Citrus Sinensis ID: 006015

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660----
MKKQRCSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLLEDTVP
cccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccEEEccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEcccccccccHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccccEEEcccccccccHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHcccccccEEEccccccccHHHHHHccccccccEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEcccccccHHHHHHccccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEccEEcccccccccccccccccEEEEcccEEEEEEccHHHHHHHccccc
ccccccccccccHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEcccccccccHHHHHHHccccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHccccEEEEEccccEEEccHHHHHHHHHHccc
mkkqrcsekinlfDLLSEEIVFIILDclntnpfdkksfSLVCKSFYITeskhrkklkplrqehlPAVLIRysntthldlslyprindhsLFAISKITSFTlqsidlsrswgfsssgLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKeirsldlsylpitnkclpsilKLQHLEDLILegcfgiddcSLAALKHRCKSLKAldmsscqnishlglssltssigglqqltlahgspvTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLkelslskcdgvtdeglsYVATkhrdlrklditccrkisdvsithvtssctgltslrmesctlvPREAFVLIGQRCrfleeldltdneiddeglksisrcsklsVLKLGICLNITGEGLAHVGMCCsklkeldlyrcvgitdsgiltiacgcpdleMINIAYLKditdssllslskcsrlntfesrgcplitsLGLAAIAVGCKQLIKLDIKwchnindvgmlplahfsqnlrQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLLEDTVP
mkkqrcsekinlfdLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITeskhrkklkplrqEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKElslskcdgvtDEGLsyvatkhrdlrklDITCCrkisdvsithvtssctgltslRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFqaeldpkswkllledtvp
MKKQRCSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDlsrswgfsssgllsltlsCKNLKEIDISNAVSlkdagaaalaeaknleklWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNishlglssltssigglqqlTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDssllslsKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHlkglslnglaaallacggITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLLEDTVP
********KINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLL*****
*************DLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLLEDT**
MKKQRCSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLLEDTVP
********KINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLLEDTVP
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MKKQRCSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLLEDTVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query664 2.2.26 [Sep-21-2011]
Q8RWU5665 F-box/LRR-repeat protein yes no 1.0 0.998 0.655 0.0
Q9C5D2610 F-box/LRR-repeat protein no no 0.679 0.739 0.279 8e-37
Q5R3Z8423 F-box/LRR-repeat protein no no 0.444 0.697 0.278 1e-27
Q9UKC9423 F-box/LRR-repeat protein yes no 0.444 0.697 0.278 1e-27
Q8BH16423 F-box/LRR-repeat protein yes no 0.444 0.697 0.284 2e-27
Q708Y0623 EIN3-binding F-box protei no no 0.793 0.845 0.252 3e-27
Q8NEE6735 F-box/LRR-repeat protein no no 0.632 0.571 0.251 9e-27
Q96IG2436 F-box/LRR-repeat protein no no 0.463 0.706 0.275 3e-26
Q58DG6436 F-box/LRR-repeat protein yes no 0.463 0.706 0.275 3e-26
Q9CZV8436 F-box/LRR-repeat protein no no 0.463 0.706 0.275 5e-26
>sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/665 (65%), Positives = 525/665 (78%), Gaps = 1/665 (0%)

Query: 1   MKKQRCSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLR 60
           MKK +    +  FDLLSEE+VFIILD ++ NP D KSFSL CKSFY  ESKHR  LKPLR
Sbjct: 1   MKKVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLR 60

Query: 61  QEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSL 120
            ++LP +L RY NTT LDL+  PR+ D++L  +  ++  TL+S+DLSRS  FS++GLL L
Sbjct: 61  SDYLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGPTLRSLDLSRSGSFSAAGLLRL 120

Query: 121 TLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKL 180
            L C NL EID+SNA  ++DA AA +AEA++LE+L +GRCKM+TDMG+GCIAVGCK L  
Sbjct: 121 ALKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNT 180

Query: 181 ISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGID 240
           +SLKWC+GVGDLGVGL+AVKCK+IR+LDLSYLPIT KCL  ILKLQHLE+L+LEGCFG+D
Sbjct: 181 VSLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVD 240

Query: 241 DCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAH-GSPVTLSIANGL 299
           D SL +L+H CKSLK LD SSCQN++H GL+SL S  G LQ+L L+H  S ++L  A+ L
Sbjct: 241 DDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSL 300

Query: 300 KKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKL 359
           KK+S LQSI+LDG  VT  GLKAIG  C SLKE+SLSKC  VTDEGLS +  K +DLRKL
Sbjct: 301 KKVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKL 360

Query: 360 DITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEID 419
           DITCCRK+S VSIT + +SC  L SL+MESC+LV REAF LIGQ+CR LEELDLTDNEID
Sbjct: 361 DITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEID 420

Query: 420 DEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIAC 479
           DEGLKSIS C  LS LKLGICLNIT +GL+++GM CS L+ELDLYR VGITD GI TIA 
Sbjct: 421 DEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQ 480

Query: 480 GCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLD 539
           GC  LE INI+Y +DITD SL+SLSKCS L TFESRGCP ITS GLAAIAV CK+L K+D
Sbjct: 481 GCIHLETINISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVD 540

Query: 540 IKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLN 599
           +K C +IND G+L LAHFSQNL+QIN+S T+VT+VGLLSLA+I CLQN+ +++  GL  +
Sbjct: 541 LKKCPSINDAGLLALAHFSQNLKQINVSDTAVTEVGLLSLANIGCLQNIAVVNSSGLRPS 600

Query: 600 GLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLL 659
           G+AAALL CGG+ K KL A+ + LLP  LI HL+ARGC F W++   QAELDPK WK  L
Sbjct: 601 GVAAALLGCGGLRKAKLHASLRSLLPLSLIHHLEARGCAFLWKDNTLQAELDPKYWKQQL 660

Query: 660 EDTVP 664
           E+  P
Sbjct: 661 EEMAP 665

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 Back     alignment and function description
>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 Back     alignment and function description
>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 Back     alignment and function description
>sp|Q708Y0|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1 Back     alignment and function description
>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3 Back     alignment and function description
>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 Back     alignment and function description
>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 Back     alignment and function description
>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query664
255571507669 F-box protein, atfbl3, putative [Ricinus 1.0 0.992 0.765 0.0
224140535668 predicted protein [Populus trichocarpa] 0.995 0.989 0.775 0.0
224091068666 predicted protein [Populus trichocarpa] 0.995 0.992 0.761 0.0
225439576663 PREDICTED: F-box/LRR-repeat protein 3 [V 0.998 1.0 0.763 0.0
356506506669 PREDICTED: F-box/LRR-repeat protein 3-li 0.998 0.991 0.677 0.0
449483569667 PREDICTED: F-box/LRR-repeat protein 3-li 0.998 0.994 0.684 0.0
449439837667 PREDICTED: F-box/LRR-repeat protein 3-li 0.998 0.994 0.683 0.0
356495085671 PREDICTED: F-box/LRR-repeat protein 3-li 0.998 0.988 0.662 0.0
225434419668 PREDICTED: F-box/LRR-repeat protein 3-li 0.992 0.986 0.645 0.0
297745808702 unnamed protein product [Vitis vinifera] 0.992 0.938 0.645 0.0
>gi|255571507|ref|XP_002526701.1| F-box protein, atfbl3, putative [Ricinus communis] gi|223534001|gb|EEF35723.1| F-box protein, atfbl3, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/669 (76%), Positives = 582/669 (86%), Gaps = 5/669 (0%)

Query: 1   MKKQRCSE-----KINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKK 55
           MK+Q+  E       NLFDLLSEEI+F IL+ L+TNP D+KSFSLVCKSFY  ESKHRK 
Sbjct: 1   MKRQKTIEFNTINNNNLFDLLSEEIIFSILEFLDTNPLDRKSFSLVCKSFYTIESKHRKI 60

Query: 56  LKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSS 115
           LKPLRQEHLP +L RY + THLDLSL PRIND SL  IS     +L+SIDLSRS  FS +
Sbjct: 61  LKPLRQEHLPRILNRYPHVTHLDLSLCPRINDSSLTIISNSCKNSLKSIDLSRSRFFSYN 120

Query: 116 GLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGC 175
           GL SL L+CKNL  ID+SNA  L+DA A+A+AEAKNLE+LW+GRCK++TD+GVGCIAVGC
Sbjct: 121 GLTSLALNCKNLVNIDLSNATELRDAAASAVAEAKNLERLWLGRCKLITDIGVGCIAVGC 180

Query: 176 KNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEG 235
           K L+LISLKWCLGV DLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKL+ LEDL+LEG
Sbjct: 181 KKLRLISLKWCLGVTDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLKSLEDLVLEG 240

Query: 236 CFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSI 295
           CFGIDD SL A KH CKSLK LDMSSCQNISH+GLSSL    GGL+QLTLA+GSPVTL++
Sbjct: 241 CFGIDDESLTAFKHGCKSLKTLDMSSCQNISHVGLSSLIGGAGGLEQLTLAYGSPVTLAL 300

Query: 296 ANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRD 355
           AN LK+LS+LQS+KLDG ++T AGLKA+G+WC+SLKELSLSKC GVTDEGLS + TKHRD
Sbjct: 301 ANSLKQLSVLQSVKLDGCMITSAGLKALGNWCISLKELSLSKCVGVTDEGLSCLVTKHRD 360

Query: 356 LRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTD 415
           LRKLDITCCRKI+DVSI+H+TSSCT LTSLRMESCTLV REAFVLIGQRC+ LEELDLTD
Sbjct: 361 LRKLDITCCRKITDVSISHITSSCTNLTSLRMESCTLVSREAFVLIGQRCQLLEELDLTD 420

Query: 416 NEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGIL 475
           NEIDDEGLKS+S C KL+ LKLGICLNI+ EGLA+VG  C++L ELDLYR  G+TD+GIL
Sbjct: 421 NEIDDEGLKSVSSCLKLASLKLGICLNISDEGLAYVGKHCTRLTELDLYRSAGVTDTGIL 480

Query: 476 TIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQL 535
            IA  C DLEMIN++Y +DITDSSL+SLSKC +LNTFESRGCPLITSLGLAAIAVGCKQ+
Sbjct: 481 AIASSCLDLEMINMSYCRDITDSSLISLSKCKKLNTFESRGCPLITSLGLAAIAVGCKQI 540

Query: 536 IKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKG 595
            KLDIK CH+I+D GMLPLA FSQNLRQINLSY+S+TDVGLLSLASISCLQNMT+LHLKG
Sbjct: 541 TKLDIKKCHSIDDAGMLPLALFSQNLRQINLSYSSITDVGLLSLASISCLQNMTVLHLKG 600

Query: 596 LSLNGLAAALLACGGITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSW 655
           L+ +GLAAALLACGG+TKVKL A+FK LLPQPL +HL+ARGCVF+WR+K  QAELDPK W
Sbjct: 601 LTPSGLAAALLACGGLTKVKLHASFKSLLPQPLFEHLEARGCVFEWRDKEIQAELDPKCW 660

Query: 656 KLLLEDTVP 664
           KL LED +P
Sbjct: 661 KLQLEDMIP 669

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224140535|ref|XP_002323638.1| predicted protein [Populus trichocarpa] gi|222868268|gb|EEF05399.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224091068|ref|XP_002309168.1| predicted protein [Populus trichocarpa] gi|222855144|gb|EEE92691.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439576|ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera] gi|297735597|emb|CBI18091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356506506|ref|XP_003522022.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449483569|ref|XP_004156627.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439837|ref|XP_004137692.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495085|ref|XP_003516411.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|225434419|ref|XP_002277506.1| PREDICTED: F-box/LRR-repeat protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745808|emb|CBI15864.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query664
TAIR|locus:2149805665 AT5G01720 "AT5G01720" [Arabido 1.0 0.998 0.584 9.4e-201
TAIR|locus:2143320642 AT5G27920 "AT5G27920" [Arabido 0.947 0.979 0.346 4.5e-98
TAIR|locus:505006471610 AT4G15475 "AT4G15475" [Arabido 0.617 0.672 0.269 8.3e-35
UNIPROTKB|D6RDY7444 FBXL7 "F-box/LRR-repeat protei 0.426 0.637 0.32 9.1e-31
TAIR|locus:2145512623 EBF2 "EIN3-binding F box prote 0.631 0.672 0.275 2.6e-30
MGI|MGI:1919429423 Fbxl2 "F-box and leucine-rich 0.408 0.640 0.311 3.3e-30
RGD|1562243422 Fbxl2 "F-box and leucine-rich 0.408 0.642 0.311 4.2e-30
UNIPROTKB|Q9UKC9423 FBXL2 "F-box/LRR-repeat protei 0.408 0.640 0.301 1.9e-29
UNIPROTKB|Q5R3Z8423 FBXL2 "F-box/LRR-repeat protei 0.408 0.640 0.301 1.9e-29
UNIPROTKB|F1NNA4376 FBXL7 "Uncharacterized protein 0.426 0.752 0.328 5.4e-29
TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
 Identities = 389/665 (58%), Positives = 463/665 (69%)

Query:     1 MKKQRCSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLR 60
             MKK +    +  FDLLSEE+VFIILD ++ NP D KSFSL CKSFY  ESKHR  LKPLR
Sbjct:     1 MKKVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLR 60

Query:    61 QEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDXXXXXXXXXXXXXXX 120
              ++LP +L RY NTT LDL+  PR+ D++L  +  ++  TL+S+D               
Sbjct:    61 SDYLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGPTLRSLDLSRSGSFSAAGLLRL 120

Query:   121 XXXCKNLKEIDISNAVSXXXXXXXXXXXXXXXXXXWMGRCKMVTDMGVGCIAVGCKNLKL 180
                C NL EID+SNA                     +GRCKM+TDMG+GCIAVGCK L  
Sbjct:   121 ALKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNT 180

Query:   181 ISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGID 240
             +SLKWC+GVGDLGVGL+AVKCK+IR+LDLSYLPIT KCL  ILKLQHLE+L+LEGCFG+D
Sbjct:   181 VSLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVD 240

Query:   241 DCSLAALKHRCKSLKALDMSSCQNXXXXXXXXXXXXXXXXXXXTLAH-GSPVTLSIANGL 299
             D SL +L+H CKSLK LD SSCQN                    L+H  S ++L  A+ L
Sbjct:   241 DDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSL 300

Query:   300 KKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKL 359
             KK+S LQSI+LDG  VT  GLKAIG  C SLKE+SLSKC  VTDEGLS +  K +DLRKL
Sbjct:   301 KKVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKL 360

Query:   360 DITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEID 419
             DITCCRK+S VSIT + +SC  L SL+MESC+LV REAF LIGQ+CR LEELDLTDNEID
Sbjct:   361 DITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEID 420

Query:   420 DEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIAC 479
             DEGLKSIS C  LS LKLGICLNIT +GL+++GM CS L+ELDLYR VGITD GI TIA 
Sbjct:   421 DEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQ 480

Query:   480 GCPDLEMINIAYLKDITDXXXXXXXKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLD 539
             GC  LE INI+Y +DITD       KCS L TFESRGCP ITS GLAAIAV CK+L K+D
Sbjct:   481 GCIHLETINISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVD 540

Query:   540 IKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHXXXXXXX 599
             +K C +IND G+L LAHFSQNL+QIN+S T+VT+VGLLSLA+I CLQN+ +++       
Sbjct:   541 LKKCPSINDAGLLALAHFSQNLKQINVSDTAVTEVGLLSLANIGCLQNIAVVNSSGLRPS 600

Query:   600 XXXXXXXXXXXITKVKLQAAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDPKSWKLLL 659
                        + K KL A+ + LLP  LI HL+ARGC F W++   QAELDPK WK  L
Sbjct:   601 GVAAALLGCGGLRKAKLHASLRSLLPLSLIHHLEARGCAFLWKDNTLQAELDPKYWKQQL 660

Query:   660 EDTVP 664
             E+  P
Sbjct:   661 EEMAP 665
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS;TAS
GO:0009407 "toxin catabolic process" evidence=RCA
TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|D6RDY7 FBXL7 "F-box/LRR-repeat protein 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2145512 EBF2 "EIN3-binding F box protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNA4 FBXL7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWU5FBL3_ARATHNo assigned EC number0.65561.00.9984yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query664
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 3e-16
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 3e-15
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 2e-13
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 3e-09
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 5e-06
cd00116319 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo 1e-05
cd00116319 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo 2e-05
smart0036726 smart00367, LRR_CC, Leucine-rich repeat - CC (cyst 0.003
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information 
 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 13/201 (6%)

Query: 331 KELSLSKCDGVTDEGLSYVATK-HRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMES 389
               L K   +T   +S +    H  L  L++  C            S+C  L  L +  
Sbjct: 4   LLFILHKLGQITQSNISQLLRILHSGLEWLELYMCPIS--DPPLDQLSNCNKLKKLILPG 61

Query: 390 CTLVPREAFVLIGQRCRFLEELDLTDNE-IDDEGLKSISR-CSKLSVLKLGI---CLNIT 444
             L+  E  + + Q C  L+ LDL   E I D G+ +++  C KL  + LG       IT
Sbjct: 62  SKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLIT 121

Query: 445 GEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD----LEMINIAYLKDITDSSL 500
              L+ +G  C+ L+ +    C  +TD G+  +A GC      L + N   L D +  ++
Sbjct: 122 DVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAI 180

Query: 501 LSLSKCSRLNTFESRGCPLIT 521
           L+ +    L+  E RGCPLIT
Sbjct: 181 LASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 664
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
KOG4341483 consensus F-box protein containing LRR [General fu 99.97
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.93
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.93
KOG4341483 consensus F-box protein containing LRR [General fu 99.92
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.91
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.87
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.86
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.86
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.85
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.84
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.81
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.78
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.78
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.76
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.72
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.56
KOG4237498 consensus Extracellular matrix protein slit, conta 99.53
KOG4237 498 consensus Extracellular matrix protein slit, conta 99.51
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.46
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.42
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.41
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 99.39
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.35
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.33
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.31
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.18
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 99.18
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.04
KOG0617264 consensus Ras suppressor protein (contains leucine 99.04
KOG0617264 consensus Ras suppressor protein (contains leucine 98.95
KOG2982418 consensus Uncharacterized conserved protein [Funct 98.9
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.84
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.79
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.78
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.78
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 98.76
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 98.74
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 98.64
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.63
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 98.61
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 98.58
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 98.49
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.47
KOG2982418 consensus Uncharacterized conserved protein [Funct 98.39
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 98.37
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.32
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 98.16
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 98.12
KOG3864221 consensus Uncharacterized conserved protein [Funct 98.03
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 98.0
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.96
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.94
KOG3864221 consensus Uncharacterized conserved protein [Funct 97.9
PLN03150623 hypothetical protein; Provisional 97.8
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 97.77
PLN03150623 hypothetical protein; Provisional 97.72
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.56
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 97.52
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 97.39
KOG4308478 consensus LRR-containing protein [Function unknown 97.37
KOG2123 388 consensus Uncharacterized conserved protein [Funct 97.33
KOG0531 414 consensus Protein phosphatase 1, regulatory subuni 97.31
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.27
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 97.25
KOG4308478 consensus LRR-containing protein [Function unknown 97.24
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 97.19
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.09
KOG2123388 consensus Uncharacterized conserved protein [Funct 97.06
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 97.0
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 96.94
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 96.86
PRK15386 426 type III secretion protein GogB; Provisional 96.63
PRK15386 426 type III secretion protein GogB; Provisional 96.61
KOG0281499 consensus Beta-TrCP (transducin repeats containing 96.1
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 95.88
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 95.83
KOG2997366 consensus F-box protein FBX9 [General function pre 95.7
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 95.49
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 94.59
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 92.57
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 92.39
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 92.22
PF13013109 F-box-like_2: F-box-like domain 91.75
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 91.28
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 90.24
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 89.29
KOG3763585 consensus mRNA export factor TAP/MEX67 [RNA proces 86.69
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 85.46
KOG3763 585 consensus mRNA export factor TAP/MEX67 [RNA proces 83.32
smart0036926 LRR_TYP Leucine-rich repeats, typical (most popula 82.45
smart0037026 LRR Leucine-rich repeats, outliers. 82.45
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 81.44
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-39  Score=368.77  Aligned_cols=520  Identities=18%  Similarity=0.141  Sum_probs=393.6

Q ss_pred             CCCCcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcC
Q 006015           71 YSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAK  150 (664)
Q Consensus        71 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  150 (664)
                      ..+++.|+++++ .+.......+.  .+++|+.|++++|......+ ..++..+++|+.|++++|...+.. +  ...++
T Consensus        68 ~~~v~~L~L~~~-~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip-~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~  140 (968)
T PLN00113         68 SSRVVSIDLSGK-NISGKISSAIF--RLPYIQTINLSNNQLSGPIP-DDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIP  140 (968)
T ss_pred             CCcEEEEEecCC-CccccCChHHh--CCCCCCEEECCCCccCCcCC-hHHhccCCCCCEEECcCCcccccc-C--ccccC
Confidence            346888998864 34433333343  68899999999987543333 233447899999999988433322 1  24578


Q ss_pred             CCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcce
Q 006015          151 NLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLED  230 (664)
Q Consensus       151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  230 (664)
                      +|++|++++|. ++.. ++.....+++|++|++++|...+..+...  .++++|++|++++|.+.+..|..++++++|+.
T Consensus       141 ~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        141 NLETLDLSNNM-LSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSL--TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCCEEECcCCc-cccc-CChHHhcCCCCCEEECccCcccccCChhh--hhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            99999999987 4322 23334568999999999986555555443  48899999999999998888999999999999


Q ss_pred             EeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEe
Q 006015          231 LILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKL  310 (664)
Q Consensus       231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  310 (664)
                      |++++|......+ ..++. +++|++|++++|.....  ++..+..+++|+.|+++++ .+.+..+..+..+++|+.|++
T Consensus       217 L~L~~n~l~~~~p-~~l~~-l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        217 IYLGYNNLSGEIP-YEIGG-LTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDL  291 (968)
T ss_pred             EECcCCccCCcCC-hhHhc-CCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEEC
Confidence            9999987654333 34666 89999999998875433  5667788999999999988 677777888889999999999


Q ss_pred             cCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCC
Q 006015          311 DGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESC  390 (664)
Q Consensus       311 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  390 (664)
                      ++|.+....+..+. .+++|+.|++.+|....  ..+..+..+++|+.|++++|.....  ++..+..+++|+.|++++|
T Consensus       292 s~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        292 SDNSLSGEIPELVI-QLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGE--IPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             cCCeeccCCChhHc-CCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCc--CChHHhCCCCCcEEECCCC
Confidence            99988877777776 78999999999886322  3455567889999999998874322  3445567899999999987


Q ss_pred             CCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCC
Q 006015          391 TLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGIT  470 (664)
Q Consensus       391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~  470 (664)
                      ... ......+. .+++|+.|++++|.+.+..+..+..+++|+.|++++| .++...+..+. .+++|+.|++++|. ++
T Consensus       367 ~l~-~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~Ls~N~-l~  441 (968)
T PLN00113        367 NLT-GEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEFT-KLPLVYFLDISNNN-LQ  441 (968)
T ss_pred             eeE-eeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhHh-cCCCCCEEECcCCc-cc
Confidence            652 22233344 6789999999999998888888999999999999999 88766555555 78999999999987 54


Q ss_pred             hHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhh
Q 006015          471 DSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVG  550 (664)
Q Consensus       471 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~  550 (664)
                      . .++..+..+++|+.|++++|. +.+..+..+ ..++|+.|++++| .++.. ++..+.++++|+.|++++|+. .  +
T Consensus       442 ~-~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~~-~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~--~  513 (968)
T PLN00113        442 G-RINSRKWDMPSLQMLSLARNK-FFGGLPDSF-GSKRLENLDLSRN-QFSGA-VPRKLGSLSELMQLKLSENKL-S--G  513 (968)
T ss_pred             C-ccChhhccCCCCcEEECcCce-eeeecCccc-ccccceEEECcCC-ccCCc-cChhhhhhhccCEEECcCCcc-e--e
Confidence            2 344445678999999999998 654444333 4588999999999 45442 566778899999999999953 2  2


Q ss_pred             HHH-HHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH-HHHHHHhCCcccceeee-hhhcccCChh
Q 006015          551 MLP-LAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG-LAAALLACGGITKVKLQ-AAFKQLLPQP  627 (664)
Q Consensus       551 ~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~-~~~~~~~~~~L~~l~l~-n~~~~~~p~~  627 (664)
                      ..| ....+++|+.|++++|.+++..|..++.   +++|+.+++++|.+.+ +|..+.++++|+.++++ |.+.+.+|..
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSE---MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhC---cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            222 2334799999999999999888877655   4556688899999985 56666679999999999 9999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] Back     alignment and domain information
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily Back     alignment and domain information
>smart00370 LRR Leucine-rich repeats, outliers Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query664
2p1m_B594 Tir1-ask1 Complex Structure Length = 594 1e-06
3ogk_B592 Structure Of Coi1-Ask1 In Complex With Coronatine A 7e-06
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 172/428 (40%), Gaps = 73/428 (17%)
Query: 202 KEIRSLDLSYLPITNKCLPSILK-LQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMS 260
           +EIR   L  + +T+ CL  I K  ++ + L+L  C G     LAA+   C++LK LD+ 
Sbjct: 108 EEIR---LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 261 SCQNXXXXXXXXXXXXXXXXXXXTLA---HGSPVTLSIANGL-KKLSMLQSIKLDGSVVT 316
                                  +L      S V+ S    L  +   L+S+KL+ +V  
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224
Query: 317 RAGLKAIGDWCVSLKELSLSKCDGVTDE-------GLSYVATKHRDLRKLDITCCRKISD 369
              L  +      L+EL      G T E       GLS   +  ++LR     C     D
Sbjct: 225 EK-LATLLQRAPQLEELGTG---GYTAEVRPDVYSGLSVALSGCKELR-----CLSGFWD 275
Query: 370 VSITH---VTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSI 426
               +   V S C+ LT+L +   T+   +   L+ Q C  L+ L + D  I+D GL+ +
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ-CPKLQRLWVLDY-IEDAGLEVL 333
Query: 427 -SRCSKLSVLK--------LGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTI 477
            S C  L  L+        +   + +T +GL  V M C KL+ + LY C  +T++ ++TI
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITI 392
Query: 478 ACGCPD------------------LEMINIAY------LKDI---------TDXXXXXXX 504
           A   P+                  LE ++I +       KD+         TD       
Sbjct: 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIG 452
Query: 505 KCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQI 564
             ++     S      + LG+  +  GC  L KL+I+ C    D  +L  A   + +R +
Sbjct: 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSL 511
Query: 565 NLSYTSVT 572
            +S  SV+
Sbjct: 512 WMSSCSVS 519
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query664
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 6e-80
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 5e-44
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 4e-25
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 2e-78
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 6e-47
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-23
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 6e-34
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 3e-33
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-32
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-28
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-22
2ast_B 336 S-phase kinase-associated protein 2; SCF-substrate 2e-04
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 1e-27
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 3e-26
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 2e-22
1z7x_W 461 Ribonuclease inhibitor; leucine-rich repeat, enzym 2e-15
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 8e-19
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 3e-16
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 2e-15
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 3e-18
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 8e-12
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 6e-11
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 2e-10
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 2e-09
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 2e-08
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 3e-08
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 3e-07
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 1e-15
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 2e-14
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 2e-10
4fmz_A347 Internalin; leucine rich repeat, structural genomi 5e-13
4fmz_A347 Internalin; leucine rich repeat, structural genomi 1e-09
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 9e-13
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 1e-11
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 2e-07
1o6v_A466 Internalin A; bacterial infection, extracellular r 1e-12
1o6v_A466 Internalin A; bacterial infection, extracellular r 3e-11
1o6v_A466 Internalin A; bacterial infection, extracellular r 8e-09
1o6v_A 466 Internalin A; bacterial infection, extracellular r 2e-07
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 2e-11
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 4e-11
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 5e-10
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 4e-11
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 8e-11
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 2e-09
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 1e-05
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 9e-11
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 3e-06
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 6e-10
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 4e-09
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 5e-06
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 3e-04
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 8e-10
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 3e-06
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 3e-04
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 3e-09
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 2e-05
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 5e-09
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 4e-06
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 1e-05
4ezg_A197 Putative uncharacterized protein; internalin-A, le 5e-09
4ezg_A197 Putative uncharacterized protein; internalin-A, le 3e-07
4ezg_A197 Putative uncharacterized protein; internalin-A, le 1e-06
4ezg_A197 Putative uncharacterized protein; internalin-A, le 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 1e-07
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 3e-05
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 2e-04
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 1e-07
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 8e-07
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 4e-05
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 8e-04
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 1e-06
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 2e-06
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 3e-05
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 4e-05
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 2e-06
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 4e-05
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 4e-05
3cvr_A571 Invasion plasmid antigen; leucine rich repeat and 3e-06
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 7e-06
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 5e-06
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 2e-04
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 3e-04
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 2e-05
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 4e-05
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 7e-04
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 9e-05
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 9e-05
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 3e-04
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 4e-04
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 5e-04
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 9e-04
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
 Score =  264 bits (676), Expect = 6e-80
 Identities = 104/607 (17%), Positives = 217/607 (35%), Gaps = 70/607 (11%)

Query: 1   MKKQRCSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKL--KP 58
           M+               ++++  ++  + T+P D+ S SLVC+ ++  +S+ R+ +    
Sbjct: 1   MEDPDIKRCKLSCVATVDDVIEQVMTYI-TDPKDRDSASLVCRRWFKIDSETREHVTMAL 59

Query: 59  LRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLL 118
                   +  R+ N   L L   PR    +L                    G+ +  + 
Sbjct: 60  CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI--------------PENWGGYVTPWVT 105

Query: 119 SLTLSCKNLKEIDISNAVSLKDAGAAALAEA--KNLEKLWMGRCKMVTDMGVGCIAVGCK 176
            ++ + + LK +     + + D     LA+A   +LE L + +C   T  G+  I   C+
Sbjct: 106 EISNNLRQLKSVHFRR-MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 177 NLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGC 236
            +K + ++        G  L  +                         L+ L +  +   
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHEL-------------------AQHNTSLEVL-NFYMTEF 204

Query: 237 FGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIA 296
             I    L  +   C+SL ++ +   + +  +G     ++   L++      +       
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN---LEEFCGGSLNEDIGMPE 261

Query: 297 NGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDL 356
             +  +   +  +L  S +    +  +  +   +++L L      T++  + +  K  +L
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCPNL 320

Query: 357 RKLDITCCRKISDVSITHVTSSCTGLTSLRMESC----------TLVPREAFVLIGQRCR 406
             L+      I D  +  +   C  L  LR+E             LV +   + + Q C+
Sbjct: 321 EVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 407 FLEELDLTDNEIDDEGLKSISR-CSKLSVLKLGICLNITG-------EGLAHVGMCCSKL 458
            LE + +  ++I +E L+SI      L   +L +              G+  + + C KL
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 459 KELDLY-RCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSK-CSRLNTFESRG 516
           +    Y R  G+TD G+  I    P++  + + Y    +D  L+  S+ C  L   E RG
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY-VGESDEGLMEFSRGCPNLQKLEMRG 497

Query: 517 CPLITSLGLAAIAVGCKQLIKLDIKWCH-NINDVGMLPLAHFSQNLRQINLSY-TSVTDV 574
           C   +   +AA       L  L ++    ++    ++ +A    N+  I       V   
Sbjct: 498 CC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556

Query: 575 GLLSLAS 581
           G +    
Sbjct: 557 GEIREME 563
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query664
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 100.0
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 100.0
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 100.0
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 100.0
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 100.0
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 100.0
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 100.0
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 100.0
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 100.0
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 100.0
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 100.0
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 100.0
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 100.0
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 100.0
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 100.0
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 100.0
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 100.0
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.98
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.97
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.97
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.97
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.97
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.96
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.96
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.96
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.96
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.96
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.95
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.95
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.95
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.95
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.94
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.94
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.94
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.94
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.93
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.93
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.92
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.92
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.91
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.9
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.9
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.89
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 99.88
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.88
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.88
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.87
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.87
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.86
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.84
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.82
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.8
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.8
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.79
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.78
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.78
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.78
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.78
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.77
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.76
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.76
3zyi_A 452 Leucine-rich repeat-containing protein 4; cell adh 99.76
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 99.75
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.74
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.74
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.74
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.73
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.73
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.73
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.73
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.72
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.71
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.69
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.69
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.69
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.69
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.68
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.68
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.68
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.66
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.64
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.64
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.64
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.64
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.64
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.63
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.62
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.58
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.55
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.55
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.54
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.5
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.49
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.49
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.49
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.48
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.47
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.44
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.43
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.41
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.4
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.4
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.4
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.39
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.34
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.32
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.28
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.26
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.26
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.24
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.22
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.21
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 99.2
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.2
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 99.19
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.19
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.19
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.18
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.17
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.16
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.15
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.14
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.13
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.12
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 99.12
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.1
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.1
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.09
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 99.05
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 99.05
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 99.05
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.03
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.99
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.99
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.98
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.95
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.94
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.9
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.84
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.83
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.71
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.71
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.71
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.7
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.7
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.69
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.66
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.55
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.47
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.4
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.36
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.31
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.3
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.18
4gt6_A394 Cell surface protein; leucine rich repeats, putati 98.14
4gt6_A394 Cell surface protein; leucine rich repeats, putati 98.12
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.05
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 97.78
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 97.75
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 97.7
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.7
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.66
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.6
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.31
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.17
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.1
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.04
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.92
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 85.99
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 82.45
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
Probab=100.00  E-value=1.8e-42  Score=372.99  Aligned_cols=491  Identities=21%  Similarity=0.284  Sum_probs=280.8

Q ss_pred             ccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhcccccccc--ccHHHHHhhCCCCcEeeccCCCCCCh
Q 006015           10 INLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQ--EHLPAVLIRYSNTTHLDLSLYPRIND   87 (664)
Q Consensus        10 ~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~   87 (664)
                      .|.|++|||||+.+||+ ||+..+|+.++++|||+|+++....+..+.....  ......+.+++++++|+++++..+.+
T Consensus         3 ~d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             -------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             ccchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            37899999999999999 9997899999999999999995544443333222  22455667777777777776543322


Q ss_pred             hHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHH-hcCCCcEEEccCccccChH
Q 006015           88 HSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALA-EAKNLEKLWMGRCKMVTDM  166 (664)
Q Consensus        88 ~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~  166 (664)
                      ...  .+..|            ......++..+...+++|++|++++| .+.+..+..+. .+++|++|++++|..+++.
T Consensus        82 ~~l--~~~~~------------~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  146 (594)
T 2p1m_B           82 FNL--VPDGW------------GGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTD  146 (594)
T ss_dssp             GTC--SCTTS------------CCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred             ccc--ccccc------------cchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence            111  00000            01223344555556666666666666 35544444444 4566666666665445554


Q ss_pred             HHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhc----cCCCcceEeccCCC-CCCH
Q 006015          167 GVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSIL----KLQHLEDLILEGCF-GIDD  241 (664)
Q Consensus       167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----~l~~L~~L~l~~~~-~~~~  241 (664)
                      ++..+...|++|++|++++                          |.+++..+..+.    .+++|++|++++|. .+..
T Consensus       147 ~l~~~~~~~~~L~~L~L~~--------------------------~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  200 (594)
T 2p1m_B          147 GLAAIAATCRNLKELDLRE--------------------------SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF  200 (594)
T ss_dssp             HHHHHHHHCTTCCEEECTT--------------------------CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred             HHHHHHHhCCCCCEEeCcC--------------------------CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence            4455444455555555544                          443333322222    45677777777765 3455


Q ss_pred             HHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCC-Cc----HhHHHHhhcCCCccEEEecCCccC
Q 006015          242 CSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSP-VT----LSIANGLKKLSMLQSIKLDGSVVT  316 (664)
Q Consensus       242 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~----~~~~~~l~~l~~L~~L~l~~~~~~  316 (664)
                      ..+..+...+++|++|++++|...  ..++..+..+++|++|++..+.. +.    ...+..+.++++|+.|.       
T Consensus       201 ~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls-------  271 (594)
T 2p1m_B          201 SALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-------  271 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE-------
T ss_pred             HHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc-------
Confidence            555555444788888888877433  23666777777777777665421 11    11222334444444441       


Q ss_pred             HhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHH
Q 006015          317 RAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPRE  396 (664)
Q Consensus       317 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  396 (664)
                                       .+..   .....++..+..+++|++|++++|. +++..+..+...+++|++|++.+|  +.+.
T Consensus       272 -----------------~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~  328 (594)
T 2p1m_B          272 -----------------GFWD---AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDA  328 (594)
T ss_dssp             -----------------CCBT---CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHH
T ss_pred             -----------------CCcc---cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHH
Confidence                             1211   2222333333344555555555554 444444444445555555555544  3344


Q ss_pred             HHHHHHhhCCCCCEEEc---------cCCCCChhhHHhhcc-CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcC--
Q 006015          397 AFVLIGQRCRFLEELDL---------TDNEIDDEGLKSISR-CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLY--  464 (664)
Q Consensus       397 ~~~~~~~~~~~L~~L~l---------~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~--  464 (664)
                      .+..+...+++|++|++         ..+.+++.....+.. +++|+.|.+..+ .+++.++..+...+++|+.|+++  
T Consensus       329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~  407 (594)
T 2p1m_B          329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCII  407 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecc
Confidence            44444444555555555         223455554444443 666666655544 66666666665556777777776  


Q ss_pred             ---CCCCCC----hHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhc-CCCCCEEEccCCCCCCHHHHHHHHhcCCcCc
Q 006015          465 ---RCVGIT----DSGILTIACGCPDLEMINIAYLKDITDSSLLSLSK-CSRLNTFESRGCPLITSLGLAAIAVGCKQLI  536 (664)
Q Consensus       465 ---~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  536 (664)
                         +|..++    +.++..++.+|++|++|++++  .+++..+..+.. +++|+.|++++| .+++.++.....++++|+
T Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~  484 (594)
T 2p1m_B          408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLR  484 (594)
T ss_dssp             STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCC
T ss_pred             cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcC
Confidence               455566    566666667777777777766  367766666665 677777777777 466666666656677777


Q ss_pred             EEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHh
Q 006015          537 KLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSL  579 (664)
Q Consensus       537 ~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  579 (664)
                      +|++++|+ +++.+.......+++|+.|++++|+++..+...+
T Consensus       485 ~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  526 (594)
T 2p1m_B          485 KLEIRDCP-FGDKALLANASKLETMRSLWMSSCSVSFGACKLL  526 (594)
T ss_dssp             EEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred             EEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence            77777774 3555555555556777777777777766666555
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 664
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 2e-07
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 7e-07
d1z7xw1 460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 6e-07
d1z7xw1 460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 2e-05
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 9e-05
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 7/207 (3%)

Query: 378 SCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKL 437
           S   +  + + +  +        I  +C  L+ L L    + D  + ++++ S L  L L
Sbjct: 44  SPFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 102

Query: 438 GICLNITGEGLAHVGMCCSKLKELDLYRCVGIT---DSGILTIACGCPDLEMINIAYLKD 494
             C   +   L  +   CS+L EL+L  C   T       +           ++      
Sbjct: 103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 162

Query: 495 ITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPL 554
                   + +C  L   +     ++ +            L  L +  C++I    +L L
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLEL 221

Query: 555 AHFSQNLRQINLSYTSVTDVGLLSLAS 581
                 L+ + +    V D  L  L  
Sbjct: 222 GEIP-TLKTLQVFGI-VPDGTLQLLKE 246
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query664
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.89
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.88
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.87
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.87
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.8
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.78
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.67
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.65
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.63
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.56
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.55
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.53
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.51
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.5
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.49
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.46
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.43
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.42
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.37
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.37
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.37
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.35
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.22
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.13
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.11
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.09
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.07
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 99.03
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.97
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 98.97
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.92
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.91
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 98.89
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.72
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.69
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.64
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.62
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.6
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.54
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.53
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.49
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.31
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.21
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.17
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.74
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.69
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-20  Score=192.91  Aligned_cols=170  Identities=19%  Similarity=0.162  Sum_probs=90.6

Q ss_pred             CCCCCEEEccCCCCChhhH----HhhccCCCccEEcccCCCCCChHhHHHHhh----CCCCCcEEEcCCCCCCChHH---
Q 006015          405 CRFLEELDLTDNEIDDEGL----KSISRCSKLSVLKLGICLNITGEGLAHVGM----CCSKLKELDLYRCVGITDSG---  473 (664)
Q Consensus       405 ~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---  473 (664)
                      ...++.++++++.+.....    ..+...+.++.+++++| .+++.+...+..    ....|+.+.+++|. +++.+   
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~  331 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSH  331 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccccccchhhccccccccccccccccccc-hhhhhhhh
Confidence            3445555555554443322    22233455555566555 555544443321    23456666666654 44333   


Q ss_pred             HHHHHhcCCCCCEEeccCCCCCCHHHHHhhh-----cCCCCCEEEccCCCCCCHHHH---HHHHhcCCcCcEEeccCccc
Q 006015          474 ILTIACGCPDLEMINIAYLKDITDSSLLSLS-----KCSRLNTFESRGCPLITSLGL---AAIAVGCKQLIKLDIKWCHN  545 (664)
Q Consensus       474 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~  545 (664)
                      +......+++|++|+|++|. +++.....+.     ..+.|++|++++| .+++.++   ...+..+++|++|++++| .
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~  408 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-C  408 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-S
T ss_pred             cccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC-c
Confidence            22333445566666666665 6554443332     2455666666666 5655433   334455667777777766 5


Q ss_pred             cChhhHHHHHhc----CcccCeeeeccCCCChhHHHHh
Q 006015          546 INDVGMLPLAHF----SQNLRQINLSYTSVTDVGLLSL  579 (664)
Q Consensus       546 i~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~l  579 (664)
                      +++.+...+...    ...|+.|++.+|.+.+.....+
T Consensus       409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            666666555432    2357777777777666555544
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure