (664)
                      +.+..+|+.++..|.+.|++++|.++++++.+.    +..|+  ..+|..++.+|.+.|++++|++.++           
T Consensus       472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------  540 (597)
T 2xpi_A          472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN-----------  540 (597)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH-----------
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH-----------
Confidence            568999999999999999999999999999876    66787  7899999999999999999988854           


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 006012          581 VMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALI  637 (664)
Q Consensus       581 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~  637 (664)
                      ++.+.+ ..+..+|..+..+|.+.|++++|.++++++.+  +.| +...+..+..+|.
T Consensus       541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          541 QGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred             HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence            444322 23788999999999999999999999999998  445 5667777766553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=1.5e-29  Score=269.38  Aligned_cols=202  Identities=15%  Similarity=0.213  Sum_probs=123.0

Q ss_pred             HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHH
Q 006012          427 VLKEMKSSGVEPDT-HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR---------YDRAEE  496 (664)
Q Consensus       427 ~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~A~~  496 (664)
                      +.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+.         +++|.+
T Consensus        12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~   91 (501)
T 4g26_A           12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD   91 (501)
T ss_dssp             ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence            33444444433322 23455555555556666666666665555555666666666655554433         456666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHH
Q 006012          497 LFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV  576 (664)
Q Consensus       497 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~  576 (664)
                      +|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..||+++|.+|++.|++++|.++         
T Consensus        92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l---------  162 (501)
T 4g26_A           92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV---------  162 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH---------
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH---------
Confidence            66666666666666666666666666666666666666666666666767777777777766666665554         


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV  639 (664)
Q Consensus       577 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~  639 (664)
                        |++|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus       163 --~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          163 --DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             --HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             --HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence              5566666677777777777777777777777777777777666777777777666666553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=5e-29  Score=265.32  Aligned_cols=213  Identities=16%  Similarity=0.180  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          319 AEAVFEELKESGLKPRT-KAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       319 A~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      +..+.+++.+.+..... ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++        
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------   80 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------   80 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence            33444444444443322 235555566666666666666666666556666666666666555544431100        


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          398 VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT  477 (664)
Q Consensus       398 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  477 (664)
                                        .+.+.+++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus        81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t  142 (501)
T 4g26_A           81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS  142 (501)
T ss_dssp             ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence                              01112455555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ  557 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  557 (664)
                      ||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus       143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=5.6e-25  Score=229.32  Aligned_cols=382  Identities=14%  Similarity=0.099  Sum_probs=287.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006012          199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA  278 (664)
Q Consensus       199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~  278 (664)
                      +...+.+.|++++|+..++++.+..  |+.                                    ...+..+...+...
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~------------------------------------~~~~~~l~~~~~~~   46 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE--PDN------------------------------------TGVLLLLSSIHFQC   46 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTC------------------------------------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCC------------------------------------HHHHHHHHHHHHHc
Confidence            3456778888888888888877652  332                                    23334444556677


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV  358 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  358 (664)
                      |++++|...++...+.. +.+..+|..+...+.+.|++++|.+.|+++.+... .+..+|..+..++.+.|++++|.+.+
T Consensus        47 ~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~  124 (388)
T 1w3b_A           47 RRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAY  124 (388)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77888888777776643 45677788888888888888888888888776532 24567778888888888888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012          359 SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP  438 (664)
Q Consensus       359 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~  438 (664)
                      +++.+.... +...+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.+ +.
T Consensus       125 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~  201 (388)
T 1w3b_A          125 VSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN  201 (388)
T ss_dssp             HHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence            887765432 45566777777777888888888888887654 3456778888888888888888888888887754 44


Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN  518 (664)
Q Consensus       439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  518 (664)
                      +...+..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..
T Consensus       202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  279 (388)
T 1w3b_A          202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLAN  279 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            56778888888888888888888888887654 3357788888888888899999999988888875 446778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 006012          519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSL  597 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l  597 (664)
                      .+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|++.++           ++.+  ..| +..+|..+
T Consensus       280 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------~al~--~~p~~~~~~~~l  345 (388)
T 1w3b_A          280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYR-----------KALE--VFPEFAAAHSNL  345 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH-----------HHTT--SCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHH-----------HHHh--cCCCcHHHHHHH
Confidence            8888899999999998888763 3477888888888999988888877643           3333  234 46688889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006012          598 INAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDK  641 (664)
Q Consensus       598 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~  641 (664)
                      ..+|.+.|++++|+..++++.+  +.| +...|..+...+.+.|+
T Consensus       346 ~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          346 ASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence            9999999999999999999987  445 56777778777766653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=4.6e-25  Score=229.97  Aligned_cols=373  Identities=12%  Similarity=0.043  Sum_probs=247.6

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN  214 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~  214 (664)
                      ..|+++.|.+.+..+.+..  |.+...+..+...+.+.|++++|...    ....+.+..+|..+...|.+.|++++|+.
T Consensus        11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~   88 (388)
T 1w3b_A           11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            4578888888888888776  66667777788888888888888766    34456677888888888888888888888


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012          215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV  294 (664)
Q Consensus       215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  294 (664)
                      .|+++.+..  |+                                    +...|..+..++.+.|++++|.+.|+++.+.
T Consensus        89 ~~~~al~~~--p~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (388)
T 1w3b_A           89 HYRHALRLK--PD------------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHC--TT------------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--cc------------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888887642  32                                    2333444555555556666666666655553


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS  374 (664)
Q Consensus       295 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  374 (664)
                      . +.+...+..+...+...|++++|.+.|+++.+... .+..+|+.+...+...|++++|...|+++.+.+.. +...|.
T Consensus       131 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~  207 (388)
T 1w3b_A          131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYI  207 (388)
T ss_dssp             C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence            2 22344555566666666666666666666665422 24556666666666666666666666666654322 455666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006012          375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN  454 (664)
Q Consensus       375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  454 (664)
                      .+...+...|++++|...+++..... +.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|
T Consensus       208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  285 (388)
T 1w3b_A          208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence            66666666666666666666665543 2345666666666777777777777777666653 334566777777777777


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          455 CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG  534 (664)
Q Consensus       455 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  534 (664)
                      ++++|...++++.+.. +.+..+++.+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++
T Consensus       286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (388)
T 1w3b_A          286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777777777776653 4466677777777777777777777777777654 4456677777777777777777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          535 NMRAQGLLPNVVTYTTLVDIYGQSG  559 (664)
Q Consensus       535 ~m~~~~~~p~~~~~~~li~~~~~~g  559 (664)
                      ++.+... -+...|..+...+.+.|
T Consensus       364 ~a~~~~p-~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          364 EAIRISP-TFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred             HHHhhCC-CCHHHHHhHHHHHHHcc
Confidence            7776432 14566666666655544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7e-22  Score=213.72  Aligned_cols=437  Identities=11%  Similarity=0.030  Sum_probs=296.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012          193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI  272 (664)
Q Consensus       193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li  272 (664)
                      ...|..+...+.+.|++++|+..|+++.+.+  |+...|..+..++.+.|+++.  +...++.+.+.. +.+...+..+.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~l~   80 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKK--VVEMSTKALELK-PDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHH--HHHHHHHHhccC-hHHHHHHHHHH
Confidence            3467778888888899999999998888764  566666666666666666643  335566555543 44556677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK  352 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  352 (664)
                      .+|.+.|++++|...|+.+.+.+ +++......++..+.+......+.+.+..+...+..|+...++.-...........
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP  159 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence            77777777777777777776654 33444444444444443333333333333222221121111111111111111111


Q ss_pred             HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----cCC--------CCCHHH
Q 006012          353 DAEFVVSEMERSGV---------LPDEHTYSLLIDAYAN---AGRWESARIVLKEMEV-----SHA--------KPNSFI  407 (664)
Q Consensus       353 ~a~~~~~~m~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~~~--------~~~~~~  407 (664)
                      ....+...+.....         ..+...+..+...+..   .|++++|..+|+++..     ...        +.+..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (514)
T 2gw1_A          160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS  239 (514)
T ss_dssp             CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence            11111111111110         1124445445554554   7999999999999887     311        223567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK  487 (664)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  487 (664)
                      +..+...+...|++++|...++.+.+..  |+..++..+...+...|++++|...++.+.+.. +.+...+..+...|..
T Consensus       240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence            7888889999999999999999988764  338888899999999999999999999998765 3467788899999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      .|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...|.+.|++++|...
T Consensus       317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999998876 44677888999999999999999999999988632 2567889999999999999999988


Q ss_pred             HhhhHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          568 LEGLSDQAVNAFRVMRTDGLKPS----NLALNSLINAFGE---DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVD  640 (664)
Q Consensus       568 ~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g  640 (664)
                      ++...+.       ...   .++    ...|..+..++..   .|++++|+..++++.+.. +.+..++..++.++.+.|
T Consensus       395 ~~~a~~~-------~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g  463 (514)
T 2gw1_A          395 YDLAIEL-------ENK---LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQE  463 (514)
T ss_dssp             HHHHHHH-------HHT---SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHh-------hhc---cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence            6533221       111   122    3488899999999   999999999999998842 446788899999999999


Q ss_pred             CHhHHHHHHHH
Q 006012          641 KFHKVFSSYLF  651 (664)
Q Consensus       641 ~~~~A~~~~~~  651 (664)
                      ++++|.+.|+.
T Consensus       464 ~~~~A~~~~~~  474 (514)
T 2gw1_A          464 DIDEAITLFEE  474 (514)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999883

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=1.4e-20  Score=199.95  Aligned_cols=360  Identities=13%  Similarity=0.101  Sum_probs=279.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      +.+...+..+...|.+.|++++|+++|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+. .+...+..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence            4567788889999999999999999999988753 45788899999999999999999999999988653 367888999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 006012          342 LKGYVKMGYLKDAEFVVSEMERSGVLPDE---HTYSLL------------IDAYANAGRWESARIVLKEMEVSHAKPNSF  406 (664)
Q Consensus       342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~  406 (664)
                      ..+|.+.|++++|.+.|+++.+.... +.   ..+..+            ...+.+.|++++|...|+++.... +.+..
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  178 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE  178 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence            99999999999999999999876422 33   555555            344888999999999999998764 45788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL-----  481 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-----  481 (664)
                      .+..+..+|.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...+..+     
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            89999999999999999999999987754 5578899999999999999999999999998754 2345555554     


Q ss_pred             -------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          482 -------IDCHFKCGRYDRAEELFEEMQERGYFPC-----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYT  549 (664)
Q Consensus       482 -------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  549 (664)
                             ...|.+.|++++|...|+++.+..  |+     ...|..+...+.+.|++++|.+.++++.+.. +.+..++.
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~  333 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK  333 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence                   788999999999999999998864  44     4478888899999999999999999998753 23688999


Q ss_pred             HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHH------------HHHhcC-----CHHHHH
Q 006012          550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLIN------------AFGEDQ-----RDAEAF  611 (664)
Q Consensus       550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~------------~~~~~g-----~~~~A~  611 (664)
                      .+..+|.+.|++++|.+.++           ++.+  +.|+ ...+..+..            .|...|     +.+++.
T Consensus       334 ~l~~~~~~~~~~~~A~~~~~-----------~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~  400 (450)
T 2y4t_A          334 DRAEAYLIEEMYDEAIQDYE-----------TAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII  400 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-----------HHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHH-----------HHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence            99999999999999888754           3333  3454 445555552            233344     567778


Q ss_pred             HHHHHH-HHCCCCCC----H-------HHHHHHHHHHHhcCCHhHH
Q 006012          612 AVLQYM-KENGLKPD----V-------VTYTTLMKALIRVDKFHKV  645 (664)
Q Consensus       612 ~~~~~m-~~~g~~p~----~-------~~~~~l~~a~~~~g~~~~A  645 (664)
                      +.++++ .+  ..||    .       ..+..+..+|...++.+++
T Consensus       401 ~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          401 KAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            888763 33  2333    1       2555666666666655543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=1.4e-20  Score=199.87  Aligned_cols=360  Identities=10%  Similarity=0.007  Sum_probs=233.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006012          194 LTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIV  273 (664)
Q Consensus       194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~  273 (664)
                      ..|..++..+.+.|++++|+.+|+++.+.. +.+..+|..+...+...|+.+.  +...++.+.+.+ +.+...+..+..
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKA--ALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            344444444444444444444444444331 2233333344444444443322  223333333322 334566677777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006012          274 GFAKAGDASKAMRFLGMAQGVGLSPKT---ATYAAV------------ITALSNSGRTIEAEAVFEELKESGLKPRTKAY  338 (664)
Q Consensus       274 ~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~  338 (664)
                      +|.+.|++++|.+.|+++.+.. +.+.   ..+..+            ...+.+.|++++|.+.|+++.+... .+...+
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  180 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR  180 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence            7888888888888888877653 2233   455544            3447788888888888888877533 367788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------
Q 006012          339 NALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRI-------  411 (664)
Q Consensus       339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~l-------  411 (664)
                      ..+..+|.+.|++++|.+.++++.+... .+..+|..+...|...|++++|+..|+++.... +.+...+..+       
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence            8888888888888888888888876532 367888888888888888888888888887653 2344444444       


Q ss_pred             -----HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          412 -----LAGYRDRGEWQRTFQVLKEMKSSGVEPD-----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL  481 (664)
Q Consensus       412 -----l~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  481 (664)
                           ...+.+.|++++|...|+++.+..  |+     ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                 778888899999999998887753  33     4477788888889999999999998887653 3467888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHHCCC--
Q 006012          482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL------------LGEQE-----RWEDVKRLLGN-MRAQGL--  541 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~------------~~~~g-----~~~~a~~~~~~-m~~~~~--  541 (664)
                      ..+|.+.|++++|...|+++.+.. +-+...+..+..+            |...|     +.+++.+.+++ ..+...  
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~  414 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN  414 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence            889999999999999999888764 3345566555532            33333     45666777776 333211  


Q ss_pred             CCCH-------HHHHHHHHHHHhcCChHHHH
Q 006012          542 LPNV-------VTYTTLVDIYGQSGRFDDAI  565 (664)
Q Consensus       542 ~p~~-------~~~~~li~~~~~~g~~~~A~  565 (664)
                      .|+.       ..+..+..+|...|+.+++.
T Consensus       415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            1222       25666677777777666543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.3e-20  Score=201.71  Aligned_cols=434  Identities=11%  Similarity=0.008  Sum_probs=292.4

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCH
Q 006012          134 KNLCSSNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDL  209 (664)
Q Consensus       134 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~  209 (664)
                      ...+...|+++.|...+..+++.+  | +..++..+..+|.+.|++++|...    ....+.+..+|..+..+|.+.|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~   89 (514)
T 2gw1_A           13 GNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF   89 (514)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence            334446678888888888888876  3 467788888888888888888776    334566777888888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          210 EKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLG  289 (664)
Q Consensus       210 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~  289 (664)
                      ++|+..|+++.+.+ +++......++..+.+..                                     ....+.+.+.
T Consensus        90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~l~  131 (514)
T 2gw1_A           90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQ-------------------------------------AMSKLKEKFG  131 (514)
T ss_dssp             HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHH-------------------------------------HHHHHTTC--
T ss_pred             HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHH-------------------------------------HHHHHHHHHH
Confidence            88888888888765 334444433333222211                                     1111111111


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 006012          290 MAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL---------KPRTKAYNALLKGYVK---MGYLKDAEFV  357 (664)
Q Consensus       290 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---------~p~~~~~~~li~~~~~---~g~~~~a~~~  357 (664)
                      .+...+..|+...+..................+...+.....         +.+...+..+...+..   .|++++|...
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  211 (514)
T 2gw1_A          132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES  211 (514)
T ss_dssp             -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred             HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence            110000001100000000000000111111111111111100         1124444444444444   7888888888


Q ss_pred             HHHHHH-----CCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          358 VSEMER-----SGVL--------PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRT  424 (664)
Q Consensus       358 ~~~m~~-----~g~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a  424 (664)
                      ++++.+     ..-.        .+..++..+...+...|++++|...++++......  ...+..+...+...|++++|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A  289 (514)
T 2gw1_A          212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEY  289 (514)
T ss_dssp             HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTG
T ss_pred             HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHH
Confidence            888776     3111        13567778888888999999999999988876533  77888888899999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                      ...++.+.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++.+.
T Consensus       290 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  367 (514)
T 2gw1_A          290 YNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK  367 (514)
T ss_dssp             GGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999888764 4567788888999999999999999999998765 345678888999999999999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHhhhHHHHH
Q 006012          505 GYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQ---SGRFDDAIECLEGLSDQAV  576 (664)
Q Consensus       505 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~a~  576 (664)
                      . +.+...+..+...+...|++++|.+.+.++.+.... ++    ..++..+...|.+   .|++++|++.++.      
T Consensus       368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~------  440 (514)
T 2gw1_A          368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK------  440 (514)
T ss_dssp             S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH------
T ss_pred             c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH------
Confidence            5 446778889999999999999999999998875221 12    3488999999999   9999999887653      


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          577 NAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVV  627 (664)
Q Consensus       577 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  627 (664)
                           +.... ..+..+|..+..+|.+.|++++|...++++.+  +.|+..
T Consensus       441 -----a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~  483 (514)
T 2gw1_A          441 -----ASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME  483 (514)
T ss_dssp             -----HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred             -----HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence                 22211 23567889999999999999999999999998  456543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=1.5e-19  Score=196.56  Aligned_cols=430  Identities=12%  Similarity=0.045  Sum_probs=292.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012          193 PLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVI  272 (664)
Q Consensus       193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li  272 (664)
                      ...|..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.+.|+++.  +...++.+.+.. +.+...+..+.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~-p~~~~~~~~la  100 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEK--VIEFTTKALEIK-PDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcC-CchHHHHHHHH
Confidence            4578888999999999999999999998864 3455666667777777777644  346666665543 44566777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES------GLKPRTKAYNALLKGYV  346 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------~~~p~~~~~~~li~~~~  346 (664)
                      .+|...|++++|++.|+. ...  .|+  .....+..+...+...+|...++++...      ...|+..    .+..+.
T Consensus       101 ~~~~~~g~~~~A~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~  171 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSV-LSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF  171 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH-Hhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence            777777777777777753 221  222  1222244455555566677777766542      1222322    233334


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCC-------HHHHHH
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDE-HTYSLLIDAYA--------NAGRWESARIVLKEMEVSHAKPN-------SFIYSR  410 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~--------~~g~~~~A~~l~~~m~~~~~~~~-------~~~~~~  410 (664)
                      ...+.+.+...+......  .+.. .....+...+.        ..|++++|..+++++.+... .+       ..++..
T Consensus       172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~  248 (537)
T 3fp2_A          172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCY  248 (537)
T ss_dssp             HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHH
T ss_pred             HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHH
Confidence            444444444333322221  1111 12222222222        12578899999998886542 22       235666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012          411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR  490 (664)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  490 (664)
                      +...+...|++++|...++.+.+.  .|+...+..+...+...|++++|...++++.+.. +.+..+|..+...|...|+
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence            777888899999999999998876  4558888888999999999999999999988764 3467889999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012          491 YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEG  570 (664)
Q Consensus       491 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  570 (664)
                      +++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+...|...|++++|++.++.
T Consensus       326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  403 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDI  403 (537)
T ss_dssp             HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999998875 44567888899999999999999999999988642 3567888899999999999999988763


Q ss_pred             hHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          571 LSDQAVNAFRVMRTD-GLKPSNLALNSLINAFGED----------QRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRV  639 (664)
Q Consensus       571 ~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~  639 (664)
                      ..+.    .   ... ........+..+..++...          |++++|+..++++.+.. +.+...+..++.++.+.
T Consensus       404 a~~~----~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~  475 (537)
T 3fp2_A          404 AKRL----E---EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM  475 (537)
T ss_dssp             HHHH----H---HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHc----C---CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence            3221    1   121 1112223345556777777          99999999999998842 44678888999999999


Q ss_pred             CCHhHHHHHHHH
Q 006012          640 DKFHKVFSSYLF  651 (664)
Q Consensus       640 g~~~~A~~~~~~  651 (664)
                      |++++|.+.|+.
T Consensus       476 g~~~~A~~~~~~  487 (537)
T 3fp2_A          476 EKIDEAIELFED  487 (537)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            999999998883

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=1.4e-18  Score=188.98  Aligned_cols=397  Identities=12%  Similarity=0.074  Sum_probs=269.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012          192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV  271 (664)
Q Consensus       192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l  271 (664)
                      ++.+|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+...+...|+.+.+  ...|+.+ ..    +....+..
T Consensus        58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A--~~~~~~~-~~----~~~~~~~~  129 (537)
T 3fp2_A           58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDA--MFDLSVL-SL----NGDFDGAS  129 (537)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH--HHHHHHH-C-------------
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHH--HHHHHHH-hc----CCCCChHH
Confidence            34444444444444555555555555444432 22333444444444444444322  2333211 11    11112233


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVG------LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTK-AYNALLKG  344 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~  344 (664)
                      +..+...+...+|...++.+....      ..|+.    ..+..+....+.+.+...+......  .+... ....+...
T Consensus       130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~  203 (537)
T 3fp2_A          130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRL  203 (537)
T ss_dssp             --CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHH
Confidence            556666777889999999986531      22333    3444555666666665554443321  22222 22223222


Q ss_pred             HH--------hcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 006012          345 YV--------KMGYLKDAEFVVSEMERSGVLPD-------EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYS  409 (664)
Q Consensus       345 ~~--------~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~  409 (664)
                      +.        ..|++++|..+++++.+.... +       ..++..+...+...|++++|...+++.....  |+...+.
T Consensus       204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~  280 (537)
T 3fp2_A          204 YSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYI  280 (537)
T ss_dssp             HTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHH
Confidence            22        225789999999999876433 2       2356777788889999999999999998864  5588899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006012          410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG  489 (664)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  489 (664)
                      .+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+...|.+.|
T Consensus       281 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g  358 (537)
T 3fp2_A          281 FLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQG  358 (537)
T ss_dssp             HHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999988764 4578899999999999999999999999999765 345678999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc------
Q 006012          490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-----LPNVVTYTTLVDIYGQS------  558 (664)
Q Consensus       490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~------  558 (664)
                      ++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+...     ......+..+...+...      
T Consensus       359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  437 (537)
T 3fp2_A          359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT  437 (537)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence            9999999999999875 55678899999999999999999999999876421     11223345556677777      


Q ss_pred             ----CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          559 ----GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       559 ----g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                          |++++|+..++           +..... ..+...|..+..+|.+.|++++|.+.++++.+.
T Consensus       438 ~~~~~~~~~A~~~~~-----------~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          438 QLDEEKFNAAIKLLT-----------KACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             -CCHHHHHHHHHHHH-----------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHhHHHHHHHHHH-----------HHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                88888877754           333321 235678999999999999999999999999983

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.84  E-value=2.8e-17  Score=168.25  Aligned_cols=332  Identities=13%  Similarity=0.052  Sum_probs=229.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      |+..+..+...+...|++++|++.|+.+.+.. +.+..++..+...+...|++++|...|+++.+... .+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence            35567777788888888888888888877653 44577788888888888888888888888777532 25677777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVL--PDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW  421 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~  421 (664)
                      .+...|++++|...++++.+....  .+...+..+...+.                       ...+..+...+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence            888888888888888887765320  12333333321110                       01122334566677777


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       422 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      ++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++.
T Consensus       137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777777766543 4456677777777777777777777777777654 345677777777777788888888888777


Q ss_pred             HHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 006012          502 QERGYFPCTTTYN------------IMINLLGEQERWEDVKRLLGNMRAQGLLPNV----VTYTTLVDIYGQSGRFDDAI  565 (664)
Q Consensus       502 ~~~~~~p~~~t~~------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~  565 (664)
                      .+.. +.+...+.            .+...+.+.|++++|...++++.+.... +.    ..+..+..+|.+.|++++|+
T Consensus       215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence            7654 33333333            2356688899999999999998885432 23    33556788899999999998


Q ss_pred             HHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006012          566 ECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD-VVTYTTLMKALIRV  639 (664)
Q Consensus       566 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~  639 (664)
                      +.++..           ...  .| +..+|..+..+|...|++++|.+.++++.+  +.|+ ...+..+..+....
T Consensus       293 ~~~~~~-----------~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          293 RICSEV-----------LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHH-----------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----------HHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHH
Confidence            886532           221  34 577899999999999999999999999998  4554 56666666665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.84  E-value=3.5e-17  Score=167.52  Aligned_cols=321  Identities=12%  Similarity=0.038  Sum_probs=217.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012          192 TPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDV  271 (664)
Q Consensus       192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~l  271 (664)
                      ++..|..+...+.+.|++++|+..|+++.+..  |+                                    +...+..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~------------------------------------~~~~~~~~   43 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PD------------------------------------NYIAYYRR   43 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------------------------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc------------------------------------cHHHHHHH
Confidence            45678889999999999999999999988753  22                                    22344445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHH--------
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PRTKAYNAL--------  341 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~l--------  341 (664)
                      ...|...|++++|++.|+++.+.. +.+...|..+...+.+.|++++|...|+++.+....  .+...+..+        
T Consensus        44 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  122 (359)
T 3ieg_A           44 ATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR  122 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH
Confidence            555556666666666666665542 234556666666666666666666666666553210  122333333        


Q ss_pred             ----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012          342 ----LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD  417 (664)
Q Consensus       342 ----i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~  417 (664)
                          ...+...|++++|.+.++++.+... .+...+..+...|...|++++|...+++..... +.+..++..+...+..
T Consensus       123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  200 (359)
T 3ieg_A          123 LRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ  200 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence                4666777777777777777766543 256677777777777777777777777776653 4466677777777777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHH
Q 006012          418 RGEWQRTFQVLKEMKSSGVEPDTHFYN------------VMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT----ITWNTL  481 (664)
Q Consensus       418 ~g~~~~a~~~~~~m~~~g~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l  481 (664)
                      .|++++|...++...+.. +.+...+.            .+...+.+.|++++|...++++.+.... +.    ..+..+
T Consensus       201 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l  278 (359)
T 3ieg_A          201 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI  278 (359)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence            777777777777776543 22333322            2355678888999999999888875422 22    234557


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          482 IDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ  557 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  557 (664)
                      ..+|.+.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+..+...
T Consensus       279 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          279 CHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence            778888999999999999988875 557888888999999999999999999999876422 45556555555443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=5.5e-17  Score=164.15  Aligned_cols=294  Identities=11%  Similarity=-0.031  Sum_probs=247.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      +.+...+..+...+...|++++|+++|+.+.+.. +.+...+..++..+.+.|++++|..+++++.+... .+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence            4556677788888999999999999999998764 44566777888999999999999999999988643 367888899


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 006012          342 LKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE  420 (664)
Q Consensus       342 i~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~  420 (664)
                      ...+...| ++++|.+.++++.+.... +...|..+...|...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            99999999 999999999999987543 67889999999999999999999999998765 3355677779999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 006012          421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--------IEPDTITWNTLIDCHFKCGRYD  492 (664)
Q Consensus       421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~  492 (664)
                      +++|...++++.+.. +.+..++..+...+...|++++|...+++..+..        .+.....+..+...|.+.|+++
T Consensus       175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            999999999998765 5578899999999999999999999999988631        1334678999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChH
Q 006012          493 RAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY-GQSGRFD  562 (664)
Q Consensus       493 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~  562 (664)
                      +|...+++..+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+..++ ...|+.+
T Consensus       254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence            9999999998875 55778899999999999999999999999987642 2677888888887 4555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=1.6e-14  Score=154.92  Aligned_cols=366  Identities=12%  Similarity=0.045  Sum_probs=255.3

Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHH
Q 006012          192 TPLTYNALISACAR----NDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQL  267 (664)
Q Consensus       192 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~  267 (664)
                      ++.++..|...|..    .+++++|+..|++..+.|   +.                                     ..
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~-------------------------------------~a   77 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YT-------------------------------------PA   77 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------------------------HH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CH-------------------------------------HH
Confidence            55566666666666    778888888887776643   11                                     22


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006012          268 LNDVIVGFAK----AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPRTKAYN  339 (664)
Q Consensus       268 ~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~  339 (664)
                      +..|...|..    .+++++|.+.|++..+.|   +...+..+...|..    .+++++|.+.|++..+.|   +...+.
T Consensus        78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  151 (490)
T 2xm6_A           78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQ  151 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            2333444444    567777777777777654   55666667777776    677778888777777654   456666


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012          340 ALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRI  411 (664)
Q Consensus       340 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~l  411 (664)
                      .|...|..    .++.++|.+.|++..+.|   +...+..+...|..    .++.++|.+.|++..+.+   +...+..+
T Consensus       152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l  225 (490)
T 2xm6_A          152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL  225 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            67777766    667888888888777764   66777777777777    778888888888777653   55666667


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          412 LAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLID  483 (664)
Q Consensus       412 l~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  483 (664)
                      ...|..    .+++++|...|++..+.|   +...+..+...|..    .++.++|...|++..+.|   +...+..+..
T Consensus       226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~  299 (490)
T 2xm6_A          226 ADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH  299 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence            777765    678888888888877654   45566666666666    788888888888887654   4566677777


Q ss_pred             HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          484 CHFKC-----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE---RWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY  555 (664)
Q Consensus       484 ~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  555 (664)
                      .|...     +++++|+..|++..+.+   +...+..+...|...|   +.++|.+.+++..+.|   +...+..|...|
T Consensus       300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y  373 (490)
T 2xm6_A          300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL  373 (490)
T ss_dssp             HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            77776     78888888888888875   4566777777776655   6788888888888763   677788888888


Q ss_pred             Hh----cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-C-C
Q 006012          556 GQ----SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGLK-P-D  625 (664)
Q Consensus       556 ~~----~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p-~  625 (664)
                      ..    .+++++|++.+           ++..+.|   +...+..|...|..    .+++++|..+|++..+.|.. | +
T Consensus       374 ~~g~g~~~~~~~A~~~~-----------~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  439 (490)
T 2xm6_A          374 LQGKGVKKDEQQAAIWM-----------RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT  439 (490)
T ss_dssp             HHTSSSCCCHHHHHHHH-----------HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred             HcCCCCCCCHHHHHHHH-----------HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence            87    77777777664           3444433   46677778888877    78889999998888886532 2 3


Q ss_pred             HHHHHHHHHH
Q 006012          626 VVTYTTLMKA  635 (664)
Q Consensus       626 ~~~~~~l~~a  635 (664)
                      ......+...
T Consensus       440 ~~a~~~l~~~  449 (490)
T 2xm6_A          440 ENRNITEKKL  449 (490)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHhc
Confidence            3344444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=2.2e-14  Score=153.93  Aligned_cols=349  Identities=15%  Similarity=0.092  Sum_probs=296.7

Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCC
Q 006012          263 LDGQLLNDVIVGFAK----AGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPR  334 (664)
Q Consensus       263 ~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~  334 (664)
                      -+...+..+...|..    .+++++|++.|++..+.|   +...+..+...|..    .+++++|.+.|++..+.|   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            366777778888888    899999999999998864   67888899999998    999999999999998865   6


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHH
Q 006012          335 TKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSF  406 (664)
Q Consensus       335 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~  406 (664)
                      ...+..|...|..    .+++++|.+.|++..+.|   +...+..|...|..    .++.++|.+.|++..+.+   +..
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~  184 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW  184 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            6778888888988    789999999999998875   67888889999988    889999999999998864   678


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          407 IYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITW  478 (664)
Q Consensus       407 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~  478 (664)
                      .+..+...|..    .++.++|.+.|++..+.|   +...+..+...|..    .++.++|...|++..+.|   +...+
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            88889888888    899999999999998865   56778888888875    889999999999998764   56677


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          479 NTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ-----ERWEDVKRLLGNMRAQGLLPNVVTYT  549 (664)
Q Consensus       479 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~  549 (664)
                      ..+...|..    .+++++|++.|++..+.|   +...+..+...|...     ++.++|...+++..+.|   +...+.
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~  332 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA  332 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence            778888888    899999999999998876   566778888888877     89999999999999875   567788


Q ss_pred             HHHHHHHhcC---ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006012          550 TLVDIYGQSG---RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE----DQRDAEAFAVLQYMKENGL  622 (664)
Q Consensus       550 ~li~~~~~~g---~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  622 (664)
                      .+...|...|   ++++|++           .|++..+.   .+...+..|...|..    .+++++|+.++++..+.| 
T Consensus       333 ~lg~~y~~~g~~~~~~~A~~-----------~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-  397 (490)
T 2xm6_A          333 NLGAIYFRLGSEEEHKKAVE-----------WFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-  397 (490)
T ss_dssp             HHHHHHHHSCCHHHHHHHHH-----------HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhCCCcccHHHHHH-----------HHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence            8888888766   4444444           46666654   367788899999988    899999999999999865 


Q ss_pred             CCCHHHHHHHHHHHHh----cCCHhHHHHHHHHH
Q 006012          623 KPDVVTYTTLMKALIR----VDKFHKVFSSYLFF  652 (664)
Q Consensus       623 ~p~~~~~~~l~~a~~~----~g~~~~A~~~~~~~  652 (664)
                        +...+..|...|.+    .+++++|...|+.-
T Consensus       398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence              57888899999998    89999999999844

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.79  E-value=1.4e-16  Score=161.23  Aligned_cols=290  Identities=8%  Similarity=-0.040  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006012          335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG  414 (664)
Q Consensus       335 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~  414 (664)
                      ...+..+...+...|++++|.++++++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   99 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY   99 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence            334455555556666666666666666554322 33444455555666666666666666665543 2345556666666


Q ss_pred             HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          415 YRDRG-EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR  493 (664)
Q Consensus       415 ~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  493 (664)
                      +...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence            66666 6666776666666543 3345667777777777777777777777777654 2345566667788888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHH
Q 006012          494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG--------LLPNVVTYTTLVDIYGQSGRFDDAI  565 (664)
Q Consensus       494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~  565 (664)
                      |.+.++++.+.. +.+...+..+...+...|++++|...++++.+..        ...+..++..+..+|.+.|++++|+
T Consensus       178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            888888887765 5567788888888888888888888888887631        1334678999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCCHh
Q 006012          566 ECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKAL-IRVDKFH  643 (664)
Q Consensus       566 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~-~~~g~~~  643 (664)
                      +.++..           .+.. ..+...|..+..+|.+.|++++|.+.++++.+  +.| +...+..+..++ ...|+.+
T Consensus       257 ~~~~~a-----------~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          257 DYHRQA-----------LVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHH-----------HHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHH-----------HhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence            886532           2211 22567899999999999999999999999987  445 678888888888 4556543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.77  E-value=8e-17  Score=165.90  Aligned_cols=291  Identities=11%  Similarity=-0.031  Sum_probs=215.2

Q ss_pred             HHHcCCHHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          275 FAKAGDASKAMR-FLGMAQGVGL-SP--KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       275 ~~~~g~~~~A~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      +...|++++|++ .|++...... .|  +...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence            334467777777 7765544321 11  245577777888888888888888888877543 366777788888888888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHHH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR---------------ILAGY  415 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~---------------ll~~~  415 (664)
                      +++|...++++.+... .+..++..+...|...|++++|...++++...... +...+..               .+..+
T Consensus       114 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            8888888888776543 26777888888888888888888888887765422 1111111               23344


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012          416 RDRGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA  494 (664)
Q Consensus       416 ~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  494 (664)
                      ...|++++|...++++.+.... ++..++..+...+.+.|++++|...++++.+.. +.+...|..+...|.+.|++++|
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence            4889999999999998876422 158889999999999999999999999988764 34678899999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHH
Q 006012          495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP----------NVVTYTTLVDIYGQSGRFDDA  564 (664)
Q Consensus       495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A  564 (664)
                      ...|+++.+.. +.+...+..+...+.+.|++++|...++++.+.....          ...+|..+..+|.+.|++++|
T Consensus       271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999998875 5678899999999999999999999999988753221          268999999999999999999


Q ss_pred             HHHHhh
Q 006012          565 IECLEG  570 (664)
Q Consensus       565 ~~~~~~  570 (664)
                      ..++..
T Consensus       350 ~~~~~~  355 (368)
T 1fch_A          350 GAADAR  355 (368)
T ss_dssp             HHHHTT
T ss_pred             HHhHHH
Confidence            988763

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.77  E-value=2.6e-14  Score=155.01  Aligned_cols=410  Identities=11%  Similarity=0.045  Sum_probs=293.9

Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 006012          150 VSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYH  225 (664)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  225 (664)
                      ++..++.+  |.+..+|..++. +.+.|++++|..+    ....|.+...|..++..+.+.|++++|..+|+++...  .
T Consensus         2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~   76 (530)
T 2ooe_A            2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V   76 (530)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred             hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence            34445554  566777888887 4677888888776    4556778888999999999999999999999999876  3


Q ss_pred             CChhhHHHHHHHH-HhcCCCChHH--HHHHHHHHHh-CCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 006012          226 CDFINYSLVIQSL-TRTNKIDSSL--LQKLYKEIEC-DKIE-LDGQLLNDVIVGFAK---------AGDASKAMRFLGMA  291 (664)
Q Consensus       226 p~~~~~~~ll~~~-~~~g~~~~~~--~~~l~~~~~~-~~~~-~d~~~~~~li~~~~~---------~g~~~~A~~~~~~~  291 (664)
                      |+...|...+... ...|+.+.+.  +.++|+.... .|.. .+...|...+....+         .|++++|..+|++.
T Consensus        77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a  156 (530)
T 2ooe_A           77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG  156 (530)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence            6766666666433 3456665432  3456776654 2433 356788888776655         78999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHH
Q 006012          292 QGVGLSPKTATYAAVITAL-------------SNSGRTIEAEAVFEELK------ESG---LKPR--------TKAYNAL  341 (664)
Q Consensus       292 ~~~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~~---~~p~--------~~~~~~l  341 (664)
                      .+.........|.......             .+.+++..|..++.++.      +..   ++|+        ...|...
T Consensus       157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~  236 (530)
T 2ooe_A          157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY  236 (530)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred             HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence            8731111123444332211             13456777887777632      221   2443        2456655


Q ss_pred             HHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhc
Q 006012          342 LKGYVKM----GYL----KDAEFVVSEMERSGVLPDEHTYSLLIDAYAN-------AGRWE-------SARIVLKEMEVS  399 (664)
Q Consensus       342 i~~~~~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~  399 (664)
                      +......    ++.    +.+..+|++...... .+...|..++..+.+       .|+++       +|..+|++..+.
T Consensus       237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~  315 (530)
T 2ooe_A          237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST  315 (530)
T ss_dssp             HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence            5443332    232    477788998887533 368889888888876       69987       899999999863


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          400 HAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD--THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT  477 (664)
Q Consensus       400 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  477 (664)
                      -.+.+...|..++..+.+.|++++|..+|+.+.+.  .|+  ...|...+..+.+.|++++|..+|++..+... .+...
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~  392 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV  392 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHH
Confidence            33557889999999999999999999999999986  443  35888899999999999999999999987532 22333


Q ss_pred             HHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHH
Q 006012          478 WNTLID-CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LP--NVVTYTTLVD  553 (664)
Q Consensus       478 ~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p--~~~~~~~li~  553 (664)
                      |..... .+...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|  ....|...+.
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~  471 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA  471 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            332222 2346899999999999998875 45688999999999999999999999999998742 22  2558888899


Q ss_pred             HHHhcCChHHHHHHHh
Q 006012          554 IYGQSGRFDDAIECLE  569 (664)
Q Consensus       554 ~~~~~g~~~~A~~~~~  569 (664)
                      ...+.|+.+.+..+..
T Consensus       472 ~e~~~G~~~~~~~~~~  487 (530)
T 2ooe_A          472 FESNIGDLASILKVEK  487 (530)
T ss_dssp             HHHHSSCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            8899999999887754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=4.2e-14  Score=153.32  Aligned_cols=418  Identities=12%  Similarity=0.122  Sum_probs=234.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHH
Q 006012          189 QRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLL  268 (664)
Q Consensus       189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~  268 (664)
                      .+.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+.+.  +..+|+......  |+...|
T Consensus         9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~--a~~~~~ral~~~--p~~~lw   82 (530)
T 2ooe_A            9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDK--VEKLFQRCLMKV--LHIDLW   82 (530)
T ss_dssp             CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHTTTC--CCHHHH
T ss_pred             CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhcC--CChHHH
Confidence            4567889999988 478899999999999988752 3344456566655555555532  345555555442  345555


Q ss_pred             HHHHHHH-HHcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCC
Q 006012          269 NDVIVGF-AKAGDASKAMR----FLGMAQG-VGLSP-KTATYAAVITALSN---------SGRTIEAEAVFEELKESGLK  332 (664)
Q Consensus       269 ~~li~~~-~~~g~~~~A~~----~~~~~~~-~g~~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~  332 (664)
                      ...+... ...|+.++|.+    +|+.... .|..| +...|...+....+         .|+++.|..+|++.++....
T Consensus        83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~  162 (530)
T 2ooe_A           83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI  162 (530)
T ss_dssp             HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred             HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence            5544322 23344444433    4444432 23222 34445555544433         45555555555555542111


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hcC---CCC
Q 006012          333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME------VSH---AKP  403 (664)
Q Consensus       333 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~~---~~~  403 (664)
                      .....|..........|. ..+                   ..++.  .+.++++.|..+++++.      +..   ++|
T Consensus       163 ~~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          163 NIEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             THHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             hHHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence            011222221111100000 000                   00000  01234555555555421      111   233


Q ss_pred             C--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCHH---
Q 006012          404 N--------SFIYSRILAGYRDR----GEW----QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-------YNCLH---  457 (664)
Q Consensus       404 ~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~---  457 (664)
                      +        ...|...+......    ++.    .++..+|++..... +.+...|..+...+.+       .|+++   
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~  299 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK  299 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence            3        23444444332221    122    35666777766542 4456777777776664       57765   


Q ss_pred             ----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 006012          458 ----HAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT-TTYNIMINLLGEQERWEDVKRL  532 (664)
Q Consensus       458 ----~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~  532 (664)
                          +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|.++
T Consensus       300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~  378 (530)
T 2ooe_A          300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMI  378 (530)
T ss_dssp             HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence                778888887752223457778888888888888888888888887753 2232 4677777777778888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006012          533 LGNMRAQGLLPNVVTYTTLVDI-YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEA  610 (664)
Q Consensus       533 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A  610 (664)
                      |++..+... .+...|...+.. +...|++++|..+|+..++           .  .| +...|..++..+.+.|+.++|
T Consensus       379 ~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~-----------~--~p~~~~~~~~~~~~~~~~g~~~~A  444 (530)
T 2ooe_A          379 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-----------K--YGDIPEYVLAYIDYLSHLNEDNNT  444 (530)
T ss_dssp             HHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----------H--HTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred             HHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----------H--CCCCHHHHHHHHHHHHhCCCHhhH
Confidence            888876522 123333332222 3357777777777552221           1  13 456778888888888888888


Q ss_pred             HHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          611 FAVLQYMKENG-LKPD--VVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       611 ~~~~~~m~~~g-~~p~--~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      ..+|++.++.+ ..|+  ...|...+....+.|+.+.+..+++
T Consensus       445 r~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~  487 (530)
T 2ooe_A          445 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  487 (530)
T ss_dssp             HHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888887742 2332  4477777777777788888877776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=8.4e-13  Score=148.90  Aligned_cols=446  Identities=12%  Similarity=0.148  Sum_probs=249.8

Q ss_pred             CChhhHHHHHHHHhcCCCChHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHcccCCHHHHHHhhC----CCC---CCHHH
Q 006012          124 VPAPLWHSLLKNLCSSNSSIDLAYAVVSWLQKHNLC-YSYELLYSILIHALGRSEKLYEAFLLSQ----RQR---LTPLT  195 (664)
Q Consensus       124 ~~~~~~~~~l~~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~----~~~---~~~~~  195 (664)
                      ....+|..+|..      +-..-..+.+|.....+. ..++.--...+..|...|.+.+|+.+.+    .+.   .+...
T Consensus       951 ~d~~lW~~vl~~------~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A          951 KDPELWGSVLLE------SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred             cCHHHHHHHhcC------CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence            344556555521      112334455554443321 1123344555666666666666665511    111   23345


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006012          196 YNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGF  275 (664)
Q Consensus       196 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~  275 (664)
                      .+.|+....+. +..+..+..++.....       ..-+...+...|.+++|  ..+|++..     ......+.++.  
T Consensus      1025 qnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEA--f~IYkKa~-----~~~~A~~VLie-- 1087 (1630)
T 1xi4_A         1025 QNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEA--FAIFRKFD-----VNTSAVQVLIE-- 1087 (1630)
T ss_pred             HHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHH--HHHHHHcC-----CHHHHHHHHHH--
Confidence            55555555555 4455555555443211       22244455555655443  35555531     11111222222  


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE  355 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  355 (664)
                       ..|++++|.++.++.      -+..+|..+..++.+.|++++|.+.|.+.      -|...|..++.++.+.|++++|.
T Consensus      1088 -~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A         1088 -HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred             -HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence             556666666666643      23556667777777777777777776443      25566666777777777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG  435 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  435 (664)
                      +.+....+..  ++....+.++.+|++.+++++.....    .   .++...|..+...|...|++++|..+|...    
T Consensus      1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A         1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred             HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence            7776655543  23223334666677766666433222    1   345555666666777777777777777663    


Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012          436 VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNI  515 (664)
Q Consensus       436 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~  515 (664)
                           ..|..+...|.+.|++++|.+.+++.      .+..+|..+-.+|...|++..|......+     ..+...+..
T Consensus      1222 -----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLee 1285 (1630)
T 1xi4_A         1222 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 1285 (1630)
T ss_pred             -----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHH
Confidence                 35666777777777777777776655      24566666666676777766666655432     223455566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHhhhHHHHHHHHHHHHHCCCCC----
Q 006012          516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS--GRFDDAIECLEGLSDQAVNAFRVMRTDGLKP----  589 (664)
Q Consensus       516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p----  589 (664)
                      ++..|.+.|.+++|..+++.....+ .-....|+-+...|++.  ++..++.+.           |..-.  .+.|    
T Consensus      1286 li~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~-----------f~~ri--ni~k~~r~ 1351 (1630)
T 1xi4_A         1286 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLEL-----------FWSRV--NIPKVLRA 1351 (1630)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHH-----------HHHhc--ccchHhHH
Confidence            6777777777777777776665443 22344555555555543  222233332           22111  1222    


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 006012          590 --SNLALNSLINAFGEDQRDAEAFAV-------------LQYMKENGLKPDVVTYTTLMKALIRVD--------------  640 (664)
Q Consensus       590 --~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~~~~~l~~a~~~~g--------------  640 (664)
                        +...|..++-.|.+.|+++.|...             |...+.  -..|...|...+.-|...+              
T Consensus      1352 ~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r 1429 (1630)
T 1xi4_A         1352 AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR 1429 (1630)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc
Confidence              346799999999999999999842             222111  3457888888888888777              


Q ss_pred             -CHhHHHHHHH
Q 006012          641 -KFHKVFSSYL  650 (664)
Q Consensus       641 -~~~~A~~~~~  650 (664)
                       +.+++.++++
T Consensus      1430 lD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1430 LDHTRAVNYFS 1440 (1630)
T ss_pred             CChHHHHHHHH
Confidence             7788887777

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=1.5e-16  Score=163.74  Aligned_cols=272  Identities=13%  Similarity=-0.021  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006012          337 AYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR  416 (664)
Q Consensus       337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~  416 (664)
                      .+..+...+.+.|++++|...|+++.+.... +..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT  144 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3555555566666666666666665554322 45556666666666666666666666665543 334555666666666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 006012          417 DRGEWQRTFQVLKEMKSSGVE---------PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHF  486 (664)
Q Consensus       417 ~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~  486 (664)
                      ..|++++|...++++.+....         .....+..+...+.+.|++++|...++++.+.... .+..++..+...|.
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            666666666666665543100         11233455677888999999999999999876422 16888999999999


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012          487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE  566 (664)
Q Consensus       487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  566 (664)
                      +.|++++|++.|+++.+.. +.+..+|..+..+|...|++++|.+.++++.+... .+..++..+..+|.+.|++++|+.
T Consensus       225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999998875 56788999999999999999999999999988642 258889999999999999999998


Q ss_pred             HHhhhHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012          567 CLEGLSDQAVNAFRVMRTD----GLKPSNLALNSLINAFGEDQRDAEAFAVLQY  616 (664)
Q Consensus       567 ~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  616 (664)
                      .++...+    +.......    ....+...|..+..++...|+.+.+..+.++
T Consensus       303 ~~~~al~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          303 NFLTALS----LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHH----HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHH----hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            8763332    11110000    0011346788888889899998888876654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.73  E-value=8.4e-16  Score=158.18  Aligned_cols=267  Identities=12%  Similarity=0.039  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      ...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+... .+..++..+...
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~  141 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVS  141 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            4456677788888899999999999888764 45678888889999999999999999998887643 377888888999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHH
Q 006012          345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSL---------------LIDAYANAGRWESARIVLKEMEVSHAKP-NSFIY  408 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~~  408 (664)
                      +...|++++|.+.++++.+.... +...+..               .+..+...|++++|...++++....... +..++
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  220 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  220 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence            99999999999999998876433 2222211               2333448899999999999998765322 58889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC  488 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  488 (664)
                      ..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence            999999999999999999999988764 4567899999999999999999999999998764 45678899999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          489 GRYDRAEELFEEMQERGYF----------PCTTTYNIMINLLGEQERWEDVKRLLGNM  536 (664)
Q Consensus       489 g~~~~A~~~~~~m~~~~~~----------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m  536 (664)
                      |++++|...|+++.+....          ....+|..+..++...|+.++|..++.+.
T Consensus       299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            9999999999998765311          12688999999999999999999887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.73  E-value=1.5e-12  Score=146.99  Aligned_cols=425  Identities=12%  Similarity=0.115  Sum_probs=304.5

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHccc--CCHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006012          130 HSLLKNLCSSNSSIDLAYAVVSWLQKHNL-CYSYELLYSILIHALGRS--EKLYEAFLLSQRQRLTPLTYNALISACARN  206 (664)
Q Consensus       130 ~~~l~~l~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~~~li~~~~~~  206 (664)
                      .++..+.....+.+.+|+++++.++-.+- +..+..+.+.|+.+..+.  ++..+......  ..   ...-+...+...
T Consensus       988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd--~~---d~~eIA~Iai~l 1062 (1630)
T 1xi4_A          988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD--NY---DAPDIANIAISN 1062 (1630)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh--hc---cHHHHHHHHHhC
Confidence            34444445578899999999999985542 224556777777666555  33333333221  12   244477888999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          207 DDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMR  286 (664)
Q Consensus       207 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~  286 (664)
                      |.+++|..+|++...     .....+.++.   ..++++++  .++.+++      -+..+|..+..++.+.|++++|++
T Consensus      1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrA--iE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRA--YEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred             CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHH--HHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999999999631     2222333333   34444332  2444332      357889999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          287 FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGV  366 (664)
Q Consensus       287 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  366 (664)
                      .|.+.      .|...|..++..+.+.|++++|.+.|...++..-  +....+.++.+|++.+++++...+.    +   
T Consensus      1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A         1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred             HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence            99764      5788899999999999999999999998877543  3333445999999999988644443    2   


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          367 LPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVM  446 (664)
Q Consensus       367 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  446 (664)
                      .++...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+.+++.      .+..+|..+
T Consensus      1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A         1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence            346677888999999999999999999985         37999999999999999999999985      467899999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC
Q 006012          447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE--QE  524 (664)
Q Consensus       447 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~g  524 (664)
                      ..+|...|++..|......+     ..+...+..++..|.+.|.+++|+.+++..+..+ +-....|.-+...+++  .+
T Consensus      1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence            99999999999999877653     3466778899999999999999999998887665 4455667666666655  44


Q ss_pred             CHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHH--HHHHHHHHCCCCCCHHHHHH
Q 006012          525 RWEDVKRLLGNMRAQGLLP------NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAV--NAFRVMRTDGLKPSNLALNS  596 (664)
Q Consensus       525 ~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~--~~~~~m~~~g~~p~~~~~~~  596 (664)
                      +..++.++|..-..  +.+      +...|..++-.|.+.|+++.|...+-...+.|.  ..|+....+  ..+...|.-
T Consensus      1331 klmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyyk 1406 (1630)
T 1xi4_A         1331 KMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYR 1406 (1630)
T ss_pred             HHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHH
Confidence            55555555553322  222      567899999999999999999966544433322  234443332  335555555


Q ss_pred             HHHHHHhcC---------------CHHHHHHHHH
Q 006012          597 LINAFGEDQ---------------RDAEAFAVLQ  615 (664)
Q Consensus       597 li~~~~~~g---------------~~~~A~~~~~  615 (664)
                      .+.-|...+               +++.+.++|+
T Consensus      1407 ai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1407 AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             HHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            555555444               6666666655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=4.9e-16  Score=159.96  Aligned_cols=264  Identities=11%  Similarity=-0.044  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA  381 (664)
Q Consensus       302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  381 (664)
                      .|..+...+.+.|++++|.+.|+++.+... .+..++..+...+...|++++|...|+++.+... .+..+|..+...|.
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT  144 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence            344455555555555555555555544322 2445555555555555555555555555554322 13455555555555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh
Q 006012          382 NAGRWESARIVLKEMEVSHAK---------PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFG  451 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~  451 (664)
                      ..|++++|...|+++.+....         .....+..+...+...|++++|...++++.+.... .+..++..+...|.
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            555555555555555442200         01223444567778888888888888888775421 16788888888888


Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKR  531 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  531 (664)
                      +.|++++|...+++..+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|..
T Consensus       225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence            8889999998888888754 3467888889999999999999999999988875 4568888889999999999999999


Q ss_pred             HHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          532 LLGNMRAQGLL-----------PNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       532 ~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      .++++.+....           .+..+|..+..++...|+.+.+..+..
T Consensus       303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            99988764211           135788999999999999998887754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.72  E-value=4.7e-16  Score=157.82  Aligned_cols=282  Identities=15%  Similarity=0.188  Sum_probs=120.0

Q ss_pred             ccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHH
Q 006012          175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYK  254 (664)
Q Consensus       175 ~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~  254 (664)
                      +.|++++|....... +++.+|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++++  ..++
T Consensus        15 ~~~~ld~A~~fae~~-~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi--~yl~   85 (449)
T 1b89_A           15 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV--KYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH--HHHH
Confidence            566777777773333 23358888888888888888888888652      46667888888888888776643  5554


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006012          255 EIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR  334 (664)
Q Consensus       255 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~  334 (664)
                      ...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.++..|...|++++|...|..+        
T Consensus        86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred             HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            44442  4456778888888888888888887774       367778888888888889998888888876        


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006012          335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG  414 (664)
Q Consensus       335 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~  414 (664)
                       ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......     +.....-...++..
T Consensus       149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~  216 (449)
T 1b89_A          149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY  216 (449)
T ss_dssp             -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence             35888888888888888888888887      2778888888888888888888554443     22333445567788


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 006012          415 YRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY--NCLHHAMAAFDRMLSEGIEP------DTITWNTLIDCHF  486 (664)
Q Consensus       415 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~------~~~~~~~li~~~~  486 (664)
                      |.+.|++++|..+++...... +-....|+-+.-.|++-  +++.+.++.|..-  .+++|      +...|..+.-.|.
T Consensus       217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888877654 45566677666666654  3344444444311  11111      3445777777888


Q ss_pred             HcCCHHHHHHH
Q 006012          487 KCGRYDRAEEL  497 (664)
Q Consensus       487 ~~g~~~~A~~~  497 (664)
                      +.++++.|...
T Consensus       294 ~~~e~d~A~~t  304 (449)
T 1b89_A          294 KYEEYDNAIIT  304 (449)
T ss_dssp             HTTCHHHHHHH
T ss_pred             hhchHHHHHHH
Confidence            88888877763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.72  E-value=3.3e-15  Score=150.72  Aligned_cols=278  Identities=10%  Similarity=-0.027  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      ...+..+...+...|++++|.++|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+..++..+...
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~   98 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS   98 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence            3445566667777777777777777776643 33566677777777777777777777777766532 255666666677


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHH
Q 006012          345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA--GYRDRGEWQ  422 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~--~~~~~g~~~  422 (664)
                      +...|++++|.+.++++.+.... +...+..+...                      .++......+..  .+...|+++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence            77777777777777776654322 11122111000                      000111111112  266677778


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      +|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.
T Consensus       156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888888777654 3467778888888888888888888888887654 3457788888888888999999999998888


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012          503 ERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-----------NVVTYTTLVDIYGQSGRFDDAIECLEG  570 (664)
Q Consensus       503 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~  570 (664)
                      +.. +.+...+..+...+...|++++|.+.++++.+.....           +..++..+..++.+.|++++|..+++.
T Consensus       234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            765 4567888888888999999999999998887753221           467888899999999999999888763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=181.78  Aligned_cols=153  Identities=16%  Similarity=0.108  Sum_probs=122.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQG---VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAY  338 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~  338 (664)
                      ..-..+||+||++||+.|++++|.++|++|.+   .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            33456899999999999999999999988764   478999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------HHHHHHH
Q 006012          339 NALLKGYVKMGY-LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPN------SFIYSRI  411 (664)
Q Consensus       339 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~------~~~~~~l  411 (664)
                      |+||.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+-    ++..+++ ..+..|+      ..+...|
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv-~P~f~p~~~~~~~~~t~~LL  278 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKV-KPTFSLPPQLPPPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHh-CcccCCCCCCcccccchHHH
Confidence            999999999997 47899999999999999999999999876655433    3333333 2223332      3344455


Q ss_pred             HHHHHhcC
Q 006012          412 LAGYRDRG  419 (664)
Q Consensus       412 l~~~~~~g  419 (664)
                      .+.|.+.+
T Consensus       279 ~dl~s~d~  286 (1134)
T 3spa_A          279 RDVYAKDG  286 (1134)
T ss_dssp             HHHHCCCS
T ss_pred             HHHHccCC
Confidence            56665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.71  E-value=2.1e-17  Score=180.31  Aligned_cols=165  Identities=13%  Similarity=0.193  Sum_probs=135.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          297 SPKTATYAAVITALSNSGRTIEAEAVFEELKE---SGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY  373 (664)
Q Consensus       297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  373 (664)
                      ..-..|||++|++||+.|++++|.++|++|.+   .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            34467999999999999999999999988764   589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 006012          374 SLLIDAYANAGR-WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD------THFYNVM  446 (664)
Q Consensus       374 ~~li~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~l  446 (664)
                      |+||+++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+    +++..+++ ..+..|+      ..+...|
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL  278 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHH
Confidence            999999999998 5789999999999999999999999987665543    33333333 2334443      4555667


Q ss_pred             HHHHhccC---------CHHHHHHHHHHH
Q 006012          447 IDTFGKYN---------CLHHAMAAFDRM  466 (664)
Q Consensus       447 i~~~~~~g---------~~~~A~~~~~~m  466 (664)
                      .+.|.+.+         ..++..+.|++-
T Consensus       279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Q  307 (1134)
T 3spa_A          279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQ  307 (1134)
T ss_dssp             HHHHCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred             HHHHccCCCCcCccccCCHHHHHHHHHHH
Confidence            77777655         245555665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=2.9e-15  Score=151.18  Aligned_cols=280  Identities=13%  Similarity=0.048  Sum_probs=183.4

Q ss_pred             ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006012          227 DFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAV  306 (664)
Q Consensus       227 ~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  306 (664)
                      +...+......+...|++++  +..+++.+.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~--A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   95 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAE--AALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL   95 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHH--HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence            34456677778888998855  458888887754 4578899999999999999999999999998864 4578899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcC
Q 006012          307 ITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID--AYANAG  384 (664)
Q Consensus       307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g  384 (664)
                      ...+...|++++|.+.|+++.+.... +...+..+....                      |+......+..  .+...|
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  152 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPN  152 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcc
Confidence            99999999999999999999876432 222222221000                      01111111211  144455


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 006012          385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFD  464 (664)
Q Consensus       385 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  464 (664)
                      ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus       153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5556666655555443 2345555556666666666666666666655442 3345666666667777777777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          465 RMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP-----------CTTTYNIMINLLGEQERWEDVKRLL  533 (664)
Q Consensus       465 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~g~~~~a~~~~  533 (664)
                      ++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.....           +...|..+..++.+.|++++|..++
T Consensus       231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  309 (327)
T 3cv0_A          231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY  309 (327)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            766543 2356667777777777778888877777776653111           3667777777888888888887777


Q ss_pred             HHH
Q 006012          534 GNM  536 (664)
Q Consensus       534 ~~m  536 (664)
                      ++.
T Consensus       310 ~~~  312 (327)
T 3cv0_A          310 AQN  312 (327)
T ss_dssp             TCC
T ss_pred             HHH
Confidence            644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.70  E-value=1.8e-14  Score=153.81  Aligned_cols=361  Identities=11%  Similarity=0.004  Sum_probs=237.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV--------GLSPKTATYAAVITALSNSGRTIEAEAVFEELKES----  329 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----  329 (664)
                      +.....||.|...+...|++++|++.|++..+.        .-+....+|+.+..+|...|++++|...+++..+.    
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            445678899999999999999999999876541        11234678999999999999999999999887642    


Q ss_pred             -C-CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhcCC
Q 006012          330 -G-LK-PRTKAYNALLKGYVKM--GYLKDAEFVVSEMERSGVLPDEHTYSLLIDA---YANAGRWESARIVLKEMEVSHA  401 (664)
Q Consensus       330 -~-~~-p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~  401 (664)
                       + .. ....+++.+..++.+.  +++++|...|++..+..+. +...+..+...   +...++.++|++.+++..+.. 
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-  205 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-  205 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence             1 11 1345666666666554  4689999999998876433 45555555544   345677788888888887654 


Q ss_pred             CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          402 KPNSFIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTIT  477 (664)
Q Consensus       402 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  477 (664)
                      +.+...+..+...+..    .+++++|.+.+++..... +.+..++..+...|.+.|++++|...+++..+.. +.+..+
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  283 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL  283 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence            3455666665555444    457788999998877654 5567888889999999999999999999988764 345666


Q ss_pred             HHHHHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          478 WNTLIDCHFKC-------------------GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       478 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      +..+..+|...                   +.+++|...+++..+.+ +.+...+..+...+...|++++|.+.|++..+
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~  362 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS  362 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence            77666665432                   33567888888887765 44566788889999999999999999999988


Q ss_pred             CCCCCCH--HHHHHHHH-HHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          539 QGLLPNV--VTYTTLVD-IYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQ  615 (664)
Q Consensus       539 ~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  615 (664)
                      ....+..  ..+..+.. .+...|++++|+..++           +...  +.|+......         ..+.+.++++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~-----------kal~--i~~~~~~~~~---------~~~~l~~~~~  420 (472)
T 4g1t_A          363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI-----------EGVK--INQKSREKEK---------MKDKLQKIAK  420 (472)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH-----------HHHH--SCCCCHHHHH---------HHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----------HHHh--cCcccHHHHH---------HHHHHHHHHH
Confidence            6433222  12333332 2346788888877654           3332  3344332221         1233444555


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          616 YMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       616 ~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      +.++.. +.+..+|..|+.+|...|++++|++.|+
T Consensus       421 ~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~  454 (472)
T 4g1t_A          421 MRLSKN-GADSEALHVLAFLQELNEKMQQADEDSE  454 (472)
T ss_dssp             HHHHHC-C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555432 3456677777777777777777777776

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.70  E-value=1.2e-16  Score=162.09  Aligned_cols=291  Identities=12%  Similarity=0.140  Sum_probs=130.7

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF  356 (664)
Q Consensus       277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  356 (664)
                      +.|++++|.++++++.      +..+|..++.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|..
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            5678899999988873      2348889999999999999999999653      467788889999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV  436 (664)
Q Consensus       357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~  436 (664)
                      .++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|...|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            77776664  4467788889999999999999887774       367779999999999999999999999876     


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          437 EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIM  516 (664)
Q Consensus       437 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l  516 (664)
                          ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|+..|+++.|......+     ...+.-...+
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL  213 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence                36888999999999999999999888      37889999999999999999996655542     2334445578


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          517 INLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS--GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLAL  594 (664)
Q Consensus       517 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  594 (664)
                      +..|.+.|++++|..+++...... .-...+|+-|.-+|++-  +++.+.++.|.+.+.     ..++.+.  --+...|
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in-----i~k~~~~--~~~~~~w  285 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-----IPKVLRA--AEQAHLW  285 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC-----HHHHHHH--HHTTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-----CcHHHHH--HHHHHHH
Confidence            888999999999999999888654 34577777777777764  344444444432111     0011100  0133468


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          595 NSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       595 ~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ..++..|.+.++++.|...   |.+
T Consensus       286 ~e~~~ly~~~~e~d~A~~t---m~~  307 (449)
T 1b89_A          286 AELVFLYDKYEEYDNAIIT---MMN  307 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHH---HHH
T ss_pred             HHHHHHHHhhchHHHHHHH---HHh
Confidence            8899999999999988873   555

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=7.8e-15  Score=145.44  Aligned_cols=273  Identities=12%  Similarity=0.083  Sum_probs=212.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPK--TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      +-....|++..|+..++.....  .|+  ......+.++|...|++++|+..++.    .-+|+..++..+...+...++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence            3455679999999988876543  343  34556778999999999999986654    235577888889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          351 LKDAEFVVSEMERSGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLK  429 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  429 (664)
                      .++|.+.++++...+..| +...+..+...|...|++++|++.+++      +.+...+..++..+.+.|++++|.+.++
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999998876545 466677777899999999999999987      5678889999999999999999999999


Q ss_pred             HHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012          430 EMKSSGVEPDTHFY---NVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY  506 (664)
Q Consensus       430 ~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  506 (664)
                      .+.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..+.. 
T Consensus       155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-  230 (291)
T 3mkr_A          155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-  230 (291)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            998764  443211   223344556689999999999999764 5688899999999999999999999999998876 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012          507 FPCTTTYNIMINLLGEQERWED-VKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE  566 (664)
Q Consensus       507 ~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  566 (664)
                      +-+..++..++..+...|+.++ +.++++++.+.+  |+...   +.+...+.+.++++..
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL  286 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence            6678899999999999999875 678999988753  44322   2344555555555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.66  E-value=3e-14  Score=141.23  Aligned_cols=275  Identities=13%  Similarity=0.120  Sum_probs=178.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQR  423 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~  423 (664)
                      -....|++..|+..++................+..+|...|++++|+..++.    .-+|+..++..+...+...++.++
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence            3445677777777666654332111123445566777777777777765543    124556666777777777777777


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          424 TFQVLKEMKSSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       424 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      |++.++++...+..| +...+..+...+.+.|++++|++.+++      +.+...+..++..|.+.|++++|.+.|+++.
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            777777776655333 455566666777777888888777766      3566777777888888888888888888887


Q ss_pred             HCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHH
Q 006012          503 ERGYFPCTTTY---NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAF  579 (664)
Q Consensus       503 ~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~  579 (664)
                      +..  |+....   ...+..+...|++++|..+++++.+.. +.+...++.+..++.+.|++++|...++.         
T Consensus       158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~---------  225 (291)
T 3mkr_A          158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQE---------  225 (291)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---------
T ss_pred             hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH---------
Confidence            764  332211   122333445578888888888888763 34777888888888888888888777542         


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 006012          580 RVMRTDGLKP-SNLALNSLINAFGEDQRDAE-AFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSY  649 (664)
Q Consensus       580 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~  649 (664)
                        ....  .| +..++..++..+...|+.++ +.++++++++  +.|+...   +.+...+.+.|+++..-|
T Consensus       226 --al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          226 --ALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             --HHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred             --HHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHHc
Confidence              2221  24 45678888888888888765 5678888887  4555332   334556666777766544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=3e-13  Score=144.29  Aligned_cols=361  Identities=11%  Similarity=-0.003  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHHcccCCHHHHHHh-------------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 006012          163 ELLYSILIHALGRSEKLYEAFLL-------------SQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFI  229 (664)
Q Consensus       163 ~~~~~~li~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  229 (664)
                      ..+||.|...|...|++++|+..             ....+....+|+.+..+|...|++++|+..+++..+..      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence            45678888888888888887654             11234456788888888888888888888887765421      


Q ss_pred             hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006012          230 NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA--GDASKAMRFLGMAQGVGLSPKTATYAAVI  307 (664)
Q Consensus       230 ~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~li  307 (664)
                                              .......-.....+++.+..++...  +++++|++.|++..+.. +.+...+..+.
T Consensus       125 ------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~  179 (472)
T 4g1t_A          125 ------------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLA  179 (472)
T ss_dssp             ------------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             ------------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence                                    0000000011233444444444443  46778888888777653 23445555444


Q ss_pred             HH---HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          308 TA---LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY  380 (664)
Q Consensus       308 ~~---~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  380 (664)
                      .+   +...++.++|++.|++..+... .+...+..+...+..    .++.++|.+.+++....... +..++..+...|
T Consensus       180 ~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~  257 (472)
T 4g1t_A          180 IASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFY  257 (472)
T ss_dssp             HHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHH
Confidence            44   3345667777887777776532 245555555544444    34667788888777765432 567777788888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHH
Q 006012          381 ANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR-------------------GEWQRTFQVLKEMKSSGVEPDTH  441 (664)
Q Consensus       381 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~~g~~~~~~  441 (664)
                      ...|++++|...+++..+.. +.+..++..+..+|...                   +.++.|...++...+.. +.+..
T Consensus       258 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~  335 (472)
T 4g1t_A          258 RRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFR  335 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCC
T ss_pred             HHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhh
Confidence            88888888888888877654 33555565555554321                   23566777777776643 34456


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI--TWNTLID-CHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN  518 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  518 (664)
                      ++..+...|...|++++|+..|++.++....+...  .+..+.. .+.+.|++++|+..|++..+..  |+.....    
T Consensus       336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~----  409 (472)
T 4g1t_A          336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE----  409 (472)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH----
T ss_pred             hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH----
Confidence            67788889999999999999999988764322211  2222222 2346789999999999988764  4432222    


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012          519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEG  570 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  570 (664)
                           +....+.+++.+.+..+ +.+..+|..+..+|...|++++|++.++.
T Consensus       410 -----~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~k  455 (472)
T 4g1t_A          410 -----KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSER  455 (472)
T ss_dssp             -----HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------
T ss_pred             -----HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                 22334555666666554 33678899999999999999999988653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.4e-13  Score=130.69  Aligned_cols=224  Identities=12%  Similarity=0.041  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK--PR----TKAYN  339 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~----~~~~~  339 (664)
                      ..+..+...+...|++++|++.|+++.+..  .+...|..+...+...|++++|.+.|++..+....  ++    ..++.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            344555555555555555555555555443  44555555555555555555555555554432111  11    23444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG  419 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g  419 (664)
                      .+...+...|++++|...++++.+.  .|+.                                          ..+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~  119 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLR  119 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHh
Confidence            4444444444444444444444442  1221                                          2233334


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE  499 (664)
Q Consensus       420 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  499 (664)
                      ++++|...++.+.... +.+...+..+...+...|++++|...+++..+.. +.+...|..+...|.+.|++++|...|+
T Consensus       120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4444554444444432 2233444455555555555555555555555433 2345555555556666666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          500 EMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       500 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      +..+.. +.+...|..+...+...|++++|.+.+++..+
T Consensus       198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            655543 33455555566666666666666666655554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=6.5e-13  Score=128.73  Aligned_cols=224  Identities=12%  Similarity=0.019  Sum_probs=163.1

Q ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HH
Q 006012          228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGL--SPK----TA  301 (664)
Q Consensus       228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~  301 (664)
                      ...+..+...+...|+++.  +...++...+..  .+...+..+...|...|++++|++.++.+.+...  .++    ..
T Consensus         5 a~~~~~~g~~~~~~~~~~~--A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDE--AIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHH--HHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            3467778888889999855  458888888776  7889999999999999999999999999876431  112    58


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA  381 (664)
Q Consensus       302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  381 (664)
                      +|..+...+.+.|++++|.+.|++..+.  .|+.       ..+.+.|++++|...++.+.+.... +...+..+...+.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~  150 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHH
Confidence            8999999999999999999999999885  3453       4466678899999999998876422 4567777788888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012          382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA  461 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  461 (664)
                      ..|++++|...+++..... +.+..++..+...+...|++++|...++...+.. +.+..++..+...+.+.|++++|..
T Consensus       151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            8888888888888877654 3355566666666666666666666666655532 2334445555555555555555555


Q ss_pred             HHHHHH
Q 006012          462 AFDRML  467 (664)
Q Consensus       462 ~~~~m~  467 (664)
                      .+++..
T Consensus       229 ~~~~a~  234 (258)
T 3uq3_A          229 TLDAAR  234 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=7.6e-13  Score=125.06  Aligned_cols=199  Identities=16%  Similarity=0.043  Sum_probs=124.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      +++...+..+...+.+.|++++|+..|+++.+.. +.+...|..+...+.+.|++++|+..|++..+... .+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence            3455667777777788888888888888877654 44677777788888888888888888888777543 256677777


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 006012          342 LKGYVKM-----------GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSR  410 (664)
Q Consensus       342 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~  410 (664)
                      ...+...           |++++|...+++..+..+. +...+..+...|...|++++|+..|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            7777777           7777777777666654332 45666666666666677777776666666655  55666666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012          411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM  466 (664)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  466 (664)
                      +..++...|++++|+..|+...+.. +.+...+..+...+.+.|++++|+..+++.
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            6666666666666666666665543 334555566666666666666666665544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=1.5e-12  Score=123.02  Aligned_cols=84  Identities=18%  Similarity=0.093  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          298 PKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLI  377 (664)
Q Consensus       298 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  377 (664)
                      ++...+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|...+++..+.... +...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            3444555555555555555555555555554322 14445555555555555555555555555443321 344444444


Q ss_pred             HHHHHc
Q 006012          378 DAYANA  383 (664)
Q Consensus       378 ~~~~~~  383 (664)
                      ..|...
T Consensus        81 ~~~~~~   86 (217)
T 2pl2_A           81 EAYVAL   86 (217)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            444444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.51  E-value=4.6e-11  Score=117.09  Aligned_cols=224  Identities=10%  Similarity=0.010  Sum_probs=136.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKESGLKPRTKAYN  339 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~  339 (664)
                      +...+..+...|...|++++|++.|++..+.   .+..++..+...+..    .+++++|.+.|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4455566666677777777777777777662   345666666777777    777777777777766654   556666


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012          340 ALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRI  411 (664)
Q Consensus       340 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~l  411 (664)
                      .+...|..    .+++++|...+++..+.+   +..++..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            66666666    677777777777766653   55666666666666    666666666666666543   44455555


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          412 LAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLID  483 (664)
Q Consensus       412 l~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  483 (664)
                      ...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            555555    556666666666655542   34445555555555    555555555555555542   2444445555


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHCC
Q 006012          484 CHFK----CGRYDRAEELFEEMQERG  505 (664)
Q Consensus       484 ~~~~----~g~~~~A~~~~~~m~~~~  505 (664)
                      .|.+    .+++++|.+.|++..+.+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            5555    555555555555555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=5.2e-12  Score=129.53  Aligned_cols=248  Identities=9%  Similarity=0.037  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-TIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      ...|+.+...+.+.|++++|++.|+++++.. +.+...|+.+..++.+.|+ +++|++.|++.++.... +...|+.+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            3445666667777888888888888887754 3457788888888888886 88888888888876443 6778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHH
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD-RGEWQ  422 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~  422 (664)
                      ++...|++++|+..++++++.... +..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            888888888888888888876544 67788888888888888888888888887765 3467777777777777 45545


Q ss_pred             HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------
Q 006012          423 RT-----FQVLKEMKSSGVEPDTHFYNVMIDTFGKYN--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG------  489 (664)
Q Consensus       423 ~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------  489 (664)
                      +|     +..+++..... +-+...|+.+...+.+.|  ++++|.+.+.++ +.. +.+...+..+...|.+.|      
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence            55     46666665543 345566666666666666  466677766666 322 345566666666666653      


Q ss_pred             ---CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 006012          490 ---RYDRAEELFEEM-QERGYFPCTTTYNIMINLL  520 (664)
Q Consensus       490 ---~~~~A~~~~~~m-~~~~~~p~~~t~~~ll~~~  520 (664)
                         ..++|+++|+++ .+.+ +.....|..+...+
T Consensus       330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l  363 (382)
T 2h6f_A          330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence               246677777776 4443 33344444444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=4e-12  Score=124.45  Aligned_cols=233  Identities=8%  Similarity=-0.052  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLKGY  345 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~  345 (664)
                      +......+...|++++|++.|+.+.+.. +.+...+..+...+.+.|++++|.+.|++..+....+  ....|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3445556667777777777777776653 2344466667777777777777777777776632111  133466666667


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF  425 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  425 (664)
                      ...|++++|.+.+++..+.... +..+|..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777766654322 44566666666666666666666666665442 334444444442333334566666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHH
Q 006012          426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNC---LHHAMAAFDRMLSEG-IEPD------TITWNTLIDCHFKCGRYDRAE  495 (664)
Q Consensus       426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~~~------~~~~~~li~~~~~~g~~~~A~  495 (664)
                      +.|+++.+.. +.+...+..+...+...|+   .++|...+++..+.. ..|+      ...|..+...|.+.|++++|.
T Consensus       163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6555555432 2224444444444444444   444444444443320 0011      123444444444445555555


Q ss_pred             HHHHHHHHC
Q 006012          496 ELFEEMQER  504 (664)
Q Consensus       496 ~~~~~m~~~  504 (664)
                      +.|++..+.
T Consensus       242 ~~~~~al~~  250 (272)
T 3u4t_A          242 AAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            555544443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.50  E-value=6.2e-11  Score=116.18  Aligned_cols=224  Identities=10%  Similarity=0.006  Sum_probs=148.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYS  374 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~  374 (664)
                      +..++..+...+...|++++|.+.|++..+.   -+...+..+...|..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4566777777777777888888877777762   245666677777777    777777777777777664   566777


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          375 LLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD----RGEWQRTFQVLKEMKSSGVEPDTHFYNVM  446 (664)
Q Consensus       375 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  446 (664)
                      .+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77777777    777777777777776653   56666666666666    677777777777766654   44555555


Q ss_pred             HHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          447 IDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMIN  518 (664)
Q Consensus       447 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  518 (664)
                      ...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|++.|++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            556655    666666666666666543   34555566666666    666666666666666654   2455555556


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHCC
Q 006012          519 LLGE----QERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       519 ~~~~----~g~~~~a~~~~~~m~~~~  540 (664)
                      .|..    .+++++|.+.+++..+.|
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            6665    666666666666666543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.49  E-value=1.8e-11  Score=118.27  Aligned_cols=198  Identities=14%  Similarity=-0.009  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN  382 (664)
Q Consensus       303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  382 (664)
                      |..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...|..
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~  117 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence            3333444444444444444444443322 113334444444444444444444444444333211 33344444444444


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012          383 AGRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA  461 (664)
Q Consensus       383 ~g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  461 (664)
                      .|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence            444444444444443311111 22333334444444444444444444433322 2233444444444444444444444


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          462 AFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       462 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                      .++.+.+.. +.+...+..+...|.+.|++++|.++++++.+.
T Consensus       197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            444444322 223344444444444455555555555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=1.9e-11  Score=118.11  Aligned_cols=202  Identities=13%  Similarity=0.092  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006012          335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG  414 (664)
Q Consensus       335 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~  414 (664)
                      ...+..+...+...|++++|.+.++++.+... .+..++..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            46678888889999999999999999887643 367888999999999999999999999988764 3467888889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          415 YRDRGEWQRTFQVLKEMKSSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR  493 (664)
Q Consensus       415 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  493 (664)
                      +...|++++|.+.++++.+.+..| +...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999988733334 45777888888999999999999999988764 3467888888999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      |...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999999988765 5677788888888899999999999999988753

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=2.3e-11  Score=114.94  Aligned_cols=200  Identities=8%  Similarity=-0.068  Sum_probs=103.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      +...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.+... .+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence            34455666666666677777776666666543 33455666666666666666666666666655432 24555555666


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          344 GYVKM-GYLKDAEFVVSEMERSGVLPD-EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW  421 (664)
Q Consensus       344 ~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~  421 (664)
                      .+... |++++|...++++.+.+..|+ ...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            66666 666666666666555211222 3445555555555555555555555554432 22344444444444444444


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006012          422 QRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRM  466 (664)
Q Consensus       422 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  466 (664)
                      ++|...++++.+.....+...+..+...+...|+.+.+..+++.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            444444444433221023333333333334444444444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=4e-11  Score=113.26  Aligned_cols=201  Identities=10%  Similarity=-0.080  Sum_probs=101.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID  378 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  378 (664)
                      +...|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence            345566666666666666666666666665432 2455566666666666666666666666655432 24455555555


Q ss_pred             HHHHc-CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006012          379 AYANA-GRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL  456 (664)
Q Consensus       379 ~~~~~-g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  456 (664)
                      .|... |++++|...++++.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            55566 66666666665555421111 13444445555555555555555555544432 22334444444444444444


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      ++|...++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            4444444444432210233334444444444444444444444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.47  E-value=1.2e-11  Score=121.03  Aligned_cols=246  Identities=11%  Similarity=0.025  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 006012          301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD--EHTYSLLID  378 (664)
Q Consensus       301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~  378 (664)
                      ..+......+.+.|++++|++.|++..+.... +...+..+..++...|++++|...+++..+.+..++  ..+|..+..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            34556778889999999999999999886432 455788888999999999999999999988432222  445888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012          379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH  458 (664)
Q Consensus       379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  458 (664)
                      .|...|++++|+..|++..+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765 3466789999999999999999999999987763 4566777777734444459999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 006012          459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR---YDRAEELFEEMQERG-YFPC------TTTYNIMINLLGEQERWED  528 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~t~~~ll~~~~~~g~~~~  528 (664)
                      |...|++..+.. +.+...+..+..++...|+   +++|...+++..+.. -.|+      ...|..+...|...|++++
T Consensus       161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            999999998764 3457778888888888888   888998888886541 1122      2577788888899999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHH
Q 006012          529 VKRLLGNMRAQGLLPNVVTYTTL  551 (664)
Q Consensus       529 a~~~~~~m~~~~~~p~~~~~~~l  551 (664)
                      |.+.++++.+.... +......+
T Consensus       240 A~~~~~~al~~~p~-~~~a~~~l  261 (272)
T 3u4t_A          240 ADAAWKNILALDPT-NKKAIDGL  261 (272)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHHhcCcc-HHHHHHHh
Confidence            99999999886422 44444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.47  E-value=3.5e-12  Score=124.94  Aligned_cols=221  Identities=12%  Similarity=-0.027  Sum_probs=138.0

Q ss_pred             cCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          278 AGDASKAMRFLGMAQGVGL---SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA  354 (664)
Q Consensus       278 ~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  354 (664)
                      .|++++|++.|+.+.+...   +.+..+|..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHH
Confidence            4677888888888776531   11356677777888888888888888888777543 2567777777888888888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS  434 (664)
Q Consensus       355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  434 (664)
                      ...++++.+.... +..++..+...|.+.|++++|...|+++.+..  |+.......+..+...|++++|...+.+....
T Consensus        97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            8888877765322 56677777777777888888887777776643  33333333334445556777777777665543


Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          435 GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE---PDTITWNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       435 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                      . +++...+ .++..+...++.++|...+....+....   .+...+..+...|.+.|++++|...|++..+.
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            2 2222222 2455555556666666666655432110   01344555555666666666666666665554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.47  E-value=1.3e-11  Score=130.43  Aligned_cols=313  Identities=11%  Similarity=0.040  Sum_probs=152.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006012          198 ALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKID-SSLLQKLYKEIECDKIELDGQLLNDVIVGFA  276 (664)
Q Consensus       198 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~  276 (664)
                      .+...+.+.|++++|+.+|++..+.|. ++  .+..+-..+...|... ...+...|+...+.    +...+..|...+.
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            356677888999999999999887762 22  2222222233333330 01233445444432    4444455555344


Q ss_pred             HcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          277 KAG-----DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE---AEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       277 ~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      ..|     ++++|++.|++..+.|. +  ..+..|...|...+..++   +.+.+......|.   ......|...|...
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~  154 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQ  154 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcC
Confidence            433     56667777776666542 2  245555555555544332   3333333333332   23444555555555


Q ss_pred             CCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---
Q 006012          349 GYLKD----AEFVVSEMERSGVLPDEHTYSLLIDAYANAG---RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR---  418 (664)
Q Consensus       349 g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~---  418 (664)
                      +.+++    +..+++.....    +...+..|...|...|   +.++|++.|++..+.+ .++...+..+...|...   
T Consensus       155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~  229 (452)
T 3e4b_A          155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG  229 (452)
T ss_dssp             TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred             CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence            53333    33333332221    2235666666666666   6666666666666555 34444444455555433   


Q ss_pred             -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----
Q 006012          419 -GEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT-F--GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG-----  489 (664)
Q Consensus       419 -g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----  489 (664)
                       +++++|+..|+... .   -+...+..+... +  ...++.++|...|++..+.|   +...+..|...|. .|     
T Consensus       230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~  301 (452)
T 3e4b_A          230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA  301 (452)
T ss_dssp             SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred             CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence             46666666666655 2   233344444444 2  34566666666666666544   4455555555554 33     


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 006012          490 RYDRAEELFEEMQERGYFPCTTTYNIMINLLGE----QERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       490 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~  540 (664)
                      ++++|++.|++.. .|   +...+..+...|..    ..+.++|.+.+++..+.|
T Consensus       302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            6666666666655 33   34455555544444    235666666666665544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.47  E-value=5e-12  Score=121.32  Aligned_cols=200  Identities=13%  Similarity=0.048  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence            3444444445555555555555555554432 22344444444444445555555554444444321 133344444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRT  424 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a  424 (664)
                      +..                                   .|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus       101 ~~~-----------------------------------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A          101 YVV-----------------------------------KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHH-----------------------------------TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHH-----------------------------------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            444                                   444444444444443322 12333344444444444444444


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          425 FQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       425 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                      ...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.++++.+.
T Consensus       145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            44444443321 2234444444445555555555555555544432 223445555555555555555555555555554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.46  E-value=3.7e-12  Score=134.62  Aligned_cols=374  Identities=12%  Similarity=0.091  Sum_probs=226.5

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006012          234 VIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDA---SKAMRFLGMAQGVGLSPKTATYAAVITAL  310 (664)
Q Consensus       234 ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~  310 (664)
                      +...+.+.|+++.  +.+.|....+.|   +...+..|...|...|+.   ++|++.|++..+.    +...+..+...+
T Consensus         9 la~~~~~~g~~~~--A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~   79 (452)
T 3e4b_A            9 LANEALKRGDTVT--AQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL   79 (452)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred             HHHHHHhCCCHHH--HHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence            4445566666643  457777776654   344555666777777887   8888888887753    555666666655


Q ss_pred             HhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          311 SNSG-----RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK---DAEFVVSEMERSGVLPDEHTYSLLIDAYAN  382 (664)
Q Consensus       311 ~~~g-----~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  382 (664)
                      ...+     ++++|.+.|++..+.|..   ..+..|...|...+..+   ++.+.+......|   +...+..|...|..
T Consensus        80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~  153 (452)
T 3e4b_A           80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT  153 (452)
T ss_dssp             HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred             HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence            5555     678888888888876543   25666777777665433   3444455444443   34566777778888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CC
Q 006012          383 AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG---EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY----NC  455 (664)
Q Consensus       383 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~  455 (664)
                      .+.++++......+.+.-...+...+..+...|...|   +.++|++.|+...+.| .++...+..+...|...    ++
T Consensus       154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d  232 (452)
T 3e4b_A          154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD  232 (452)
T ss_dssp             HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred             CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence            7755544444333322212233337778888888888   8889999998888877 56666666677777654    78


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 006012          456 LHHAMAAFDRMLSEGIEPDTITWNTLIDC-H--FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE-----RWE  527 (664)
Q Consensus       456 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-----~~~  527 (664)
                      .++|...|++.. .   -+...+..|... |  ...+++++|++.|++..+.|   +...+..+...|. .|     +++
T Consensus       233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence            899999998887 3   345566666665 3  45788999999999988877   5677777777776 45     889


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          528 DVKRLLGNMRAQGLLPNVVTYTTLVDIYGQ----SGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGE  603 (664)
Q Consensus       528 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  603 (664)
                      +|.+.+++.. .   -+...+..|...|..    ..++++|.+.           |++..+.|.   ......|...|..
T Consensus       305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~-----------~~~Aa~~g~---~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDH-----------LLTAARNGQ---NSADFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHH-----------HHHHHTTTC---TTHHHHHHHHHHS
T ss_pred             HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHH-----------HHHHHhhCh---HHHHHHHHHHHHh
Confidence            9999998887 3   366777778777776    2255555444           666666553   3345556666653


Q ss_pred             ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          604 ----DQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       604 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                          ..+.++|..+++...+.|. ++.......+......++.++|.+..+
T Consensus       367 G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~  416 (452)
T 3e4b_A          367 GKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQ  416 (452)
T ss_dssp             CTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                4588999999999988773 232222222222233445566666655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=1.6e-12  Score=127.45  Aligned_cols=248  Identities=10%  Similarity=-0.015  Sum_probs=194.6

Q ss_pred             HhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012          311 SNSGRTIEAEAVFEELKESGLK---PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE  387 (664)
Q Consensus       311 ~~~g~~~~A~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  387 (664)
                      ...|++++|++.|+++.+....   .+..++..+...+...|++++|...++++.+.... +..+|..+...|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence            3457899999999999986321   24678889999999999999999999999986543 7889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012          388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRML  467 (664)
Q Consensus       388 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  467 (664)
                      +|...|++..+.. +.+...+..+...+...|++++|...++++.+..  |+.......+..+...|++++|...+....
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999998864 4467889999999999999999999999998753  444444455556677799999999998887


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012          468 SEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF---PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN  544 (664)
Q Consensus       468 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  544 (664)
                      ... +++...+. ++..+...++.++|++.+++..+....   .+...+..+...+...|++++|...++++.+..  |+
T Consensus       172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~  247 (275)
T 1xnf_A          172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH  247 (275)
T ss_dssp             HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred             hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence            653 33444444 677778888899999999988765311   115788889999999999999999999999864  42


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHH
Q 006012          545 VVTYTTLVDIYGQSGRFDDAIECL  568 (664)
Q Consensus       545 ~~~~~~li~~~~~~g~~~~A~~~~  568 (664)
                      .  +.....++...|++++|++.+
T Consensus       248 ~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          248 N--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             T--CHHHHHHHHHHHHHHHC----
T ss_pred             h--HHHHHHHHHHHHHHHhhHHHH
Confidence            2  333456777888888877653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.46  E-value=5.3e-12  Score=121.15  Aligned_cols=211  Identities=11%  Similarity=0.066  Sum_probs=154.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006012          334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILA  413 (664)
Q Consensus       334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~  413 (664)
                      ....|..+...+...|++++|...++++.+.... +...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            4456666777777778888888888877765432 57777888888888888888888888887654 446788888889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR  493 (664)
Q Consensus       414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  493 (664)
                      .+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999988764 4567888888899999999999999999988754 3467788888999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012          494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTT  550 (664)
Q Consensus       494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  550 (664)
                      |.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~  232 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHA  232 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHH
Confidence            999999988775 456788888999999999999999999999885422 3444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.45  E-value=1.6e-11  Score=125.95  Aligned_cols=248  Identities=7%  Similarity=0.019  Sum_probs=207.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY-LKDAEFVVSEMERSGVLPDEHTYSLLID  378 (664)
Q Consensus       300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~  378 (664)
                      ...|..+...+.+.|++++|++.|++.++.... +...|+.+..++...|+ +++|+..++++++.... +...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            567888889999999999999999999986543 78899999999999997 99999999999987654 7889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHH
Q 006012          379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK-YNCLH  457 (664)
Q Consensus       379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~  457 (664)
                      .|...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.. +-+...|+.+...+.+ .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999999876 5688899999999999999999999999999875 4578899999999988 66657


Q ss_pred             HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 006012          458 HA-----MAAFDRMLSEGIEPDTITWNTLIDCHFKCG--RYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQE------  524 (664)
Q Consensus       458 ~A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g------  524 (664)
                      +|     +..+++.++.. +-+...|+.+...+.+.|  ++++|++.+.++ +.+ +.+...+..+...|.+.|      
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence            77     58888888764 346788999999998888  689999999998 433 567788889999998874      


Q ss_pred             ---CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHHH
Q 006012          525 ---RWEDVKRLLGNM-RAQGLLPN-VVTYTTLVDIYG  556 (664)
Q Consensus       525 ---~~~~a~~~~~~m-~~~~~~p~-~~~~~~li~~~~  556 (664)
                         ..++|.++++++ .+.  .|. ...|..+...+.
T Consensus       330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence               358999999999 664  343 455655555544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.41  E-value=7.9e-12  Score=130.53  Aligned_cols=283  Identities=16%  Similarity=0.081  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 006012          300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRT----KAYNALLKGYVKMGYLKDAEFVVSEMERS----GV-LPDE  370 (664)
Q Consensus       300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~  370 (664)
                      ...+..+...+...|++++|.+.|+++.+.+.. +.    ..+..+...|...|++++|...+++..+.    +- ....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            345556677778888888888888888775332 32    46777777778888888888887776542    11 1123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          371 HTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF  450 (664)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  450 (664)
                      .++..+...|...|++++|...+++.......               .+               .......++..+...|
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~---------------~~~~~~~~~~~l~~~~  176 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQ---------------LG---------------DRLSEGRALYNLGNVY  176 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HT---------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------hh---------------chHHHHHHHHHHHHHH
Confidence            55666666777777777777777665432100               00               0001122334444444


Q ss_pred             hccCC-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C
Q 006012          451 GKYNC-----------------LHHAMAAFDRMLSE----GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY-F  507 (664)
Q Consensus       451 ~~~g~-----------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~  507 (664)
                      ...|+                 +++|...+++..+.    +. ......+..+...|...|++++|++.+++..+... .
T Consensus       177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence            44444                 55555555443321    10 11234667777788888888888888887765310 0


Q ss_pred             CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHH
Q 006012          508 PC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGL--L---PNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNA  578 (664)
Q Consensus       508 p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~  578 (664)
                      .+    ...+..+...+...|++++|.+.+++..+...  .   ....++..+...|...|++++|...++..    +.+
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~  332 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH----LAI  332 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHH
Confidence            11    23677788888899999999999888775311  1   11567788899999999999999887643    333


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          579 FRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       579 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ......  ......++..+..+|...|++++|.+++++..+
T Consensus       333 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          333 AQELGD--RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            332210  011234778889999999999999999999987

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.40  E-value=1.2e-11  Score=128.69  Aligned_cols=301  Identities=13%  Similarity=0.026  Sum_probs=219.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKES----GLKP  333 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p  333 (664)
                      ......+......+...|++++|...|+++.+.+ +.+    ...|..+...+...|++++|...|++....    +..|
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            3455566677788899999999999999988764 223    357888999999999999999999987542    2111


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 006012          334 -RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-PD----EHTYSLLIDAYANAGR--------------------WE  387 (664)
Q Consensus       334 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~  387 (664)
                       ...++..+...+...|++++|...+++..+.... .+    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             2457788888999999999999999887653110 12    4578888889999999                    99


Q ss_pred             HHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHH
Q 006012          388 SARIVLKEMEVS----H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPD----THFYNVMIDTFGKYNCLH  457 (664)
Q Consensus       388 ~A~~l~~~m~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~  457 (664)
                      +|...+++....    + .+....++..+...+...|++++|...+++..+... .++    ..++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998876542    1 111234677888899999999999999988764210 122    347788888899999999


Q ss_pred             HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 006012          458 HAMAAFDRMLSEGI-EPD----TITWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWE  527 (664)
Q Consensus       458 ~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~  527 (664)
                      +|...+++..+... ..+    ..++..+...|.+.|++++|...+++..+... ..+    ..++..+...+...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            99999988764310 011    45778888899999999999999988765310 111    456778888889999999


Q ss_pred             HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHH
Q 006012          528 DVKRLLGNMRAQ----GLL-PNVVTYTTLVDIYGQSGRFDD  563 (664)
Q Consensus       528 ~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~  563 (664)
                      +|.+.+++..+.    +.. ....++..+...+...|+...
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            999999887653    111 124566677777777776643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.39  E-value=1e-11  Score=129.20  Aligned_cols=311  Identities=14%  Similarity=0.078  Sum_probs=184.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 006012          297 SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERS----GVLP  368 (664)
Q Consensus       297 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~  368 (664)
                      ......+......+...|++++|...|++..+.+.. +    ...+..+...+...|++++|...+++..+.    +-.+
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            345566677777788888888888888887775322 2    245667777777778888887777775432    1111


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHH
Q 006012          369 -DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK-PN----SFIYSRILAGYRDRGE-------------WQRTFQVLK  429 (664)
Q Consensus       369 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~-------------~~~a~~~~~  429 (664)
                       ...++..+...|...|++++|...+++....... .+    ..++..+...|...|+             .+++...  
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--  162 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--  162 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH--
Confidence             1345566666667777777777776665432100 01    2233444444444444             0000000  


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          430 EMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       430 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                                                +++|...+.+..+.    +. .....++..+...|...|++++|.+.+++..+.
T Consensus       163 --------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (406)
T 3sf4_A          163 --------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  216 (406)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred             --------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence                                      45555544443321    10 111335666777777778888888777776543


Q ss_pred             CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012          505 GY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQ  574 (664)
Q Consensus       505 ~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  574 (664)
                      .. .++    ..++..+...+...|++++|...+++..+.... .+    ..++..+...|.+.|++++|.+.++..   
T Consensus       217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---  293 (406)
T 3sf4_A          217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH---  293 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH---
Confidence            10 111    236677777788888888888888777643110 11    457778888888888888888876533   


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHh
Q 006012          575 AVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKEN----GLKP-DVVTYTTLMKALIRVDKFH  643 (664)
Q Consensus       575 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~a~~~~g~~~  643 (664)
                       +.+...   .+-.+. ..++..+...|...|++++|.+++++..+.    +..+ ...++..+...+...|+..
T Consensus       294 -~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          294 -LAIAQE---LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             -HHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             -HHHHHh---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence             222222   111111 346778888888899999999988887652    2122 2456777888887777663

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.38  E-value=1.3e-11  Score=128.73  Aligned_cols=236  Identities=15%  Similarity=0.078  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKES----GL-KPRTK  336 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~  336 (664)
                      ..+..+...+...|++++|++.|+++.+.+ +.+.    ..|..+...+...|++++|.+.|++..+.    +. .....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            344556778899999999999999998864 2233    57888999999999999999999987653    11 12356


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 006012          337 AYNALLKGYVKMGYLKDAEFVVSEMERS----G-VLPDEHTYSLLIDAYANAGR-----------------WESARIVLK  394 (664)
Q Consensus       337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~l~~  394 (664)
                      ++..+...|...|++++|...+++..+.    + ......++..+...|...|+                 +++|+..++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7888899999999999999999887653    1 11134577788888888898                 888887777


Q ss_pred             HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHH
Q 006012          395 EMEVS----HA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPD----THFYNVMIDTFGKYNCLHHAMAAFD  464 (664)
Q Consensus       395 ~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~  464 (664)
                      +....    +. .....++..+...+...|++++|...+++..+... ..+    ..++..+...|...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            65432    10 11223555666666666777777666666543210 011    1244445555555555555555555


Q ss_pred             HHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          465 RMLSEGIE-----PDTITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       465 ~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      +..+....     ....++..+...|...|++++|...+++..
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44431100     012334444444555555555555554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.35  E-value=5.4e-11  Score=119.78  Aligned_cols=164  Identities=16%  Similarity=0.095  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHH
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKES----GLKP-RTKAY  338 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~  338 (664)
                      +......+...|++++|+..|+++.+.. +.+    ...+..+...+...|++++|.+.+++..+.    +..+ ...++
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            3445567788899999999998887753 223    356778888888899999998888876542    1111 24567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 006012          339 NALLKGYVKMGYLKDAEFVVSEMERSGV-LPD----EHTYSLLIDAYANAGR--------------------WESARIVL  393 (664)
Q Consensus       339 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~  393 (664)
                      ..+...+...|++++|...+++..+... ..+    ..++..+...|...|+                    +++|...+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            7778888888888888888877654211 012    3366777777777777                    77777777


Q ss_pred             HHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          394 KEMEVS----H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       394 ~~m~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  432 (664)
                      ++....    + ......++..+...+...|++++|...+++..
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  210 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  210 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            665321    1 01112244555555555666666666555543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.34  E-value=3e-08  Score=108.56  Aligned_cols=427  Identities=11%  Similarity=0.059  Sum_probs=227.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-CChHHHHHHHHHHHhCC-CCCC
Q 006012          187 QRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNK-IDSSLLQKLYKEIECDK-IELD  264 (664)
Q Consensus       187 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~~~~~~l~~~~~~~~-~~~d  264 (664)
                      ...+.|..+|..+|..+.+.+.++.+..+|+++... ++.....|..-+..-.+.+. .+...+..+|+...... .+|+
T Consensus        60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s  138 (679)
T 4e6h_A           60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND  138 (679)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred             HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence            344678889999999999999999999999999886 34455566666666555554 01244567777776643 2477


Q ss_pred             HHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh---------cCChHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDA--------SKAMRFLGMAQG-VGL-SPK-TATYAAVITALSN---------SGRTIEAEAVFE  324 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~l~~  324 (664)
                      +..|..-+....+.++.        +...++|+.+.. .|. .++ ...|...+.....         .++++.+.++|+
T Consensus       139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~  218 (679)
T 4e6h_A          139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK  218 (679)
T ss_dssp             HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence            77777777766555543        233466766543 455 443 4567777765442         334666777777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC-
Q 006012          325 ELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS--HA-  401 (664)
Q Consensus       325 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~-  401 (664)
                      ..+......-..+|......-...+. ..+.+++.+.                     ..+++.|...+.++...  ++ 
T Consensus       219 raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~  276 (679)
T 4e6h_A          219 TLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLK  276 (679)
T ss_dssp             HHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHh
Confidence            77743111112333322221111111 0011111110                     01222233333332110  00 


Q ss_pred             ---C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012          402 ---K-----------P-----N---SFIYSRILAGYRDRG-------EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK  452 (664)
Q Consensus       402 ---~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  452 (664)
                         +           |     +   ...|...+..--..+       ..+.+..+|+++.... +-....|...+..+..
T Consensus       277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~  355 (679)
T 4e6h_A          277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGE  355 (679)
T ss_dssp             CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence               0           0     0   123333333222221       1233445566655432 3456666666666666


Q ss_pred             cCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------H
Q 006012          453 YNCLHHAM-AAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG---------YFPC------------T  510 (664)
Q Consensus       453 ~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~  510 (664)
                      .|+.++|. .++++.... ++.+...|-..+....+.|++++|.++|+++++..         -.|+            .
T Consensus       356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~  434 (679)
T 4e6h_A          356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT  434 (679)
T ss_dssp             HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence            66666675 777776653 23455556666666667777777777777766431         0121            2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012          511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG-RFDDAIECLEGLSDQAVNAFRVMRTDGLKP  589 (664)
Q Consensus       511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p  589 (664)
                      ..|...++...+.|..+.|..+|.++.+.-......+|...+..-.+.| +++.|.++|+..++           . ..-
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk-----------~-~p~  502 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK-----------Y-FAT  502 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-----------H-HTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------H-CCC
Confidence            3466666666666777777777777766411112333333333333333 36666666542221           1 112


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          590 SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKP--DVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       590 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      +...|...+......|+.+.|..+|++.+.....+  ....|...++.-.+.|+.+.+.++++
T Consensus       503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44455666666666777777777777776642211  23566666666666777777776666

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.34  E-value=7.7e-11  Score=118.65  Aligned_cols=281  Identities=14%  Similarity=0.079  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHH
Q 006012          301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERS----GVL-PDEH  371 (664)
Q Consensus       301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~  371 (664)
                      ..+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|.+.+++..+.    +.. ....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            44555666777777888888887777765322 2    355666777777777777777777765432    111 1134


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          372 TYSLLIDAYANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF  450 (664)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  450 (664)
                      ++..+...|...|++++|...+++...... ..+..                               ....++..+...+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~  133 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVY  133 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHH
Confidence            555566666666666666666665543210 01100                               0012333444444


Q ss_pred             hccCC--------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 006012          451 GKYNC--------------------LHHAMAAFDRMLSE----GI-EPDTITWNTLIDCHFKCGRYDRAEELFEEMQER-  504 (664)
Q Consensus       451 ~~~g~--------------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-  504 (664)
                      ...|+                    +++|...+++..+.    +. ......+..+...|...|++++|.+.+++..+. 
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  213 (338)
T 3ro2_A          134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA  213 (338)
T ss_dssp             HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            44444                    45555554443321    10 111345667777788888888888888877543 


Q ss_pred             ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHH
Q 006012          505 ---GY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQA  575 (664)
Q Consensus       505 ---~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a  575 (664)
                         +. .....++..+...+...|++++|.+.+++..+.... .+    ..++..+...|...|++++|...++..    
T Consensus       214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----  289 (338)
T 3ro2_A          214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH----  289 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH----
Confidence               10 011236777788888888999888888877653111 11    567788889999999999999887633    


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          576 VNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       576 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      +........  ......++..+...|.+.|++++|..+++++.+
T Consensus       290 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          290 LAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            333322210  011134678889999999999999999999887

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.33  E-value=1.5e-09  Score=108.36  Aligned_cols=218  Identities=13%  Similarity=0.111  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012          282 SKAMRFLGMAQGVGLSPKTATYAAVITALSN-------SGRT-------IEAEAVFEELKESGLKPRTKAYNALLKGYVK  347 (664)
Q Consensus       282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  347 (664)
                      ++|..+|+++.... +.+...|..++..+..       .|++       ++|..+|++..+.-.+-+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            56666777666542 3456666666666553       3554       6666666666652112244566666666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 006012          348 MGYLKDAEFVVSEMERSGVLPDEH-TYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR-DRGEWQRTF  425 (664)
Q Consensus       348 ~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~  425 (664)
                      .|++++|.++|++..+.... +.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|.
T Consensus       112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666654221 222 566666666666666666666666655431 22233322222211 135555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          426 QVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG-IEP--DTITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       426 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      .+|+...+.. +.+...+..++..+.+.|++++|..+|++..+.. +.|  ....|..++..+.+.|+.++|..+++++.
T Consensus       190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555544321 2234444444444444455555555554444431 121  23344444444444444444444444444


Q ss_pred             H
Q 006012          503 E  503 (664)
Q Consensus       503 ~  503 (664)
                      +
T Consensus       269 ~  269 (308)
T 2ond_A          269 T  269 (308)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.32  E-value=4e-10  Score=102.96  Aligned_cols=168  Identities=13%  Similarity=0.056  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL  342 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  342 (664)
                      -+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|...+......... +...+..+.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~   80 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG   80 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence            356778888888888888888888888887754 446778888888888888888888888888775433 566777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          343 KGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ  422 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~  422 (664)
                      ..+...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence            8888888888888888887765433 67777888888888888888888888887664 456677777888888888888


Q ss_pred             HHHHHHHHHHHC
Q 006012          423 RTFQVLKEMKSS  434 (664)
Q Consensus       423 ~a~~~~~~m~~~  434 (664)
                      +|++.|++..+.
T Consensus       159 ~A~~~~~~al~~  170 (184)
T 3vtx_A          159 EAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            888888877764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=1.6e-09  Score=108.16  Aligned_cols=218  Identities=10%  Similarity=0.021  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 006012          317 IEAEAVFEELKESGLKPRTKAYNALLKGYVK-------MGYL-------KDAEFVVSEMER-SGVLPDEHTYSLLIDAYA  381 (664)
Q Consensus       317 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~  381 (664)
                      ++|..+|++.+... +-+...|..++..+..       .|++       ++|..+|++..+ ... -+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            67888998888753 3367788888777753       5775       889999999887 332 25678888899999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHH
Q 006012          382 NAGRWESARIVLKEMEVSHAKPNSF-IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTF-GKYNCLHHA  459 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~A  459 (664)
                      +.|++++|..+|++..+... .+.. .|..++..+.+.|++++|..+|++..+.. +.+...|....... ...|+.++|
T Consensus       111 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999887432 2233 78888888888899999999998888764 33444554433332 236888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          460 MAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFP--CTTTYNIMINLLGEQERWEDVKRLLGNM  536 (664)
Q Consensus       460 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m  536 (664)
                      ..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.|  ....|..++....+.|+.+.|..+++++
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888887653 3467788888888888888888888888888863 343  4667888888888888888888888888


Q ss_pred             HHC
Q 006012          537 RAQ  539 (664)
Q Consensus       537 ~~~  539 (664)
                      .+.
T Consensus       268 ~~~  270 (308)
T 2ond_A          268 FTA  270 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.31  E-value=3.4e-08  Score=108.10  Aligned_cols=213  Identities=9%  Similarity=-0.001  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR-IVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEM  431 (664)
Q Consensus       353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m  431 (664)
                      .+..+|+++...- .-+...|-..+..+.+.|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+.+
T Consensus       327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455666666542 235667777777777777777775 777777653 3445556666777777777777777777776


Q ss_pred             HHCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc-
Q 006012          432 KSSG---------VEPD------------THFYNVMIDTFGKYNCLHHAMAAFDRMLSE-GIEPDTITWNTLIDCHFKC-  488 (664)
Q Consensus       432 ~~~g---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~-  488 (664)
                      ....         -.|+            ..+|...+....+.|..+.|..+|....+. + ......|...+..-.+. 
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence            6421         0121            235666666666677777777777777764 2 11222333222222233 


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 006012          489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP--NVVTYTTLVDIYGQSGRFDDAIE  566 (664)
Q Consensus       489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~  566 (664)
                      ++.+.|.++|+..++. ++-+...|...++.....|+.+.|..+|++.+.....+  ....|...++.-.+.|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3477777777777766 24455666667776667777777887777777653221  24566777777777777777766


Q ss_pred             HHh
Q 006012          567 CLE  569 (664)
Q Consensus       567 ~~~  569 (664)
                      +.+
T Consensus       563 v~~  565 (679)
T 4e6h_A          563 LEK  565 (679)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.31  E-value=2.2e-10  Score=118.32  Aligned_cols=232  Identities=13%  Similarity=0.010  Sum_probs=155.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 006012          411 ILAGYRDRGEWQRTFQVLKEMKSS----GVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG--I----EPDTITWN  479 (664)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~~~~~~~~  479 (664)
                      ....+...|++++|...+++..+.    +-.+ ...++..+...|...|++++|...+.+..+..  .    .....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344555666666666666665542    1111 23456666677777777777777777665421  0    11235677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006012          480 TLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GL-LPNVVTYT  549 (664)
Q Consensus       480 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~  549 (664)
                      .+...|...|++++|.+.|++..+... .++    ..++..+...|...|++++|.+.+.+..+.    +. .....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            788888888999999988888764310 011    246778888899999999999999888772    22 23467788


Q ss_pred             HHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-
Q 006012          550 TLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQR---DAEAFAVLQYMKENGLKPD-  625 (664)
Q Consensus       550 ~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-  625 (664)
                      .+...|.+.|++++|.+.++.    |+++.....   -......+..+...|...|+   .++|+.++++.   +..|+ 
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~----al~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~  338 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSK----GMAYSQKAG---DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL  338 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH----HHHHHHHHT---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHH----HHHHHHHcC---CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence            899999999999999988763    333332221   11112246778888888998   77777776665   33333 


Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012          626 VVTYTTLMKALIRVDKFHKVFSSYLFF  652 (664)
Q Consensus       626 ~~~~~~l~~a~~~~g~~~~A~~~~~~~  652 (664)
                      ...+..+...|.+.|++++|...|+..
T Consensus       339 ~~~~~~la~~y~~~g~~~~A~~~~~~a  365 (383)
T 3ulq_A          339 EDFAIDVAKYYHERKNFQKASAYFLKV  365 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            457778999999999999999999844

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.30  E-value=1.7e-10  Score=122.76  Aligned_cols=211  Identities=11%  Similarity=0.021  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCL-HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFE  499 (664)
Q Consensus       421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  499 (664)
                      +++++..+++..... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            445566666555432 45677888888888888888 88888888888764 3457888899999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChH
Q 006012          500 EMQERGYFPCTTTYNIMINLLGEQ---------ERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS--------GRFD  562 (664)
Q Consensus       500 ~m~~~~~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~  562 (664)
                      +..+..  |+...+..+...+...         |++++|.+.+++..+.... +...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            998875  6678888888899888         9999999999999886433 688899999999888        8888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          563 DAIECLEGLSDQAVNAFRVMRTDGLKP----SNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR  638 (664)
Q Consensus       563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~  638 (664)
                      +|++.++           +....  .|    +...|..+..+|...|++++|++.|+++.+.. +.+...+..+..++..
T Consensus       239 ~A~~~~~-----------~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          239 QALSAYA-----------QAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEF  304 (474)
T ss_dssp             HHHHHHH-----------HHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----------HHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            8887754           33331  34    67789999999999999999999999999842 3356788999999999


Q ss_pred             cCCHhHHHHHHH
Q 006012          639 VDKFHKVFSSYL  650 (664)
Q Consensus       639 ~g~~~~A~~~~~  650 (664)
                      .|++++|.+.++
T Consensus       305 lg~~~eAi~~~~  316 (474)
T 4abn_A          305 LSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998776

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.29  E-value=6.6e-10  Score=101.52  Aligned_cols=165  Identities=13%  Similarity=0.067  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          370 EHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT  449 (664)
Q Consensus       370 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  449 (664)
                      ..+|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            3444444444444555555555554444432 2234444444445555555555555554444332 2234444444445


Q ss_pred             HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          450 FGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDV  529 (664)
Q Consensus       450 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a  529 (664)
                      +...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence            555555555555555554432 2344555555555566666666666666555544 34455555555666666666666


Q ss_pred             HHHHHHHHH
Q 006012          530 KRLLGNMRA  538 (664)
Q Consensus       530 ~~~~~~m~~  538 (664)
                      .+.+++.++
T Consensus       161 ~~~~~~al~  169 (184)
T 3vtx_A          161 VKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666665555

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=2.7e-10  Score=121.09  Aligned_cols=213  Identities=8%  Similarity=0.008  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRW-ESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLK  429 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  429 (664)
                      ++++.+.++....... .+...+..+...|...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444445554443321 2555666666666666666 66666666665543 3345666666666666667777776666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 006012          430 EMKSSGVEPDTHFYNVMIDTFGKY---------NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC--------GRYD  492 (664)
Q Consensus       430 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~  492 (664)
                      +..+.  .|+...+..+...+...         |++++|+..+++..+.. +.+...|..+..+|...        |+++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            66655  35556666666677776         77777777777777654 34567777777777777        7888


Q ss_pred             HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          493 RAEELFEEMQERGYF---PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       493 ~A~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      +|++.|++..+.. +   .+...|..+..+|...|++++|.+.+++..+.... +...+..+..++...|++++|++.+.
T Consensus       239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888887764 3   47778888888888888888888888888775432 56677888888888888888877655


Q ss_pred             h
Q 006012          570 G  570 (664)
Q Consensus       570 ~  570 (664)
                      .
T Consensus       317 ~  317 (474)
T 4abn_A          317 K  317 (474)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.28  E-value=2.4e-10  Score=118.04  Aligned_cols=229  Identities=8%  Similarity=-0.052  Sum_probs=122.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC----CCHHHHH
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGV----GLSP-KTATYAAVITALSNSGRTIEAEAVFEELKESG--LK----PRTKAYN  339 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~----p~~~~~~  339 (664)
                      ....+...|++++|++.|++..+.    +-.+ ...+|..+...+...|++++|...+++..+..  ..    ....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            445566677777777777777653    1111 23566777777777777777777777665421  10    0134566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCCHHHHH
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMERSGVL-PD----EHTYSLLIDAYANAGRWESARIVLKEMEVS----HA-KPNSFIYS  409 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~~~~~~~~  409 (664)
                      .+...|...|++++|...+++..+.... .+    ..++..+...|...|++++|+..+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            6667777777777777777666532100 11    235566666666777777777666666541    11 23344556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 006012          410 RILAGYRDRGEWQRTFQVLKEMKSS----GVEPDTHFYNVMIDTFGKYNC---LHHAMAAFDRMLSEGIEP-DTITWNTL  481 (664)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~-~~~~~~~l  481 (664)
                      .+...+.+.|++++|...+++..+.    +.+.....+..+...+...|+   +++|..+++..   +..+ ....+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            6666666666666666666654432    111111223344444555555   34444443332   1111 12234444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 006012          482 IDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~  502 (664)
                      ...|.+.|++++|.+.|++..
T Consensus       346 a~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            455555555555555555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=2.9e-11  Score=120.61  Aligned_cols=172  Identities=13%  Similarity=0.102  Sum_probs=124.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV-------GLSPKTATYAAVITALSNSGRTIEAEAVFEELKES-----  329 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----  329 (664)
                      +.+..++..+...|...|++++|...|+++.+.       ..+....++..+...+...|++++|...|++..+.     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            334667888889999999999999999888762       22334667888889999999999999999887753     


Q ss_pred             -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 006012          330 -GL-KPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------GV-LPDEHTYSLLIDAYANAGRWESARIVLKEMEVS-  399 (664)
Q Consensus       330 -~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-  399 (664)
                       +. +....++..+...|...|++++|...++++.+.      +. .....++..+...|...|++++|+..+++.... 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             22 223567788888888889988888888887653      11 123456677778888888888888888877653 


Q ss_pred             -----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          400 -----H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       400 -----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                           + .+....++..+...|...|++++|...++++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 1 112234566677777777777777777777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=3.1e-11  Score=120.40  Aligned_cols=170  Identities=14%  Similarity=0.112  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKES-------GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------G  365 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g  365 (664)
                      +..++..+...+...|++++|..+|+++.+.       ..+....++..+...|...|++++|...+++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4667888999999999999999999998763       22334567888888999999999999999887753      1


Q ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 006012          366 V-LPDEHTYSLLIDAYANAGRWESARIVLKEMEVS------H-AKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS---  434 (664)
Q Consensus       366 ~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---  434 (664)
                      - .....++..+...|...|++++|...+++..+.      + .+.....+..+...+...|++++|.+.++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 223566777888888888888888888877653      1 1223345666666777777777777777666542   


Q ss_pred             ---CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006012          435 ---GVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLS  468 (664)
Q Consensus       435 ---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  468 (664)
                         +..| ...++..+...|...|++++|...++++.+
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               1111 233455556666666666666666665553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.22  E-value=6.6e-09  Score=106.70  Aligned_cols=231  Identities=13%  Similarity=0.089  Sum_probs=139.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC----CCHHH
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKS----SGVE--P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE----PDTIT  477 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~  477 (664)
                      ..+...+...|++++|...+++...    .+..  | ....+..+...+...|++++|...+++..+....    .....
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            3444455555555555555555432    1211  2 2234455666667777777777777766543211    12356


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFP-C-TTTYN----IMINLLGEQERWEDVKRLLGNMRAQGLLP---NVVTY  548 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~-~~t~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~  548 (664)
                      +..+...+...|++++|...+++.....-.+ . .....    ..+..+...|++++|...+++.......+   ....+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            6777778888888888888888876431111 1 11111    23344668889999988888876543221   13356


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 006012          549 TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN----GLK  623 (664)
Q Consensus       549 ~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~  623 (664)
                      ..+...+...|++++|...++...+.    .   ...|..++. ..+..+..++...|+.++|...+++..+.    |..
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~----~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~  329 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNEN----A---RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI  329 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH----H---HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH----H---HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHH
Confidence            77788899999999999887643322    1   222322233 25667788899999999999999988752    221


Q ss_pred             ----CCHHHHHHHHHHHHhcCCHhHHH
Q 006012          624 ----PDVVTYTTLMKALIRVDKFHKVF  646 (664)
Q Consensus       624 ----p~~~~~~~l~~a~~~~g~~~~A~  646 (664)
                          ........++..+...+.++++.
T Consensus       330 ~~~~~~g~~~~~ll~~~~~~~~~~~~~  356 (373)
T 1hz4_A          330 SHFVIEGEAMAQQLRQLIQLNTLPELE  356 (373)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHccHHHHHHHHHHHhCCCCchHH
Confidence                12234556777777777765544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.20  E-value=1.7e-09  Score=111.54  Aligned_cols=230  Identities=10%  Similarity=-0.019  Sum_probs=150.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----C-CC-CCHHHHHH
Q 006012          412 LAGYRDRGEWQRTFQVLKEMKSSGV-EP----DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSE----G-IE-PDTITWNT  480 (664)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~-~~~~~~~~  480 (664)
                      ...+...|++++|...|++..+... .+    ...++..+...|...|+++.|...+.+..+.    + .. ....+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            3445666777777777776654310 12    2345666777777777777777777766542    1 01 12446777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 006012          481 LIDCHFKCGRYDRAEELFEEMQER----GYF-PCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYTT  550 (664)
Q Consensus       481 li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~  550 (664)
                      +...|...|++++|.+.|++..+.    +.. ....++..+...|...|++++|.+.+.+..+     .... ...++..
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~  266 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG  266 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence            788888888888888888877652    111 1134677778888888888888888888876     4322 3677888


Q ss_pred             HHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-H
Q 006012          551 LVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQR---DAEAFAVLQYMKENGLKPD-V  626 (664)
Q Consensus       551 li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~  626 (664)
                      +...|.+.|++++|...++..    +++..   ..+-......+..+...+...|+   .++|+.++++   .+..|+ .
T Consensus       267 la~~~~~~g~~~~A~~~~~~a----l~~~~---~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~  336 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEG----LDHIT---ARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE  336 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH----HHHCC---TTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH----HHHHH---HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence            888899999999888876522    22111   11111123356666777777788   7777777665   233333 3


Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006012          627 VTYTTLMKALIRVDKFHKVFSSYLFF  652 (664)
Q Consensus       627 ~~~~~l~~a~~~~g~~~~A~~~~~~~  652 (664)
                      ..+..+...|.+.|++++|...|+..
T Consensus       337 ~~~~~la~~y~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          337 ACARSAAAVFESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            56678888999999999999998844

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.20  E-value=4.3e-09  Score=108.42  Aligned_cols=306  Identities=9%  Similarity=-0.019  Sum_probs=207.3

Q ss_pred             CCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhC--CCC--CCHHHHHHHHHHH--HhcCChHHHH---------HHHHH
Q 006012          263 LDGQLLNDVIVGF--AKAGDASKAMRFLGMAQGV--GLS--PKTATYAAVITAL--SNSGRTIEAE---------AVFEE  325 (664)
Q Consensus       263 ~d~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--g~~--~~~~~~~~li~~~--~~~g~~~~A~---------~l~~~  325 (664)
                      +...+-+.|-..|  ...+++++|.++++++.+.  .+.  .+...|-.++..-  ...+....+.         +.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            4444555555555  7789999999999887542  122  2344444444321  1112222222         55555


Q ss_pred             HHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          326 LKESGLKPR----TKAYNALLKGYVKMGYLKDAEFVVSEMERSGV-LPD----EHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       326 m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      +.....+.+    ...+......+...|++++|...+++..+... .++    ..++..+...|...|++++|...+++.
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            543211111    11233345566788999999999999875421 122    457788899999999999999999887


Q ss_pred             HhcCC--C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006012          397 EVSHA--K----PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSS----GVE-PDTHFYNVMIDTFGKYNCLHHAMAAFDR  465 (664)
Q Consensus       397 ~~~~~--~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~  465 (664)
                      .+...  .    ....+++.+...|...|++++|.+.+.+..+.    +.. ....++..+...|...|++++|...+++
T Consensus       168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            65311  1    12457788899999999999999999887652    211 1235778888999999999999999999


Q ss_pred             HHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 006012          466 MLS-----EGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPCTTTYNIMINLLGEQER---WEDVKRLL  533 (664)
Q Consensus       466 m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~  533 (664)
                      ..+     .. +....++..+...|.+.|++++|...+++..+.    +-+.....+..+...+...++   +.+|...+
T Consensus       248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            886     43 233678888999999999999999999998764    222234456666667777888   67777776


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhH
Q 006012          534 GNMRAQGLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLS  572 (664)
Q Consensus       534 ~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~  572 (664)
                      ++   .+..| ....+..+...|.+.|++++|.+.++...
T Consensus       327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            65   22222 23566788999999999999999876433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.19  E-value=1e-08  Score=105.33  Aligned_cols=163  Identities=10%  Similarity=-0.003  Sum_probs=95.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 006012          270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFEELKESGL-KPR----TKAYNA  340 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~  340 (664)
                      .....+...|++++|...+++........+.    ..++.+...+...|++++|.+.+++...... ..+    ..+++.
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3444566778888888888887764322222    2456666777788888888888877654211 111    123455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CHHHHH
Q 006012          341 LLKGYVKMGYLKDAEFVVSEMERS----GVL--P-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP----NSFIYS  409 (664)
Q Consensus       341 li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~----~~~~~~  409 (664)
                      +...+...|++++|...+++..+.    +..  | ...++..+...|...|++++|...+++........    ...++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            666677777777777777766532    111  1 12344556666677777777777776665432111    123444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 006012          410 RILAGYRDRGEWQRTFQVLKEMK  432 (664)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~m~  432 (664)
                      .+...+...|++++|...+++..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555566666655555543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.16  E-value=5e-09  Score=95.12  Aligned_cols=164  Identities=16%  Similarity=0.100  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      ..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            455666777777888888888887776543 3456777777778888888888888888777653 23566777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTF  425 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  425 (664)
                      ...|++++|.+.++++.+... .+...+..+...|...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            777777777777777766532 256667777777777777777777777776553 345566666666777777777777


Q ss_pred             HHHHHHHH
Q 006012          426 QVLKEMKS  433 (664)
Q Consensus       426 ~~~~~m~~  433 (664)
                      ..++.+.+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.14  E-value=5.1e-09  Score=95.07  Aligned_cols=95  Identities=12%  Similarity=-0.019  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL  520 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~  520 (664)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+...+
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  154 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHH
Confidence            333334444444444444444444443322 1233444444444444444444444444444432 22344444444444


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 006012          521 GEQERWEDVKRLLGNMR  537 (664)
Q Consensus       521 ~~~g~~~~a~~~~~~m~  537 (664)
                      ...|++++|.+.++++.
T Consensus       155 ~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          155 EQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            44444444444444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.10  E-value=3.3e-09  Score=117.48  Aligned_cols=168  Identities=15%  Similarity=0.084  Sum_probs=145.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      +-+...++.|...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++.++.... +...|+.+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            3456788999999999999999999999998864 345889999999999999999999999999886432 68899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEW  421 (664)
Q Consensus       342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~  421 (664)
                      ..+|.+.|++++|.+.|++..+.... +..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence            99999999999999999999886543 68899999999999999999999999998765 45678899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 006012          422 QRTFQVLKEMKS  433 (664)
Q Consensus       422 ~~a~~~~~~m~~  433 (664)
                      ++|.+.++++.+
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888877654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.05  E-value=3e-08  Score=93.86  Aligned_cols=196  Identities=12%  Similarity=0.010  Sum_probs=141.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006012          333 PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRIL  412 (664)
Q Consensus       333 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll  412 (664)
                      .|...+......+...|++++|...|++..+....++...+..+...|...|++++|+..+++..+.. +.+...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35677888888888999999999999988876544577777778888889999999999998888764 33566788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 006012          413 AGYRDRGEWQRTFQVLKEMKSSGVEPDT-------HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD---TITWNTLI  482 (664)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li  482 (664)
                      ..+...|++++|...+++..+.. +.+.       ..|..+...+...|++++|+..|++..+..  |+   ...|..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence            88889999999999998887753 3344       456777777888888888888888887653  43   45666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                      .+|...|     ..+++++...+ ..+...|....  ....+.+++|...+++..+..
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            6665443     34455554443 23344444433  234456788888888888753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.04  E-value=1.7e-09  Score=105.89  Aligned_cols=173  Identities=12%  Similarity=0.074  Sum_probs=125.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQER------GY-FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ------G  540 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------~  540 (664)
                      ...++..+...|...|++++|+..++++.+.      +- +....++..+...+...|++++|.+.+.++.+.      .
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            3556777777888888888888888877643      11 223456777888888888888888888887754      1


Q ss_pred             C-CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          541 L-LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       541 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  618 (664)
                      - .....++..+...|...|++++|++.++..    ++.+...... -.| ...++..+..+|...|++++|+.+++++.
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA----LEIYATRLGP-DDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH----HHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1 123567888899999999999999887633    3333322211 122 24578889999999999999999999988


Q ss_pred             HC------------------------------------------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          619 EN------------------------------------------------GLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       619 ~~------------------------------------------------g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      +.                                                ..+....++..+..+|.+.|++++|.+.|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  276 (283)
T 3edt_B          197 TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED  276 (283)
T ss_dssp             HHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            63                                                112234578889999999999999999998


Q ss_pred             H
Q 006012          651 F  651 (664)
Q Consensus       651 ~  651 (664)
                      .
T Consensus       277 ~  277 (283)
T 3edt_B          277 C  277 (283)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.04  E-value=1.2e-08  Score=112.90  Aligned_cols=159  Identities=6%  Similarity=-0.011  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF  486 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  486 (664)
                      .|+.+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|+..|++.++.. +-+...|..+..+|.
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34444444444444444444444443322 2233444444444445555555555554444432 123445555555555


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012          487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIE  566 (664)
Q Consensus       487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  566 (664)
                      +.|++++|++.|++.++.+ +-+...|+.+..++.+.|++++|.+.+++.++.... +...+..+..+|...|++++|.+
T Consensus        89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHH
Confidence            5555555555555555443 334455555555555555555555555555553211 34555555555555555555555


Q ss_pred             HHh
Q 006012          567 CLE  569 (664)
Q Consensus       567 ~~~  569 (664)
                      .++
T Consensus       167 ~~~  169 (723)
T 4gyw_A          167 RMK  169 (723)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.04  E-value=3.2e-08  Score=93.73  Aligned_cols=197  Identities=13%  Similarity=0.034  Sum_probs=149.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL  342 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  342 (664)
                      .|...+......+...|++++|++.|++..+...+++...+..+..++.+.|++++|++.|++..+.... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4567788888899999999999999999888653377788888999999999999999999999876433 567888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 006012          343 KGYVKMGYLKDAEFVVSEMERSGVLPDE-------HTYSLLIDAYANAGRWESARIVLKEMEVSHAKP--NSFIYSRILA  413 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~~~~ll~  413 (664)
                      ..+...|++++|...+++..+.... +.       ..|..+...+...|++++|+..|++..+.. +.  +...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            9999999999999999998876432 44       457788888899999999999999998753 22  3566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 006012          414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG  470 (664)
Q Consensus       414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  470 (664)
                      +|...|     ...++++...+ ..+...|.....  ...+.+++|...+++..+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence            776544     33445555443 233444444332  33456889999999988764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.97  E-value=5.3e-09  Score=102.22  Aligned_cols=120  Identities=12%  Similarity=0.029  Sum_probs=60.0

Q ss_pred             hcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 006012          312 NSGRTIEAEAVFEELKES-------GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS------GV-LPDEHTYSLLI  377 (664)
Q Consensus       312 ~~g~~~~A~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li  377 (664)
                      ..|++++|+..|++..+.       ..+....++..+...|...|++++|...++++.+.      +- .....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            345555555555554431       11123455666666666677777777666666542      11 11234555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006012          378 DAYANAGRWESARIVLKEMEVSH-------AKPNSFIYSRILAGYRDRGEWQRTFQVLKEM  431 (664)
Q Consensus       378 ~~~~~~g~~~~A~~l~~~m~~~~-------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m  431 (664)
                      ..|...|++++|...+++.....       .+....++..+...|...|++++|...++++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666666666666554320       0112233444444444444444444444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.92  E-value=3e-07  Score=89.43  Aligned_cols=242  Identities=10%  Similarity=0.001  Sum_probs=161.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006012          275 FAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDA  354 (664)
Q Consensus       275 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  354 (664)
                      ..-.|++..++.-...+..   ......-..+.+++...|++...         ....|....+..+...+ ..+    |
T Consensus        23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a   85 (310)
T 3mv2_B           23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N   85 (310)
T ss_dssp             HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred             HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence            4456888887773332211   22233444455777777776642         12334444444444433 322    6


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                      ...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus        86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            77777777655 44666667888889999999999999998876553 24667788888999999999999999999877


Q ss_pred             CCCCC-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006012          434 SGVEP-----DTHFYNVMIDTF--GKYN--CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER  504 (664)
Q Consensus       434 ~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  504 (664)
                      .  .|     +..+...+..++  ...|  +..+|..+|+++.+.  .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5  45     355566666553  2233  899999999998765  355444455555888999999999999876543


Q ss_pred             -----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          505 -----G----YFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       505 -----~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  540 (664)
                           .    -+.+..++..++......|+  +|.+++.++.+..
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence                 0    13456666566666666676  8889999998863

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.89  E-value=1.1e-07  Score=80.84  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      .+..+...+...|++++|.++|+.+.+.+ +.+...+..+...+...|++++|.+.|+++.+.+. .+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence            35556666777777777777777766543 33556666666777777777777777777665432 24556666666666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEV  398 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  398 (664)
                      ..|++++|.+.++++.+... .+..++..+...|.+.|++++|...++++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            66666666666666665432 2455566666666666666666666666554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.85  E-value=1.3e-07  Score=93.27  Aligned_cols=92  Identities=11%  Similarity=-0.047  Sum_probs=44.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGV----GLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR----TKAYNA  340 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~  340 (664)
                      ....|...|++++|.+.|++....    |-+++ ..+|+.+..+|.+.|++++|+..|++..+.... .+    ..+++.
T Consensus        43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344555666666666666555431    21111 345555666666666666666666555431100 00    223444


Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHH
Q 006012          341 LLKGYVKM-GYLKDAEFVVSEME  362 (664)
Q Consensus       341 li~~~~~~-g~~~~a~~~~~~m~  362 (664)
                      +...|... |++++|...+++..
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHH
Confidence            44444443 55555554444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.84  E-value=1.6e-07  Score=79.79  Aligned_cols=126  Identities=14%  Similarity=0.248  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012          373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK  452 (664)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  452 (664)
                      |..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            4444555555555555555555554432 2234444444444444455555554444444332 2233333444444444


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      .|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            444444444444443322 122333333444444444444444444433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.84  E-value=7.1e-08  Score=95.27  Aligned_cols=212  Identities=10%  Similarity=0.058  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006012          280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES----GLKPR-TKAYNALLKGYVKMGYLKDA  354 (664)
Q Consensus       280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a  354 (664)
                      ++++|.+.|+.+               +..|...|++++|.+.|++..+.    |..++ ..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777665               34567788888888888776542    21111 35677777777777777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 006012          355 EFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR-GEWQRTFQVLKEMKS  433 (664)
Q Consensus       355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~  433 (664)
                      ...+++..+..               ...|+...+               ..++..+...|... |++++|+..|++..+
T Consensus        97 ~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           97 VDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            77777665421               111111111               11233334444443 555555544444433


Q ss_pred             CCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          434 SGV-EPD----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT------ITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       434 ~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      ... ..+    ..++..+...+.+.|++++|...|++..+.......      ..|..+..+|...|++++|...|++..
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  226 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ  226 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            100 000    234555666666666666666666666654322111      145556666667777777777777665


Q ss_pred             HCCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006012          503 ERGYFPC------TTTYNIMINLLG--EQERWEDVKRLLGNMRA  538 (664)
Q Consensus       503 ~~~~~p~------~~t~~~ll~~~~--~~g~~~~a~~~~~~m~~  538 (664)
                      +..  |+      ...+..++.++.  ..+++++|...++++..
T Consensus       227 ~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          227 SED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             CC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             hhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            432  11      112333444443  34567777777766543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.81  E-value=2.6e-07  Score=86.05  Aligned_cols=160  Identities=13%  Similarity=0.066  Sum_probs=85.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006012          270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAA----------------VITALSNSGRTIEAEAVFEELKESGLKP  333 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~~~~p  333 (664)
                      .....+...|++++|+..|++..+.. +.+...|..                +..++.+.|++++|...|++..+.... 
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-   86 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-   86 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
Confidence            34455678899999999998887643 223445555                566666666666666666666554322 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 006012          334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR--WESARIVLKEMEVSHAKPNSFIYSRI  411 (664)
Q Consensus       334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~~~~l  411 (664)
                      +...+..+..++...|++++|...|++..+..+. +..+|..+...|...|.  .+.+...++....  ..|....+...
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~  163 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD  163 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence            4555666666666666666666666666554322 45555555555544432  2233333333321  11222223333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 006012          412 LAGYRDRGEWQRTFQVLKEMKSS  434 (664)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~m~~~  434 (664)
                      ..++...|++++|...|++..+.
T Consensus       164 g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          164 GLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh
Confidence            34444455555555555555543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.80  E-value=1.7e-07  Score=87.27  Aligned_cols=139  Identities=15%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          479 NTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQS  558 (664)
Q Consensus       479 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  558 (664)
                      +.+..+|.+.|++++|+..|++.++.. +-+...+..+...+...|++++|...+++.++.... +..++..+..+|...
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence            447888999999999999999999886 567889999999999999999999999999986433 678888888888766


Q ss_pred             CChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          559 GRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNL--ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMK  634 (664)
Q Consensus       559 g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~  634 (664)
                      |+.+.+         .+...++...    .|+..  .+..+..++...|++++|+..|++.++  +.|+......+.+
T Consensus       136 ~~~~~~---------~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~  198 (208)
T 3urz_A          136 AEQEKK---------KLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHH---------HHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred             hHHHHH---------HHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence            543322         1222233332    34433  445566677778999999999999988  6788665544443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.79  E-value=2.8e-07  Score=89.19  Aligned_cols=188  Identities=11%  Similarity=0.028  Sum_probs=114.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-CHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---TATYAAVITALSNSGRTIEAEAVFEELKESGL-KP-RTK  336 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p-~~~  336 (664)
                      +.+...+-.+...+.+.|++++|++.|+.+.+.. +.+   ...+..+..++.+.|++++|...|++..+... .| ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            3455666677778888999999999999888753 223   66788888899999999999999999887532 12 245


Q ss_pred             HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 006012          337 AYNALLKGYVK--------MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY  408 (664)
Q Consensus       337 ~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~  408 (664)
                      .+..+..++..        .|++++|...|+++.+.... +......+.......+          ..        ...+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~----------~~--------~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRA----------KL--------ARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHH----------HH--------HHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHH----------HH--------HHHH
Confidence            66777778888        88899999999888875332 2222221110000000          00        0113


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHC
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGVE--PDTHFYNVMIDTFGKY----------NCLHHAMAAFDRMLSE  469 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~  469 (664)
                      ..+...|.+.|++++|+..|+.+.+....  .....+..+..+|...          |++++|...|+.+.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            34455556666666666666665543211  0233445555555443          5666666666666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.78  E-value=1.8e-06  Score=83.94  Aligned_cols=61  Identities=10%  Similarity=-0.044  Sum_probs=25.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          303 YAAVITALSNSGRTIEAEAVFEELKESGL-KPRTKAYNALLKGYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  363 (664)
                      +..+..++...|++++|++++.+.+..+. .-+...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            33444444444444444444444433221 01233334444444444444444444444433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.75  E-value=3.5e-06  Score=82.70  Aligned_cols=219  Identities=8%  Similarity=0.008  Sum_probs=124.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 006012          280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG--RTIEAEAVFEELKESGLKPRTKAYNALLKGY----VKM---GY  350 (664)
Q Consensus       280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~----~~~---g~  350 (664)
                      ..++|+++++.++..+ +-+...|+.-...+...|  ++++++++++.+...+.+ +..+|+.--..+    ...   ++
T Consensus        48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence            3457888887777654 334666777777777777  788888888887776443 445555444444    444   56


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWE--SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE------WQ  422 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~------~~  422 (664)
                      ++++.++++.+.+...+ +..+|+.-.-.+.+.|.++  ++++.++++.+.+ +-|...|+.....+...++      ++
T Consensus       126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence            77777777777766544 6777777666666777766  7777777777655 3455666655555555444      55


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH-AMAAFDRMLSEG--IEPDTITWNTLIDCHFKCGRYDRAEELFE  499 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~  499 (664)
                      ++++.++.+.... +-|...|+-+-..+.+.|.... +..+...+.+.+  -..+...+..+...|.+.|+.++|.++++
T Consensus       204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            5555555544433 3344445444444444443222 222333222211  01234444455555555555555555555


Q ss_pred             HHHH
Q 006012          500 EMQE  503 (664)
Q Consensus       500 ~m~~  503 (664)
                      .+.+
T Consensus       283 ~l~~  286 (306)
T 3dra_A          283 LLKS  286 (306)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.73  E-value=6.3e-07  Score=86.71  Aligned_cols=100  Identities=12%  Similarity=-0.034  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHH
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-P-DEHTY  373 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~  373 (664)
                      +...+..+...+.+.|++++|.+.|+++.+.... +   ...+..+..+|.+.|++++|...|++..+.... + ...++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            4555666666666666677777666666654321 2   455556666666666666666666666654221 1 13344


Q ss_pred             HHHHHHHHH--------cCCHHHHHHHHHHHHhc
Q 006012          374 SLLIDAYAN--------AGRWESARIVLKEMEVS  399 (664)
Q Consensus       374 ~~li~~~~~--------~g~~~~A~~l~~~m~~~  399 (664)
                      ..+..++..        .|++++|+..|++....
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            455555555        55555555555555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.71  E-value=9.5e-08  Score=106.21  Aligned_cols=173  Identities=8%  Similarity=-0.068  Sum_probs=110.7

Q ss_pred             HHcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012          381 ANAGRWESARIVLKEME--------VSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK  452 (664)
Q Consensus       381 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  452 (664)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...+.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            55667777777777665        222 3345566666677777777777777777766543 3456666777777777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          453 YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL  532 (664)
Q Consensus       453 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~  532 (664)
                      .|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            777777777777776653 2345666677777777777777 77777777665 44566777777777777777777777


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 006012          533 LGNMRAQGLLPN-VVTYTTLVDIYGQSGR  560 (664)
Q Consensus       533 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~  560 (664)
                      ++++.+.  .|+ ...+..+..++...|+
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            7776654  333 4555566666555444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.71  E-value=4.5e-07  Score=90.21  Aligned_cols=190  Identities=11%  Similarity=0.008  Sum_probs=122.1

Q ss_pred             HHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 006012          449 TFGKYNCLHHAMAAFDRMLSE----GIE-PDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFP-CTTTYNIMIN  518 (664)
Q Consensus       449 ~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~  518 (664)
                      .|...|++++|...|.+..+.    +-. .-..+|+.+...|.+.|++++|+..|++..+.    |-.. ...+++.+..
T Consensus        45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  124 (307)
T 2ifu_A           45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK  124 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555555555554432    100 01345667777888888888888888876543    2111 1356777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-H
Q 006012          519 LLGEQERWEDVKRLLGNMRAQGLLP-----NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-L  592 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~  592 (664)
                      .|.. |++++|.+.+++.++.....     ...++..+...|.+.|++++|+..++...    .++.   +.+..+.. .
T Consensus       125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~~---~~~~~~~~~~  196 (307)
T 2ifu_A          125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK----SMYK---EMENYPTCYK  196 (307)
T ss_dssp             HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHH---HTTCHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHH---HcCChhHHHH
Confidence            8888 99999999998887631111     14678889999999999999999876333    2222   22222222 2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD------VVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      .+..++.++...|++++|+..+++.. .  .|+      ......++.++ ..|+.+++.++++
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~  256 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCR  256 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHh
Confidence            67777788888899999999999998 3  332      23455566665 5677777766433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.69  E-value=1.8e-07  Score=103.88  Aligned_cols=174  Identities=12%  Similarity=-0.050  Sum_probs=129.3

Q ss_pred             HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012          276 AKAGDASKAMRFLGMAQ--------GVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK  347 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  347 (664)
                      ...|++++|++.++++.        +.. +.+...+..+...+.+.|++++|++.|++..+... -+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence            56789999999998887        332 44567888888888889999999999988887543 267788888888888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV  427 (664)
Q Consensus       348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  427 (664)
                      .|++++|.+.|++..+.... +...|..+...|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88889998888888876433 56778888888888888888 88888887764 34667778888888888888888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006012          428 LKEMKSSGVEPDTHFYNVMIDTFGKYNC  455 (664)
Q Consensus       428 ~~~m~~~g~~~~~~~~~~li~~~~~~g~  455 (664)
                      |++..+.. +.+...+..+..++...+.
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            88776543 2234556666666555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.69  E-value=0.00011  Score=77.84  Aligned_cols=341  Identities=7%  Similarity=-0.076  Sum_probs=172.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH-cCCC-CCHHHHHHHHHHHH----hcCCH
Q 006012          279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-TIEAEAVFEELKE-SGLK-PRTKAYNALLKGYV----KMGYL  351 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~-~~~~-p~~~~~~~li~~~~----~~g~~  351 (664)
                      |+++.+..+|++....  .|+...|...+....+.+. .+....+|+.... .|.. .+...|...+..+.    ..+++
T Consensus        28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            5666666666666653  3566666666666655553 2344555555544 2322 24455555555433    23455


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006012          352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYA-------------NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR  418 (664)
Q Consensus       352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~  418 (664)
                      +.+.++|++.+......-...|......-.             ..+.+..|..+++.+...-...+...|...+..-...
T Consensus       106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            666666666665321111112221111100             0112233344444333210011333454444432221


Q ss_pred             C--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006012          419 G--E-----WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY  491 (664)
Q Consensus       419 g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  491 (664)
                      +  -     .+.+..+|+.+.... +.+...|...+..+.+.|+.+.|..++++....  +.+...|.    .|....+.
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~  258 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE  258 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred             CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence            1  0     344566777766643 445677777777777788888888888888776  33333332    23222221


Q ss_pred             HHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          492 DRAEELFEEMQERG---------Y---FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG  559 (664)
Q Consensus       492 ~~A~~~~~~m~~~~---------~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  559 (664)
                      ++.   ++.+.+.-         .   ......|...+....+.+..+.|..+|.++ +. ...+..+|......-...|
T Consensus       259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~  333 (493)
T 2uy1_A          259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT  333 (493)
T ss_dssp             THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred             hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence            221   22222110         0   011244566666666677788888888888 32 1234444543332222223


Q ss_pred             -ChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          560 -RFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIR  638 (664)
Q Consensus       560 -~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~  638 (664)
                       +++.|..+|+           ...+. ..-+...|...++-..+.|+.+.|..+|+++.     .....|...++--..
T Consensus       334 ~d~~~ar~ife-----------~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~  396 (493)
T 2uy1_A          334 GSRATPYNIFS-----------SGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM  396 (493)
T ss_dssp             CCSHHHHHHHH-----------HHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHH-----------HHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence             4666666654           22221 11123456666777777888888888888762     245667777776666


Q ss_pred             cCCHhHHHHHHH
Q 006012          639 VDKFHKVFSSYL  650 (664)
Q Consensus       639 ~g~~~~A~~~~~  650 (664)
                      .|+.+.+.++++
T Consensus       397 ~G~~~~~r~v~~  408 (493)
T 2uy1_A          397 VGSMELFRELVD  408 (493)
T ss_dssp             HSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            788888877777

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.67  E-value=1.6e-05  Score=77.94  Aligned_cols=221  Identities=9%  Similarity=0.017  Sum_probs=172.0

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---C
Q 006012          314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG--YLKDAEFVVSEMERSGVLPDEHTYSLLIDAY----ANA---G  384 (664)
Q Consensus       314 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g  384 (664)
                      ...++|+++++.++..+.. +...|+.--..+...|  +++++++.++.+.....+ +..+|+.-...+    ...   +
T Consensus        47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence            3456899999999987543 6677888888888888  999999999999987655 667777665555    555   7


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 006012          385 RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ--RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC------L  456 (664)
Q Consensus       385 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~  456 (664)
                      ++++++.+++++.+.. +-+..+|+.-.-.+.+.|.++  ++++.++.+.+.. +-|...|+.-...+.+.+.      +
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            8999999999998875 568888888888888888888  8999999988865 5577788777666667666      8


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          457 HHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR-AEELFEEMQERG--YFPCTTTYNIMINLLGEQERWEDVKRLL  533 (664)
Q Consensus       457 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~  533 (664)
                      +++++.++.++... +-|...|+-+-..+.+.|+... +..+..++.+.+  -..+...+..+...+.+.|+.++|.+++
T Consensus       203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            88888888888765 4578888888888888887544 445666655432  1446778888888888889999999999


Q ss_pred             HHHHHC
Q 006012          534 GNMRAQ  539 (664)
Q Consensus       534 ~~m~~~  539 (664)
                      +.+.+.
T Consensus       282 ~~l~~~  287 (306)
T 3dra_A          282 DLLKSK  287 (306)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            888763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.66  E-value=3.5e-06  Score=78.52  Aligned_cols=175  Identities=10%  Similarity=0.030  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 006012          354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG----EWQRTFQVLK  429 (664)
Q Consensus       354 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~  429 (664)
                      |.+.|++..+.|   +...+..|...|...+++++|+..|++..+.+   +...+..+...|.. +    ++++|++.|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            334444444432   44444455555555555555555555554432   33444444444444 3    4555555555


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 006012          430 EMKSSGVEPDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFK----CGRYDRAEELFEE  500 (664)
Q Consensus       430 ~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~  500 (664)
                      +..+.|   +...+..|...|..    .+++++|...|++..+.|.. .....+..|...|..    .+++++|+..|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            554432   34444445555544    55555555555555544310 014455555555555    5556666666666


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006012          501 MQERGYFPCTTTYNIMINLLGEQ-E-----RWEDVKRLLGNMRAQG  540 (664)
Q Consensus       501 m~~~~~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~  540 (664)
                      ..+.+  .+...+..|...|... |     +.++|.+.+++..+.|
T Consensus       155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            55541  1233444444444332 2     5566666666555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.65  E-value=3.6e-06  Score=79.29  Aligned_cols=185  Identities=11%  Similarity=0.028  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH-HHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLS-P-KTATYAAVITALSNSGRTIEAEAVFEELKESGLKP-RT-KAYNA  340 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~-~~~~~  340 (664)
                      ...+-.+...+.+.|++++|+..|+.+.+.... + ....+..+..++.+.|++++|+..|+++.+..... .. ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344555667788889999999999998874311 1 13578888899999999999999999988754321 11 24444


Q ss_pred             HHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006012          341 LLKGYVK------------------MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK  402 (664)
Q Consensus       341 li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~  402 (664)
                      +..++..                  .|+.++|...|+++.+..+. +..++.+.....          .+...+.     
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~-----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA-----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH-----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH-----
Confidence            4444443                  45677777777777765322 222222111100          0000000     


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 006012          403 PNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEG  470 (664)
Q Consensus       403 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  470 (664)
                         .....+...|.+.|++++|+..|+.+.+..  |+    ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence               011345567788888888888888877652  32    2567778888888888888888888887764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.64  E-value=1.3e-07  Score=82.93  Aligned_cols=143  Identities=7%  Similarity=-0.125  Sum_probs=95.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK  352 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  352 (664)
                      .++...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++.++.... +..+|..+..+|.+.|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence            34445677888888887766432 123445667778888888888888888887775432 6777888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006012          353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIV-LKEMEVSHAKPNSFIYSRILAGYRDRG  419 (664)
Q Consensus       353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~~~~~~~~~~~~ll~~~~~~g  419 (664)
                      +|...|++..+.... +..+|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|
T Consensus        83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            888888887775433 567777777788888877665544 46665543 335555665555555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.64  E-value=3.2e-07  Score=82.81  Aligned_cols=160  Identities=9%  Similarity=-0.022  Sum_probs=98.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHh
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG-YVK  347 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~  347 (664)
                      ..+...+...|++++|...|+.+.+.. +.+...+..+...+.+.|++++|...|++..+..  |+...+..+... +..
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            344556777788888888887766532 3356777777888888888888888887766543  243333222211 112


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006012          348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRGEWQRTFQ  426 (664)
Q Consensus       348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~  426 (664)
                      .+...+|...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            22233456666666654322 46667777777777777777777777776654322 24466666667777777776666


Q ss_pred             HHHHHH
Q 006012          427 VLKEMK  432 (664)
Q Consensus       427 ~~~~m~  432 (664)
                      .|+...
T Consensus       166 ~y~~al  171 (176)
T 2r5s_A          166 KYRRQL  171 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.63  E-value=4.3e-06  Score=77.94  Aligned_cols=163  Identities=11%  Similarity=0.010  Sum_probs=85.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCCHHHHH
Q 006012          334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG----RWESARIVLKEMEVSHAKPNSFIYS  409 (664)
Q Consensus       334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~  409 (664)
                      +...+..|...|...+++++|.+.|++..+.|   +...+..|...|.. +    +.++|..+|++..+.+   +...+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            33444444444444555555555555544433   34444444444444 3    4555555555554432   344444


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012          410 RILAGYRD----RGEWQRTFQVLKEMKSSGVE-PDTHFYNVMIDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNT  480 (664)
Q Consensus       410 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~  480 (664)
                      .+...|..    .+++++|++.|++..+.|.. .....+..|...|..    .++.++|...|++..+.+  .+...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence            45555544    55566666666655554311 014555555555555    566677777776666541  23345555


Q ss_pred             HHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 006012          481 LIDCHFKC-G-----RYDRAEELFEEMQERG  505 (664)
Q Consensus       481 li~~~~~~-g-----~~~~A~~~~~~m~~~~  505 (664)
                      |..+|.+. |     ++++|+..|+...+.|
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            55566543 2     6777777777776665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.62  E-value=1.2e-06  Score=86.11  Aligned_cols=166  Identities=11%  Similarity=0.014  Sum_probs=115.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-H
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYN-A  340 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~  340 (664)
                      +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+.++++....  |+..... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            4445566667777888888888888888877653 3467778888888888888888888888776643  3433322 2


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC
Q 006012          341 LLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP-NSFIYSRILAGYRDRG  419 (664)
Q Consensus       341 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~ll~~~~~~g  419 (664)
                      ....+...++.++|...+++..+.... +...+..+...|...|++++|+..|+++.+..... +...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            222355666777777777777765432 67777788888888888888888888887654221 2556777777777777


Q ss_pred             CHHHHHHHHHHH
Q 006012          420 EWQRTFQVLKEM  431 (664)
Q Consensus       420 ~~~~a~~~~~~m  431 (664)
                      +.++|...+++.
T Consensus       270 ~~~~a~~~~r~a  281 (287)
T 3qou_A          270 TGDALASXYRRQ  281 (287)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            777777666654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.62  E-value=1.3e-06  Score=86.73  Aligned_cols=124  Identities=6%  Similarity=0.002  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 006012          441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE---P--DTITWNTLIDCHFKCGRYDRAEELFEEMQER----GYFPC-T  510 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~  510 (664)
                      .++..+...|.. |++++|+..|++..+....   +  ...+++.+...|.+.|++++|+..|++..+.    +..+. .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            345555666666 7777777777666542100   0  1356777778888888888888888887653    21111 2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHhcCChHHHHHH
Q 006012          511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLL-PN---VVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      ..+..+...+...|++++|...+++.. .... ++   ......++.++ ..|+.+.+.++
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            255566666777788888888888887 4211 01   12344455555 56676665553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.61  E-value=9.2e-07  Score=96.30  Aligned_cols=146  Identities=8%  Similarity=-0.060  Sum_probs=75.8

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012          251 KLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESG  330 (664)
Q Consensus       251 ~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  330 (664)
                      ..+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.|++..+..
T Consensus        10 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           10 LQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4444443322 2345555556666666666666666666655543 2345555566666666666666666666655543


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC
Q 006012          331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA---GRWESARIVLKEMEVSH  400 (664)
Q Consensus       331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~  400 (664)
                      . .+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+...   |+.++|.+.+++..+.+
T Consensus        88 p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           88 P-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            2 24555555666666666666666666665554322 445555555556555   66666666666555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.60  E-value=1.7e-07  Score=82.11  Aligned_cols=142  Identities=11%  Similarity=-0.037  Sum_probs=76.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006012          414 GYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDR  493 (664)
Q Consensus       414 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  493 (664)
                      .+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            3344455555555555544321 1122334445555666666666666666665543 2345566666666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL-LGNMRAQGLLPNVVTYTTLVDIYGQSG  559 (664)
Q Consensus       494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g  559 (664)
                      |+..|++..+.+ +-+...|..+...+.+.|+++++.+. +++.++.... ++.+|......+...|
T Consensus        84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            666666666654 33455666666666666666544433 4555553221 4555555555555444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.59  E-value=0.00015  Score=76.72  Aligned_cols=353  Identities=10%  Similarity=-0.002  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 006012          195 TYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECD-KI-ELDGQLLNDVI  272 (664)
Q Consensus       195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~-~~-~~d~~~~~~li  272 (664)
                      +|...+..+-. |+++.|..+|++....  .|+...|..-++-..+.+.. ......+|+..... |. ..+..+|...+
T Consensus        17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~-~~~i~~~fe~al~~vg~d~~s~~iW~~Yi   92 (493)
T 2uy1_A           17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK-KFKLYEVYEFTLGQFENYWDSYGLYKEYI   92 (493)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            34444443333 7788888888887764  46777777777666665532 12345666665542 32 33567777777


Q ss_pred             HHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHcCCCCCH
Q 006012          273 VGFA----KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN-------------SGRTIEAEAVFEELKESGLKPRT  335 (664)
Q Consensus       273 ~~~~----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~l~~~m~~~~~~p~~  335 (664)
                      ..+.    ..|+.+.+.++|++++......-...|......-..             .+.+..|..+++.+...-...+.
T Consensus        93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~  172 (493)
T 2uy1_A           93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV  172 (493)
T ss_dssp             HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred             HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence            6543    346677888888888763211112223322221111             12233445555544431001134


Q ss_pred             HHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 006012          336 KAYNALLKGYVKMG--Y-----LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIY  408 (664)
Q Consensus       336 ~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~  408 (664)
                      ..|...+..-...+  -     .+.+..+|+++.... ..+...|...+..+.+.|+.++|..+|++....  +.+...|
T Consensus       173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~  249 (493)
T 2uy1_A          173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS  249 (493)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred             HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence            45655555433221  1     345677888888753 336788888888889999999999999999887  3343333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC---C------CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSS---G------VEP---DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTI  476 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~---g------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  476 (664)
                      ..    |....+.++.   ++.+.+.   .      ..+   ....|...+....+.+.++.|..+|+.. +.. ..+..
T Consensus       250 ~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~  320 (493)
T 2uy1_A          250 LY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH  320 (493)
T ss_dssp             HH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred             HH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence            32    2221111111   2222211   0      001   1245666666666778899999999998 322 23444


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          477 TWNTLIDCHFKC-GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY  555 (664)
Q Consensus       477 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  555 (664)
                      .|......-... ++.+.|..+|+...+.- +-+...+...++...+.|+.+.|..+|+.+.     .....|...++.=
T Consensus       321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE  394 (493)
T 2uy1_A          321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYE  394 (493)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            554322222223 36999999999998863 3345556667777788999999999999873     2577888888877


Q ss_pred             HhcCChHHHHHHHh
Q 006012          556 GQSGRFDDAIECLE  569 (664)
Q Consensus       556 ~~~g~~~~A~~~~~  569 (664)
                      ...|+.+.+..+++
T Consensus       395 ~~~G~~~~~r~v~~  408 (493)
T 2uy1_A          395 FMVGSMELFRELVD  408 (493)
T ss_dssp             HHHSCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHH
Confidence            88899988887765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.59  E-value=6.2e-06  Score=77.63  Aligned_cols=186  Identities=10%  Similarity=0.040  Sum_probs=103.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 006012          334 RTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVL-P-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS--FIYS  409 (664)
Q Consensus       334 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~--~~~~  409 (664)
                      +...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+.......  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3455666777788888999999999888875332 1 1356777888888889999999998888776432221  2444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HH------------
Q 006012          410 RILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TI------------  476 (664)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~------------  476 (664)
                      .+..++...+..     .+            ..+..+...+...|+.++|...|+++++..  |+ ..            
T Consensus        83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence            444444432100     00            000111111222334444444444444321  11 11            


Q ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          477 -----TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC---TTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       477 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                           ....+...|.+.|++++|+..|+++++.. +.+   ...+..+..++.+.|+.++|.+.++.+...
T Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence                 11234455667777777777777776653 111   134666667777777777777777766665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.58  E-value=1.3e-06  Score=85.75  Aligned_cols=162  Identities=11%  Similarity=0.004  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 006012          404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNT-LI  482 (664)
Q Consensus       404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li  482 (664)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++....  |+...... ..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            33445555555666666666666666655543 3355666666666677777777777776665432  34332222 22


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 006012          483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTTLVDIYGQSGRF  561 (664)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~  561 (664)
                      ..+.+.++.++|...+++..... +.+...+..+...+...|++++|.+.+.++.+..... +...+..++..|...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            23556667777777777777765 5567777777778888888888888888877753221 256777788888888888


Q ss_pred             HHHHHHHh
Q 006012          562 DDAIECLE  569 (664)
Q Consensus       562 ~~A~~~~~  569 (664)
                      ++|...++
T Consensus       272 ~~a~~~~r  279 (287)
T 3qou_A          272 DALASXYR  279 (287)
T ss_dssp             CHHHHHHH
T ss_pred             CcHHHHHH
Confidence            87776654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.58  E-value=1.2e-06  Score=95.33  Aligned_cols=152  Identities=10%  Similarity=-0.010  Sum_probs=72.2

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012          314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVL  393 (664)
Q Consensus       314 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~  393 (664)
                      |++++|.+.|++..+... -+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.+
T Consensus         3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            555666666666554322 24555666666666666666666666666554322 4555555666666666666666666


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 006012          394 KEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY---NCLHHAMAAFDRMLSE  469 (664)
Q Consensus       394 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~  469 (664)
                      ++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+...   |+.++|.+.+++..+.
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            6655443 2344455555555555555555555555554432 22344444555555555   5555555555555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.56  E-value=7.1e-07  Score=80.54  Aligned_cols=63  Identities=10%  Similarity=0.082  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEP-DTITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                      +...+..+...+...|++++|...|+++.+....+ +...+..+...|...|+.++|...|++.
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            34444555555555555555555555555432211 1334455555555555555555555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.53  E-value=1.7e-05  Score=78.06  Aligned_cols=167  Identities=12%  Similarity=0.035  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--
Q 006012          476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT------TTYNIMINLLGEQERWEDVKRLLGNMRAQGL---LPN--  544 (664)
Q Consensus       476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~p~--  544 (664)
                      ..+...+..+...|++++|.+.+++..+.... ..      ..+..+...+...|++++|...+.+..+...   .+.  
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34555677788899999999999888776422 22      2234455667788999999999999886421   122  


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 006012          545 VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP--SNLALNSLINAFGEDQRDAEAFAVLQYMKEN--  620 (664)
Q Consensus       545 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--  620 (664)
                      ..+++.+...|...|++++|+..++.    |+++++.   .+-.+  ...+|..+...|...|++++|+.++++.++.  
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~k----al~~~~~---~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQ----ILKQLEA---LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHH---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHh---cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45889999999999999999998763    3333322   11111  1257889999999999999999999998762  


Q ss_pred             --CCCC-CHHHHHHHHHHHHhcCCHhHH-HHHHH
Q 006012          621 --GLKP-DVVTYTTLMKALIRVDKFHKV-FSSYL  650 (664)
Q Consensus       621 --g~~p-~~~~~~~l~~a~~~~g~~~~A-~~~~~  650 (664)
                        +... -..+|..++.+|.+.|++++| ...|+
T Consensus       228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~  261 (293)
T 2qfc_A          228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK  261 (293)
T ss_dssp             HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence              1111 167889999999999999999 66666

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.51  E-value=4.3e-05  Score=75.08  Aligned_cols=167  Identities=9%  Similarity=-0.033  Sum_probs=118.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006012          446 MIDTFGKYNCLHHAMAAFDRMLSEGI-EPDT----ITWNTLIDCHFKCGRYDRAEELFEEMQERGYF-PC----TTTYNI  515 (664)
Q Consensus       446 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~  515 (664)
                      .+..+...|++++|..+++...+... .++.    ..+..+...+...|++++|+..|++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35667778888888888888876421 1221    12334666667778899999999988874211 22    336888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012          516 MINLLGEQERWEDVKRLLGNMRAQ-----GLLP-NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP  589 (664)
Q Consensus       516 ll~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p  589 (664)
                      +...|...|++++|...++++.+.     +..+ ...++..+...|.+.|++++|++.++.    |+++.   ...+..+
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~----al~~~---~~~~~~~  233 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK----AIEIS---CRINSMA  233 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHH---HHTTBCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHH---HHcCcHH
Confidence            888999999999999999888741     1111 234788899999999999999998763    33332   2233333


Q ss_pred             C-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006012          590 S-NLALNSLINAFGEDQ-RDAEAFAVLQYMKE  619 (664)
Q Consensus       590 ~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  619 (664)
                      . ...|..+..+|.+.| .+++|++.++++.+
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            3 568899999999999 46999999998874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.48  E-value=1e-05  Score=75.15  Aligned_cols=129  Identities=16%  Similarity=-0.016  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      .+..+...+...|++++|++.|++..    .|+...|..+...+.+.|++++|.+.|++..+... .+...+..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence            34556677888999999999998774    56888999999999999999999999999887643 36788889999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012          347 KMGYLKDAEFVVSEMERSGVLP---------------DEHTYSLLIDAYANAGRWESARIVLKEMEVSH  400 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  400 (664)
                      ..|++++|.+.+++..+.....               ....+..+...|.+.|++++|...|++..+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            9999999999999988753221               12678888889999999999999999988764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.48  E-value=5.5e-05  Score=75.04  Aligned_cols=169  Identities=10%  Similarity=0.010  Sum_probs=99.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 006012          279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSG-RTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM-G-YLKDAE  355 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~  355 (664)
                      +..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.+. + +.++++
T Consensus        68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence            44456777777776653 334556676666666666 477777777777765443 566666665555555 5 667777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 006012          356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWE--------SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE-------  420 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------  420 (664)
                      ++++.+.+...+ |..+|+.-.-.+.+.|.++        ++++.++++.+.. +-|...|+.....+.+.++       
T Consensus       146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence            777777765443 6666665555554444444        6666666666554 3455666666555555554       


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006012          421 WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGK  452 (664)
Q Consensus       421 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  452 (664)
                      ++++++.++++.... +-|...|+-+-..+.+
T Consensus       224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~  254 (349)
T 3q7a_A          224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKH  254 (349)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            455555555555432 3344555444333333

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.45  E-value=2e-05  Score=77.48  Aligned_cols=161  Identities=12%  Similarity=-0.012  Sum_probs=92.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGVGL-SPKT----ATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR----TKAYNA  340 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~  340 (664)
                      .+..+...|++++|.+.+++..+... .++.    ..+..+...+...|++++|+..|++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35667777888888888877765321 1221    12334555666667777777777777663221 12    235677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 006012          341 LLKGYVKMGYLKDAEFVVSEMER----S-GVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVS----HAKPN-SFIYS  409 (664)
Q Consensus       341 li~~~~~~g~~~~a~~~~~~m~~----~-g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~~-~~~~~  409 (664)
                      +...|...|++++|...++++.+    . +..+ ...++..+...|.+.|++++|+..+++..+.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            77777777777777777777663    1 1111 1235566666677777777777666665432    11111 34555


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHH
Q 006012          410 RILAGYRDRG-EWQRTFQVLKEM  431 (664)
Q Consensus       410 ~ll~~~~~~g-~~~~a~~~~~~m  431 (664)
                      .+..+|.+.| .+++|.+.+++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHH
Confidence            5555566666 345555555554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.43  E-value=9.9e-06  Score=71.58  Aligned_cols=129  Identities=14%  Similarity=0.030  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      ..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|.+.|++..+... .+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            445666777778888888888888777653 34577777788888888888888888888776532 3566777777778


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 006012          346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSL--LIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      ...|++++|...+++..+.... +...+..  ++..+.+.|++++|+..+....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            8888888888888777765332 4444433  3333666677777777766553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.41  E-value=1.4e-05  Score=74.10  Aligned_cols=121  Identities=12%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012          413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD  492 (664)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  492 (664)
                      ..+...|++++|...|++..    .|+...+..+...|.+.|++++|...+++..+.. +.+...|..+..+|.+.|+++
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence            34444444444444444432    3344444445555555555555555555544432 223445555555555555555


Q ss_pred             HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          493 RAEELFEEMQERGYFPC----------------TTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       493 ~A~~~~~~m~~~~~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      +|++.|++..+.. +.+                ...+..+..++.+.|++++|.+.+++..+.
T Consensus        89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            5555555555432 111                144555555555666666666666655553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.40  E-value=9.3e-06  Score=68.47  Aligned_cols=97  Identities=16%  Similarity=0.035  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      ..+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.+. .+...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence            345555666666677777777766666543 33566666666666666666666666666665432 2455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 006012          346 VKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~  364 (664)
                      ...|++++|.+.|++..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            6666666666666666654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.39  E-value=0.00019  Score=71.12  Aligned_cols=223  Identities=9%  Similarity=0.031  Sum_probs=155.0

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHH
Q 006012          311 SNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-G-RWE  387 (664)
Q Consensus       311 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~  387 (664)
                      .+.+..++|++++++++..+.. +..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.+. + +.+
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence            3345567899999999987544 6777888877888888 599999999999988765 788898888777776 7 889


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----
Q 006012          388 SARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ--------RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNC----  455 (664)
Q Consensus       388 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----  455 (664)
                      +++++++++.+.. +-|..+|+.....+.+.+.++        ++++.++++.+.. +-|...|+.....+.+.+.    
T Consensus       143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence            9999999998765 457778876666665555554        7888888877764 4577777777777777665    


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CC
Q 006012          456 ---LHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRY--------------------DRAEELFEEMQERG-----YF  507 (664)
Q Consensus       456 ---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~  507 (664)
                         ++++++.+++.+... +-|...|+-+-..+.+.|+.                    .+..+...++...+     -.
T Consensus       221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence               677777777777654 45677777766666666653                    22222222222211     13


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       508 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      ++...+..++..|...|+.++|.++++.+.+
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            5566666777777777777777777777654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.38  E-value=1.6e-05  Score=66.10  Aligned_cols=113  Identities=16%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      ...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence            3455566666666677777777666665542 33455666666666666666666666666655432 245555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY  380 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  380 (664)
                      +...|++++|...++++.+.... +...+..+...+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  121 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK  121 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            66666666666666665554321 334444443333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.36  E-value=8.4e-05  Score=72.98  Aligned_cols=171  Identities=8%  Similarity=-0.055  Sum_probs=118.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDT-----ITWNTLIDCHFKCGRYDRAEELFEEMQERGY---FPC--TT  511 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~  511 (664)
                      .+...+..+...|++++|.+.+....+.......     ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3444556667777777777777776654322111     2233455567778899999999988875321   122  45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHC
Q 006012          512 TYNIMINLLGEQERWEDVKRLLGNMRAQ-GLLPN-----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTD  585 (664)
Q Consensus       512 t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~  585 (664)
                      +|+.+...|...|++++|...+.++.+. ...|+     ..++..+...|.+.|++++|++.++.    |+++..   ..
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k----al~~~~---~~  229 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK----AIEISC---RI  229 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHH---HT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH----HHHHHH---hc
Confidence            7888899999999999999999988732 01122     25888999999999999999998764    333332   22


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006012          586 GLKPS-NLALNSLINAFGEDQRDAEA-FAVLQYMKE  619 (664)
Q Consensus       586 g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~~  619 (664)
                      +.... ..+|..+..+|.+.|++++| ...+++...
T Consensus       230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            22222 46789999999999999999 777887764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.36  E-value=1.8e-05  Score=65.82  Aligned_cols=113  Identities=14%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          441 HFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLL  520 (664)
Q Consensus       441 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~  520 (664)
                      ..+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|..+|+++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            444555555555566666666665555432 2345555666666666666666666666665543 34455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYG  556 (664)
Q Consensus       521 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  556 (664)
                      ...|++++|...++++.+... .+...+..+...+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~  122 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            666666666666666655432 13444444444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.34  E-value=2e-05  Score=69.53  Aligned_cols=62  Identities=10%  Similarity=-0.080  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      ..+..+...|...|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.++++.+
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVK  109 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            333333444444444444444444443332 22333344444444444444444444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.33  E-value=1.3e-05  Score=78.35  Aligned_cols=190  Identities=7%  Similarity=-0.037  Sum_probs=128.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN  518 (664)
Q Consensus       439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  518 (664)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            56677888888999999999999999988764 3478888999999999999999999999998875 567788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLI  598 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  598 (664)
                      ++...|++++|...+.+..+.+.. +...+...+....+.   .++            ..+..........+......+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~i~~~l~  144 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKK------------KRWNSIEERRIHQESELHSYLT  144 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHH------------HHHHHHHHTCCCCCCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHH------------HHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999999988764211 000111111111111   000            0122233333444444444443


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHhHHHHHHH
Q 006012          599 NAFGEDQRDAEAFAVLQYMKENGLKPDV-VTYTTLMKALIRV-DKFHKVFSSYL  650 (664)
Q Consensus       599 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~a~~~~-g~~~~A~~~~~  650 (664)
                      ..+  .|++++|++.+++..+  ..|+. .....+...+.+. +++++|.++|+
T Consensus       145 ~l~--~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~  194 (281)
T 2c2l_A          145 RLI--AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFS  194 (281)
T ss_dssp             HHH--HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            332  6899999999888876  45654 3444444445454 66778888876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.32  E-value=1.6e-05  Score=66.91  Aligned_cols=96  Identities=13%  Similarity=0.102  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      .+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.+ +.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            34445555566666666666666655543 2345566666666666666666666666666554 445556666666666


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 006012          522 EQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~~  539 (664)
                      ..|++++|.+.|++.++.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            666666666666666654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.31  E-value=8.9e-06  Score=74.73  Aligned_cols=160  Identities=13%  Similarity=0.030  Sum_probs=94.7

Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 006012          452 KYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQER----GY-FPCTTTYNIMINLLGEQERW  526 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~g~~  526 (664)
                      ..|++++|.++++.+... .......+..+...|...|++++|...+++..+.    +. ......+..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            456666666644444321 1224556666667777777777777777766541    11 11234566666777777777


Q ss_pred             HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 006012          527 EDVKRLLGNMRAQ----GLLP--NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLIN  599 (664)
Q Consensus       527 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~  599 (664)
                      ++|.+.+.+..+.    +-.+  ....+..+...+...|++++|...++..    +.+..   ..+-.. -..++..+..
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~~~---~~~~~~~~~~~~~~la~  155 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS----LVYAQ---QADDQVAIACAFRGLGD  155 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHHHH---HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----HHHHH---hccchHHHHHHHHHHHH
Confidence            7777777766553    1111  1345677777888888888888776532    22221   111111 1224677788


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 006012          600 AFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       600 ~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ++...|++++|.+.+++..+
T Consensus       156 ~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          156 LAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHH
Confidence            88888888888888887765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.30  E-value=1.4e-05  Score=67.38  Aligned_cols=119  Identities=12%  Similarity=-0.063  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNAL  341 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l  341 (664)
                      +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|++..+... .+...+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence            3445566667777777777777777777776643 33566677777777777777777777777666432 255666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012          342 LKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA  383 (664)
Q Consensus       342 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  383 (664)
                      ..++.+.|++++|.+.+++..+.... +...+..+...+.+.
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence            66777777777777777766654321 334444455444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.30  E-value=1.8e-05  Score=66.46  Aligned_cols=118  Identities=16%  Similarity=0.018  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      ...+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence            4455666666777777777777777766543 33566666677777777777777777777665432 245566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006012          345 YVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR  385 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  385 (664)
                      +...|++++|...+++..+.... +...+..+...+.+.|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            66777777777777666654322 45555555555555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.29  E-value=2.1e-05  Score=65.95  Aligned_cols=119  Identities=10%  Similarity=-0.026  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL  519 (664)
Q Consensus       440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~  519 (664)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            3445555556666666666666666665543 2345666666666777777777777777766654 3446666666777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006012          520 LGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF  561 (664)
Q Consensus       520 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  561 (664)
                      +...|++++|.+.+++..+... .+...+..+..++.+.|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence            7777777777777777666532 2455666666666666553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.26  E-value=3.4e-06  Score=82.54  Aligned_cols=97  Identities=14%  Similarity=-0.047  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      ...+..+...+.+.|++++|+..|+.+.+.. +.+...|..+..++.+.|++++|.+.+++..+... .+...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            3445555666666666666666666665542 22555666666666666666666666666655422 245555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 006012          345 YVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~  363 (664)
                      +...|++++|...+++..+
T Consensus        82 ~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.25  E-value=9.5e-06  Score=74.56  Aligned_cols=156  Identities=13%  Similarity=0.000  Sum_probs=90.4

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCC
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES----GLK-PRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~~~~li~~~~~~g~  350 (664)
                      ...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+.    +.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            356778888775554443 11224567777777788888888888887776551    111 123556677777777788


Q ss_pred             HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcC
Q 006012          351 LKDAEFVVSEMERS----GVLP--DEHTYSLLIDAYANAGRWESARIVLKEMEVSHA-KPN----SFIYSRILAGYRDRG  419 (664)
Q Consensus       351 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~----~~~~~~ll~~~~~~g  419 (664)
                      +++|...+++..+.    +-.+  ...++..+...+...|++++|...+++...... ..+    ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            87777777766542    1111  134466667777777777777777776643210 011    123445555666666


Q ss_pred             CHHHHHHHHHHHH
Q 006012          420 EWQRTFQVLKEMK  432 (664)
Q Consensus       420 ~~~~a~~~~~~m~  432 (664)
                      ++++|.+.+++..
T Consensus       162 ~~~~A~~~~~~al  174 (203)
T 3gw4_A          162 NLLEAQQHWLRAR  174 (203)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6666666665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.23  E-value=2.4e-05  Score=65.97  Aligned_cols=93  Identities=9%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC  488 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  488 (664)
                      ..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~   97 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAM   97 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHH
Confidence            333333333334444443333333321 1233333333444444444444444444433322 12333344444444444


Q ss_pred             CCHHHHHHHHHHHHH
Q 006012          489 GRYDRAEELFEEMQE  503 (664)
Q Consensus       489 g~~~~A~~~~~~m~~  503 (664)
                      |++++|.+.|++..+
T Consensus        98 ~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           98 KDYTKAMDVYQKALD  112 (133)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            444444444444433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.23  E-value=6.5e-06  Score=71.83  Aligned_cols=95  Identities=15%  Similarity=-0.051  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA  381 (664)
Q Consensus       302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  381 (664)
                      .+..+...+.+.|++++|.+.|++..+... -+...|..+..+|...|++++|...|++..+..+. +...|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence            444444455555555555555555544322 14444555555555555555555555555443322 3444445555555


Q ss_pred             HcCCHHHHHHHHHHHHh
Q 006012          382 NAGRWESARIVLKEMEV  398 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~  398 (664)
                      +.|++++|...|++..+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.21  E-value=3e-05  Score=77.91  Aligned_cols=131  Identities=8%  Similarity=-0.083  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK--------------TATYAAVITALSNSGRTIEAEAVFEELKESG  330 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  330 (664)
                      ...+..+...|.+.|++++|++.|++..+......              ...|..+..++.+.|++++|+..|++.++..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45667778888899999999999998887541111              4778888888888888888888888887754


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 006012          331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESA-RIVLKEME  397 (664)
Q Consensus       331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~  397 (664)
                      . .+...|..+..+|...|++++|...|++..+.... +..++..+...+.+.|+.++| ..+++.|.
T Consensus       227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 36777778888888888888888888887775433 566777777777777777777 44555553

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.19  E-value=6.3e-05  Score=72.12  Aligned_cols=129  Identities=12%  Similarity=-0.012  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 006012          374 SLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD--THFYNVMIDTFG  451 (664)
Q Consensus       374 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~  451 (664)
                      -.+...+...|++++|.++|+.+...+  |+......+...+.+.++|++|+..|+...... .|.  ...+..+..++.
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence            345556666677777777776665432  333244445556666677777777666443321 110  234555666666


Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012          452 KYNCLHHAMAAFDRMLSEGIEPD--TITWNTLIDCHFKCGRYDRAEELFEEMQERG  505 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  505 (664)
                      ..|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...+
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            66667777666666653222132  2244455556666677777777777666653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.19  E-value=1.9e-05  Score=68.80  Aligned_cols=103  Identities=9%  Similarity=-0.045  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      +...+..+...+.+.|++++|++.|+++.... +.+...|..+..++.+.|++++|++.|++..+.... +...|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            45577788889999999999999999999865 457889999999999999999999999999986543 6788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDE  370 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~  370 (664)
                      +|.+.|++++|...|++..+..  |+.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l~--~~~  137 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQHS--NDE  137 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence            9999999999999999998863  454

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.18  E-value=0.0011  Score=65.49  Aligned_cols=137  Identities=7%  Similarity=-0.038  Sum_probs=80.4

Q ss_pred             HcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          277 KAGDAS-KAMRFLGMAQGVGLSPKTATYAAVITALSNSGR----------TIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       277 ~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      +.|.++ +|+++++.+...+ +-+...|+.--..+...++          +++++.+++.+.....+ +..+|+.-...+
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            344443 6777777777654 3345556655444444333          45666666666665433 566666666666


Q ss_pred             HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012          346 VKMG--YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR-WESARIVLKEMEVSHAKPNSFIYSRILAGYRD  417 (664)
Q Consensus       346 ~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~  417 (664)
                      .+.+  .++++..+++.+.+.... |..+|+.-.-.+...|. ++++++.++++.+.. +-|...|+.....+..
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence            6666  366777777777665443 66666666666666666 466777777666654 3455555555444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.16  E-value=1.2e-05  Score=70.06  Aligned_cols=96  Identities=15%  Similarity=-0.004  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          301 ATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAY  380 (664)
Q Consensus       301 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  380 (664)
                      ..+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...+++..+.... +...+..+..+|
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~   99 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence            3444445555555555555555555544322 14444555555555555555555555555443221 344445555555


Q ss_pred             HHcCCHHHHHHHHHHHHh
Q 006012          381 ANAGRWESARIVLKEMEV  398 (664)
Q Consensus       381 ~~~g~~~~A~~l~~~m~~  398 (664)
                      ...|++++|...|++..+
T Consensus       100 ~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555555443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.16  E-value=4e-05  Score=76.96  Aligned_cols=95  Identities=13%  Similarity=-0.036  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI  554 (664)
Q Consensus       475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  554 (664)
                      ...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|...++++++.... +...+..+..+
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~  273 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            4677888888888888888888888888875 557788888888888888999998888888876432 57788888888


Q ss_pred             HHhcCChHHHHH-HHhhh
Q 006012          555 YGQSGRFDDAIE-CLEGL  571 (664)
Q Consensus       555 ~~~~g~~~~A~~-~~~~~  571 (664)
                      +.+.|+.++|.+ .+.++
T Consensus       274 ~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888743 44433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.16  E-value=9.8e-06  Score=72.84  Aligned_cols=120  Identities=8%  Similarity=0.091  Sum_probs=76.6

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 006012          417 DRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC-HFKCGRY--DR  493 (664)
Q Consensus       417 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~  493 (664)
                      ..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            4455666666666655443 3455666666666777777777777777666543 2355566666666 6677776  77


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          494 AEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       494 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      |...|+++.+.. +.+...+..+...+...|++++|...+.++.+.
T Consensus       100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            777777777664 445666777777777777777777777777765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.16  E-value=2.7e-05  Score=74.63  Aligned_cols=199  Identities=10%  Similarity=0.006  Sum_probs=144.2

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHH------------cCCC-----
Q 006012          277 KAGDASKAMRFLGMAQGVGLSPKTATYAAV-------ITALSNSGRTIEAEAVFEELKE------------SGLK-----  332 (664)
Q Consensus       277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~------------~~~~-----  332 (664)
                      ..++...|.+.|.++.... +-....|..+       ...+.+.++..+++..+..-..            .|.-     
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            5789999999999998864 3457788888       5777777777777666665544            1210     


Q ss_pred             ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHH
Q 006012          333 ---PRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKP--NSFI  407 (664)
Q Consensus       333 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~  407 (664)
                         --....-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|  ....
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a  173 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA  173 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence               012344556778889999999999999988754  444366677778899999999999998554321 11  1346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          408 YSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD--THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTL  481 (664)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  481 (664)
                      +..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....  |+...+..|
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL  247 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence            77888999999999999999999875433253  3466677778899999999999999998764  444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.15  E-value=1.7e-05  Score=71.29  Aligned_cols=120  Identities=10%  Similarity=0.008  Sum_probs=83.4

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI-YGQSGRF--D  562 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~  562 (664)
                      ...|++++|...+++..+.. +.+...|..+...+...|++++|...++++.+... .+...+..+..+ |...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence            34677778888887777665 45677777888888888888888888888777532 256677777777 7778887  7


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          563 DAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKEN  620 (664)
Q Consensus       563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  620 (664)
                      +|+..++           +....  .| +...|..+...|...|++++|+..++++.+.
T Consensus        99 ~A~~~~~-----------~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMID-----------KALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHH-----------HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-----------HHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            7777654           22221  23 4567778888888888888888888888873

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.12  E-value=5.7e-05  Score=63.33  Aligned_cols=97  Identities=12%  Similarity=-0.027  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      ..+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++..+... .+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence            345556666777777777777777766643 34566677777777777777777777777766532 2456666677777


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 006012          346 VKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~  364 (664)
                      ...|++++|...+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            7777777777777766653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.10  E-value=0.00013  Score=59.76  Aligned_cols=97  Identities=12%  Similarity=0.036  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      ..+..+...+...|++++|.+.|+...... +.+...+..+...+.+.|++++|...+++..+... .+...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            345556666667777777777777666543 33556666666666667777777777766665432 2455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 006012          346 VKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~  364 (664)
                      ...|++++|.+.++...+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            6666666666666666654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=0.00029  Score=73.29  Aligned_cols=117  Identities=9%  Similarity=0.014  Sum_probs=56.4

Q ss_pred             ccCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C---CCCCHHHHHHHHHHHH
Q 006012          452 KYNCLHHAMAAFDRMLS----EGIEPD-TITWNTLIDCHFKCGRYDRAEELFEEMQER--G---YFPCTTTYNIMINLLG  521 (664)
Q Consensus       452 ~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~p~~~t~~~ll~~~~  521 (664)
                      ..|+.+.|..++.....    .+..+. ..++..+...|...|++++|..+++++...  +   -......+..+++.|.
T Consensus       107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
T 4b4t_Q          107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH  186 (434)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            34455555555544432    111111 334555555666666666666666555432  1   0111334555556666


Q ss_pred             hcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 006012          522 EQERWEDVKRLLGNMRAQ--GLLPN----VVTYTTLVDIYGQSGRFDDAIECL  568 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~  568 (664)
                      ..|++++|..++++....  .+..+    ...+..++..+...|++++|...+
T Consensus       187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            666666666666555432  11111    233444455555666666665554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.07  E-value=0.0024  Score=62.99  Aligned_cols=190  Identities=8%  Similarity=-0.035  Sum_probs=124.0

Q ss_pred             HhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          311 SNSGRT-IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY----------LKDAEFVVSEMERSGVLPDEHTYSLLIDA  379 (664)
Q Consensus       311 ~~~g~~-~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~  379 (664)
                      .+.|.+ ++|+++++.++..+.. +..+|+.--..+...+.          ++++..+++.+.....+ +..+|+.-...
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            345554 4789999998876433 45556544444333332          57788888888876554 77888877777


Q ss_pred             HHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 006012          380 YANAG--RWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE-WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKY---  453 (664)
Q Consensus       380 ~~~~g--~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---  453 (664)
                      +.+.+  .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++++.++.+.+.. +-|...|+.....+.+.   
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence            77777  4788888888888765 4577788777777777777 578888888887764 45666666655554443   


Q ss_pred             -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC
Q 006012          454 -----------NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC-----------GRYDRAEELFEEMQERG  505 (664)
Q Consensus       454 -----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~  505 (664)
                                 +.++++++.+....... +-|...|+-+--.+.+.           +.++++++.++++.+..
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~  268 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE  268 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence                       34566666666666544 34566666444444433           34566666666666543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.06  E-value=0.00017  Score=59.02  Aligned_cols=96  Identities=13%  Similarity=0.051  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      .+..+...+...|++++|...++...+.. +.+...+..+...|.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            44445555555566666666666555432 2345555566666666666666666666665553 334555666666666


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 006012          522 EQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~~  539 (664)
                      ..|++++|.+.+.+..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHc
Confidence            666666666666666654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.06  E-value=3e-05  Score=67.41  Aligned_cols=98  Identities=11%  Similarity=-0.031  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL  519 (664)
Q Consensus       440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~  519 (664)
                      ...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++....+ +.+...+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            3445555666666777777777777666543 3356666666677777777777777777776654 3455666666777


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 006012          520 LGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       520 ~~~~g~~~~a~~~~~~m~~~  539 (664)
                      +...|++++|.+.+++.++.
T Consensus        99 ~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777776654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.05  E-value=7.1e-05  Score=63.01  Aligned_cols=110  Identities=14%  Similarity=0.088  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC
Q 006012          511 TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS  590 (664)
Q Consensus       511 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~  590 (664)
                      ..+..+...+.+.|++++|++.|.+.++.... +...|..+..+|.+.|++++|++.++..++    +-   ...  .++
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~----~~---~~~--~~~   78 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE----VG---RET--RAD   78 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HH---HHT--TCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH----hC---ccc--chh
Confidence            34556667777777777777777777765322 566777777778888888877776553222    11   111  111


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          591 ----NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTL  632 (664)
Q Consensus       591 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  632 (664)
                          ..+|..+..++...|++++|++.|++.++  ..||..+...|
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l  122 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence                23677888999999999999999999988  56777665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.04  E-value=8.9e-05  Score=62.41  Aligned_cols=97  Identities=16%  Similarity=0.033  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPR----TKAYN  339 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~----~~~~~  339 (664)
                      ..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++.++...  .++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            345566777777777777777777777653 33566777777777777777777777777665311  111    13455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~  363 (664)
                      .+..++...|++++|.+.|++..+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555666666666666666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.04  E-value=9.3e-06  Score=74.64  Aligned_cols=86  Identities=9%  Similarity=-0.014  Sum_probs=35.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006012          443 YNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE  522 (664)
Q Consensus       443 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~  522 (664)
                      +..+..+|.+.|++++|+..++...+.. +.+...+..+..+|...|++++|++.|++..+.. +-+...+..+...+..
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence            3333444444444444444444444332 2233444444444444455555555544444432 2233444444444444


Q ss_pred             cCCHHHHH
Q 006012          523 QERWEDVK  530 (664)
Q Consensus       523 ~g~~~~a~  530 (664)
                      .++.+++.
T Consensus       169 ~~~~~~~~  176 (198)
T 2fbn_A          169 LKEARKKD  176 (198)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            44443333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.04  E-value=9.4e-05  Score=61.96  Aligned_cols=95  Identities=11%  Similarity=0.024  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLG  521 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  521 (664)
                      .+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            34444445555555555555555555433 2345555555566666666666666666655554 334555555666666


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 006012          522 EQERWEDVKRLLGNMRA  538 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~  538 (664)
                      ..|++++|.+.+++..+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            66666666666665554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.99  E-value=0.00012  Score=67.03  Aligned_cols=121  Identities=10%  Similarity=-0.044  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----------------ATYAAVITALSNSGRTIEAEAVFEELKESG  330 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  330 (664)
                      .+..+...+.+.|++++|++.|++..+.. +.+.                ..|..+..++.+.|++++|+..+++..+..
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            44556666777777888877777776542 1111                455555566666666666666666655542


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012          331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR  390 (664)
Q Consensus       331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  390 (664)
                      . .+...+..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++.
T Consensus       119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred             c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence            2 24555555555666666666666666655544221 3444555555444444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.96  E-value=0.00011  Score=63.12  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      .+..+...+.+.|++++|++.|+.+...+ +.+...|..+..++.+.|++++|...|++..+.... +...+..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence            34444555666666666666666665543 334555666666666666666666666666554322 4445555566666


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 006012          347 KMGYLKDAEFVVSEMER  363 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~  363 (664)
                      ..|++++|...|+...+
T Consensus        98 ~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666665554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.96  E-value=0.00016  Score=63.80  Aligned_cols=98  Identities=9%  Similarity=-0.024  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          440 THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL  519 (664)
Q Consensus       440 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~  519 (664)
                      ...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3444455555555566666666665555443 2345556666666666666666666666666554 3345566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 006012          520 LGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       520 ~~~~g~~~~a~~~~~~m~~~  539 (664)
                      +...|++++|.+.+++.++.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            66666666666666666553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.95  E-value=8.7e-05  Score=62.12  Aligned_cols=109  Identities=15%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY--FPC----TTTYNI  515 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~t~~~  515 (664)
                      .+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+...  .++    ...+..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444555555556666666655555433 23455555566666666666666666666554320  111    455566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          516 MINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD  553 (664)
Q Consensus       516 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  553 (664)
                      +...+...|++++|.+.+.++.+.  .|+......+..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~  120 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            666666666666666666666653  234444444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.95  E-value=0.0002  Score=60.71  Aligned_cols=98  Identities=14%  Similarity=-0.039  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      +...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...|++..+.... +...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence            44555555566666666666666666555433 234555555555666666666666666555554321 4455555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 006012          344 GYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~  363 (664)
                      ++...|++++|...+++..+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            55555555555555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.94  E-value=0.00017  Score=63.68  Aligned_cols=99  Identities=18%  Similarity=0.075  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      +...+..+...|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++.++.... +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            45566777777888888888888888877654 346777788888888888888888888887775432 5677777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 006012          344 GYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      +|...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888888888888888877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.94  E-value=9.9e-05  Score=61.76  Aligned_cols=98  Identities=16%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGL--KPR----TKAYN  339 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~----~~~~~  339 (664)
                      ..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...+++..+...  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345666667777777777777777776643 34566677777777777777777777777665321  112    45566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          340 ALLKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       340 ~li~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      .+...+...|++++|.+.++...+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            6666666666666666666666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.93  E-value=0.00049  Score=58.26  Aligned_cols=94  Identities=13%  Similarity=-0.015  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD  553 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  553 (664)
                      +...|..+...+.+.|++++|...|++..... +.+...|..+...+...|++++|...+++..+.+.. +...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence            45555666666666666666666666665554 334556666666666666666666666666654322 4556666666


Q ss_pred             HHHhcCChHHHHHHHh
Q 006012          554 IYGQSGRFDDAIECLE  569 (664)
Q Consensus       554 ~~~~~g~~~~A~~~~~  569 (664)
                      +|...|++++|+..++
T Consensus        86 ~~~~~~~~~~A~~~~~  101 (137)
T 3q49_B           86 CQLEMESYDEAIANLQ  101 (137)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHH
Confidence            6666666666666544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.00083  Score=69.76  Aligned_cols=161  Identities=11%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 006012          307 ITALSNSGRTIEAEAVFEELKESGLKPR----------------TKAYNALLKGYVKMGYLKDAEFVVSEMERSG-VLPD  369 (664)
Q Consensus       307 i~~~~~~g~~~~A~~l~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~  369 (664)
                      ...+.+.|++++|++.|..+.+......                ...+..+...|.+.|++++|.+.+..+.+.- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4556777888888888877776432211                0234556666666666666666666554310 0111


Q ss_pred             HH----HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 006012          370 EH----TYSLLIDAYANAGRWESARIVLKEMEV----SHAKP-NSFIYSRILAGYRDRGEWQRTFQVLKEMKSS--GV--  436 (664)
Q Consensus       370 ~~----~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~--  436 (664)
                      ..    +.+.+-..+...|+.++|..++++...    .+..+ -..++..+...|...|++++|..++.++...  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            11    112222222334555555555555432    11111 1234444555555555555555555544321  10  


Q ss_pred             CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006012          437 EP-DTHFYNVMIDTFGKYNCLHHAMAAFDRML  467 (664)
Q Consensus       437 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  467 (664)
                      .+ ...++..++..|...|++++|..+++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            01 12344444445555555555555554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.92  E-value=0.0001  Score=59.66  Aligned_cols=96  Identities=7%  Similarity=0.034  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006012          442 FYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFP--CTTTYNIMINL  519 (664)
Q Consensus       442 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~  519 (664)
                      .+..+...+.+.|++++|...+++..+.. +.+...|..+...|...|++++|.+.|++..+.. +.  +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            34444455555555555555555555432 2344555555566666666666666666665543 22  45555666666


Q ss_pred             HHhc-CCHHHHHHHHHHHHHC
Q 006012          520 LGEQ-ERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       520 ~~~~-g~~~~a~~~~~~m~~~  539 (664)
                      +... |++++|.+.+.+....
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHHHHHhhc
Confidence            6666 6666666666666554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.91  E-value=0.00041  Score=59.46  Aligned_cols=98  Identities=16%  Similarity=0.102  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD----TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYN  514 (664)
Q Consensus       439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~  514 (664)
                      +...+..+...+...|++++|...|++..+..  |+    ...|..+..+|.+.|++++|+..+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            34445555555555555555555555555432  33    3455555556666666666666666655543 33455555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          515 IMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       515 ~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      .+..++...|++++|.+.+++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5666666666666666666666553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.91  E-value=0.00045  Score=59.21  Aligned_cols=99  Identities=9%  Similarity=-0.012  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          404 NSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPD----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWN  479 (664)
Q Consensus       404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  479 (664)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+...|...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            3444555555555555555555555555543  233    4555555666666666666666666665542 23455666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006012          480 TLIDCHFKCGRYDRAEELFEEMQERG  505 (664)
Q Consensus       480 ~li~~~~~~g~~~~A~~~~~~m~~~~  505 (664)
                      .+..+|...|++++|...|++..+..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            66666777777777777777766653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.90  E-value=0.00019  Score=61.70  Aligned_cols=98  Identities=11%  Similarity=-0.014  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDA  379 (664)
Q Consensus       300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  379 (664)
                      ...+..+...+.+.|++++|...|++...... .+...|..+..++...|++++|...++...+.... +...+..+..+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   95 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence            44566666777777888888888877776533 26667777777777778888888777777765433 55666777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhc
Q 006012          380 YANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       380 ~~~~g~~~~A~~l~~~m~~~  399 (664)
                      |...|++++|...|++....
T Consensus        96 ~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            77777777777777776543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.89  E-value=0.00011  Score=59.62  Aligned_cols=97  Identities=14%  Similarity=0.057  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKP--RTKAYNALLK  343 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~  343 (664)
                      ..+..+...+...|++++|...|+++.+.. +.+...|..+...+.+.|++++|.+.|++..+.. +.  +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            344445555556666666666666555432 2344555555555566666666666665555432 11  3445555555


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHC
Q 006012          344 GYVKM-GYLKDAEFVVSEMERS  364 (664)
Q Consensus       344 ~~~~~-g~~~~a~~~~~~m~~~  364 (664)
                      ++.+. |++++|.+.++...+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhhc
Confidence            55555 5555555555555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.84  E-value=0.00014  Score=63.38  Aligned_cols=136  Identities=15%  Similarity=0.064  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 006012          477 TWNTLIDCHFKCGRYDRAEELFEEMQERGY-FPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGL-LPN----VV  546 (664)
Q Consensus       477 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~  546 (664)
                      ++..+...|...|++++|...+++..+... .++    ...+..+...+...|++++|.+.+++..+... ..+    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            455566666677777777777766654310 011    13566667777777888888777777664310 011    45


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          547 TYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SNLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       547 ~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ++..+...+...|++++|.+.++...    +....   .+..+ ....+..+...+...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~----~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHL----AIAQE---LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHH---ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            67777888888999998888765332    22221   11111 123567788888888999999888888765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.84  E-value=0.00016  Score=60.16  Aligned_cols=94  Identities=9%  Similarity=-0.059  Sum_probs=61.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      ..+...+.+.|++++|+..|+.+.+.. +.+...|..+..++.+.|++++|+..|++..+.... +...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            344555667777777777777776643 335666777777777777777777777776665322 455666666677777


Q ss_pred             CCHHHHHHHHHHHHHC
Q 006012          349 GYLKDAEFVVSEMERS  364 (664)
Q Consensus       349 g~~~~a~~~~~~m~~~  364 (664)
                      |++++|...+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            7777777777766653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.82  E-value=0.00014  Score=76.82  Aligned_cols=118  Identities=13%  Similarity=0.072  Sum_probs=60.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012          379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH  458 (664)
Q Consensus       379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  458 (664)
                      .+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            3445566666666666665543 2345555666666666666666666666655543 3344555555555556666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 006012          459 AMAAFDRMLSEGIEPDTITWNTLIDC--HFKCGRYDRAEELFE  499 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~  499 (664)
                      |.+.+++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666665555432 1122233333333  555555555555555

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.79  E-value=0.00017  Score=62.87  Aligned_cols=132  Identities=11%  Similarity=-0.021  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----H
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLS-PK----TATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR----T  335 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~  335 (664)
                      .++..+...|...|++++|++.+++..+.... ++    ..++..+...+...|++++|.+.+++..+.... .+    .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            45667777788888888888888776542100 11    135666777777777777777777766542100 11    3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          336 KAYNALLKGYVKMGYLKDAEFVVSEMERS----GVL-PDEHTYSLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       336 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      ..+..+...+...|++++|.+.+++..+.    +.. ....++..+...|...|++++|.+.+++..
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34555666666666666666666655431    100 012334445555555555555555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.77  E-value=0.00026  Score=58.89  Aligned_cols=95  Identities=15%  Similarity=-0.008  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          303 YAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYAN  382 (664)
Q Consensus       303 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  382 (664)
                      +..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|...+++..+.... +...+..+...|.+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            44556677777888888888877776533 26677777777777778888888877777765433 56677777777777


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 006012          383 AGRWESARIVLKEMEVS  399 (664)
Q Consensus       383 ~g~~~~A~~l~~~m~~~  399 (664)
                      .|++++|+..+++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777777777777653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.69  E-value=0.0015  Score=54.50  Aligned_cols=92  Identities=13%  Similarity=-0.004  Sum_probs=61.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKT---ATYAAVITALSNSGRTIEAEAVFEELKESGLKPR---TKAYNALLKG  344 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~  344 (664)
                      +...+...|++++|.+.|+.+.+.. +.+.   ..+..+..++.+.|++++|...|++..+.... +   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence            4456667788888888887776643 2222   46666777777777777777777777765322 2   4556667777


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 006012          345 YVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~  364 (664)
                      +...|++++|...++.+.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777777664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.65  E-value=0.00064  Score=71.34  Aligned_cols=123  Identities=8%  Similarity=-0.024  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPK---------------TATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      ...+..+...|.+.|++++|+..|+++.+.. +.+               ...|..+..++.+.|++++|+..|++.++.
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4456677788888889999998888877642 112               356666666666666666666666666654


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006012          330 GLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESAR  390 (664)
Q Consensus       330 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  390 (664)
                      .. .+...|..+..+|...|++++|...|++..+.... +...+..+...+.+.++.+++.
T Consensus       347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            32 25566666666666666666666666666654322 3445555555565555555544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.64  E-value=0.00051  Score=72.12  Aligned_cols=139  Identities=9%  Similarity=-0.056  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC  484 (664)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  484 (664)
                      ...|..+...+.+.|++++|...|++..+..  |+...          . .-+...    +..    ......|..+..+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~-~~~~~~----~~~----~~~~~~~~nla~~  326 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG----------L-SEKESK----ASE----SFLLAAFLNLAMC  326 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCS----------C-CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc----------C-ChHHHH----HHH----HHHHHHHHHHHHH
Confidence            4566677777777777877777777766531  11000          0 000000    000    0114567777888


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012          485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA  564 (664)
Q Consensus       485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  564 (664)
                      |.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++.... +...+..+..++.+.|+.+++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888775 556778888888888888888888888888875322 456777777788888777776


Q ss_pred             HH
Q 006012          565 IE  566 (664)
Q Consensus       565 ~~  566 (664)
                      .+
T Consensus       405 ~~  406 (457)
T 1kt0_A          405 DR  406 (457)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.63  E-value=0.00017  Score=76.17  Aligned_cols=115  Identities=10%  Similarity=-0.037  Sum_probs=51.6

Q ss_pred             hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          451 GKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK  530 (664)
Q Consensus       451 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~  530 (664)
                      .+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|.
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            34444555555555444432 2234445555555555555555555555555443 334445555555555555555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHH
Q 006012          531 RLLGNMRAQGLLPNVVTYTTLVDI--YGQSGRFDDAIECL  568 (664)
Q Consensus       531 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~  568 (664)
                      +.+++..+.... +...+..+..+  +.+.|++++|++.+
T Consensus        95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~  133 (477)
T 1wao_1           95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGD  133 (477)
T ss_dssp             HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            555555443211 12222223222  44455555555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.62  E-value=0.00057  Score=69.43  Aligned_cols=96  Identities=14%  Similarity=-0.018  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------------C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVG--------------L-SPKTATYAAVITALSNSGRTIEAEAVFEELKESGL  331 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------------~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~  331 (664)
                      .+..+...+.+.|++++|++.|+++.+.-              . +.+...|..+..++.+.|++++|++.+++.++...
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            46667788889999999999998877510              0 11233444444444444444444444444443321


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          332 KPRTKAYNALLKGYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       332 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  363 (664)
                       .+...|..+..+|...|++++|.+.+++..+
T Consensus       305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             1334444444444444444444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.60  E-value=0.0012  Score=57.08  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=69.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CC-----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHH
Q 006012          514 NIMINLLGEQERWEDVKRLLGNMRAQGLL------PN-----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVM  582 (664)
Q Consensus       514 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m  582 (664)
                      ......+.+.|++++|.+.|++.++....      .+     ...|..+..++.+.|++++|+..++    +|+++|++-
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~----kAL~l~n~~   90 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD----KALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHhhhcc
Confidence            33344445555555555555555543211      02     2388888999999999999998765    555555554


Q ss_pred             HHCCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          583 RTDGLKPSNL-AL----NSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       583 ~~~g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ..  +.|+.. .|    .....++...|++++|+..|++.++
T Consensus        91 ~e--~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           91 GE--LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             CC--TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cc--CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            43  567654 78    8999999999999999999999986

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.58  E-value=0.0021  Score=53.52  Aligned_cols=58  Identities=12%  Similarity=0.102  Sum_probs=23.9

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012          445 VMIDTFGKYNCLHHAMAAFDRMLSEGIEPD---TITWNTLIDCHFKCGRYDRAEELFEEMQE  503 (664)
Q Consensus       445 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~  503 (664)
                      .+...+.+.|++++|...|+...+... .+   ...+..+..+|.+.|++++|...|+++.+
T Consensus        44 ~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           44 WLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333344444444444444444433221 11   23334444444444444444444444444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.57  E-value=0.00015  Score=59.94  Aligned_cols=86  Identities=13%  Similarity=0.066  Sum_probs=51.0

Q ss_pred             cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          278 AGDASKAMRFLGMAQGVG--LSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE  355 (664)
Q Consensus       278 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  355 (664)
                      .|++++|+..|++..+.+  -+.+...|..+...+.+.|++++|++.|++..+.... +...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            456666677776666543  1223455666666667777777777777766665332 4556666666666677777777


Q ss_pred             HHHHHHHHC
Q 006012          356 FVVSEMERS  364 (664)
Q Consensus       356 ~~~~~m~~~  364 (664)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.57  E-value=0.00061  Score=69.16  Aligned_cols=140  Identities=9%  Similarity=-0.028  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          405 SFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDC  484 (664)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  484 (664)
                      ...+..+...+.+.|++++|+..|++..+.-  +..          ......+.+..       .. +.+...|..+..+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~  282 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence            4557777778888888888888887766420  000          00001111110       00 1235667778888


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006012          485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDA  564 (664)
Q Consensus       485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  564 (664)
                      |.+.|++++|++.+++.++.. +.+...|..+..+|...|++++|.+.+++..+.... +...+..+..++.+.++.+++
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888765 456778888888888888888888888888875322 566777777777777766665


Q ss_pred             HH
Q 006012          565 IE  566 (664)
Q Consensus       565 ~~  566 (664)
                      .+
T Consensus       361 ~k  362 (370)
T 1ihg_A          361 EK  362 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.52  E-value=0.00015  Score=59.80  Aligned_cols=86  Identities=15%  Similarity=0.112  Sum_probs=51.0

Q ss_pred             cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          453 YNCLHHAMAAFDRMLSEG--IEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVK  530 (664)
Q Consensus       453 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~  530 (664)
                      .|++++|+..|++.++.+  -+.+...+..+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            355566666666666542  11234456666666667777777777777766654 344666666666677777777777


Q ss_pred             HHHHHHHHC
Q 006012          531 RLLGNMRAQ  539 (664)
Q Consensus       531 ~~~~~m~~~  539 (664)
                      ..+.+....
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777666654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.52  E-value=0.001  Score=58.44  Aligned_cols=65  Identities=12%  Similarity=0.092  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|...+.+.++.
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            34567778888888888888888888888775 556778888888888888888888888888875

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.52  E-value=0.00036  Score=73.28  Aligned_cols=130  Identities=12%  Similarity=0.019  Sum_probs=90.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHH
Q 006012          485 HFKCGRYDRAEELFEEMQER---GYFP----CTTTYNIMINLLGEQERWEDVKRLLGNMRAQ-----GLL-PN-VVTYTT  550 (664)
Q Consensus       485 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~  550 (664)
                      +...|++++|+.++++.++.   -+.|    ...+++.|..+|...|++++|..++.+.++-     |.. |+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44577888888887776542   1122    2456777888888888888888888776542     221 22 467788


Q ss_pred             HHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          551 LVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       551 li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      |...|...|++++|+.+++    +|++++........ |+ ..+.+.+..++...|.+++|..+++++++
T Consensus       399 La~~~~~~G~~~eA~~~~~----~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMIC----KAYAILLVTHGPSH-PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHH----HHHHHHHHHTCTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHH----HHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998765    56666655443221 22 23566777888889999999999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.50  E-value=0.0013  Score=57.59  Aligned_cols=99  Identities=19%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGV-------GL----------SPKTATYAAVITALSNSGRTIEAEAVFEELK  327 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  327 (664)
                      ...+......+.+.|++++|++.|+.....       +-          +.+...|..+..++.+.|++++|+..+++.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666777888899999999998887653       00          1122345555555555666666666655555


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          328 ESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       328 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      +... .+...|..+..+|...|++++|...|+...+.
T Consensus        91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            5422 24455555555555555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.46  E-value=0.0061  Score=65.48  Aligned_cols=133  Identities=6%  Similarity=-0.067  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 006012          281 ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR----------TIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG-  349 (664)
Q Consensus       281 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-  349 (664)
                      .++|++.++.+.... +.+...|+.--.++.+.|+          ++++++.++.+.+...+ +..+|+.-...+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            356677777777653 3345667666666666665          67777777777765443 5666666666666666 


Q ss_pred             -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012          350 -YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG-RWESARIVLKEMEVSHAKPNSFIYSRILAGYRD  417 (664)
Q Consensus       350 -~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~  417 (664)
                       +++++.+.++++.+.... |..+|+.....+.+.| .++++++.++++.+.. +-|...|+.....+.+
T Consensus       123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence             557777777777765543 6666766666666666 6667777766666554 3455556555554443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.45  E-value=0.001  Score=69.85  Aligned_cols=130  Identities=8%  Similarity=0.031  Sum_probs=96.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH
Q 006012          519 LLGEQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN  591 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~  591 (664)
                      .+...|++++|+.++++..+.   -+-|+    ..+++.|..+|...|++++|..+++    ++++++.+..... .|+.
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~----~aL~i~~~~lG~~-Hp~~  392 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR----RMVDGYMKLYHHN-NAQL  392 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHSCTT-CHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHHcCCC-CHHH
Confidence            456789999999999888753   12222    4688999999999999999998865    5555555544322 2333


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006012          592 -LALNSLINAFGEDQRDAEAFAVLQYMKE-----NGL-KPD-VVTYTTLMKALIRVDKFHKVFSSYLFFN  653 (664)
Q Consensus       592 -~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l~~a~~~~g~~~~A~~~~~~~~  653 (664)
                       .+++.|...|...|++++|+.++++..+     .|- .|+ ..+...+..++...+++++|+..|....
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4789999999999999999999998874     232 122 3455677778888999999999998653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.44  E-value=0.0078  Score=64.69  Aligned_cols=171  Identities=9%  Similarity=0.001  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--
Q 006012          352 KDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGR----------WESARIVLKEMEVSHAKPNSFIYSRILAGYRDRG--  419 (664)
Q Consensus       352 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g--  419 (664)
                      ++|.+.++.+.+.+.. +..+|+.--..+.+.|+          ++++++.++.+.+.. +-+..+|+.-...+.+.+  
T Consensus        46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence            3445555555444322 34444444444444443          555555555555443 234455555555555555  


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------
Q 006012          420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN-CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC----------  488 (664)
Q Consensus       420 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------  488 (664)
                      +++++++.++++.+.. +-+..+|+.-...+.+.| .++++.+.++++++.. .-+...|+.....+.+.          
T Consensus       124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence            4455555555555543 334555555555555555 5566666666665544 23555565555555442          


Q ss_pred             ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          489 ----GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWE  527 (664)
Q Consensus       489 ----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~  527 (664)
                          +.++++++.+++.+... +-+...|+.+-..+.+.++.+
T Consensus       202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred             cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence                45688888888888765 556778887777777766633

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.42  E-value=0.00052  Score=59.17  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=83.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006012          521 GEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLIN  599 (664)
Q Consensus       521 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~  599 (664)
                      .+.+.+++|.+.+++.++.+.. +...|..+..++...|+++.+...+ ++.++|+..|++..+  +.|+ ...|..+..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al-~~~~eAi~~le~AL~--ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAK-QMIQEAITKFEEALL--IDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhH-hHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence            4556678888888888876533 7788888888888888776555544 356777888888887  4564 568999999


Q ss_pred             HHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          600 AFGEDQ-----------RDAEAFAVLQYMKENGLKPDVVTYTTLMKAL  636 (664)
Q Consensus       600 ~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~  636 (664)
                      +|...|           ++++|++.|+++++  +.|+...|...+...
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            998875           89999999999999  788877776555543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.36  E-value=0.00048  Score=69.05  Aligned_cols=147  Identities=13%  Similarity=0.025  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      ..+..+...+.+.|++++|+..|++....  .|+...       +...++..++...+   .       ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence            34556677778889999999999887764  243321       11122222222111   0       12455555566


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 006012          346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAG-YRDRGEWQRT  424 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a  424 (664)
                      .+.|++++|...+++..+... .+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666555432 245555566666666666666666666554332 1122333333333 1223445555


Q ss_pred             HHHHHHHHH
Q 006012          425 FQVLKEMKS  433 (664)
Q Consensus       425 ~~~~~~m~~  433 (664)
                      ...|..|..
T Consensus       319 ~~~~~~~l~  327 (338)
T 2if4_A          319 KEMYKGIFK  327 (338)
T ss_dssp             ---------
T ss_pred             HHHHHHhhC
Confidence            555555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.33  E-value=0.0031  Score=54.47  Aligned_cols=61  Identities=11%  Similarity=0.034  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          337 AYNALLKGYVKMGYLKDAEFVVSEMERS-----GVLP-DEHTY----SLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       337 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~-~~~~~----~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      .|+.+..++.+.|++++|+..+++.++.     .+.| +...|    .....++...|++++|+..|++..
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            4555555555555555555555554442     0122 23344    555555555555555555555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.30  E-value=0.0083  Score=50.93  Aligned_cols=111  Identities=12%  Similarity=-0.057  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 006012          279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDA  354 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a  354 (664)
                      +++++|++.|++..+.| .+...    +...|...+.+++|.+.|++..+.|   +...+..|...|..    .++.++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45667777777777665 33332    5555555666666777777766653   45666666666666    5677777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 006012          355 EFVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVSH  400 (664)
Q Consensus       355 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~  400 (664)
                      .+.|++..+.|   +...+..|...|..    .++.++|...|++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77777766654   55666666666666    666666666666665544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.29  E-value=0.00057  Score=68.51  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          369 DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMID  448 (664)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  448 (664)
                      ....+..+...+.+.|++++|...|++.....  |+...       +...++.+++...+.          ..+|..+..
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~  238 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence            35667777888888899999999888877642  33221       222333333332221          135677777


Q ss_pred             HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 006012          449 TFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINL-LGEQERWE  527 (664)
Q Consensus       449 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~  527 (664)
                      +|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888888877654 3466777788888888888888888888876653 2233444444433 23345566


Q ss_pred             HHHHHHHHHHHC
Q 006012          528 DVKRLLGNMRAQ  539 (664)
Q Consensus       528 ~a~~~~~~m~~~  539 (664)
                      ++..++.+|...
T Consensus       317 ~a~~~~~~~l~~  328 (338)
T 2if4_A          317 KQKEMYKGIFKG  328 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhhCC
Confidence            677777777654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.29  E-value=0.011  Score=50.15  Aligned_cols=110  Identities=6%  Similarity=-0.102  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 006012          420 EWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAE  495 (664)
Q Consensus       420 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~  495 (664)
                      ++++|++.|++..+.| .+...    +...|...+.+++|.+.|++..+.|   +...+..|...|..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4555555555555554 22222    4444555555566666666666543   45555556666655    56666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 006012          496 ELFEEMQERGYFPCTTTYNIMINLLGE----QERWEDVKRLLGNMRAQG  540 (664)
Q Consensus       496 ~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~  540 (664)
                      +.|++..+.|   +...+..|...|..    .++.++|.+.+++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666666654   35555556666655    566666666666666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00057  Score=55.27  Aligned_cols=91  Identities=11%  Similarity=0.007  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-------VV  546 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~  546 (664)
                      +...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|.+.+++.++..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            34556667777778888888888888877765 4567777777888888888888888888887653  33       45


Q ss_pred             HHHHHHHHHHhcCChHHHHHH
Q 006012          547 TYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       547 ~~~~li~~~~~~g~~~~A~~~  567 (664)
                      .+..+..++...|+++.|++.
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhH
Confidence            556666666666666655443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.11  E-value=0.0053  Score=47.17  Aligned_cols=81  Identities=16%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          475 TITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI  554 (664)
Q Consensus       475 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  554 (664)
                      ...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+... -+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            3445556666666666666666666666554 33455666666666667777777777766665432 144555555555


Q ss_pred             HHh
Q 006012          555 YGQ  557 (664)
Q Consensus       555 ~~~  557 (664)
                      +.+
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.08  E-value=0.0059  Score=46.89  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKG  344 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~  344 (664)
                      ...+..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...+..+...
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            3455556666666667777766666665543 23455566666666666666666666666655422 134444444444


Q ss_pred             HH
Q 006012          345 YV  346 (664)
Q Consensus       345 ~~  346 (664)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0005  Score=55.58  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      ...+..+...+...|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++..+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3455566666677777777777777666543 335666666777777777777777777776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.00  E-value=0.0054  Score=49.93  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      |...|++..+.. +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555443 2345566666666666777777777776666654 34456666666666777777777776666654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.93  E-value=0.0075  Score=49.05  Aligned_cols=76  Identities=11%  Similarity=-0.087  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          285 MRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEME  362 (664)
Q Consensus       285 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  362 (664)
                      ++.|+.+.+.. +.+...+..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|...|++..
T Consensus         5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444332 22344445555555555555555555555444321 134444455555555555555555555444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.82  E-value=0.0051  Score=48.75  Aligned_cols=64  Identities=27%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      +...+..+...|.+.|++++|++.|++.++.+ +.+...|..+..+|...|++++|.+.+++.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45556666666666666666666666666654 33455666666666666666666666666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.81  E-value=0.0034  Score=54.05  Aligned_cols=92  Identities=9%  Similarity=0.005  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR----------YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ  523 (664)
Q Consensus       454 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~  523 (664)
                      +.+++|.+.++...+.. +.+...|+.+..++...++          +++|+..|++.++.+ +.+...|..+..+|...
T Consensus        16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence            44566666666665543 3355566656556665554          357777777777765 44666777777777765


Q ss_pred             C-----------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          524 E-----------RWEDVKRLLGNMRAQGLLPNVVTYT  549 (664)
Q Consensus       524 g-----------~~~~a~~~~~~m~~~~~~p~~~~~~  549 (664)
                      |           ++++|.+.|++.++.  .|+...|.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~  128 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL  128 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence            4           788888888888874  56554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.79  E-value=0.091  Score=59.24  Aligned_cols=126  Identities=13%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKC  488 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  488 (664)
                      ..++..+.+.|.++.|.++.+.-.            .-.......|+++.|.++.+.+      .+...|..+...+.+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence            445555566666666665442110            1123345567777777765432      4567788888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          489 GRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       489 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      |+++.|.+.|.++.+         |..+...+...|+.+...++.+.....|-      ++....+|.+.|++++|+++
T Consensus       695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~  758 (814)
T 3mkq_A          695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL  758 (814)
T ss_dssp             TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence            888888888877643         33444455556666666665555554431      23344455666666666655

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.77  E-value=0.0064  Score=48.17  Aligned_cols=66  Identities=17%  Similarity=0.070  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012          262 ELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE  328 (664)
Q Consensus       262 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  328 (664)
                      +.+...+..+...|.+.|++++|++.|+++.+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3456677777888888888888888888877754 33566788888888888888888888877664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.74  E-value=0.1  Score=51.67  Aligned_cols=58  Identities=16%  Similarity=0.069  Sum_probs=35.2

Q ss_pred             HHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCCCC
Q 006012          168 ILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACA--RND---DLEKALNLMSKMRQDGYHCD  227 (664)
Q Consensus       168 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~  227 (664)
                      .++.++.-.-.-.++.......+.++.+|...+++..  ..+   ...+|+.+|++..+..  |+
T Consensus       169 ~I~~aL~~~l~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~  231 (372)
T 3ly7_A          169 SLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PE  231 (372)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TT
T ss_pred             HHHHHhCchhhHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CC
Confidence            3444444333333443444445667778888776654  333   3588999999999874  55

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.42  E-value=0.014  Score=60.02  Aligned_cols=93  Identities=4%  Similarity=-0.071  Sum_probs=66.5

Q ss_pred             hcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HH
Q 006012          522 EQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LA  593 (664)
Q Consensus       522 ~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~  593 (664)
                      ..|++++|..++++..+.   -+-|+    ..+++.|..+|...|++++|+.+++    ++++++.+..... .|+. .+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~----~aL~i~~~~lG~~-Hp~~a~~  384 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ----KIIKPYSKHYPVY-SLNVASM  384 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHSCSS-CHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH----HHHHHHHHHcCCC-ChHHHHH
Confidence            346777777777766542   12222    4678888999999999999988765    4555555444221 2343 47


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          594 LNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       594 ~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      ++.|...|...|++++|+.++++..+
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            89999999999999999999999875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.27  E-value=0.034  Score=57.31  Aligned_cols=98  Identities=13%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC
Q 006012          517 INLLGEQERWEDVKRLLGNMRAQ---GLLPN----VVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP  589 (664)
Q Consensus       517 l~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p  589 (664)
                      +..+.+.|++++|..++++..+.   -+.|+    ..+++.|..+|...|++++|+.+++    ++++++.+.... -.|
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~----~~L~i~~~~lg~-~Hp  368 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT----RTMEPYRIFFPG-SHP  368 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHH----HHHHHHHHHSCS-SCH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHH----HHHHhHHHHcCC-CCh
Confidence            34455677888888888888753   12222    4678888999999999999998865    455555544422 223


Q ss_pred             CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          590 SN-LALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       590 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      +. .+++.|...|...|++++|+.+++++.+
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            33 4789999999999999999999998874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.26  E-value=0.24  Score=55.76  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             HHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          275 FAKAGDASKAMR-FLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKD  353 (664)
Q Consensus       275 ~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  353 (664)
                      ....+++++|.+ ++..+      ++......++..+.+.|..++|+++.+.-.            .-.......|++++
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence            345678888766 44221      112233667777777888888776653211            11233456788888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          354 AEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       354 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      |.++.+.+      .+...|..+...+.+.++++.|.+.|.++.
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            87775443      266778888888888888888887777664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.95  E-value=0.29  Score=48.42  Aligned_cols=74  Identities=15%  Similarity=0.033  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          542 LPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG  621 (664)
Q Consensus       542 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  621 (664)
                      ..++.+|..+...+...|++++|+..++           +....  .|+...|..+...+.-.|++++|.+.+++...  
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~-----------rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--  338 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAIN-----------TGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--  338 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHH-----------HHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHH-----------HHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence            4577888888777777788888887744           33332  37777788888888889999999999998888  


Q ss_pred             CCCCHHHHH
Q 006012          622 LKPDVVTYT  630 (664)
Q Consensus       622 ~~p~~~~~~  630 (664)
                      +.|...+|.
T Consensus       339 L~P~~~t~~  347 (372)
T 3ly7_A          339 LRPGANTLY  347 (372)
T ss_dssp             HSCSHHHHH
T ss_pred             cCCCcChHH
Confidence            577776655

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.89  E-value=0.0085  Score=61.74  Aligned_cols=89  Identities=8%  Similarity=-0.086  Sum_probs=64.2

Q ss_pred             hcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHH
Q 006012          557 QSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKE-----NG-LKPD-VVT  628 (664)
Q Consensus       557 ~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~  628 (664)
                      ..|++++|+.+++.    ++++..+.... -.|+ ..+++.|..+|...|++++|+.+++++++     .| -.|+ ..+
T Consensus       310 ~~g~~~eA~~~~~~----~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          310 HYKSPSELLEICEL----SQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             TTSCHHHHHHHHHH----HHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             hccCHHHHHHHHHH----HHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            45788988887653    22222221111 1122 24789999999999999999999999874     23 1233 367


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHH
Q 006012          629 YTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       629 ~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      ++.|...|..+|++++|+.+|+
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~  406 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALK  406 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHH
Confidence            8999999999999999999998

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.76  E-value=0.035  Score=43.38  Aligned_cols=58  Identities=17%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESG  330 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~  330 (664)
                      ...+.+.|++++|++.|+++.+.. +.+.. .|..+..++.+.|++++|.+.|++..+..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            445667778888888887777643 33456 77777777777788888888887777653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.55  E-value=0.12  Score=53.29  Aligned_cols=89  Identities=15%  Similarity=0.092  Sum_probs=45.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHH
Q 006012          309 ALSNSGRTIEAEAVFEELKESG---LKP----RTKAYNALLKGYVKMGYLKDAEFVVSEMER-----SGV-LPD-EHTYS  374 (664)
Q Consensus       309 ~~~~~g~~~~A~~l~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~-~~~~~  374 (664)
                      .+.+.|++++|+.++++..+..   +.|    ...+++.|...|...|++++|+.++++..+     .|. .|+ ..+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            3444555555555555554321   111    133455555666666666666665555442     121 111 34455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 006012          375 LLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       375 ~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      .|...|...|++++|+.++++..
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Confidence            66666666666666666666553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.49  E-value=0.074  Score=41.39  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=37.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          482 IDCHFKCGRYDRAEELFEEMQERGYFPCTT-TYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       482 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      ...+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|.+.+++.++.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            345566677777777777766654 33455 6666666777777777777777777664

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.29  E-value=1.3  Score=38.50  Aligned_cols=103  Identities=11%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          273 VGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLK  352 (664)
Q Consensus       273 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  352 (664)
                      ....+.|+++.|.++.+.+      .+...|..|.+...+.|+++-|.+.|.....         +..+.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            3455778999998887765      3677899999999999999999999888653         445666677778887


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          353 DAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       353 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      ...++-+.....|-      ++.....+.-.|+++++.++|.+.
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            77766666655541      344445566678888888887554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.04  E-value=1.2  Score=36.53  Aligned_cols=68  Identities=19%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL  542 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  542 (664)
                      +....+..++.+...|+-|+-.+++.++.... +|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            34445555666667777777777777654433 566666677777777777777777777777766653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.39  E-value=0.27  Score=38.01  Aligned_cols=65  Identities=15%  Similarity=0.004  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          264 DGQLLNDVIVGFAKAGD---ASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      |...+..+..++...++   .++|..++++..+.. +.++.+...+...+.+.|++++|+..|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            33444444444433322   455555555555432 223444555555555555555555555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.10  E-value=2.7  Score=36.57  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          346 VKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       346 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      .+.|+++.|.++.+.+      -+...|..|.+.....|+++-|.+.|.+.
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3445555555554443      14445555555555555555555555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.07  E-value=0.44  Score=36.75  Aligned_cols=66  Identities=8%  Similarity=-0.046  Sum_probs=39.7

Q ss_pred             CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006012          473 PDTITWNTLIDCHFKCGR---YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQ  539 (664)
Q Consensus       473 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  539 (664)
                      .+...+..+..++...++   .++|..++++.++.+ +-+......+...+.+.|++++|...|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344555555555543333   466666666666665 455666666666666666666666666666665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.00  E-value=0.52  Score=37.17  Aligned_cols=67  Identities=13%  Similarity=-0.046  Sum_probs=43.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG------LSPKTATYAAVITALSNSGRTIEAEAVFEELKES  329 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  329 (664)
                      .+...+-.|...+.+.|++..|...|+.+.+.-      -.+....+..+..++.+.|+++.|...+++..+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            345556677777788888888888887765421      1233556666667777777777777777666654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.87  E-value=0.65  Score=39.38  Aligned_cols=82  Identities=12%  Similarity=0.056  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006012          456 LHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCG---RYDRAEELFEEMQERGYFP--CTTTYNIMINLLGEQERWEDVK  530 (664)
Q Consensus       456 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~  530 (664)
                      +..+++-|.+..+.+. ++..+.-.+.-++++.+   ++++++.+|++..+.+ .|  ....+..+.-++.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            4455555555555543 56666666666666666   4557777777766654 23  2344445555667777777777


Q ss_pred             HHHHHHHHC
Q 006012          531 RLLGNMRAQ  539 (664)
Q Consensus       531 ~~~~~m~~~  539 (664)
                      +.++.+.+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777777763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.50  E-value=0.62  Score=39.52  Aligned_cols=81  Identities=17%  Similarity=0.089  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 006012          282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSG---RTIEAEAVFEELKESGLKP--RTKAYNALLKGYVKMGYLKDAEF  356 (664)
Q Consensus       282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~  356 (664)
                      ..+.+.|.+..+.| .++..+...+..++++.+   +++++..+|++..+.+ .|  +...+-.|.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            34445555555444 356666666666777766   4556777777766653 12  23444455566677777777777


Q ss_pred             HHHHHHHC
Q 006012          357 VVSEMERS  364 (664)
Q Consensus       357 ~~~~m~~~  364 (664)
                      .++.+.+.
T Consensus        93 y~~~lL~i  100 (152)
T 1pc2_A           93 YVRGLLQT  100 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            77777664

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.99  E-value=3.2  Score=34.03  Aligned_cols=140  Identities=14%  Similarity=0.062  Sum_probs=87.0

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE  355 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  355 (664)
                      .-.|.+++..++..+...   +.+..-||.+|--....-+-+...++++.+-+.   -|.          ..+|++....
T Consensus        18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence            345778888888877765   346667777777666666666666666655431   121          1233333333


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSG  435 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  435 (664)
                      ..+-.+-     .+.......++.+...|+.++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-+.|
T Consensus        82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            3332221     1344555666777777777777777777533 236677777777788888888888888888777777


Q ss_pred             CC
Q 006012          436 VE  437 (664)
Q Consensus       436 ~~  437 (664)
                      ++
T Consensus       156 ~k  157 (172)
T 1wy6_A          156 EK  157 (172)
T ss_dssp             CH
T ss_pred             hH
Confidence            53

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.81  E-value=1  Score=35.44  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012          476 ITWNTLIDCHFKCGRYDRAEELFEEMQE  503 (664)
Q Consensus       476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  503 (664)
                      ..+..|..+|.+.|++++|+.+++++.+
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3444444444444444555444444444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.03  E-value=1.1  Score=42.39  Aligned_cols=92  Identities=12%  Similarity=0.058  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 006012          281 ASKAMRFLGMAQGVGLSPK---TATYAAVITALSNS-----GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM-GYL  351 (664)
Q Consensus       281 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~  351 (664)
                      ...|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45667777777764  455   55788888888884     88888888888888765433467777788888874 888


Q ss_pred             HHHHHHHHHHHHCCCC--CCHHHHH
Q 006012          352 KDAEFVVSEMERSGVL--PDEHTYS  374 (664)
Q Consensus       352 ~~a~~~~~~m~~~g~~--~~~~~~~  374 (664)
                      +++.+.+++.......  |+....+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHH
Confidence            8888888888887655  5544433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=90.36  E-value=2.5  Score=40.12  Aligned_cols=85  Identities=16%  Similarity=0.100  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 006012          316 TIEAEAVFEELKESGLKPR---TKAYNALLKGYVK-----MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANA-GRW  386 (664)
Q Consensus       316 ~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~  386 (664)
                      ...|..++++.++.  .|+   -..|..|...|.+     .|+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            34555666665554  333   3466666666666     367777777777776654332356666666666663 667


Q ss_pred             HHHHHHHHHHHhcCCC
Q 006012          387 ESARIVLKEMEVSHAK  402 (664)
Q Consensus       387 ~~A~~l~~~m~~~~~~  402 (664)
                      +++.+.+++.......
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            7777777776665444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.09  E-value=2.1  Score=35.89  Aligned_cols=103  Identities=9%  Similarity=0.041  Sum_probs=57.1

Q ss_pred             CCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHC
Q 006012          298 PKTATYAAVITALSNSGRT------IEAEAVFEELKESGLKPRTK----AYNALLK---GYVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       298 ~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~~~  364 (664)
                      .|..+|-..+...-+.|+.      +..+++|++.... ++|+..    .|--|--   .+...+++++|.++|+.+.+.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3566666666666666666      6666777766653 344311    1110100   112336677777777777554


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006012          365 GVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAK  402 (664)
Q Consensus       365 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~  402 (664)
                      +-.- ...|-.....-.+.|++..|.+++......+.+
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            2222 555666666666677777777777766665533

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.64  E-value=6.9  Score=42.80  Aligned_cols=53  Identities=13%  Similarity=0.082  Sum_probs=45.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006012          597 LINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSSYL  650 (664)
Q Consensus       597 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~~~  650 (664)
                      -..-|...|+++-|+++.++.... .+-+..+|..|..+|.+.|+++.|+-.+.
T Consensus       343 Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLN  395 (754)
T 4gns_B          343 QTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence            345567789999999999999983 24468999999999999999999997776

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.07  E-value=1.6  Score=35.53  Aligned_cols=82  Identities=17%  Similarity=0.088  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          282 SKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIE---AEAVFEELKESGLK-PRTKAYNALLKGYVKMGYLKDAEFV  357 (664)
Q Consensus       282 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~  357 (664)
                      ..+.+.|......| .++..+-..+..++++.....+   ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.+.
T Consensus        18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            34444444444333 2555555555666666655444   66666665554211 1222333445556666666666666


Q ss_pred             HHHHHHC
Q 006012          358 VSEMERS  364 (664)
Q Consensus       358 ~~~m~~~  364 (664)
                      ++.+.+.
T Consensus        97 ~~~lL~~  103 (126)
T 1nzn_A           97 VRGLLQT  103 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.91  E-value=34  Score=38.35  Aligned_cols=20  Identities=10%  Similarity=0.094  Sum_probs=9.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 006012          344 GYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~  363 (664)
                      +|+..|+.....+++..+..
T Consensus       569 AyaGTGn~~aIq~LL~~~~~  588 (963)
T 4ady_A          569 AYAGTGNNSAVKRLLHVAVS  588 (963)
T ss_dssp             HTTTSCCHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHhcc
Confidence            34444554444445555544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=88.88  E-value=3.2  Score=34.86  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCChHHHHHHHHHHHHcC
Q 006012          264 DGQLLNDVIVGFAKAGDA------SKAMRFLGMAQGVGLSPKTA-TYAAVIT------ALSNSGRTIEAEAVFEELKESG  330 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~g~~~~~~-~~~~li~------~~~~~g~~~~A~~l~~~m~~~~  330 (664)
                      |..+|-..+...-+.|+.      ++.+++|+++... ++|+.. .|...|.      .+...++.++|.++|+.+++.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            444454445544455555      5666666666542 344321 1111111      1233488999999999997754


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012          331 LKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPD  369 (664)
Q Consensus       331 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  369 (664)
                      -+- ...|......-.+.|++..|.+++...+..+.+|.
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            333 77777777888899999999999999998877644

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.76  E-value=17  Score=34.86  Aligned_cols=179  Identities=16%  Similarity=0.108  Sum_probs=92.1

Q ss_pred             ccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCh--HHHHHH
Q 006012          175 RSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDS--SLLQKL  252 (664)
Q Consensus       175 ~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~~~~~l  252 (664)
                      ..|++.||.+          .|.++..-|.+.+++++|++++..-..               .+.+.|+...  .++..+
T Consensus        25 ~~G~yYEAhQ----------~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ll   79 (312)
T 2wpv_A           25 KAGDYYEAHQ----------TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYL   79 (312)
T ss_dssp             HHTCHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHH
T ss_pred             hccChHHHHH----------HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHH
Confidence            4567777776          777777788888888888887554221               1122222211  122334


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH----hCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006012          253 YKEIECDKIELDGQLLNDVIVGFAKAGDAS-KAMRFLGMAQ----GVGL--SPKTATYAAVITALSNSGRTIEAEAVFEE  325 (664)
Q Consensus       253 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~-~A~~~~~~~~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~  325 (664)
                      .+-..+.+++++......++..+.....-+ .=.++.+.+.    +.|-  .-+......+...|.+.|++.+|...|-.
T Consensus        80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~  159 (312)
T 2wpv_A           80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML  159 (312)
T ss_dssp             HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence            444555566666666666666554432111 1122222222    2221  23667777888888888888887776641


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          326 LKESGLKPRTKAYNALLKGYVKM---GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       326 m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                          |-.-+...+..++.-+.+.   |...++-              ...-.+ +-.|.-.|+...|..+|+...
T Consensus       160 ----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra-VL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          160 ----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL-VFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred             ----CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence                1111233444444333333   3332221              111111 223556677777777777654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.10  E-value=9.4  Score=44.58  Aligned_cols=164  Identities=11%  Similarity=0.094  Sum_probs=102.9

Q ss_pred             HHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHH
Q 006012          171 HALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQ  250 (664)
Q Consensus       171 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~  250 (664)
                      ..+.+.+.++.+..+..-.+.++...-.+..+|...|++++|.+.|.+.-. |+..+......+               .
T Consensus       820 ~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~---------------~  883 (1139)
T 4fhn_B          820 EKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL---------------R  883 (1139)
T ss_dssp             HHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH---------------H
T ss_pred             HHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh---------------c
Confidence            334444555555555333455666667777888889999999999977532 222221111000               0


Q ss_pred             HHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHH
Q 006012          251 KLYKEIECD--KIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKT----ATYAAVITALSNSGRTIEAEAVFE  324 (664)
Q Consensus       251 ~l~~~~~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~  324 (664)
                      . ...+...  ....-...|..++..+-+.|.++.++++-..+.+..-+.+.    ..|..+.+.+...|++++|...+-
T Consensus       884 ~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          884 E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            1 1111111  11223456888888999999999999888776653212221    257888999999999999999998


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006012          325 ELKESGLKPRTKAYNALLKGYVKMGYLKD  353 (664)
Q Consensus       325 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~  353 (664)
                      .+.....  -......|+..+|..|..+.
T Consensus       963 ~~pd~~~--r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          963 VLSTTPL--KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred             hCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence            8876543  45677788888887776554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.06  E-value=1.9  Score=35.14  Aligned_cols=23  Identities=9%  Similarity=0.309  Sum_probs=10.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 006012          411 ILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                      +.-++.+.|++++|.+.++.+.+
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            33444444444444444444444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.71  E-value=25  Score=35.90  Aligned_cols=50  Identities=14%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006012          279 GDASKAMRFLGMAQG-----VGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE  328 (664)
Q Consensus       279 g~~~~A~~~~~~~~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  328 (664)
                      |+++.|++.+-.+.+     .+..-.......++..|.+.|+++...+.+..+.+
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk   84 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK   84 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            667777776644432     12233455666777777777777777666655544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.49  E-value=12  Score=43.59  Aligned_cols=201  Identities=10%  Similarity=0.035  Sum_probs=114.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--------------------C-
Q 006012          411 ILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLS--------------------E-  469 (664)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------~-  469 (664)
                      ++..+...+.++.+.++....     +.+....-.+..+|...|++++|...|.+...                    . 
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            344445555555444433221     22333334445566667777777777654311                    0 


Q ss_pred             -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012          470 -GIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCT----TTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN  544 (664)
Q Consensus       470 -g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  544 (664)
                       ....-..-|..++..+.+.|.++.+.++-+..++..-.-+.    ..|..+++++...|++++|...+-.+.....  -
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r  970 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K  970 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence             00112234677888888888888888888777654322222    2577888889999999999888888876543  3


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHH-HhhhHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006012          545 VVTYTTLVDIYGQSGRFDDAIEC-LEGLSDQAVNAFRVMRTD--GLKPSNLALNSLINAFGEDQRDAEAFA-VLQYMK  618 (664)
Q Consensus       545 ~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~  618 (664)
                      ......|+..+|..|..+.-..+ |-|+.++-.+++....+.  .....+.-|..|..-+...|++..|-. +|+++.
T Consensus       971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence            56677888888888877665443 224444433333322211  011112335555555566777665554 344443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=86.40  E-value=0.0016  Score=65.80  Aligned_cols=242  Identities=14%  Similarity=0.109  Sum_probs=119.4

Q ss_pred             HHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCC
Q 006012          165 LYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKI  244 (664)
Q Consensus       165 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  244 (664)
                      +|+.|..++.+.+++.+|+.. -....|+..|..+|.+..+.|.+++-+..+.-.++.  .-+...=+.++-+|++.++.
T Consensus        56 VWs~LgkAqL~~~~v~eAIds-yIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL  132 (624)
T 3lvg_A           56 VWSQLAKAQLQKGMVKEAIDS-YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRL  132 (624)
T ss_dssp             CSSSHHHHTTTSSSCTTTTTS-SCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSS
T ss_pred             HHHHHHHHHHccCchHHHHHH-HHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcH
Confidence            445555555555555555443 011123334555555555556655555555443332  12223334455555555554


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHH
Q 006012          245 DSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVG--------------------LSPKTATYA  304 (664)
Q Consensus       245 ~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------------------~~~~~~~~~  304 (664)
                      .+-      ++..   ..|+..-...+.+-|...|.++.|.-+|..+....                    -..++.||.
T Consensus       133 ~el------Eefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK  203 (624)
T 3lvg_A          133 AEL------EEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK  203 (624)
T ss_dssp             STT------TSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred             HHH------HHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence            320      0000   12333333344444444444444444443221100                    023566788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006012          305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG  384 (664)
Q Consensus       305 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  384 (664)
                      .+-.+|...+.+.-|.-.--.++-..-     -...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- 
T Consensus       204 eV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-  276 (624)
T 3lvg_A          204 EVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-  276 (624)
T ss_dssp             HHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-
T ss_pred             HHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-
Confidence            888888888887777665555543211     12246677788888888888887765321 23567777777777665 


Q ss_pred             CHHHHHHHHHHHHh-cCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 006012          385 RWESARIVLKEMEV-SHAKP------NSFIYSRILAGYRDRGEWQRTF  425 (664)
Q Consensus       385 ~~~~A~~l~~~m~~-~~~~~------~~~~~~~ll~~~~~~g~~~~a~  425 (664)
                      +.++..+.++..-. .+++-      ....|.-++-.|.+-.++|.|.
T Consensus       277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            33433333332211 12211      1224555555555555555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.23  E-value=25  Score=34.00  Aligned_cols=180  Identities=14%  Similarity=0.094  Sum_probs=92.9

Q ss_pred             cccCCH---HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCCh--HH
Q 006012          174 GRSEKL---YEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDS--SL  248 (664)
Q Consensus       174 ~~~~~~---~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~~  248 (664)
                      ...|++   .||.+          .|.++..-|.+.+++++|++++..-..               .+.+.|+...  .+
T Consensus        23 I~~G~y~~~YEAHQ----------~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL   77 (336)
T 3lpz_A           23 IAEGQPEEQYEAAQ----------ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDL   77 (336)
T ss_dssp             HHHCCHHHHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHH
T ss_pred             HhCCCCccccHHHH----------HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHH
Confidence            446777   77776          777777888888888888887544221               1222222211  12


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 006012          249 LQKLYKEIECDKIELDGQLLNDVIVGFAKAGDAS-KAMRFLGMAQ----GVG--LSPKTATYAAVITALSNSGRTIEAEA  321 (664)
Q Consensus       249 ~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~-~A~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~  321 (664)
                      +..+.+-..+.++++|......|+..+.....-+ +=..+.+.+.    +.|  -.-|......+...|.+.+++.+|..
T Consensus        78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~  157 (336)
T 3lpz_A           78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK  157 (336)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence            2333444455566666666666666655443211 1112222222    112  12356667777788888888888877


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          322 VFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME  397 (664)
Q Consensus       322 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  397 (664)
                      -|-  .  |-.+....|..++.-+.+.+...+              .+...-.+ +-.|.-.++...|..+++...
T Consensus       158 H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          158 HLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARA-VLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence            762  1  333333455444443333332111              12222222 223556677777777666554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.08  E-value=3.3  Score=41.71  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYTT  550 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~  550 (664)
                      ...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|.+.|+.+.+     .|+.|...+-..
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            3445666677778888777777776665 55677777788888888888887777776543     377777765443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.02  E-value=4.3  Score=44.39  Aligned_cols=128  Identities=13%  Similarity=0.058  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCChhh-HH-HHHHHHHhcCCCChHHHHHHHHHHHh-------CCCCCCH
Q 006012          196 YNALISACARNDD-LEKALNLMSKMRQDGYHCDFIN-YS-LVIQSLTRTNKIDSSLLQKLYKEIEC-------DKIELDG  265 (664)
Q Consensus       196 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~-~~-~ll~~~~~~g~~~~~~~~~l~~~~~~-------~~~~~d~  265 (664)
                      -.+|+..+...++ ++.|+++|+++...+  |.... +. .++..+...+. .+-.+.++..+..+       .-...+.
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~-~Ev~av~ll~~~l~~~~~~~~~l~~~~~  327 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIET-KELDMITILNETLDPLLSLLNDLPPRDA  327 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence            3455555555666 688999999998874  43332 22 22322222222 22223333333221       1111121


Q ss_pred             ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006012          266 ----------QLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELK  327 (664)
Q Consensus       266 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  327 (664)
                                ...+.-.+.+...|+++.|+++-++....- +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus       328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                      122222445667899999999998887752 3457899999999999999999998887763

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.77  E-value=4.1  Score=40.99  Aligned_cols=125  Identities=17%  Similarity=0.102  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--C-CCCChh--hHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCC
Q 006012          191 LTPLTYNALISACA---RNDDLEKALNLMSKMRQD--G-YHCDFI--NYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIE  262 (664)
Q Consensus       191 ~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~--g-~~p~~~--~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~  262 (664)
                      .|...|..++....   ..|+.+.|.+.+.+....  | +-++..  .|..             ... .-+++..     
T Consensus       110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~-------------~~r-~~l~~~~-----  170 (388)
T 2ff4_A          110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE-------------PFA-TALVEDK-----  170 (388)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH-------------HHH-HHHHHHH-----
T ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHH-------------HHH-HHHHHHH-----
Confidence            35556666665433   468999999999888764  3 112221  1111             100 1111111     


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKE-----SGLKPRTKA  337 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~  337 (664)
                        ......++..+...|++++|+..++.+.... +-+...|..+|.++.+.|+..+|++.|+.+.+     .|+.|...+
T Consensus       171 --~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          171 --VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence              1233456777888899999998888877653 45778889999999999999999998888654     477777544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=82.36  E-value=13  Score=30.36  Aligned_cols=77  Identities=10%  Similarity=-0.061  Sum_probs=54.0

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          540 GLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       540 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      +-.|+..+--.+..++.+..+.++..        +++.++..+.+.+..-....+-.|.-++.+.|++++|.++.+.+++
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~--------~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDER--------LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44678888888888888887765432        3444455555443111244566778889999999999999999998


Q ss_pred             CCCCCCH
Q 006012          620 NGLKPDV  626 (664)
Q Consensus       620 ~g~~p~~  626 (664)
                        +.|+-
T Consensus       107 --~eP~N  111 (134)
T 3o48_A          107 --HERNN  111 (134)
T ss_dssp             --TCTTC
T ss_pred             --hCCCC
Confidence              67763

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.81  E-value=16  Score=28.06  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=67.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS  217 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  217 (664)
                      .....++|..+-+|+...+.   ...+.-+-+..+...|+|.+|..+ ....-||...|-+|-.  .|.|..+++...+.
T Consensus        18 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~   92 (115)
T 2uwj_G           18 GQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLA   92 (115)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            44578999999999998872   344555556788899999999998 5566789999988866  68899999999998


Q ss_pred             HHHHcCCCCChhhH
Q 006012          218 KMRQDGYHCDFINY  231 (664)
Q Consensus       218 ~m~~~g~~p~~~~~  231 (664)
                      ++...| .|....|
T Consensus        93 ~la~sg-~p~~q~F  105 (115)
T 2uwj_G           93 GLGGSS-DPALADF  105 (115)
T ss_dssp             HHHTCS-SHHHHHH
T ss_pred             HHHhCC-CHHHHHH
Confidence            888877 4444444

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=81.69  E-value=16  Score=28.07  Aligned_cols=87  Identities=13%  Similarity=0.069  Sum_probs=67.3

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL-SQRQRLTPLTYNALISACARNDDLEKALNLMS  217 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  217 (664)
                      .....++|..+-+|+...+.   ...+.-+-+..+...|+|.+|..+ ....-||...|-+|-.  .|.|..+++...+.
T Consensus        19 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~   93 (116)
T 2p58_C           19 GNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLN   93 (116)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            45578999999999998872   344555556788899999999998 5566889999988866  67888899988888


Q ss_pred             HHHHcCCCCChhhH
Q 006012          218 KMRQDGYHCDFINY  231 (664)
Q Consensus       218 ~m~~~g~~p~~~~~  231 (664)
                      ++...| .|....|
T Consensus        94 ~la~sg-~p~~q~F  106 (116)
T 2p58_C           94 RLARSQ-DPRIQTF  106 (116)
T ss_dssp             HHTTCC-CHHHHHH
T ss_pred             HHHhCC-CHHHHHH
Confidence            888876 4444444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=81.08  E-value=9.8  Score=32.53  Aligned_cols=53  Identities=9%  Similarity=0.051  Sum_probs=29.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          517 INLLGEQERWEDVKRLLGNMRAQ-GLLPN-------VVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       517 l~~~~~~g~~~~a~~~~~~m~~~-~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      ++.+...|.++.|+-+.+.+... +..|+       ..++..+.+++...|++..|...|+
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~   87 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYT   87 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            34455556666666555554432 11222       2355566677777777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	664
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 9/199 (4%)

Query: 373 YSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMK 432
           +S L   +   G    A    ++            Y  +    ++   + R         
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRAL 230

Query: 433 SSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-TITWNTLIDCHFKCGRY 491
           S          N +   + +   +  A+  + R +   ++P     +  L +   + G  
Sbjct: 231 SLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSV 287

Query: 492 DRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP-NVVTYTT 550
             AE+ +             + N + N+  EQ   E+  RL    +A  + P     ++ 
Sbjct: 288 AEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLY--RKALEVFPEFAAAHSN 344

Query: 551 LVDIYGQSGRFDDAIECLE 569
           L  +  Q G+  +A+   +
Sbjct: 345 LASVLQQQGKLQEALMHYK 363

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 45/347 (12%), Positives = 95/347 (27%), Gaps = 21/347 (6%)

Query: 277 KAGDASKAMRFLGMAQGVGLSPKTA-TYAAVITALSNSGRTIEAEAVFEELKESGLKPR- 334
           +AGD   A R           P        + +      R   +        +    P  
Sbjct: 11  QAGDFEAAERHCMQL--WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLL 66

Query: 335 TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLK 394
            +AY+ L   Y + G L++A        R      +   +L     A      + +  + 
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126

Query: 395 EMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN 454
            ++ +            L     R E  +   +               ++ +   F    
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVFNAQG 183

Query: 455 CLHHAMAAFDRMLSEGIEPDTI-TWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTY 513
            +  A+  F++ ++  ++P+ +  +  L +   +   +DRA   +              +
Sbjct: 184 EIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH 240

Query: 514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVV-TYTTLVDIYGQSGRFDDAIECLEGLS 572
             +  +  EQ   +         RA  L P+    Y  L +   + G   +A +C     
Sbjct: 241 GNLACVYYEQGLIDLAIDTY--RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

Query: 573 DQAVNAFRVMRTDGLKPSNL-----ALNSLINAFGEDQRDAEAFAVL 614
                    +               A+     A       A A + L
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 4/118 (3%)

Query: 459 AMAAFDRMLSEGIEP-DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI 517
           A+      +     P D    ++ I+     G ++RA+E   +  +           +  
Sbjct: 15  ALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR- 71

Query: 518 NLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQA 575
           +L+   +  +D  +     +  G    +       ++   S  ++   E    + +  
Sbjct: 72  HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	664
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.12
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.07
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.02
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.96
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.78
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.36
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.25
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.23
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.16
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.11
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.09
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.08
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.03
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.02
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.9
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.85
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.81
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.79
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.56
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.5
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.45
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.43
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.41
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.3
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.21
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.2
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.17
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.17
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.99
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.88
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.8
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.57
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.32
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.02
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.39
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.35
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.3
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.72
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	86.97
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	83.58

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.4e-19  Score=181.94  Aligned_cols=382  Identities=14%  Similarity=0.100  Sum_probs=299.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006012          199 LISACARNDDLEKALNLMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKA  278 (664)
Q Consensus       199 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~  278 (664)
                      +...+.+.|++++|++.|+++.+..  |                                    -+...+..+..+|.+.
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p------------------------------------~~~~~~~~la~~~~~~   46 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--P------------------------------------DNTGVLLLLSSIHFQC   46 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--T------------------------------------TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--C------------------------------------CCHHHHHHHHHHHHHc
Confidence            4456778888888888888877642  2                                    2344556667778888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          279 GDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVV  358 (664)
Q Consensus       279 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  358 (664)
                      |++++|++.|+++.+.. +.+..+|..+...+.+.|++++|.+.+....+.... +..............+....+....
T Consensus        47 ~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  124 (388)
T d1w3ba_          47 RRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAY  124 (388)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            99999999999888754 346778888999999999999999999988876443 4555555555666666666666666


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012          359 SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP  438 (664)
Q Consensus       359 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~  438 (664)
                      ......... ...............+....+...+....... +.+...+..+...+...|++++|...+....+.. +-
T Consensus       125 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~  201 (388)
T d1w3ba_         125 VSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN  201 (388)
T ss_dssp             HHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred             ccccccccc-cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cc
Confidence            555544333 44555566667777888888888888777654 4566778888888999999999999999887754 44


Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMIN  518 (664)
Q Consensus       439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  518 (664)
                      +...+..+...+...|++++|...++...+.. ..+...+..+...|.+.|++++|...|++..+.. +-+..++..+..
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  279 (388)
T d1w3ba_         202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLAN  279 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            67788889999999999999999999988765 4567788888899999999999999999998875 556788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006012          519 LLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSL  597 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l  597 (664)
                      .+...|++++|.+.++...... +.+...+..+...+.+.|++++|++.++           +..+  +.|+ ..+|..+
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-----------~al~--~~p~~~~~~~~l  345 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYR-----------KALE--VFPEFAAAHSNL  345 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH-----------HHTT--SCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHH-----------HHHH--hCCCCHHHHHHH
Confidence            9999999999999999888763 4477888999999999999999888754           3332  3454 5678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006012          598 INAFGEDQRDAEAFAVLQYMKENGLKP-DVVTYTTLMKALIRVDK  641 (664)
Q Consensus       598 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~g~  641 (664)
                      ..+|.+.|++++|+..|+++++  +.| +...|..|+.+|.+.||
T Consensus       346 a~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         346 ASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999988  566 46789999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-18  Score=175.52  Aligned_cols=374  Identities=10%  Similarity=0.028  Sum_probs=211.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006012          139 SNSSIDLAYAVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLL----SQRQRLTPLTYNALISACARNDDLEKALN  214 (664)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~  214 (664)
                      ..|+++.|...+..+++..  |.++.++..+...|.+.|++++|...    ....+.++.+|..+...|.+.|++++|+.
T Consensus        11 ~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~   88 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence            4578999999999998876  66778888899999999999999877    33456678899999999999999999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006012          215 LMSKMRQDGYHCDFINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV  294 (664)
Q Consensus       215 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  294 (664)
                      .+....+.. +.+..............+......  .......... .................+....+...+......
T Consensus        89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAV--QAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHH--HHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccc-cccccccccccccccccccccccc--cccccccccc-cccccccccccccccccchhhhhHHHHHHhhcc
Confidence            999988764 223333333333333333332221  1111111111 222333333344444445555555555444432


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          295 GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYS  374 (664)
Q Consensus       295 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  374 (664)
                      . +.+...+..+...+...|++++|...+++..+... -+...+..+...+...|++++|...++.....+         
T Consensus       165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------  233 (388)
T d1w3ba_         165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---------  233 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---------
T ss_pred             C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---------
Confidence            2 22344444555555555555555555555444321 133444444445555555555555554444432         


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006012          375 LLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYN  454 (664)
Q Consensus       375 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  454 (664)
                                                 +.+...+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|
T Consensus       234 ---------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~  285 (388)
T d1w3ba_         234 ---------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             ---------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred             ---------------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence                                       2233344444444445555555555555444432 233445555555555556


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006012          455 CLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLG  534 (664)
Q Consensus       455 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  534 (664)
                      ++++|.+.++...... +.+...+..+...+.+.|++++|++.|++..+.. +-+..++..+...+.+.|++++|.+.++
T Consensus       286 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6666666655555432 3445556666666666666666666666665543 3345556666666666666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006012          535 NMRAQGLLPNVVTYTTLVDIYGQSGR  560 (664)
Q Consensus       535 ~m~~~~~~p~~~~~~~li~~~~~~g~  560 (664)
                      +.++.... +...|..+..+|.+.|+
T Consensus       364 ~al~l~P~-~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         364 EAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             HHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            66654211 35566666666666654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-11  Score=122.24  Aligned_cols=272  Identities=12%  Similarity=-0.002  Sum_probs=182.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      ....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|.+..+.... +...+..+...|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            4556778889999999988888764 345778888888888888888888888888775432 67778888888888888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKE  430 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  430 (664)
                      +++|.+.++........ ....+....... .                   ..+.......+..+...+.+.++...+..
T Consensus       103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         103 QRQACEILRDWLRYTPA-YAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             HHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccc-hHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            88888888888765321 110000000000 0                   00000111112223344556667777766


Q ss_pred             HHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006012          431 MKSSG-VEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPC  509 (664)
Q Consensus       431 m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  509 (664)
                      ..+.. ...+..++..+...+...|++++|...+++..+.. +-+...|..+...|.+.|++++|.+.|++.++.. +-+
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~  239 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY  239 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence            55432 23456677777788888888888888888877654 3457778888888888888888888888887764 446


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006012          510 TTTYNIMINLLGEQERWEDVKRLLGNMRAQG----------LLPNVVTYTTLVDIYGQSGRFDDAIEC  567 (664)
Q Consensus       510 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----------~~p~~~~~~~li~~~~~~g~~~~A~~~  567 (664)
                      ...|..+..+|.+.|++++|.+.|.+.++..          .......|..+-.++...|+.+.+...
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7778888888888888888888888877621          112234566677777777777665444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.7e-12  Score=122.84  Aligned_cols=243  Identities=11%  Similarity=0.020  Sum_probs=167.1

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006012          234 VIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNS  313 (664)
Q Consensus       234 ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  313 (664)
                      ....+.+.|++++  |...|+.+.+.. +-+...|..+..+|...|++++|+..|+++.+.. +-+...|..+...+...
T Consensus        25 ~g~~~~~~g~~~~--A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          25 EGLRRLQEGDLPN--AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHTTCHHH--HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHH--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence            3446778888855  559999998765 5578899999999999999999999999988754 44688899999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006012          314 GRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVL  393 (664)
Q Consensus       314 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~  393 (664)
                      |++++|.+.+++.....  |+.............                   ..+.......+..+...+...+|...+
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence            99999999999988743  221110000000000                   000011111122233445566677776


Q ss_pred             HHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 006012          394 KEMEVSHA-KPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE  472 (664)
Q Consensus       394 ~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  472 (664)
                      .+...... ..+..++..+...+...|++++|...+++..... +-+..++..+...|.+.|++++|.+.|++..+.. +
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p  237 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P  237 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence            66655432 2355667777777777788888888887766543 3456777777888888888888888888877653 3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006012          473 PDTITWNTLIDCHFKCGRYDRAEELFEEMQE  503 (664)
Q Consensus       473 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  503 (664)
                      -+...|..+..+|.+.|++++|++.|++.++
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3566788888888888888888888888765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=8.3e-08  Score=94.63  Aligned_cols=233  Identities=13%  Similarity=0.101  Sum_probs=148.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHHH
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKS----SGVE--P-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEG----IEPDTIT  477 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~  477 (664)
                      ..+...+...|++..+...+.....    .+..  + ....+..+...+...|+++.+...+.......    .......
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            3344455555666655555554332    1111  1 12344455666777788888887777766431    2223445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 006012          478 WNTLIDCHFKCGRYDRAEELFEEMQER--GYFPC----TTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLP---NVVTY  548 (664)
Q Consensus       478 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~  548 (664)
                      +..+...+...+.+.++...+.+....  .....    ...+..+...+...|++++|...+.+........   ....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            566666777888888888887766542  11111    2345556667788899999999988876543222   24566


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 006012          549 TTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-LALNSLINAFGEDQRDAEAFAVLQYMKEN----GLK  623 (664)
Q Consensus       549 ~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~  623 (664)
                      ..+..++...|++++|...++....    ..   ...+..|+. ..+..+..+|...|++++|.+.+++.++.    |..
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~----~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~  327 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNE----NA---RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI  327 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----HH---HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----HH---hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcH
Confidence            6788899999999999988763322    22   223444443 47888899999999999999999988652    322


Q ss_pred             C----CHHHHHHHHHHHHhcCCHhHHHHH
Q 006012          624 P----DVVTYTTLMKALIRVDKFHKVFSS  648 (664)
Q Consensus       624 p----~~~~~~~l~~a~~~~g~~~~A~~~  648 (664)
                      .    ....+..++..+.+.++.+++.+.
T Consensus       328 ~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         328 SHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            1    234566677788888988888654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4e-08  Score=95.66  Aligned_cols=217  Identities=8%  Similarity=0.031  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGR-TIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      ...++.+...+.+.+.+++|+++++++++.. +-+...|+....++...|+ +++|+..++...+...+ +..+|+.+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            4456667777888899999999999998864 4467788888888888764 89999999998876544 7888888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGE---  420 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~---  420 (664)
                      .+.+.|++++|++.++++.+.... +..+|..+...+.+.|++++|++.++++.+.+ +.+...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            999999999999999999886544 78889999999999999999999999998865 4566677777666655554   


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH
Q 006012          421 ---WQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE-PDTITWNTLIDCHFK  487 (664)
Q Consensus       421 ---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~  487 (664)
                         +++|++.+....+.. +.+...|+.+...+...| .+++.+.++...+.... .+...+..++..|..
T Consensus       199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence               567777777776654 445666666655554433 46666666666543222 234455555555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.9e-08  Score=95.79  Aligned_cols=225  Identities=11%  Similarity=0.055  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          300 TATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMG-YLKDAEFVVSEMERSGVLPDEHTYSLLID  378 (664)
Q Consensus       300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~  378 (664)
                      ...|+.+...+.+.+++++|+++++++++.+.. +...|+....++...| ++++|...++...+.... +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            344555555666666666666666666664322 4555666665655554 366666666666554333 4556666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006012          379 AYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHH  458 (664)
Q Consensus       379 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  458 (664)
                      .+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|++.++.+.+.. +                     
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p---------------------  177 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-V---------------------  177 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-T---------------------
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-C---------------------
Confidence            6666666666666666665543 2344555555555555555555555555544432 2                     


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          459 AMAAFDRMLSEGIEPDTITWNTLIDCHFKCGR------YDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRL  532 (664)
Q Consensus       459 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~  532 (664)
                                    .+...|+.+...+.+.+.      +++|++.+...++.. +.+...|+.+...+... ..+++.+.
T Consensus       178 --------------~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~  241 (315)
T d2h6fa1         178 --------------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNL  241 (315)
T ss_dssp             --------------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHH
T ss_pred             --------------ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHH
Confidence                          234444444444333333      456777777666654 44566666555544433 34566666


Q ss_pred             HHHHHHCCCC-CCHHHHHHHHHHHHhc--CChHHHH
Q 006012          533 LGNMRAQGLL-PNVVTYTTLVDIYGQS--GRFDDAI  565 (664)
Q Consensus       533 ~~~m~~~~~~-p~~~~~~~li~~~~~~--g~~~~A~  565 (664)
                      +....+.... .+...+..++..|...  +..+.+.
T Consensus       242 ~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         242 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            6666553222 2345555666665443  3444444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.7e-07  Score=90.78  Aligned_cols=297  Identities=11%  Similarity=0.032  Sum_probs=207.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 006012          270 DVIVGFAKAGDASKAMRFLGMAQGVGLSPK----TATYAAVITALSNSGRTIEAEAVFEELKESGL-KPR----TKAYNA  340 (664)
Q Consensus       270 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~  340 (664)
                      .....+...|++++|++++++..+.....+    ...+..+...+...|++++|.+.|++..+... .++    ...+..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            345667889999999999999887531111    34677888999999999999999998765211 111    345667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCHHHHH
Q 006012          341 LLKGYVKMGYLKDAEFVVSEMER----SGVLPD---EHTYSLLIDAYANAGRWESARIVLKEMEVSH----AKPNSFIYS  409 (664)
Q Consensus       341 li~~~~~~g~~~~a~~~~~~m~~----~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~~~  409 (664)
                      +...+...|++..+...+.....    .+....   ...+..+...+...|+++.+...+.......    .......+.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            77788899999999998887653    221111   2355667788899999999999998886542    223345666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CCHHHHHH
Q 006012          410 RILAGYRDRGEWQRTFQVLKEMKSS--GVEPD----THFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIE---PDTITWNT  480 (664)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~  480 (664)
                      .....+...+++..+...+.+....  .....    ...+..+...+...|+.+.|...+....+....   .....+..
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  256 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            6777888889999998888775441  11111    234556667788899999999999887654322   22455667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----CCHHH
Q 006012          481 LIDCHFKCGRYDRAEELFEEMQE----RGYFPC-TTTYNIMINLLGEQERWEDVKRLLGNMRAQ----GLL----PNVVT  547 (664)
Q Consensus       481 li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~----p~~~~  547 (664)
                      +...|...|++++|...+++...    .+..|+ ...+..+...+.+.|++++|.+.+++..+.    |..    -....
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~  336 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA  336 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence            88899999999999999998763    233332 346777888999999999999999887652    221    01233


Q ss_pred             HHHHHHHHHhcCChHHHHH
Q 006012          548 YTTLVDIYGQSGRFDDAIE  566 (664)
Q Consensus       548 ~~~li~~~~~~g~~~~A~~  566 (664)
                      +..++..+...++.+++.+
T Consensus       337 ~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         337 MAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHhcCCChHHHH
Confidence            4455566666676666643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=9.3e-08  Score=92.84  Aligned_cols=185  Identities=13%  Similarity=0.058  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          317 IEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEM  396 (664)
Q Consensus       317 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  396 (664)
                      ++|..+|++..+...+-+...|...+..+.+.|+.+.|..+++.+.+........+|...+..+.+.|+.+.|.++|+++
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44445555544432233344444444445555555555555555544322222334444455454555555555555554


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCH
Q 006012          397 EVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDT-FGKYNCLHHAMAAFDRMLSEGIEPDT  475 (664)
Q Consensus       397 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~  475 (664)
                      .+...                                    .+...|...... +...|+.+.|..+|+.+.+.. +.+.
T Consensus       161 l~~~~------------------------------------~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~  203 (308)
T d2onda1         161 REDAR------------------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP  203 (308)
T ss_dssp             HTSTT------------------------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH
T ss_pred             HHhCC------------------------------------CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhH
Confidence            44321                                    122222222111 222344455555555544431 2234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          476 ITWNTLIDCHFKCGRYDRAEELFEEMQERG-YFP--CTTTYNIMINLLGEQERWEDVKRLLGNMRA  538 (664)
Q Consensus       476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  538 (664)
                      ..|...+..+.+.|+++.|..+|++..... ..|  ....|...+.--...|+.+.+..+.+++.+
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555555555555555555544432 111  123444444444445555555555554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=2.1e-07  Score=90.28  Aligned_cols=185  Identities=10%  Similarity=0.065  Sum_probs=142.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 006012          384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAF  463 (664)
Q Consensus       384 g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  463 (664)
                      +..++|..+|++..+...+.+...|...+......|+++.|..+|+.+.+........+|...+..+.+.|+++.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34566777777777655555666777777777788888888888888776543333557888888888999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 006012          464 DRMLSEGIEPDTITWNTLIDC-HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQG-L  541 (664)
Q Consensus       464 ~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~  541 (664)
                      ..+.+.+. .+...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+...|+.+.|..+|++.++.. .
T Consensus       158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            99987653 344444444333 334689999999999999874 5678899999999999999999999999998864 3


Q ss_pred             CCC--HHHHHHHHHHHHhcCChHHHHHHHhh
Q 006012          542 LPN--VVTYTTLVDIYGQSGRFDDAIECLEG  570 (664)
Q Consensus       542 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~  570 (664)
                      .|+  ...|...+..-...|+.+.+.++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            332  56889999888899999999987653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.2e-07  Score=89.29  Aligned_cols=198  Identities=9%  Similarity=-0.060  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHF  486 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  486 (664)
                      +|..+..+|.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.. +-+..++..+..+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            55566677777788888888887777653 4567778888888888888888888888888754 234567777888888


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----hH
Q 006012          487 KCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGR----FD  562 (664)
Q Consensus       487 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~  562 (664)
                      ..|++++|.+.|+...+.. +.+......+..++.+.+..+....+..........+.  .+. ++..+.....    .+
T Consensus       117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLME  192 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHHH
Confidence            8888888888888887765 34455544445555566665656555555555322221  111 2222221111    11


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006012          563 DAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLINAFGEDQRDAEAFAVLQYMKENGLKPD  625 (664)
Q Consensus       563 ~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  625 (664)
                      .+...+..           ...  ..|+ ..+|..+...|...|++++|++.|++.+.  ..|+
T Consensus       193 ~~~~~~~~-----------~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~  241 (259)
T d1xnfa_         193 RLKADATD-----------NTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH  241 (259)
T ss_dssp             HHHHHCCS-----------HHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred             HHHHHHHH-----------hhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC
Confidence            11111111           000  0122 23677789999999999999999999987  4554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=5.3e-08  Score=91.81  Aligned_cols=96  Identities=13%  Similarity=-0.107  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006012          302 TYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYA  381 (664)
Q Consensus       302 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  381 (664)
                      +|..+...|.+.|++++|.+.|++.++.... +..+|+.+..++.+.|++++|...|+++.+.... +..++..+...|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            4444555555555555555555555543221 4455555555555555555555555555554322 3445555555555


Q ss_pred             HcCCHHHHHHHHHHHHhc
Q 006012          382 NAGRWESARIVLKEMEVS  399 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~  399 (664)
                      ..|++++|...|+...+.
T Consensus       117 ~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh
Confidence            555555555555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=2.5e-08  Score=98.22  Aligned_cols=210  Identities=6%  Similarity=-0.067  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 006012          350 YLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG--RWESARIVLKEMEVSHAKPNSFIYS-RILAGYRDRGEWQRTFQ  426 (664)
Q Consensus       350 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~  426 (664)
                      ++++|..+++...+...+ +...|..+..++...+  ++++|...++++.+.. +.+...+. .....+...+.+++|+.
T Consensus        88 ~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          88 LVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence            345555555555554322 4445555544444443  3556666666655543 22333332 23344455566666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006012          427 VLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGY  506 (664)
Q Consensus       427 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  506 (664)
                      .++.+.+.. +-+...|+.+...+.+.|++++|...+....+..  |.   .......+...+..+++...+....... 
T Consensus       166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-  238 (334)
T d1dcea1         166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-  238 (334)
T ss_dssp             HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence            666655543 3455556666666666665555444333322210  00   1112233444556666666666666554 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 006012          507 FPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLE  569 (664)
Q Consensus       507 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  569 (664)
                      +++...+..+...+...++.++|...+.+....+.. +..++..+..+|...|++++|++.++
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~  300 (334)
T d1dcea1         239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFS  300 (334)
T ss_dssp             CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344444555555666666777777776666554321 34556666667777777776666644

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.7e-08  Score=99.55  Aligned_cols=266  Identities=7%  Similarity=-0.056  Sum_probs=186.0

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH----------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006012          277 KAGDASKAMRFLGMAQGVGLSPK-TATYAAVITALS----------NSGRTIEAEAVFEELKESGLKPRTKAYNALLKGY  345 (664)
Q Consensus       277 ~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~----------~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~  345 (664)
                      +.+..++|+++++.+.+..  |+ ...|+..-..+.          ..|++++|+.+++...+...+ +...|..+..++
T Consensus        41 ~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~  117 (334)
T d1dcea1          41 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL  117 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHH
Confidence            3344588999999888753  54 445554433332          334578899999998876433 677787777777


Q ss_pred             HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006012          346 VKMG--YLKDAEFVVSEMERSGVLPDEHTYSL-LIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQ  422 (664)
Q Consensus       346 ~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~  422 (664)
                      ...+  +.++|...++.+.+.... +...+.. ....+...+..++|+..++.....+ +-+...|+.+...+.+.|+++
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHH
Confidence            7765  478999999998876433 5555544 4466777899999999999888765 457888888888998888877


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006012          423 RTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQ  502 (664)
Q Consensus       423 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  502 (664)
                      +|...+....+.  .|.   ...+...+...+..+++...+....... +++...+..+...+...|+.++|...+.+..
T Consensus       196 ~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  269 (334)
T d1dcea1         196 DSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELE  269 (334)
T ss_dssp             CSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            765544433221  111   1123334455566677788888777654 3445556677778888899999999999988


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 006012          503 ERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPN-VVTYTTLVDIYG  556 (664)
Q Consensus       503 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~  556 (664)
                      +.+ +.+...|..+...+...|++++|.+.++++++.  .|+ ...|..|...+.
T Consensus       270 ~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         270 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             TTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             hhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            775 445677888899999999999999999999985  454 445555544443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.4e-05  Score=70.73  Aligned_cols=125  Identities=16%  Similarity=-0.009  Sum_probs=96.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL  351 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  351 (664)
                      ...+...|++++|++.|+.+.    +|+..+|..+..++.+.|++++|++.|++.++.+.. +...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence            445678899999999988653    577888888999999999999999999998886543 678888899999999999


Q ss_pred             HHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006012          352 KDAEFVVSEMERSGVL--------------P-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHA  401 (664)
Q Consensus       352 ~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~  401 (664)
                      ++|.+.|++.......              . ...++..+..+|.+.|++++|.+.++.......
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999998887653110              0 124555667778888888888888887766543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.7e-05  Score=75.54  Aligned_cols=167  Identities=11%  Similarity=-0.012  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGV----GLSPK-TATYAAVITALSNSGRTIEAEAVFEELKESGLK-----PRTK  336 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----p~~~  336 (664)
                      .|......|...|++++|.+.|.++.+.    +-+++ ..+|..+..+|.+.|++++|.+.+++..+....     ....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            4666677788888888888888776542    11111 346777777788888888887777765542100     0123


Q ss_pred             HHHHHHHHHHh-cCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-----
Q 006012          337 AYNALLKGYVK-MGYLKDAEFVVSEMER----SGVLP-DEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNS-----  405 (664)
Q Consensus       337 ~~~~li~~~~~-~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-----  405 (664)
                      ++..+...|.. .|++++|.+.+++..+    .+..+ -..++..+...|...|++++|+..|++..........     
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            44455555533 4777777777766542    11111 1234555666666666666666666665543211110     


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          406 -FIYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       406 -~~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                       ..+...+..+...++++.|...++...+
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             1122333344455555555555555544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.4e-05  Score=69.26  Aligned_cols=125  Identities=11%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006012          413 AGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYD  492 (664)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  492 (664)
                      ..+...|+++.|++.|.++.    +|+..++..+...|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence            34556666666666665432    4555666666666667777777777777666654 345666666777777777777


Q ss_pred             HHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006012          493 RAEELFEEMQERGY--------------FP-CTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLL  542 (664)
Q Consensus       493 ~A~~~~~~m~~~~~--------------~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  542 (664)
                      +|++.|++.+....              .. ...++..+..++.+.|++++|.+.+.+..+....
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            77777766654210              00 1244555666777888888888888777765443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.3e-05  Score=66.95  Aligned_cols=102  Identities=16%  Similarity=0.051  Sum_probs=74.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      ..+.|.+.|++++|+..|+++.+.. +.+...|..+..++.+.|++++|.+.|++.++.... +..+|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence            4556778888888888888887764 446777888888888888888888888888776432 66778888888888888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSL  375 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~  375 (664)
                      +++|...+++..+.... +...+..
T Consensus        94 ~~eA~~~~~~a~~~~p~-~~~~~~~  117 (159)
T d1a17a_          94 FRAALRDYETVVKVKPH-DKDAKMK  117 (159)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-CHHHHHH
Confidence            88888888887775422 3444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.7e-05  Score=61.68  Aligned_cols=91  Identities=12%  Similarity=0.025  Sum_probs=63.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL  351 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  351 (664)
                      ...+.+.|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..+....+.+. .+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence            455667777777777777776653 44566677777777777777777777777776543 3666677777777777777


Q ss_pred             HHHHHHHHHHHHC
Q 006012          352 KDAEFVVSEMERS  364 (664)
Q Consensus       352 ~~a~~~~~~m~~~  364 (664)
                      ++|...++...+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777777665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=2.7e-05  Score=74.07  Aligned_cols=212  Identities=11%  Similarity=0.006  Sum_probs=106.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006012          280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKES----GLKP-RTKAYNALLKGYVKMGYLKDA  354 (664)
Q Consensus       280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a  354 (664)
                      ++++|.++|..+               ...|...|++++|.+.|.+..+.    +-++ -..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A   96 (290)
T d1qqea_          32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (290)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence            456666665543               55677888888888888887652    1111 134677777777788888887


Q ss_pred             HHHHHHHHHC----CC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006012          355 EFVVSEMERS----GV-LPDEHTYSLLIDAYAN-AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVL  428 (664)
Q Consensus       355 ~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  428 (664)
                      .+.++...+.    |. .....++..+...|.. .|++++|+..+++..+..                            
T Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~----------------------------  148 (290)
T d1qqea_          97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY----------------------------  148 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----------------------------
T ss_pred             HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH----------------------------
Confidence            7777665431    10 0012233333333422 355555555554442210                            


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-----H-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006012          429 KEMKSSGVEP-DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPD-----T-ITWNTLIDCHFKCGRYDRAEELFEEM  501 (664)
Q Consensus       429 ~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~-~~~~~li~~~~~~g~~~~A~~~~~~m  501 (664)
                         ...+..+ -..++..+...+.+.|++++|...|+++.+......     . ..+..++..+...|+++.|...+++.
T Consensus       149 ---~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         149 ---AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             ---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             ---HhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence               0011011 123344455556666666666666666554321111     0 12233344455566666666666666


Q ss_pred             HHCCCC-C---CHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 006012          502 QERGYF-P---CTTTYNIMINLLGE--QERWEDVKRLLGNMR  537 (664)
Q Consensus       502 ~~~~~~-p---~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~  537 (664)
                      .+.... +   .......++.++..  .+.+++|...|+++.
T Consensus       226 ~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            554211 1   12233445555443  234666666665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=0.0026  Score=58.68  Aligned_cols=62  Identities=10%  Similarity=0.026  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHc
Q 006012          265 GQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSN----SGRTIEAEAVFEELKES  329 (664)
Q Consensus       265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~  329 (664)
                      +..+..|...+.+.|++++|++.|++..+.|   +..++..|...|..    ..+...|...+....+.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence            3444455555555666666666666665543   34444444444443    34455555555554443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.4e-05  Score=60.65  Aligned_cols=91  Identities=13%  Similarity=0.077  Sum_probs=61.3

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006012          447 IDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERW  526 (664)
Q Consensus       447 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~  526 (664)
                      ...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            344556667777777777666554 3456667777777777777777777777776665 55666677777777777777


Q ss_pred             HHHHHHHHHHHHC
Q 006012          527 EDVKRLLGNMRAQ  539 (664)
Q Consensus       527 ~~a~~~~~~m~~~  539 (664)
                      ++|...+++.++.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777777664

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=0.0035  Score=57.76  Aligned_cols=226  Identities=10%  Similarity=-0.014  Sum_probs=165.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDAEFVVSEMERSGVLPDEHTYS  374 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~  374 (664)
                      |+..+..|...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|...+....+.+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            45567778888889999999999999998865   55666667777776    568899999999988765   455555


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          375 LLIDAYAN----AGRWESARIVLKEMEVSHAKPNSFIYSRILAGYR----DRGEWQRTFQVLKEMKSSGVEPDTHFYNVM  446 (664)
Q Consensus       375 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  446 (664)
                      .+...+..    ..+.+.|...++.....+.   ......+...+.    .......+...+......   .+...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence            66555544    4678899999998877653   233333333333    244677888888877664   466677777


Q ss_pred             HHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          447 IDTFGK----YNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMIN  518 (664)
Q Consensus       447 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  518 (664)
                      ...|..    ..+...+...++...+.|   +......+...|..    ..++++|+..|+...+.|   +...+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~  222 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence            777764    567888888888888754   56666667666665    568999999999999887   4566777777


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHCCCC
Q 006012          519 LLGE----QERWEDVKRLLGNMRAQGLL  542 (664)
Q Consensus       519 ~~~~----~g~~~~a~~~~~~m~~~~~~  542 (664)
                      .|.+    .++.++|.+.|++..+.|..
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            7765    44788999999999888754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.09  E-value=0.0016  Score=61.96  Aligned_cols=134  Identities=12%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          264 DGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       264 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      +..-...+.+.|.+.|.++.|..+|..+..         |..++..+.+.+++..|.+++.+..      +..+|..+..
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~   77 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF   77 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence            333334444555555555555555554332         3445555555555555555544321      3445555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDR  418 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~  418 (664)
                      .+.+......+.     +...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus        78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            555544433221     111222223334444555555555555555555544322 133444455555555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.8e-05  Score=63.48  Aligned_cols=103  Identities=8%  Similarity=-0.063  Sum_probs=79.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006012          305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG  384 (664)
Q Consensus       305 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  384 (664)
                      .....|.+.|++++|+..|++.++... -+...|..+..+|...|++++|...|+..++.... +..+|..+..+|...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            345677888999999999988888653 37788888888888888999998888888876533 6678888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHH
Q 006012          385 RWESARIVLKEMEVSHAKPNSFIYSR  410 (664)
Q Consensus       385 ~~~~A~~l~~~m~~~~~~~~~~~~~~  410 (664)
                      ++++|...+++..... +-+...+..
T Consensus        93 ~~~eA~~~~~~a~~~~-p~~~~~~~~  117 (159)
T d1a17a_          93 KFRAALRDYETVVKVK-PHDKDAKMK  117 (159)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence            8888888888887764 233444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=4.5e-05  Score=67.79  Aligned_cols=96  Identities=13%  Similarity=-0.022  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          299 KTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLID  378 (664)
Q Consensus       299 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  378 (664)
                      +...+......+.+.|++++|+..|++.++... -+...|+.+..+|.+.|++++|...++..++.... +..+|..+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence            333444444444455555555555544444321 24444444555555555555555555554443211 3444444555


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 006012          379 AYANAGRWESARIVLKEM  396 (664)
Q Consensus       379 ~~~~~g~~~~A~~l~~~m  396 (664)
                      +|.+.|++++|+..|++.
T Consensus        81 ~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            555555555555555444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=3.8e-05  Score=68.24  Aligned_cols=99  Identities=14%  Similarity=-0.052  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006012          263 LDGQLLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALL  342 (664)
Q Consensus       263 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li  342 (664)
                      |+...+......|.+.|++++|++.|+++.... +.+...|..+..+|.+.|++++|+..|+..++... -+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence            455566677888999999999999999988765 55788999999999999999999999999987533 2678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 006012          343 KGYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       343 ~~~~~~g~~~~a~~~~~~m~~  363 (664)
                      .+|.+.|++++|...|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999998765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.90  E-value=5.1e-05  Score=60.25  Aligned_cols=88  Identities=7%  Similarity=-0.061  Sum_probs=55.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYL  351 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  351 (664)
                      ...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..|++..+... .+...+..+...|...|+.
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCH
Confidence            445566677777777777666543 23466666666666666677777666666665432 2456666666666666666


Q ss_pred             HHHHHHHHHH
Q 006012          352 KDAEFVVSEM  361 (664)
Q Consensus       352 ~~a~~~~~~m  361 (664)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.85  E-value=9e-05  Score=58.74  Aligned_cols=90  Identities=14%  Similarity=0.007  Sum_probs=62.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006012          305 AVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAG  384 (664)
Q Consensus       305 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  384 (664)
                      .+...+.+.|++++|...|++.++.... +...|..+..++.+.|++++|...+++..+.... +..+|..+...|...|
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence            3455666777777777777777765432 5677777777777777777777777777665433 5667777777777777


Q ss_pred             CHHHHHHHHHHH
Q 006012          385 RWESARIVLKEM  396 (664)
Q Consensus       385 ~~~~A~~l~~~m  396 (664)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            777777777664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=8.6e-05  Score=59.79  Aligned_cols=95  Identities=17%  Similarity=0.103  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRT---IEAEAVFEELKESGLKPR-TKAYNALLKG  344 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~p~-~~~~~~li~~  344 (664)
                      ..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++.   ++|+.+|+++...+..|+ ..++..|..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            345666777778888888888777755 45677777777777765544   457777777766543333 2356667777


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 006012          345 YVKMGYLKDAEFVVSEMERS  364 (664)
Q Consensus       345 ~~~~g~~~~a~~~~~~m~~~  364 (664)
                      |.+.|++++|.+.|+++.+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh
Confidence            77888888888888877775

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.2e-05  Score=60.26  Aligned_cols=108  Identities=13%  Similarity=0.036  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCH-H
Q 006012          514 NIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSN-L  592 (664)
Q Consensus       514 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~-~  592 (664)
                      ..+++.+...+++++|.+.|++....+. .+..++..+..++.+.++.++.        ++|+.+|++....+..|+. .
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~--------~~Ai~~l~~~l~~~~~~~~~~   73 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDI--------RKGIVLLEELLPKGSKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHH--------HHHHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHH--------HHHHHHHHHHHhccCCchHHH
Confidence            3566777788888888888888888653 3678888888888876665432        2334445555543333332 3


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          593 ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTL  632 (664)
Q Consensus       593 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  632 (664)
                      +|..+..+|.+.|++++|+++|+++++  +.|+..-...+
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l  111 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL  111 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence            678899999999999999999999999  66765443333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0011  Score=56.83  Aligned_cols=111  Identities=14%  Similarity=-0.011  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYV  346 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~  346 (664)
                      .+......+.+.|++++|++.|++..........              ....-......+       ...+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence            3445566788889999999999877653100000              000000000000       0124455555566


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012          347 KMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       347 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  399 (664)
                      +.|++++|...++..++..+. ++.+|..+..+|...|++++|+..|++..+.
T Consensus        74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            666666666666665554322 5555666666666666666666666666554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00082  Score=57.55  Aligned_cols=129  Identities=13%  Similarity=0.017  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGV-EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCH  485 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  485 (664)
                      .+......+.+.|++++|+..|.+.+.... .+.               ..+.-......+       -..+|+.+..+|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~---------------~~~~~~~~~~~~-------~~~~~~nla~~y   72 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS---------------FSNEEAQKAQAL-------RLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc---------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence            344555667777788888877777654210 000               000000111111       123577788889


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006012          486 FKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSG  559 (664)
Q Consensus       486 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  559 (664)
                      .+.|++++|+..++..++.+ +.+...|..+..++...|++++|...|++.++.++. +..+...+.....+.+
T Consensus        73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHH
T ss_pred             Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999886 568889999999999999999999999999885432 5555555555444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.50  E-value=0.00025  Score=59.07  Aligned_cols=127  Identities=9%  Similarity=-0.053  Sum_probs=74.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006012          485 HFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE----------QERWEDVKRLLGNMRAQGLLPNVVTYTTLVDI  554 (664)
Q Consensus       485 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  554 (664)
                      |-+.+.+++|++.|+...+.. +.+...+..+..++..          .+.+++|...+++.++.+.. +..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence            344556777777777777665 5566666666666653          34457888888888886433 67788888888


Q ss_pred             HHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006012          555 YGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPSNLALNSLINAFGEDQRDAEAFAVLQYMKENG  621 (664)
Q Consensus       555 ~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  621 (664)
                      |...|++........+..++|.+.|++..+  +.|+...|...+..+      .+|.+++.+..+.|
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            877665432222222333455555665554  355555444333322      34555555555544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.0008  Score=54.45  Aligned_cols=95  Identities=17%  Similarity=0.142  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-----HHHHHHH
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLK-PR-----TKAYNAL  341 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~-----~~~~~~l  341 (664)
                      +..+...|.+.|++++|++.|++.++.+ +.+...|..+..+|.+.|++++|++.++++++.... +.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3446667788888888888888887764 446777888888888888888888888887652111 11     2356666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 006012          342 LKGYVKMGYLKDAEFVVSEMER  363 (664)
Q Consensus       342 i~~~~~~g~~~~a~~~~~~m~~  363 (664)
                      ...+...+++++|.+.|+....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            6677777777777777776654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00095  Score=54.00  Aligned_cols=107  Identities=11%  Similarity=0.053  Sum_probs=63.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHH
Q 006012          515 IMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLA  593 (664)
Q Consensus       515 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~  593 (664)
                      .+...+.+.|++++|.+.|.+.++.+.. +...+..+..+|.+.|++++|++.++..++    +-....  ...+. ..+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~~~~~--~~~~~~a~~   81 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE----VGRENR--EDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHST--TCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH----hCcccH--HHHHHHHHH
Confidence            4455566666666666666666665322 466666666666666666666665442221    110000  00011 136


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006012          594 LNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYT  630 (664)
Q Consensus       594 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  630 (664)
                      |..+...+...+++++|+++|++...  ..++.....
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~  116 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLK  116 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHHH
Confidence            77788888889999999999998877  345554443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.43  E-value=0.0019  Score=53.96  Aligned_cols=119  Identities=12%  Similarity=-0.052  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          407 IYSRILAGYRDRGEWQRTFQVLKEMKSSGV----EPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLI  482 (664)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  482 (664)
                      .+......+.+.|++.+|+..|.+....-.    .++....                    ....    .....+|+.+.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nla   74 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNLA   74 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhHH
Confidence            445556677777888888887777665310    0111100                    0000    01234677788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006012          483 DCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTL  551 (664)
Q Consensus       483 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  551 (664)
                      .+|.+.|++++|++.+++.++.+ +.+..+|..+..++...|++++|...|.+..+.++. +..+...+
T Consensus        75 ~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l  141 (153)
T d2fbna1          75 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY  141 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             HHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            88999999999999999998876 668889999999999999999999999999885422 34444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=8.2e-05  Score=76.55  Aligned_cols=134  Identities=11%  Similarity=-0.060  Sum_probs=69.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 006012          384 GRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAF  463 (664)
Q Consensus       384 g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  463 (664)
                      +.++.++..++...+.. +++...+..+...+.+.|+.+.|...+....+..   ...++..+...+...|++++|...|
T Consensus       100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y  175 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence            34444444443332221 2344455666666777777777776665544321   1245666777788888888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006012          464 DRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQ  523 (664)
Q Consensus       464 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~  523 (664)
                      .+..+.. +-+...|+.|...|...|+..+|...|.+.+... +|-..++..|...+.+.
T Consensus       176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence            8887654 3455778888888888888888888888887776 56777777777666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.41  E-value=0.0041  Score=51.86  Aligned_cols=108  Identities=15%  Similarity=-0.027  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGL----SPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      +..-...+.+.|++.+|+..|.++...-.    .++....                    .....    ....+|+.+..
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~~----~~~~~~~Nla~   75 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKKN----IEISCNLNLAT   75 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhhh----HHHHHHhhHHH
Confidence            34445667788999999988888775210    0111100                    00000    01245666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSH  400 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  400 (664)
                      +|.+.|++++|++.++..++..+. +..+|..+..+|...|++++|+..|++..+..
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            777777777777777777665432 56777777777777777777777777776654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.35  E-value=0.0012  Score=56.27  Aligned_cols=82  Identities=10%  Similarity=0.006  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006012          474 DTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVD  553 (664)
Q Consensus       474 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  553 (664)
                      ....|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|.+.|.+.++.... +..+...+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            34567778888999999999999999998876 667888999999999999999999999999986422 5555555554


Q ss_pred             HHHh
Q 006012          554 IYGQ  557 (664)
Q Consensus       554 ~~~~  557 (664)
                      +..+
T Consensus       154 ~~~~  157 (169)
T d1ihga1         154 VKQK  157 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.0019  Score=55.03  Aligned_cols=127  Identities=10%  Similarity=0.023  Sum_probs=74.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006012          269 NDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKM  348 (664)
Q Consensus       269 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~  348 (664)
                      ......+.+.|++++|++.|+++.+.            ...........+...    +.    +.....|..+..++.+.
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK----LQ----PVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHHhh
Confidence            34566678889999999988876531            000000000000000    00    11344566667777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006012          349 GYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRD  417 (664)
Q Consensus       349 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~  417 (664)
                      |++++|+..++..++.... +..+|..+..+|.+.|++++|+..|++..+.. +.+......+..+..+
T Consensus        91 ~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK  157 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            7777777777777765433 56677777777777777777777777776654 2345555555444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.6e-05  Score=76.83  Aligned_cols=119  Identities=12%  Similarity=-0.085  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006012          438 PDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMI  517 (664)
Q Consensus       438 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll  517 (664)
                      ++...+..+...+.+.|+.+.|...+....+..   ...++..+...+...|++++|...|++..+.. +-+...|+.+.
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg  193 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLA  193 (497)
T ss_dssp             -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence            445667777788888999999888877765421   23567778889999999999999999999886 66778999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006012          518 NLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRF  561 (664)
Q Consensus       518 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  561 (664)
                      ..+...|+..+|...|.+.+... .|-..++..|...+.+..+.
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999998864 46788899998888765543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.21  E-value=0.0039  Score=52.97  Aligned_cols=108  Identities=14%  Similarity=0.047  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006012          267 LLNDVIVGFAKAGDASKAMRFLGMAQGV---GLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLK  343 (664)
Q Consensus       267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~  343 (664)
                      .+......+.+.|++.+|+..|+.....   ....+...                 ......+       ....|+.+..
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nla~   72 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNLAM   72 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhHHH
Confidence            3455667788999999999999876531   11111100                 0000000       1223444555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012          344 GYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       344 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  399 (664)
                      +|.+.|++++|+..++...+... .+..+|..+..+|...|++++|...|++....
T Consensus        73 ~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          73 CYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55555555555555555554432 24555555555555555555555555555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.20  E-value=0.0031  Score=53.61  Aligned_cols=82  Identities=11%  Similarity=0.008  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          476 ITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIY  555 (664)
Q Consensus       476 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  555 (664)
                      ..|+.+..+|.+.|++++|+..++..++.+ +.+...|..+..++...|++++|...+.+++.... .+..+...+....
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            356677888999999999999999998876 67888999999999999999999999999998642 2455555554444


Q ss_pred             HhcC
Q 006012          556 GQSG  559 (664)
Q Consensus       556 ~~~g  559 (664)
                      .+.+
T Consensus       143 ~~~~  146 (168)
T d1kt1a1         143 KKAK  146 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.17  E-value=0.0037  Score=53.68  Aligned_cols=123  Identities=10%  Similarity=0.094  Sum_probs=87.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006012          410 RILAGYRDRGEWQRTFQVLKEMKSS--GVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK  487 (664)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  487 (664)
                      .........|++++|.+.|......  |...            .......-+...-..+..    .....+..+...+.+
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l------------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVL------------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT------------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCccccc------------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            3445678889999999999888764  2110            000000011111111111    123567788999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006012          488 CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRA-----QGLLPNVVTYT  549 (664)
Q Consensus       488 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~  549 (664)
                      .|++++|+..++++++.. +-+...|..++.+|.+.|+..+|++.|+++.+     .|+.|...+-.
T Consensus        80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~  145 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  145 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            999999999999999987 67899999999999999999999999998744     58999887643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.17  E-value=0.1  Score=49.09  Aligned_cols=258  Identities=11%  Similarity=0.092  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006012          268 LNDVIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK  347 (664)
Q Consensus       268 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~  347 (664)
                      |..++..|.+.+++..|.+++.+.      -+..+|..+...+.+.....-+     .+.......+......++..|-.
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~  111 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQD  111 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHH
Confidence            345666667777777777776544      2566777777777776655443     22222333455556677788888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006012          348 MGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQV  427 (664)
Q Consensus       348 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  427 (664)
                      .|.+++...+++...... ..+...++.++..|++.+. ++.   .+.+......   .-...++..|.+.+-+.++.-+
T Consensus       112 ~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl---~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~L  183 (336)
T d1b89a_         112 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKM---REHLELFWSR---VNIPKVLRAAEQAHLWAELVFL  183 (336)
T ss_dssp             TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHH---HHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHH---HHHHHhcccc---CCHHHHHHHHHHcCChHHHHHH
Confidence            888888888887765432 3466677778877777542 333   3333221111   1122334455555555554444


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006012          428 LKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYF  507 (664)
Q Consensus       428 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  507 (664)
                      +..+...     ......++.   +..+..+.....+-..+.   .|...|-..+..|..+. ++-...++..+...-  
T Consensus       184 y~~~~~~-----~~A~~~~i~---~~~~~~~~~~f~e~~~k~---~N~e~~~~~i~~yL~~~-p~~i~~lL~~v~~~~--  249 (336)
T d1b89a_         184 YDKYEEY-----DNAIITMMN---HPTDAWKEGQFKDIITKV---ANVELYYRAIQFYLEFK-PLLLNDLLMVLSPRL--  249 (336)
T ss_dssp             HHHTTCH-----HHHHHHHHH---STTTTCCHHHHHHHHHHC---SSTHHHHHHHHHHHHHC-GGGHHHHHHHHGGGC--
T ss_pred             HHhcCCH-----HHHHHHHHH---cchhhhhHHHHHHHHHcc---CChHHHHHHHHHHHHcC-HHHHHHHHHHhccCC--
Confidence            4433210     001111111   111111111111112221   23333444444444432 333333333332221  


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006012          508 PCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAI  565 (664)
Q Consensus       508 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  565 (664)
                       |.   ..+++.+.+.+++.....++......|   +..+.+++.+.|...++++.-.
T Consensus       250 -d~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~  300 (336)
T d1b89a_         250 -DH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALR  300 (336)
T ss_dssp             -CH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -CH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence             11   334455566667777777777665544   4578889999999998865533

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0047  Score=52.98  Aligned_cols=123  Identities=19%  Similarity=0.085  Sum_probs=80.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006012          271 VIVGFAKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGY  350 (664)
Q Consensus       271 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  350 (664)
                      ........|++++|.+.|......-  +...        +........+...-..+...    ....+..+...+.+.|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence            3356778899999999999988631  1100        00000101111111112211    23566778888888888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hcCCCCCHHHH
Q 006012          351 LKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEME-----VSHAKPNSFIY  408 (664)
Q Consensus       351 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~~~~~~~~~~  408 (664)
                      +++|...++.+.+.... +...|..++.+|.+.|+.++|++.|+++.     +.|+.|...+-
T Consensus        83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            88888888888876543 78888888888888888888888888873     35788887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.99  E-value=0.00066  Score=62.68  Aligned_cols=122  Identities=11%  Similarity=-0.010  Sum_probs=74.0

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006012          276 AKAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAE  355 (664)
Q Consensus       276 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  355 (664)
                      .+.|++++|++.+++.++.. +.|...+..+...++..|++++|.+.|+...+.... +...+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence            45688888888888888765 557788888888888888888888888888775322 3444444444433332222221


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006012          356 FVVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVS  399 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  399 (664)
                      .-.......+-.++...+......+...|+.++|..++++..+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            11111011111112333344455667778888888888777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.91  E-value=0.0015  Score=54.02  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=84.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006012          520 LGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKPS-NLALNSLI  598 (664)
Q Consensus       520 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li  598 (664)
                      |.+.+.+++|.+.+++.++..+. +..++..+..+|...+++..+.+.. +..++|+..|++..+.  .|+ ..+|..+.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~-~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG   82 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAK-QMIQEAITKFEEALLI--DPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence            45667799999999999987533 7889999999998888777666544 4567788888888874  454 56888899


Q ss_pred             HHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006012          599 NAFGEDQ-----------RDAEAFAVLQYMKENGLKPDVVTYTTLMKAL  636 (664)
Q Consensus       599 ~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~  636 (664)
                      .+|...|           .+++|.+.|++.++  +.|+...+..-+..+
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence            8887655           36889999999998  678766665544444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.88  E-value=0.0071  Score=50.50  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=64.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCC
Q 006012          519 LLGEQERWEDVKRLLGNMRAQGL-LP----------NVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGL  587 (664)
Q Consensus       519 ~~~~~g~~~~a~~~~~~m~~~~~-~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~  587 (664)
                      .+.+.|++++|.+.|.+.++... .|          ....|+.+..+|.+.|++++|++.++    +++.++.+....  
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~----~al~~~~~~~~~--   91 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD----KALHYFNRRGEL--   91 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHCCT--
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhh----hhhhcccccccc--
Confidence            34455667777776666665211 11          13577888999999999999987754    444444443322  


Q ss_pred             CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          588 KPS-----NLALNSLINAFGEDQRDAEAFAVLQYMKE  619 (664)
Q Consensus       588 ~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~  619 (664)
                      .++     ...|..+..+|...|++++|+..|++.++
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222     12567789999999999999999999875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.80  E-value=0.0011  Score=61.22  Aligned_cols=122  Identities=7%  Similarity=-0.087  Sum_probs=66.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012          310 LSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTYSLLIDAYANAGRWESA  389 (664)
Q Consensus       310 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  389 (664)
                      ..+.|++++|+..+++.++... -|...+..+...++..|++++|.+.++...+.... +...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence            3456788888888888777643 26777778888888888888888888877765322 234444444333333222222


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          390 RIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       390 ~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                      ..-.......+.+++...+......+...|+.++|.+.+.++.+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            11111000011112222333344555666667777666666554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.36  E-value=0.032  Score=46.25  Aligned_cols=56  Identities=18%  Similarity=0.013  Sum_probs=32.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCC-CCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006012          272 IVGFAKAGDASKAMRFLGMAQGVGL-SPK----------TATYAAVITALSNSGRTIEAEAVFEELK  327 (664)
Q Consensus       272 i~~~~~~g~~~~A~~~~~~~~~~g~-~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~  327 (664)
                      ...+...|++++|++.|++.++..- .|+          ...|+.+..+|.+.|++++|...+++.+
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            3445566777777777777664210 011          2455566666666666666666665554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.074  Score=39.52  Aligned_cols=65  Identities=11%  Similarity=-0.083  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006012          266 QLLNDVIVGFAKAGDASKAMRFLGMAQGVG-----LSPK-TATYAAVITALSNSGRTIEAEAVFEELKESG  330 (664)
Q Consensus       266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~  330 (664)
                      ..+-.+...+.+.|++++|+..|++..+..     ..++ ..+++.+..++.+.|++++|++.|+++++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            334456667777888888888877665421     1112 4566677777777777777777777776653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.085  Score=39.18  Aligned_cols=75  Identities=8%  Similarity=-0.041  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006012          300 TATYAAVITALSNSGRTIEAEAVFEELKESG-----LKPR-TKAYNALLKGYVKMGYLKDAEFVVSEMERSGVLPDEHTY  373 (664)
Q Consensus       300 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  373 (664)
                      ...+-.+...+.+.|++++|...|++..+..     ..++ ..+++.|..++.+.|++++|...++++++..+. +..++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHH
Confidence            3445566777778888888888877765421     1112 456777777777777777777777777765432 34444


Q ss_pred             HH
Q 006012          374 SL  375 (664)
Q Consensus       374 ~~  375 (664)
                      +.
T Consensus        84 ~N   85 (95)
T d1tjca_          84 GN   85 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.02  E-value=0.52  Score=36.07  Aligned_cols=139  Identities=18%  Similarity=0.123  Sum_probs=74.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006012          382 NAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEPDTHFYNVMIDTFGKYNCLHHAMA  461 (664)
Q Consensus       382 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  461 (664)
                      -.|.+++..+++.+....   .+..-||.++--....-+-+..+++++.+-+.   .|          ...++++.....
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHH
Confidence            345566666666655542   23344444444444444444444444443221   11          122333333333


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          462 AFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGL  541 (664)
Q Consensus       462 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  541 (664)
                      .+-.+-     .+....+..++.+.+.|+-++-.++++++.+.+ .+++.....+..+|.+.|...++.+++.++.+.|+
T Consensus        78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            332221     233445556666777777777777777766655 66677777777777777777777777777777665


Q ss_pred             C
Q 006012          542 L  542 (664)
Q Consensus       542 ~  542 (664)
                      +
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.82  E-value=0.45  Score=37.55  Aligned_cols=109  Identities=12%  Similarity=-0.013  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006012          280 DASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVK----MGYLKDAE  355 (664)
Q Consensus       280 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~  355 (664)
                      |+++|++.|++..+.|   +...+..+..  ....+.++|.+.+++..+.|   +......|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            5667777777766655   2222222221  22344556666665555543   33344444444433    23455555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 006012          356 FVVSEMERSGVLPDEHTYSLLIDAYAN----AGRWESARIVLKEMEVS  399 (664)
Q Consensus       356 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~  399 (664)
                      ++|++..+.|   ++.....|...|..    ..+.++|.++|++..+.
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            5555555543   33344444444433    23455555555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.39  E-value=0.79  Score=35.97  Aligned_cols=81  Identities=6%  Similarity=-0.103  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 006012          454 NCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFK----CGRYDRAEELFEEMQERGYFPCTTTYNIMINLLGE----QER  525 (664)
Q Consensus       454 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~  525 (664)
                      .+.++|.+.+++..+.|   +......|...|..    ..+.++|+++|++..+.|   +......|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            44556666666655543   33344444444443    234666777777666665   23344444444443    345


Q ss_pred             HHHHHHHHHHHHHCC
Q 006012          526 WEDVKRLLGNMRAQG  540 (664)
Q Consensus       526 ~~~a~~~~~~m~~~~  540 (664)
                      .++|.+++++..+.|
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            666666666666655

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.35  E-value=0.78  Score=35.06  Aligned_cols=138  Identities=14%  Similarity=0.062  Sum_probs=68.2

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006012          277 KAGDASKAMRFLGMAQGVGLSPKTATYAAVITALSNSGRTIEAEAVFEELKESGLKPRTKAYNALLKGYVKMGYLKDAEF  356 (664)
Q Consensus       277 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  356 (664)
                      -.|.+++..++..+...   +.+..-||.+|--....-+-+...++++.+-+.   -|.          ..++++.....
T Consensus        14 ldG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence            34666666666665554   234555565555555555555555555444321   111          11122222222


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006012          357 VVSEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGV  436 (664)
Q Consensus       357 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~  436 (664)
                      .+-.+-     .+....+..++.+.++|+-++-.+++..+.+. -++++...-.+..+|.+.|...++-+++.+.-+.|+
T Consensus        78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            221111     12233444555566666666666666665443 255566666666666666666666666666665553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=8.3  Score=37.07  Aligned_cols=349  Identities=10%  Similarity=0.034  Sum_probs=183.9

Q ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHcccCCHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006012          148 AVVSWLQKHNLCYSYELLYSILIHALGRSEKLYEAFLLSQRQRLTPLTYNALISACARNDDLEKALNLMSKMRQDGYHCD  227 (664)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  227 (664)
                      ++...+.+....|....+...-+..+++.+++.+........+.++..-.....+....|+..+|...+..+-..| ...
T Consensus        57 ~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~  135 (450)
T d1qsaa1          57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQ  135 (450)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCC
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCC
Confidence            3444455554333334445555677888888887776655566677766778888899999999999988887765 334


Q ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------------
Q 006012          228 FINYSLVIQSLTRTNKIDSSLLQKLYKEIECDKIELDGQLLNDVIVGFAKAGDASKAMRFLGMAQGV-------------  294 (664)
Q Consensus       228 ~~~~~~ll~~~~~~g~~~~~~~~~l~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------  294 (664)
                      ...+..++..+.+.|.+......+-+..+.                   ..|++..|..+...+...             
T Consensus       136 p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l-------------------~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~  196 (450)
T d1qsaa1         136 PNACDKLFSVWRASGKQDPLAYLERIRLAM-------------------KAGNTGLVTVLAGQMPADYQTIASAIISLAN  196 (450)
T ss_dssp             CTHHHHHHHHHHHTTCSCHHHHHHHHHHHH-------------------HTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------------------HcCChhhHHHHHhhCChhHHHHHHHHHHHHh
Confidence            455666666666666655443333233222                   223333333322211000             


Q ss_pred             ----------CCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHH
Q 006012          295 ----------GLSPKTATYAAVITALSN--SGRTIEAEAVFEELKESGLKPRTKAYNALLK----GYVKMGYLKDAEFVV  358 (664)
Q Consensus       295 ----------g~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~  358 (664)
                                ....+......+..++.+  ..+.+.|..++......... +..-+..+-.    .....+..+.+...+
T Consensus       197 ~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~  275 (450)
T d1qsaa1         197 NPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWR  275 (450)
T ss_dssp             CGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHH
T ss_pred             ChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence                      011222222222333322  24556666666665543221 2222222221    222334455666666


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006012          359 SEMERSGVLPDEHTYSLLIDAYANAGRWESARIVLKEMEVSHAKPNSFIYSRILAGYRDRGEWQRTFQVLKEMKSSGVEP  438 (664)
Q Consensus       359 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~  438 (664)
                      +.....+.  +.....-.+......+++..+...+..|... ......-..-+..++...|+.+.|...|.....   .+
T Consensus       276 ~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~  349 (450)
T d1qsaa1         276 DDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QR  349 (450)
T ss_dssp             HHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SC
T ss_pred             Hhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CC
Confidence            55554432  3333333444455666777777776665322 112233334455666677777777777776653   12


Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CC-CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006012          439 DTHFYNVMIDTFGKYNCLHHAMAAFDRMLSEGI--EP-DTIT---WNTLIDCHFKCGRYDRAEELFEEMQERGYFPCTTT  512 (664)
Q Consensus       439 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~-~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t  512 (664)
                      +  -|.-|...-  .|..-.       +.....  .+ ....   --..+..+...|+...|...|..+...   .+...
T Consensus       350 ~--fYG~LAa~~--Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~  415 (450)
T d1qsaa1         350 G--FYPMVAAQR--IGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTE  415 (450)
T ss_dssp             S--HHHHHHHHH--TTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHH
T ss_pred             C--hHHHHHHHH--cCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHH
Confidence            2  222221111  110000       000000  00 0000   112345677889999999999988754   25667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          513 YNIMINLLGEQERWEDVKRLLGNMR  537 (664)
Q Consensus       513 ~~~ll~~~~~~g~~~~a~~~~~~m~  537 (664)
                      ...+.....+.|.++.|+....+..
T Consensus       416 ~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         416 QAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCChhHHHHHHHHHH
Confidence            7788888899999999998777664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.72  E-value=3  Score=31.87  Aligned_cols=75  Identities=9%  Similarity=-0.080  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006012          541 LLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQAVNAFRVMRTDGLKP-SN-LALNSLINAFGEDQRDAEAFAVLQYMK  618 (664)
Q Consensus       541 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~a~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~  618 (664)
                      -.|...+-..+..++.+....+.        .++++.++....+.  .| +. ..+-.|.-+|.+.|++++|.++++.++
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d--------~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVND--------ERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHH--------HHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHH--------HHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34667777778888887765543        23344455555543  23 32 466778888999999999999999999


Q ss_pred             HCCCCCCHH
Q 006012          619 ENGLKPDVV  627 (664)
Q Consensus       619 ~~g~~p~~~  627 (664)
                      +  +.|+..
T Consensus       101 ~--ieP~n~  107 (124)
T d2pqrb1         101 E--HERNNK  107 (124)
T ss_dssp             H--HCTTCH
T ss_pred             c--cCCCcH
Confidence            8  677643

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=86.97  E-value=14  Score=35.41  Aligned_cols=206  Identities=8%  Similarity=0.019  Sum_probs=106.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006012          419 GEWQRTFQVLKEMKSSGVEPDTHFYNV----MIDTFGKYNCLHHAMAAFDRMLSEGIEPDTITWNTLIDCHFKCGRYDRA  494 (664)
Q Consensus       419 g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  494 (664)
                      .+.+.+..++....... ..+......    +...+...+..+.+...+......+  .+.......+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence            35566666666554432 112221211    1122233455556666665555443  2333333344444556666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhhHHH
Q 006012          495 EELFEEMQERGYFPCTTTYNIMINLLGEQERWEDVKRLLGNMRAQGLLPNVVTYTTLVDIYGQSGRFDDAIECLEGLSDQ  574 (664)
Q Consensus       495 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  574 (664)
                      ...++.|.... .-.....--+.+++...|+.++|...+..+...   ++  -|.-|..  .+.|..-..          
T Consensus       305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~~~~~----------  366 (450)
T d1qsaa1         305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYEL----------  366 (450)
T ss_dssp             HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCCC----------
T ss_pred             HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCCC----------
Confidence            66666654321 122333445566666677777777776666531   33  1222211  112211000          


Q ss_pred             HHHHHHHHHHCCC--CCCH-H---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006012          575 AVNAFRVMRTDGL--KPSN-L---ALNSLINAFGEDQRDAEAFAVLQYMKENGLKPDVVTYTTLMKALIRVDKFHKVFSS  648 (664)
Q Consensus       575 a~~~~~~m~~~g~--~p~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~a~~~~g~~~~A~~~  648 (664)
                              .....  .+.. .   .-..-+..+...|+..+|...+..+...   .+......+.....+.|.++.|+..
T Consensus       367 --------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a  435 (450)
T d1qsaa1         367 --------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQA  435 (450)
T ss_dssp             --------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             --------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHH
Confidence                    00000  0000 0   0112356677899999999999988753   3566777888889999999999987


Q ss_pred             HHHHHHhh
Q 006012          649 YLFFNIYK  656 (664)
Q Consensus       649 ~~~~~~~~  656 (664)
                      ....+.+.
T Consensus       436 ~~~~~~~d  443 (450)
T d1qsaa1         436 TIAGKLWD  443 (450)
T ss_dssp             HHHTTCTT
T ss_pred             HHHHHccC
Confidence            76544443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.58  E-value=4.6  Score=30.75  Aligned_cols=25  Identities=12%  Similarity=0.162  Sum_probs=11.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006012          409 SRILAGYRDRGEWQRTFQVLKEMKS  433 (664)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~m~~  433 (664)
                      ..+.-+|.+.|++++|...++.+.+
T Consensus        77 Y~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          77 YYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3334444444444444444444443