Citrus Sinensis ID: 006037
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 663 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BH65 | 605 | Protein DENND6A OS=Mus mu | yes | no | 0.812 | 0.890 | 0.329 | 2e-75 | |
| Q8IWF6 | 608 | Protein DENND6A OS=Homo s | yes | no | 0.812 | 0.886 | 0.329 | 4e-75 | |
| Q5F3L4 | 584 | Protein DENND6A OS=Gallus | yes | no | 0.815 | 0.926 | 0.307 | 1e-72 | |
| Q8NEG7 | 585 | Protein DENND6B OS=Homo s | no | no | 0.811 | 0.919 | 0.307 | 9e-72 | |
| Q9D9V7 | 585 | Protein DENND6B OS=Mus mu | no | no | 0.820 | 0.929 | 0.305 | 2e-71 | |
| Q54VA9 | 715 | Protein DENND6 homolog OS | yes | no | 0.805 | 0.746 | 0.293 | 2e-66 |
| >sp|Q8BH65|DEN6A_MOUSE Protein DENND6A OS=Mus musculus GN=Dennd6a PE=1 SV=1 | Back alignment and function desciption |
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Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 204/620 (32%), Positives = 303/620 (48%), Gaps = 81/620 (13%)
Query: 25 WVVAFCTIRFDLEQGQLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFF 83
W+ C + FDLE GQ +E YP LT E+ + Y SFPDS N + D F
Sbjct: 58 WLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDS-----NSGCLGDTQFC 112
Query: 84 FRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQ 143
FRF++ +++ L +E + K YFYGYV+ RQ
Sbjct: 113 FRFRQSS---------------GRRVSLHCLLDE--FDKDLPVYLKKDPAYFYGYVYFRQ 155
Query: 144 RHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPV 203
D+ LKRG QKSLV++S P+ F +L+ + P YF+ + +E + V WP+PV
Sbjct: 156 VRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPV 215
Query: 204 PGKLMELPIGNAMLKVNLPPAHSLPLESGM--LSEESAASVAPFLPYNQSIPQGLFHDSD 261
PGK + LPI ++KV +P H P + M L++++ + LP H+ D
Sbjct: 216 PGKTLHLPIMGLVMKVRIPTCHDKPGTTQMVQLTQQADTHTSIILP--------TVHEVD 267
Query: 262 LFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFT 321
LF F + L +LWEL+L+GEP++V+AP+P + E V +LV+ I+PL DFRPYFT
Sbjct: 268 LFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFT 327
Query: 322 IHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRAS 381
IHD +F + + P ++LGVTN FF K L+ PHI+ +G P
Sbjct: 328 IHDSEFKEYTTRTQAP--PSVILGVTNPFFAKTLQHWPHIIRIGDLKP------------ 373
Query: 382 SGKISGRPEGFGLQQLSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTS 441
+G+I Q K L+ K +++SY D
Sbjct: 374 AGEIPK-------QVKVKKLKNLKTLD---------------SKPGVYTSYKPYLNRDEE 411
Query: 442 ILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGS-SPFVD 500
I+ +L R E+ SV ILRR+FLELT +F+ P Y + P + S SP+
Sbjct: 412 IIKQLQKGIQQKRPSEAQSV----ILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKS 467
Query: 501 PPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQE 560
PP L F EF+ +L+ G L+ ++ +W+ LYR+FLK PNF WF+ RR Q+
Sbjct: 468 PPQLRQFLPEEFMKTLEK--TGPQLTSGIKGDWIGLYRQFLKSPNFDGWFKTRRKEMTQK 525
Query: 561 QHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKL 620
L +A D+ I K +E+E+VD ++ L+Q ++S D+ E KL
Sbjct: 526 LEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQAG--RESLPVKPDTVE---KL 580
Query: 621 KGDLLAVFNVLPKDVQQLLL 640
+ + A+ LP D+Q +LL
Sbjct: 581 RTHIDAIILALPDDLQGILL 600
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Mus musculus (taxid: 10090) |
| >sp|Q8IWF6|DEN6A_HUMAN Protein DENND6A OS=Homo sapiens GN=DENND6A PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5F3L4|DEN6A_CHICK Protein DENND6A OS=Gallus gallus GN=DENND6A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8NEG7|DEN6B_HUMAN Protein DENND6B OS=Homo sapiens GN=DENND6B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9D9V7|DEN6B_MOUSE Protein DENND6B OS=Mus musculus GN=Dennd6b PE=2 SV=3 | Back alignment and function description |
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| >sp|Q54VA9|F116_DICDI Protein DENND6 homolog OS=Dictyostelium discoideum GN=DDB_G0280481 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 663 | ||||||
| 255541822 | 674 | conserved hypothetical protein [Ricinus | 0.983 | 0.967 | 0.804 | 0.0 | |
| 359491421 | 711 | PREDICTED: protein FAM116A-like [Vitis v | 0.941 | 0.877 | 0.789 | 0.0 | |
| 297734168 | 630 | unnamed protein product [Vitis vinifera] | 0.920 | 0.968 | 0.762 | 0.0 | |
| 15219585 | 623 | uncharacterized protein [Arabidopsis tha | 0.936 | 0.996 | 0.740 | 0.0 | |
| 222423152 | 623 | AT1G73930 [Arabidopsis thaliana] | 0.936 | 0.996 | 0.739 | 0.0 | |
| 297842139 | 623 | hypothetical protein ARALYDRAFT_476531 [ | 0.936 | 0.996 | 0.736 | 0.0 | |
| 356563097 | 656 | PREDICTED: protein FAM116A-like [Glycine | 0.960 | 0.971 | 0.752 | 0.0 | |
| 147792310 | 615 | hypothetical protein VITISV_030529 [Viti | 0.853 | 0.920 | 0.786 | 0.0 | |
| 449440913 | 642 | PREDICTED: protein DENND6B-like [Cucumis | 0.944 | 0.975 | 0.749 | 0.0 | |
| 224118900 | 653 | predicted protein [Populus trichocarpa] | 0.960 | 0.975 | 0.768 | 0.0 |
| >gi|255541822|ref|XP_002511975.1| conserved hypothetical protein [Ricinus communis] gi|223549155|gb|EEF50644.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/655 (80%), Positives = 587/655 (89%), Gaps = 3/655 (0%)
Query: 1 MSRSPSFSVKSELSLKPDPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVA 60
MSRSPSFSVK EL LKPDPE +Q+WVVAFC IRFDLEQGQLIE+CYPPG L+ +EEL+VA
Sbjct: 1 MSRSPSFSVKPELDLKPDPESLQQWVVAFCAIRFDLEQGQLIEECYPPGILSNEEELDVA 60
Query: 61 YSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLL 120
+SSFPDSVSQ QNRSSIHDCIFFFR +R K + NVT SEI E++ SS+ EEK+
Sbjct: 61 FSSFPDSVSQQQNRSSIHDCIFFFRIRRRKGSEEKNVTTSEIIEVDSNEVSSKSIEEKVT 120
Query: 121 KRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPL 180
+RS S + K ++ YGYVFNRQRHDERLKRGGEQKS+VILSH P+SSVFRPLLQIMGPL
Sbjct: 121 QRSNSGKNDKNFKFLYGYVFNRQRHDERLKRGGEQKSVVILSHDPYSSVFRPLLQIMGPL 180
Query: 181 YFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAA 240
YFD+GKKA+EHIA+YVS+WP+P+PGKLMELPIGNAMLKVNLPPAHSLPLE+GM EESA+
Sbjct: 181 YFDIGKKALEHIAAYVSMWPAPLPGKLMELPIGNAMLKVNLPPAHSLPLENGMF-EESAS 239
Query: 241 SVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAV 300
S+APFLP NQSIPQGLFHDSD+FG+FRG+LLQLWVLWELLLIGEPIL+I PTPPQC EAV
Sbjct: 240 SIAPFLPTNQSIPQGLFHDSDIFGSFRGILLQLWVLWELLLIGEPILIIGPTPPQCSEAV 299
Query: 301 ASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPH 360
ASLVSL+APLLCS+DFRPYFTIHDP+FA+LNSLQEG++FPPMVLGVTNLFFLK+LR IPH
Sbjct: 300 ASLVSLVAPLLCSVDFRPYFTIHDPEFAYLNSLQEGNSFPPMVLGVTNLFFLKSLRNIPH 359
Query: 361 IVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQLSLK-FSPSSLLNVVKLRREGPLC 419
IVSVGSPA NSNR+ F++R S+G+I GRPEG GLQQLSLK FSP+SLLN VKLRR+GPLC
Sbjct: 360 IVSVGSPASNSNRLPFSNR-STGRIPGRPEGLGLQQLSLKKFSPASLLNAVKLRRDGPLC 418
Query: 420 LMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFL 479
LMTEHKEAIWS+YAATTKPDTSILNRLID GMSPRVEESMSVVNNEILRRHFLELTTNFL
Sbjct: 419 LMTEHKEAIWSTYAATTKPDTSILNRLIDVGMSPRVEESMSVVNNEILRRHFLELTTNFL 478
Query: 480 APFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRR 539
APFGPYFR TTP EGSSPFVDPP LPPFN +EFL+SL ARGVGKFLSKRMRSNWLDLY+R
Sbjct: 479 APFGPYFRATTPFEGSSPFVDPPPLPPFNTDEFLASLSARGVGKFLSKRMRSNWLDLYKR 538
Query: 540 FLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQ 599
FLKGPNF+PWF+RRR AEQEQHRLW+QARM+TDIQ I KMSELE VD+FNA+ERHL
Sbjct: 539 FLKGPNFLPWFRRRRTVAEQEQHRLWKQARMKTDIQLFIFKMSELEVVDSFNAIERHLNG 598
Query: 600 EIQLQQSGCAATDSAEICQKLKGDLLAVFNVLPKDVQQLLLFNPERAALLQRTPE 654
EIQLQQS A DSA C KLK DL AVFN+LPKD+QQLLL NPERAALLQ +P+
Sbjct: 599 EIQLQQSERANADSAATCLKLKKDLRAVFNILPKDMQQLLLMNPERAALLQGSPQ 653
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491421|ref|XP_002275350.2| PREDICTED: protein FAM116A-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297734168|emb|CBI15415.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|15219585|ref|NP_177533.1| uncharacterized protein [Arabidopsis thaliana] gi|79321259|ref|NP_001031278.1| uncharacterized protein [Arabidopsis thaliana] gi|12325141|gb|AAG52517.1|AC016662_11 unknown protein; 75644-77831 [Arabidopsis thaliana] gi|222424052|dbj|BAH19987.1| AT1G73930 [Arabidopsis thaliana] gi|332197405|gb|AEE35526.1| uncharacterized protein [Arabidopsis thaliana] gi|332197406|gb|AEE35527.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|222423152|dbj|BAH19555.1| AT1G73930 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297842139|ref|XP_002888951.1| hypothetical protein ARALYDRAFT_476531 [Arabidopsis lyrata subsp. lyrata] gi|297334792|gb|EFH65210.1| hypothetical protein ARALYDRAFT_476531 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356563097|ref|XP_003549802.1| PREDICTED: protein FAM116A-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147792310|emb|CAN70280.1| hypothetical protein VITISV_030529 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449440913|ref|XP_004138228.1| PREDICTED: protein DENND6B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224118900|ref|XP_002317933.1| predicted protein [Populus trichocarpa] gi|222858606|gb|EEE96153.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 663 | ||||||
| TAIR|locus:2031506 | 623 | AT1G73930 "AT1G73930" [Arabido | 0.778 | 0.828 | 0.745 | 2e-250 | |
| RGD|1306064 | 602 | Dennd6a "DENN/MADD domain cont | 0.333 | 0.367 | 0.370 | 1.3e-64 | |
| UNIPROTKB|F1MBQ4 | 608 | FAM116A "Uncharacterized prote | 0.334 | 0.365 | 0.371 | 1.1e-63 | |
| UNIPROTKB|Q8IWF6 | 608 | DENND6A "Protein DENND6A" [Hom | 0.334 | 0.365 | 0.363 | 1.6e-63 | |
| MGI|MGI:2442980 | 605 | Dennd6a "DENN/MADD domain cont | 0.337 | 0.370 | 0.375 | 2.1e-63 | |
| UNIPROTKB|G3X7L3 | 580 | FAM116B "Uncharacterized prote | 0.334 | 0.382 | 0.395 | 6e-63 | |
| UNIPROTKB|Q5F3L4 | 584 | DENND6A "Protein DENND6A" [Gal | 0.330 | 0.375 | 0.375 | 1.1e-62 | |
| UNIPROTKB|F1SGK8 | 608 | FAM116A "Uncharacterized prote | 0.334 | 0.365 | 0.363 | 1.2e-60 | |
| UNIPROTKB|Q8NEG7 | 585 | DENND6B "Protein DENND6B" [Hom | 0.334 | 0.379 | 0.373 | 2.1e-60 | |
| MGI|MGI:1916690 | 585 | Dennd6b "DENN/MADD domain cont | 0.334 | 0.379 | 0.369 | 1.1e-59 |
| TAIR|locus:2031506 AT1G73930 "AT1G73930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2039 (722.8 bits), Expect = 2.0e-250, Sum P(2) = 2.0e-250
Identities = 387/519 (74%), Positives = 445/519 (85%)
Query: 138 YVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVS 197
YVFNRQRHDERLKRGGEQKS+VILSH P+SSVFRPLLQI+GPLYFDVG KAIEHIA YVS
Sbjct: 106 YVFNRQRHDERLKRGGEQKSVVILSHTPYSSVFRPLLQIIGPLYFDVGNKAIEHIAGYVS 165
Query: 198 IWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLF 257
+WP+PVPGKLMELPIGNAMLKVNLPPAHSLPLE+G+L EESA+S+AP LP NQS+PQGLF
Sbjct: 166 MWPAPVPGKLMELPIGNAMLKVNLPPAHSLPLENGILYEESASSMAPLLPTNQSVPQGLF 225
Query: 258 HDSDLFGTFRGXXXXXXXXXXXXXIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFR 317
HD+DLFG +RG IGEPIL+IAPTPPQC EAVA LVSL+APL CS+DFR
Sbjct: 226 HDADLFGIYRGLLLQLWTLWELLLIGEPILIIAPTPPQCSEAVACLVSLVAPLFCSVDFR 285
Query: 318 PYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFA 377
PYFTIHDP FA LNSL+EGDTFPPMVLGVTN+FFLKALR IPH+VSVG+PAPNSNRVAF
Sbjct: 286 PYFTIHDPGFARLNSLREGDTFPPMVLGVTNIFFLKALRNIPHVVSVGTPAPNSNRVAFT 345
Query: 378 SRASSGKISGRPEGFGLQQLSLK-FSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATT 436
SR S+GK+S +PEG G+QQLSL+ FSP++LLN VKLRR+GPLCLMTEHKEA+W++Y+A T
Sbjct: 346 SR-SAGKLSVKPEGLGVQQLSLRRFSPTNLLNAVKLRRDGPLCLMTEHKEAVWTTYSAVT 404
Query: 437 KPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSS 496
KPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYF+ PS+GSS
Sbjct: 405 KPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFQVNAPSDGSS 464
Query: 497 PFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFXXXXXX 556
P+V PP LP F A+EFLS+L RGVGKFLSKRM+SNW DLYRRFL+GPNF PWF
Sbjct: 465 PYVTPPALPSFGADEFLSNLSGRGVGKFLSKRMKSNWPDLYRRFLRGPNFSPWFQRRRAV 524
Query: 557 XXXXXHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQLQQSGCAATDSAEI 616
RLWR ARM+TD++Q+ ++M+ELE+VD+FNA+E+H+ +E++ +SG A DS
Sbjct: 525 AEQEQRRLWRLARMKTDMRQITSQMNELEAVDSFNAIEKHISEEVKSLESGGGA-DSEGT 583
Query: 617 CQKLKGDLLAVFNVLPKDVQQLLLFNPERAALLQRTPEL 655
QKLK DL AVF+VLPKD+QQLLL NP+RA+LLQ EL
Sbjct: 584 FQKLKKDLQAVFSVLPKDMQQLLLLNPQRASLLQDPSEL 622
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| RGD|1306064 Dennd6a "DENN/MADD domain containing 6A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MBQ4 FAM116A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8IWF6 DENND6A "Protein DENND6A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:2442980 Dennd6a "DENN/MADD domain containing 6A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3X7L3 FAM116B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5F3L4 DENND6A "Protein DENND6A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SGK8 FAM116A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8NEG7 DENND6B "Protein DENND6B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1916690 Dennd6b "DENN/MADD domain containing 6B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5F3L4 | DEN6A_CHICK | No assigned EC number | 0.3073 | 0.8159 | 0.9263 | yes | no |
| Q8BH65 | DEN6A_MOUSE | No assigned EC number | 0.3290 | 0.8129 | 0.8909 | yes | no |
| Q8IWF6 | DEN6A_HUMAN | No assigned EC number | 0.3290 | 0.8129 | 0.8865 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 663 | |||
| pfam08616 | 114 | pfam08616, SPA, Stabilisation of polarity axis | 8e-10 | |
| pfam07792 | 57 | pfam07792, Afi1, Docking domain of Afi1 for Arf3 i | 1e-08 |
| >gnl|CDD|219936 pfam08616, SPA, Stabilisation of polarity axis | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-10
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 261 DLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPP--QCCEAVASLVSLIAPLLCSIDF-- 316
L + +LW LL + I+ ++ P + C V +L +LI+ F
Sbjct: 3 SLLKLLGKFGPPIILLWNALLTQKRIIFLSYQPSAGEVCNFVLALCNLISGGGILRGFLN 62
Query: 317 ---RPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFF 351
PY + D +++L++ P + G TN F
Sbjct: 63 NAIFPYVDLSD-----IDALEK---VPGYIAGTTNPIF 92
|
Yeast AFI1 (ARF3-interaction protein 1) has been shown to interact with the outer plaque of the spindle pole body. In Aspergillus nidulans the protein member is necessary for stabilisation of the polarity axes during septation. and in S. cerevisiae it functions as a polarisation-specific docking factor. Length = 114 |
| >gnl|CDD|219579 pfam07792, Afi1, Docking domain of Afi1 for Arf3 in vesicle trafficking | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 663 | |||
| KOG2432 | 565 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF09794 | 379 | Avl9: Transport protein Avl9; InterPro: IPR018307 | 100.0 | |
| PF08616 | 113 | SPA: Stabilization of polarity axis | 99.91 | |
| KOG3823 | 630 | consensus Uncharacterized conserved protein [Funct | 99.91 | |
| PF07792 | 145 | Afi1: Docking domain of Afi1 for Arf3 in vesicle t | 99.82 | |
| smart00799 | 183 | DENN Domain found in a variety of signalling prote | 99.76 | |
| PF02141 | 185 | DENN: DENN (AEX-3) domain; InterPro: IPR001194 The | 99.58 | |
| PF09804 | 280 | DUF2347: Uncharacterized conserved protein (DUF234 | 99.21 | |
| KOG3569 | 425 | consensus RAS signaling inhibitor ST5 [Signal tran | 99.14 | |
| KOG4704 | 431 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| KOG3570 | 1588 | consensus MAPK-activating protein DENN [Signal tra | 97.94 | |
| KOG1090 | 1732 | consensus Predicted dual-specificity phosphatase [ | 96.75 | |
| KOG2432 | 565 | consensus Uncharacterized conserved protein [Funct | 95.32 | |
| KOG2080 | 1295 | consensus Uncharacterized conserved protein, conta | 94.73 | |
| smart00800 | 89 | uDENN Domain always found upstream of DENN domain, | 90.17 | |
| KOG2127 | 1020 | consensus Calmodulin-binding protein CRAG, contain | 90.11 |
| >KOG2432 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-163 Score=1286.73 Aligned_cols=561 Identities=40% Similarity=0.674 Sum_probs=509.4
Q ss_pred CCCCCCcccccccCCCC---ChhhhHhHhheeEEEEeeCCCCccceeeCCCCC-CChhhhhhcccccCCCccccccCccc
Q 006037 1 MSRSPSFSVKSELSLKP---DPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSS 76 (663)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~Wv~~icVV~FDle~Gq~vE~~YP~~~-Ls~~Ek~~Ia~lsFPDs~~~~~n~~~ 76 (663)
|+|++++.|+.+++... ||++|++|+||||||+||||+||++|+|||+++ ||++|+.||||+||||| |++|
T Consensus 1 ~~re~~~~va~~~~~epd~e~w~~f~~WlHc~Cvv~FDLelGQalE~iYP~~~~ls~~E~~nicy~aFPDS-----Ns~~ 75 (565)
T KOG2432|consen 1 REREHQNVVATNSNSEPDAEDWDNFSQWLHCFCVVTFDLELGQALEVIYPPDFMLSDQEKINICYLAFPDS-----NSSC 75 (565)
T ss_pred CCCcccccccCCCCCCCCchhHHHHHHhheeeEEEEechhhcceeeeecCCccccccchheeeeEeecCCC-----Cccc
Confidence 79999999998887755 588899999999999999999999999999999 99999999999999999 8999
Q ss_pred CCeeEEEEEecCCCCCCCCCCCCccccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceee
Q 006037 77 IHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQK 156 (663)
Q Consensus 77 ~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~kD~svkRGy~QK 156 (663)
+|||+||||+|+..+...-. .+ +++ |.++..+..|+||||||||++|++++|||+||
T Consensus 76 ~~Dt~F~fR~R~~~~~~~~~-------~~---------------dkd-~~~l~~d~~ylyG~VffRQ~~Dk~l~RGy~QK 132 (565)
T KOG2432|consen 76 MGDTKFHFRFRRTTRRDSLP-------GY---------------DKD-PPALRQDGMYLYGFVFFRQTRDKTLKRGYFQK 132 (565)
T ss_pred cccceEEEEEeccccccccc-------cc---------------cCC-CcccCCCCceeEEEEeeeeechhhhhhhhhhh
Confidence 99999999999975433310 11 223 66788999999999999999999999999999
Q ss_pred EEEEeeCCCchhhHHHHHHHhchhhhcccHHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCcccc
Q 006037 157 SLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSE 236 (663)
Q Consensus 157 SlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~ 236 (663)
||||+|++||+++|++++..|+|.||+.|+.++|+||+.|+.||.|++|.++|||++|.+++++||+.++.|.+.+.
T Consensus 133 Svviis~LPf~~lf~tvl~~iap~yFe~gt~~ieaa~~~i~~Wp~p~~Gk~LELPll~c~~KI~lP~a~~~p~~ar~--- 209 (565)
T KOG2432|consen 133 SVVIISFLPFFSLFYTVLFQIAPFYFELGTNAIEAACCGIDRWPAPVPGKTLELPLLGCKKKIRLPTAHSLPFEARK--- 209 (565)
T ss_pred ceEEEEecccccccchHHhhhchHHHhcccchhhhhhccccCCCCccCCceeeecccceeeeeeccccccCcccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977541
Q ss_pred ccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcc
Q 006037 237 ESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDF 316 (663)
Q Consensus 237 ~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~ 316 (663)
+.+.. ....++..+++.+||+|||+++..+..|||+|||+||+||||+|+|++|++|||+|.++++||+||.||.|+
T Consensus 210 ~~~~e---~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~c~df 286 (565)
T KOG2432|consen 210 TGAVE---LRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDF 286 (565)
T ss_pred cceee---eccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcceeCCCC
Confidence 11111 223466778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEEcCCCCCCCcccccccccCCCCCCCCCCCccccc
Q 006037 317 RPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQ 396 (663)
Q Consensus 317 RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 396 (663)
||||||||++|++|++.. ..+|.+|||||||||.|+++|||||++||+++++.++. ++
T Consensus 287 RPYFTIHDseF~e~tS~~--~sdP~~iLGVTNpFF~K~L~~wPHilrv~~~~~n~~~~--------------------~~ 344 (565)
T KOG2432|consen 287 RPYFTIHDSEFREYTSNV--DSDPLVILGVTNPFFRKALAHWPHILRVGDNQPNMQQQ--------------------QQ 344 (565)
T ss_pred CceeeeccHHHHHHHhcc--CCCCceEEecCCHHHHHHHhcCcceeeecCCCccccch--------------------hh
Confidence 999999999999999865 56699999999999999999999999999998764321 11
Q ss_pred cccccCccchhhHhhhccCCCccccccccchhhhhcccCCCCChHHHHHHHhcCCCCCccchhhhhchHHHHHHHHHHHH
Q 006037 397 LSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTT 476 (663)
Q Consensus 397 ~~~k~~~~~~~~~~k~~~~~~~~~~~~~k~~~~t~y~~~l~~Dk~~lk~L~~~~~~~~~~e~~~~v~~~iLRRHF~eLT~ 476 (663)
.+ .+|.....-++++|+|+||+|+||++|||+++|||++|++++|++| |||++|||||+||||
T Consensus 345 k~-------------~~kl~~~~~~Lns~~gl~t~Ykp~lkkD~slikkll~g~~~krpee----vqs~ilrrhfLElt~ 407 (565)
T KOG2432|consen 345 KK-------------AKKLASANTTLNSKAGLYTKYKPYLKKDKSLIKKLLLGMKTKRPEE----VQSAILRRHFLELTQ 407 (565)
T ss_pred hh-------------hhhhhhhccccCCCccceeccccccCccHHHHHHHHHhcccCChHH----HHHHHHHHHHHHhcc
Confidence 11 1111111227899999999999999999999999999999999999 999999999999999
Q ss_pred HhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHHHHH
Q 006037 477 NFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAA 556 (663)
Q Consensus 477 ~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~ 556 (663)
+||+||+|||+++||.+++|||++||.+..|..||||.+||++|+ |||+++||||.||||||+|||||.|||..||+|
T Consensus 408 ~f~~p~~~Y~a~l~pqk~isP~~s~p~~~sF~~defl~~le~~Gp--~lt~r~kgdw~glyrrflrspnf~gwf~~rr~e 485 (565)
T KOG2432|consen 408 SFMIPLERYMASLMPQKDISPFKSPPNLNSFKLDEFLGTLEKAGP--QLTSRLKGDWKGLYRRFLRSPNFRGWFGARRRE 485 (565)
T ss_pred ceeecchHHHHhhCCccCCCcccCCCcccccCHHHHHHHHhhcCc--cccccccCCcHHHHHHHccCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhcCcHHHH
Q 006037 557 AEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKLKGDLLAVFNVLPKDVQ 636 (663)
Q Consensus 557 ~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vDl~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~lp~dlq 636 (663)
|+|+|++||++|+|.+|+.+|+++|+|||+||||+|||+|| +|... .+.+ ++..|.+||+.||++|++.||+|||
T Consensus 486 ~~q~l~~l~l~al~~~dl~~w~~~~~eve~vd~~lklk~kl-l~~d~---~~~~-~~~~t~qklr~~i~a~~~~lp~dlq 560 (565)
T KOG2432|consen 486 LQQTLQDLQLQALSVADLEHWAHDKQEVEIVDMILKLKQKL-LYGDK---ATQL-NNGSTQQKLRAQIEAMKGLLPPDLQ 560 (565)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHhhcchHHHHHHHHHHHHHH-Hhhhh---hhcC-CCcchHHHHHHHHHHHHhhCCHhHH
Confidence 99999999999999999999999999999999999999999 44432 1222 6789999999999999999999999
Q ss_pred HHHhc
Q 006037 637 QLLLF 641 (663)
Q Consensus 637 ~~l~~ 641 (663)
+||+.
T Consensus 561 ~~lll 565 (565)
T KOG2432|consen 561 NVLLL 565 (565)
T ss_pred hhhcC
Confidence 99873
|
|
| >PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth | Back alignment and domain information |
|---|
| >PF08616 SPA: Stabilization of polarity axis | Back alignment and domain information |
|---|
| >KOG3823 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast | Back alignment and domain information |
|---|
| >smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN | Back alignment and domain information |
|---|
| >PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha | Back alignment and domain information |
|---|
| >PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function | Back alignment and domain information |
|---|
| >KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4704 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2432 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins | Back alignment and domain information |
|---|
| >KOG2127 consensus Calmodulin-binding protein CRAG, contains DENN domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 105/687 (15%), Positives = 195/687 (28%), Gaps = 205/687 (29%)
Query: 64 FPDSVSQHQNRSSIH----DCIFFFRFQRHKNLPQGNVTPSEITEI---NDKITSSELTE 116
F Q+Q + + + F + +++P+ ++ EI I D ++ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 117 EKLLKRSKSFSSSKGSRYFYGYVFNRQRHD-----ERLKRGGEQKSLVILSHGPFSSVFR 171
LL SK +V R + +K Q S++ +
Sbjct: 69 WTLL--------SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-------- 112
Query: 172 PLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLES 231
++ LY D V L + A+L+ L PA ++ ++
Sbjct: 113 --IEQRDRLYNDN-----------QVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLID- 156
Query: 232 GML-SEES--AASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILV 288
G+L S ++ A V + +F W L +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIF-------------------W--LNLKN---- 191
Query: 289 IAPTPPQCCEAVASLVSLIAPLLCS---IDFRPYFTIHDPQFAHLNSLQEGDTFPP--MV 343
+P E + L+ I P S IH Q A L L + + +V
Sbjct: 192 -CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLV 249
Query: 344 L-GVTNLFFLKALR---KIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGL---QQ 396
L V N A KI +++ F S A++ IS L +
Sbjct: 250 LLNVQNAKAWNAFNLSCKI--LLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 397 LSLKFSPSSLLNVVKLRRE----GPLCL-----MTEHKEAIWSSYAATTKPDTSILNRLI 447
SL L RE P L A W ++ + L +I
Sbjct: 304 KSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTII 359
Query: 448 DAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTT--PSE------GSSPFV 499
++ S++V+ R+ F L+ F + P+
Sbjct: 360 ES--------SLNVLEPAEYRKMFDRLSV---------FPPSAHIPTILLSLIWFDVIKS 402
Query: 500 DPPTLPPFNANEFLS-SLQARGVGK---------FLSKRMRSNWLDLYRRFL-------- 541
D + N+ SL + + K N L+R +
Sbjct: 403 DVMVV----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 542 -KGPNFMP------WFQ---RRRAAAEQEQH-----RL-----WRQARMRTDIQQLIAKM 581
+ +P ++ E + + + + ++R D A
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 582 SELESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKLKGDLLAVFNVLPK-------- 633
S L ++ + ++ D+ ++L +L + LPK
Sbjct: 519 SILNTLQQLKFYKPYI-------------CDNDPKYERLVNAIL---DFLPKIEENLICS 562
Query: 634 ---DVQQLLLFNP------ERAALLQR 651
D+ ++ L E +QR
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 391 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 663 | |||
| 3tw8_A | 391 | DENN domain-containing protein 1B; longin domain, | 99.92 |
| >3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=230.16 Aligned_cols=242 Identities=16% Similarity=0.212 Sum_probs=179.3
Q ss_pred hheeEEEEee--CCCCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCCCCCCCCcccc
Q 006037 26 VVAFCTIRFD--LEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEIT 103 (663)
Q Consensus 26 v~~icVV~FD--le~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~ 103 (663)
..|+|+|.=- .+.++.|.+.||++.-.++--+.|...+|||+..-. +.......|+|=+.+.
T Consensus 14 f~~~~~v~~p~~~~~~p~i~~~fP~~~~d~~~l~~ip~FCfP~~~~~~--~~~~~~~~fsFVLTd~-------------- 77 (391)
T 3tw8_A 14 FDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERV--SQNQVGQHFTFVLTDI-------------- 77 (391)
T ss_dssp CSEEEEEEC-----CCCEEEEEESTTCCCHHHHHHHHHHHSCSCHHHH--GGGCCSEEEEEEEECT--------------
T ss_pred EEEEEEEeCCCCCCCCCeeeEeCCCCcccchhhhccccccCCCccccC--ccCCCCceEEEEEecC--------------
Confidence 3466676553 456799999999976444445679999999997532 1123457888877653
Q ss_pred ccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeeEEEEeeCCCchhhHHHHHHHhchhhhc
Q 006037 104 EINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFD 183 (663)
Q Consensus 104 ~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~ 183 (663)
++...|||+.- +. +.||++|||||+||+++|+.+|..+.+.|++
T Consensus 78 ---------------------------dG~r~yg~Cr~----~~-----~~~k~icilS~lp~f~~F~k~L~~l~~~~~~ 121 (391)
T 3tw8_A 78 ---------------------------ESKQRFGFCRL----TS-----GGTICLCILSYLPWFEVYYKLLNTLADYLAK 121 (391)
T ss_dssp ---------------------------TSCEEEEEEEE----CT-----TSSEEEEEEESSCCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCEEEEEEEc----cC-----CCceEEEEEeCChHHHHHHHHHHHHHHHHhc
Confidence 35678999852 21 3579999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCCccccccchh
Q 006037 184 VGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLF 263 (663)
Q Consensus 184 ~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf 263 (663)
.+...||++++.|.+||.|.||++++++..+ +++ .|....+| . .| ...+..+||
T Consensus 122 ~~~~~le~~~~~l~~~P~P~pG~~v~l~~~~-~~~--~P~~~~Lp----------------~------~~-~~~~~~~Lf 175 (391)
T 3tw8_A 122 ELENDLNETLRSLYNHPVPKANTPVNLSVHS-YFI--APDVTGLP----------------T------IP-ESRNLTEYF 175 (391)
T ss_dssp TCHHHHHHHHHHHHHSCCCCSCC-------------------CCC----------------C------BT-TSHHHHHHH
T ss_pred CCchHHHHHHHHHhhCCCCCCCCeEEEeccc-eee--CCCCCCCC----------------C------CC-CCCCHHHHH
Confidence 8888999999999999999999998887754 221 23211111 0 01 113344566
Q ss_pred hhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeE
Q 006037 264 GTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMV 343 (663)
Q Consensus 264 ~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~I 343 (663)
+++. ..++..||+++|++++|||++.+++.+|.+|.|+++||.|+.|.+.|.|+++.|..|| . .+|.++|
T Consensus 176 ~~L~--~~~il~l~~~~LlE~rIl~~S~~~~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~---l-----~aP~Pfi 245 (391)
T 3tw8_A 176 VAVD--VNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDY---C-----CAPMPYL 245 (391)
T ss_dssp HHSC--HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGG---G-----GCSSCEE
T ss_pred HhCC--HHHHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcCcccCcceEeecCHHHHhH---h-----cCCCCEE
Confidence 6663 6999999999999999999999999999999999999999999999999999998776 3 3789999
Q ss_pred EecchHHHHHhh
Q 006037 344 LGVTNLFFLKAL 355 (663)
Q Consensus 344 lGVTNPfF~k~~ 355 (663)
+||++.++.+..
T Consensus 246 iGv~~~~~~~~~ 257 (391)
T 3tw8_A 246 IGIHSSLIERVK 257 (391)
T ss_dssp EEEETTTHHHHH
T ss_pred EEecchhHHHhh
Confidence 999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00