Citrus Sinensis ID: 006071
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 662 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUU3 | 757 | Pentatricopeptide repeat- | yes | no | 0.978 | 0.856 | 0.736 | 0.0 | |
| O81908 | 710 | Pentatricopeptide repeat- | no | no | 0.910 | 0.849 | 0.329 | 2e-97 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.921 | 0.799 | 0.247 | 4e-50 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.853 | 0.617 | 0.237 | 2e-49 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.762 | 0.801 | 0.250 | 2e-48 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.933 | 0.847 | 0.238 | 9e-48 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.723 | 0.761 | 0.258 | 5e-47 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.755 | 0.551 | 0.25 | 5e-47 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.694 | 0.727 | 0.254 | 8e-47 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.649 | 0.667 | 0.268 | 2e-46 |
| >sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/650 (73%), Positives = 564/650 (86%), Gaps = 2/650 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 95 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 154
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 155 KMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 214
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY++LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFFEDMK+RGIS D T+NTMING+ RFKKMDEAEKLF EMK I P+V+SYTTMIKG
Sbjct: 275 LRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKG 334
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y+AV+R DD LRIF+EM+S ++PNA TY+ LLPGLCDAGKMVE + +L+ M+ ++I PK
Sbjct: 335 YLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 395 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 454
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 455 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 514
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPDS++EI+KIM RRGVPR+++AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 515 IRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGH 574
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P SSLFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 575 VPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 634
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD ++ +SY+KVLDALL
Sbjct: 635 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFSSYDKVLDALLG 694
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+
Sbjct: 695 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (915), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 203/616 (32%), Positives = 338/616 (54%), Gaps = 13/616 (2%)
Query: 39 ALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG---VQWDEDMFE 95
L+FF WV G F+H ++ M+E LGR LN AR L + ++ V+ + F
Sbjct: 84 GLRFFDWVSNKG-FSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFN 142
Query: 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML-S 154
LI SYG G+ QESVK+F MKQ+G+ SV ++++L ++L+RGR MA F++M +
Sbjct: 143 SLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRT 202
Query: 155 EGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214
G+ P +T+N ++ GF + ++ A R F+DM+ + DVVTYNT+I+G R K+
Sbjct: 203 YGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKI 262
Query: 215 AEKLFAEM--KEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
A + + M K ++ P V+SYTT+++GY + D+A+ +F +M S +KPNAVTY L
Sbjct: 263 AHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTL 322
Query: 273 LPGLCDAGKMVEVQKVL---REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI 329
+ GL +A + E++ +L + + P D F L+ C +GHL+AA V + M+
Sbjct: 323 IKGLSEAHRYDEIKDILIGGNDAFTTFAP--DACTFNILIKAHCDAGHLDAAMKVFQEML 380
Query: 330 RLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQH 389
+ + ++ Y +LI C +DRA L ++L EKE++L + A++YNPM ++
Sbjct: 381 NMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPL-AAAYNPMFEY 439
Query: 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449
LC NG+T +AE FRQLMK+GV DP ++ LI GH +EG A+E++ +M RR D
Sbjct: 440 LCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDL 499
Query: 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509
+ Y LI+ L+ GE A L M+ + P ++ F SV+ L + + ++
Sbjct: 500 ETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTL 559
Query: 510 MVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIA 569
M+EK +++N+DL +++ L E+A + L+ +G + + LL L E K +
Sbjct: 560 MLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYDNGYLVKMEELLGYLCENRKLLD 619
Query: 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIA 629
A L+ FCL + ++D+ + V++ L + A+S+ +++E G L
Sbjct: 620 AHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRN 679
Query: 630 GLNQEGNTKQADILSR 645
L G ++ +S+
Sbjct: 680 ALEAAGKWEELQFVSK 695
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 174/704 (24%), Positives = 301/704 (42%), Gaps = 94/704 (13%)
Query: 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85
V V+ K+ AL+ F + + F H T+ +IE LG GK +L+DM +
Sbjct: 10 VTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMREN 69
Query: 86 -GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMM 144
G E ++ +++YG+KG VQE+V +F+ M E +V SY+A+ +++ G +
Sbjct: 70 VGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQ 129
Query: 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204
A + + +M GI P +++ + + F + + A+R +M S+G ++VV Y T++
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189
Query: 205 ----------GYNRFKKM-------------------------DEAEKLFAEMKEKNIEP 229
GY F KM E EKL ++ ++ + P
Sbjct: 190 GFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLP 249
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289
+ +Y I+G D A+R+ + KP+ +TY L+ GLC K E + L
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYL 309
Query: 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK 349
+MV + P D+ + L+ CK G + A ++ + + Y LI+ C
Sbjct: 310 GKMVNEGLEP-DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCH 368
Query: 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409
+RA+ L ++ + K I +P L YN +I+ L + G +A ++ +K
Sbjct: 369 EGETNRALALFNEALGKGI--KPNVIL------YNTLIKGLSNQGMILEAAQLANEMSEK 420
Query: 410 GVLDPV-AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468
G++ V FN L+ G K G A +VK+M +G D + LI Y + + +A
Sbjct: 421 GLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENA 480
Query: 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528
LD M+++G P + S++ L + + + K+MVEKG NL +LE+
Sbjct: 481 LEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLES 540
Query: 529 LLMRGHVEEALGRIDLMMQ---------------------------------------SG 549
L ++EALG ++ M S
Sbjct: 541 LCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSS 600
Query: 550 SVPNFDSLLSVLSEKGKTIAAVKL----LDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605
S P ++ ++ +EK A KL +D CLG D +Y ++D G
Sbjct: 601 STPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY----TYRLMVDGFCKTGNVNLG 656
Query: 606 YSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQ-ADILSRMIR 648
Y L ++ME G + + ++I L E + A I+ RM++
Sbjct: 657 YKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 151/636 (23%), Positives = 289/636 (45%), Gaps = 71/636 (11%)
Query: 39 ALQFFRWVERAGLFNHDRETHLKMIEIL---GRVGKLNHARCIL-------------LDM 82
AL F W+ + + H ++ ++ +L G VG + R ++ LD+
Sbjct: 106 ALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDL 165
Query: 83 PKKGVQWDE----------DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132
+K + DE + L+ S + G+V E +++ M + V ++ +Y+ +
Sbjct: 166 CRK-MNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224
Query: 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI 192
+ G A +Y +K++ G++P TY ++ G+ L++A + F +M +G
Sbjct: 225 VNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGC 284
Query: 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252
+ V Y +I+G +++DEA LF +MK+ PTV +YT +IK ER +AL
Sbjct: 285 RRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALN 344
Query: 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312
+ EM+ +KPN TYT L+ LC K + +++L +M+E+ + P + + L+
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALINGY 403
Query: 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372
CK G + A DV++ M + Y LI+ +CK+ ++ +A+ +L+K++E++++
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVL--- 459
Query: 373 QSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPD 431
+ +YN +I C +G A + +G++ D + ++I K +
Sbjct: 460 -----PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVE 514
Query: 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491
A ++ + ++GV + Y LI+ Y + G+ +A L+ M+ P S F +++
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574
Query: 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551
L DG+++ A+ + + MV+ G++ + ++ LL G + A R M+ SG+
Sbjct: 575 HGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK 634
Query: 552 PNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611
P D +Y + G+ L+A ++ K
Sbjct: 635 P--------------------------------DAHTYTTFIQTYCREGRLLDAEDMMAK 662
Query: 612 IMEKGGVTDWKSSDKLIAGLNQEGNTKQA-DILSRM 646
+ E G D + LI G G T A D+L RM
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/518 (25%), Positives = 247/518 (47%), Gaps = 13/518 (2%)
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K++ + ++ K + + M G+ + + +LI + ++ + ++ + M +L
Sbjct: 86 KLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKL 145
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
G E ++ + +L R A ++M G +P T+N ++ G FL K A
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+ + M ++G D+VTY ++NG + D A L +M++ +EP V+ Y T+I G
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
+ DDAL +F EM++ ++PN VTY++L+ LC+ G+ + ++L +M+ER I P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP- 324
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
D F L+ K G L A + M++ SI Y LI FC + D A ++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNN 419
+ +V K P + +YN +I+ C + + FR++ ++G++ + V +N
Sbjct: 385 EFMVSKHCF--P------DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479
LI+G + G+ D A EI K M GVP + Y L++ + G+ A + +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539
P + ++E + + G+V+ + ++ KGVK ++ ++ +G EEA
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 540 GRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLL 574
M + G++PN +++L+ G A+ +L+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 157/658 (23%), Positives = 299/658 (45%), Gaps = 40/658 (6%)
Query: 11 QNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGL----FNHDRETHLKMIEIL 66
N +R + + + V VL+ +N Q R+V++ G F H + MI IL
Sbjct: 66 NNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQ--RFVDQLGFHFPNFKHTSLSLSAMIHIL 123
Query: 67 GRVGKLNHARCILLDMPKK-GVQ----------------WDEDMFEVLIESYGKKGIVQE 109
R G+L+ A+ LL M ++ GV ++ +F++LI +Y + ++E
Sbjct: 124 VRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLRE 183
Query: 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169
+ + F +++ G S+ + +AL ++R G +A + ++ G+ +T N+M+
Sbjct: 184 AHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVN 243
Query: 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP 229
K+E F ++ +G+ D+VTYNT+I+ Y+ M+EA +L M K P
Sbjct: 244 ALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSP 303
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289
V +Y T+I G + + A +F EM + P++ TY +LL C G +VE +KV
Sbjct: 304 GVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVF 363
Query: 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK 349
+M R + P D F ++ + +SG+L+ A ++ + + Y ILI+ +C+
Sbjct: 364 SDMRSRDVVP-DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCR 422
Query: 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409
M A+ L ++++ Q M+ +YN ++ LC G+A+ F ++ ++
Sbjct: 423 KGMISVAMNLRNEML--------QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474
Query: 410 GVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468
+ D LI GH K GN +A E+ + M + + D Y L++ + + G+ A
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528
K M+ P + ++ +L G + A RV M+ K +K + + +++
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Query: 529 LLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVL------SEKGKTIAAVKLLDFCLGRDC 582
G+ + ++ M+ G VP+ S +++ K VK ++ G
Sbjct: 595 YCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQG-GL 653
Query: 583 IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640
+ D+ +Y +L + A +L K++E+G D + +I G + N +A
Sbjct: 654 VPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/492 (25%), Positives = 235/492 (47%), Gaps = 13/492 (2%)
Query: 87 VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146
+ +D + +LI + ++ + ++ + M +LG E + + +L R A
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170
Query: 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGY 206
++M +P T+N ++ G FL K A+ + M +RG D+ TY T++NG
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Query: 207 NRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266
+ +D A L +M++ IE V+ YTT+I + +DAL +F EM + ++PN
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290
Query: 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLK 326
VTY +L+ LC+ G+ + ++L +M+ER I P + F L+ K G L A +
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINP-NVVTFSALIDAFVKEGKLVEAEKLYD 349
Query: 327 AMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM 386
MI+ SI + Y LI FC + D A + + ++ K+ P +YN +
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF--PNVV------TYNTL 401
Query: 387 IQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445
I+ C + + FR++ ++G++ + V +N LI+G + G+ D A +I K M GV
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 446 PRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505
P D Y L++ + G+ A + + + P + ++E + + G+V+
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521
Query: 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLS 562
+ S+ KGVK N+ + ++ +G EEA M + G++PN +++L+
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581
Query: 563 EKGKTIAAVKLL 574
G A+ +L+
Sbjct: 582 RDGDKAASAELI 593
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 137/548 (25%), Positives = 252/548 (45%), Gaps = 48/548 (8%)
Query: 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156
L+E K+G ++E++ + + GV ++ Y+AL + + ++ A+ F++M G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397
Query: 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216
+ P TY++++ F KL+TA+ F +M G+ L V YN++ING+ +F + AE
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL 276
AEM K +EPTV++YT+++ GY + + + ALR++ EM + P+ T+T LL GL
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517
Query: 277 CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE 336
AG + + K+ EM E + P R++
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPN-----------------------------RVT---- 544
Query: 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396
Y ++IE +C+ +A + L ++ EK I+ P + SY P+I LC GQ
Sbjct: 545 ---YNVMIEGYCEEGDMSKAFEFLKEMTEKGIV--P------DTYSYRPLIHGLCLTGQA 593
Query: 397 GKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICL 455
+A++F L K L+ + + L+ G +EG + A + + M +RGV D Y L
Sbjct: 594 SEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVL 653
Query: 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515
I+ L+ + L M + G P ++ S++++ + G + A + M+ +G
Sbjct: 654 IDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC 713
Query: 516 KENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVK 572
N ++ L G V EA M SVPN + L +L++ +
Sbjct: 714 VPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAV 773
Query: 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN 632
L + + + + A+Y ++ G+ A ++ +++ G D + +I L
Sbjct: 774 ELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELC 833
Query: 633 QEGNTKQA 640
+ + K+A
Sbjct: 834 RRNDVKKA 841
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 227/491 (46%), Gaps = 31/491 (6%)
Query: 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112
+HD T+ I R +L+ A +L M K G + D L+ Y + ++V
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174
Query: 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172
+ D M ++G + ++ L + + A ++M+ G +P TY ++ G
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Query: 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232
++ A+ + M+ I DVV YNT+I+G ++K MD+A LF EM K I P V
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294
Query: 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292
+Y+++I R DA R+ +M + PN VT++AL+ GK+VE +K+ EM
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354
Query: 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEM 352
++R I P D + L+ C L+ A + + MI Y LI+ FCKA+
Sbjct: 355 IKRSIDP-DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 353 YDRAIKLLDKLVEK-------------------------EIILRPQSTLDMEAS--SYNP 385
+ ++L ++ ++ +++ + ++ + + +YN
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473
Query: 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDP--VAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443
++ LC NG+ KA + F L ++ ++P +N +I G K G + +E+ + +
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYL-QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTA 503
GV + AY +I + RKG +A + L M EDG P S + +++ + DG + +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 504 SRVMKSMVEKG 514
+ ++K M G
Sbjct: 593 AELIKEMRSCG 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 217/443 (48%), Gaps = 13/443 (2%)
Query: 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDM 82
+ LV + K S+ + R VE F + T+ ++ ++ + G+ A +L M
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETG--FQPNEVTYGPVLNVMCKSGQTALAMELLRKM 254
Query: 83 PKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRY 142
++ ++ D + ++I+ K G + + +F+ M+ G + + +Y+ L GR+
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314
Query: 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTM 202
+ M+ I P T++V++ F KL A + ++M RGI+ + +TYN++
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374
Query: 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262
I+G+ + +++EA ++ M K +P ++++ +I GY R DD L +F EM V
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322
N VTY L+ G C +GK+ +K+ +EMV R + P D + LL C +G L A
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP-DIVSYKILLDGLCDNGELEKAL 493
Query: 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382
++ + + + + G Y I+I C A D A L L P + ++A +
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSL--------PLKGVKLDARA 545
Query: 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441
YN MI LC KA+I FR++ ++G D + +N LIR H + + +A E+++ M
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605
Query: 442 RRGVPRDADAYICLIESYLRKGE 464
G P D + + ++ + L GE
Sbjct: 606 SSGFPADV-STVKMVINMLSSGE 627
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 662 | ||||||
| 255580313 | 753 | pentatricopeptide repeat-containing prot | 0.998 | 0.877 | 0.787 | 0.0 | |
| 297741611 | 772 | unnamed protein product [Vitis vinifera] | 0.998 | 0.856 | 0.776 | 0.0 | |
| 225440005 | 763 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.866 | 0.776 | 0.0 | |
| 449464322 | 760 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.864 | 0.776 | 0.0 | |
| 449507993 | 760 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.992 | 0.864 | 0.776 | 0.0 | |
| 224111048 | 760 | predicted protein [Populus trichocarpa] | 1.0 | 0.871 | 0.764 | 0.0 | |
| 297827231 | 756 | pentatricopeptide repeat-containing prot | 0.978 | 0.857 | 0.736 | 0.0 | |
| 15228104 | 757 | pentatricopeptide repeat-containing prot | 0.978 | 0.856 | 0.736 | 0.0 | |
| 356512321 | 733 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.903 | 0.730 | 0.0 | |
| 356528212 | 738 | PREDICTED: pentatricopeptide repeat-cont | 0.980 | 0.879 | 0.736 | 0.0 |
| >gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/662 (78%), Positives = 586/662 (88%), Gaps = 1/662 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IR LVP FDH+LVYNVLH A+NSEHALQFFRWVERAGLF +DR+TH+
Sbjct: 87 MANRPWTTRLQNSIRNLVPHFDHSLVYNVLHAARNSEHALQFFRWVERAGLFKNDRDTHM 146
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMPKKGV+WDE MF VLIESYGK GIVQE+VKIF+ M +L
Sbjct: 147 KIIEILGRASKLNHARCILLDMPKKGVEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNEL 206
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVERS+KSYDALFK+ILRRGRYMMAKR FNKML++GI+PTRHTYN+MLWGFFLSL+LETA
Sbjct: 207 GVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLETA 266
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RF++DMK+RGIS DVVTYNTMING+ RFKKM+EAEKLF EMK KNI PTVISYTTMIKG
Sbjct: 267 MRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKG 326
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YVAV+R DD LR+ +EMKSF++KPN TY+ LLPGLCDA KM E + +L EMV R++ PK
Sbjct: 327 YVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPK 386
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F++LL QCK+G L AA DVL M+RL IPTEAGHYG+LIENFCKAE YDRA+K L
Sbjct: 387 DNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGHYGVLIENFCKAEEYDRAVKYL 446
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
DKL+EKEIILRPQSTL++E+++YNPMIQ+LC +GQTGKAEIFFRQLMKKGV DP+AFNNL
Sbjct: 447 DKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMKKGVQDPLAFNNL 506
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
I GH+KEG PDSAFEI KIMG+RGVPRDADAY +IESYLRKGEPADAKTALD M+EDGH
Sbjct: 507 ICGHAKEGYPDSAFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADAKTALDGMLEDGH 566
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
P S+FRSVMESLFEDGRVQTASRVMKSMVEKGVKEN+DLV KILEALLMRGHVEEALG
Sbjct: 567 VPDPSVFRSVMESLFEDGRVQTASRVMKSMVEKGVKENMDLVGKILEALLMRGHVEEALG 626
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RI+L+MQSG NFD LLSVLSEKGKTIAA+KLLDF L RD +D SY+KVLDALLAAG
Sbjct: 627 RIELLMQSGFHVNFDDLLSVLSEKGKTIAALKLLDFALERDFNLDFKSYDKVLDALLAAG 686
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR-GEMSRGSQKEK 659
KTLNAYSIL KIM+KGGV+DW SS LI LNQEGNTKQADILSRMI+ GE S ++K K
Sbjct: 687 KTLNAYSILCKIMQKGGVSDWSSSKDLIKSLNQEGNTKQADILSRMIKGGEKSHENKKGK 746
Query: 660 KQ 661
KQ
Sbjct: 747 KQ 748
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1081 bits (2796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/662 (77%), Positives = 586/662 (88%), Gaps = 1/662 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA RAWTTRLQN IR+LVPQFDH+LV+NVLHG++NS+HALQFFRWVERAGLF HDR+THL
Sbjct: 97 MANRAWTTRLQNSIRSLVPQFDHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHL 156
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMPKKGV+WDED+F +LI+SYGK GIVQESVK+F MK+L
Sbjct: 157 KIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKEL 216
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSYDALFK+ILRRGRYMMAKRYFN ML+EG+ PT HTYN+M+WGFFLSLK+ETA
Sbjct: 217 GVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETA 276
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RFFE+MK R IS DVVTYNTMINGY R KKM+EAEK F EMK +NIEPTVISYTTMIKG
Sbjct: 277 NRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKG 336
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V R DD LR+F+EMKSF +KPNAVTY+ LLPGLCD KM+E Q V++EMVERYI PK
Sbjct: 337 YVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPK 396
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+L+ QCK+G L+AAADVLKAMIRLSIPTEAGHYG+LIENFCK+ +YDRA+KLL
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
DKL+EKEIILRPQ++L+ME+S YN +I++LC++GQT KAE FRQLMKKGV DP+AFNNL
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNL 516
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGHSKEG P+SAFEI+KIMGRR VPR+ADAY LIES+L+KGEPADAKTALD MIE+GH
Sbjct: 517 IRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGH 576
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
P SSLFRSVMESLFEDGR+QTASRVM +MVEKGVKEN+DLVAKILEALL+RGHVEEALG
Sbjct: 577 IPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALG 636
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RIDL+M +G P+FD LLSVL KGKTIAA+KLLDF L RD I +SYE VLDALL AG
Sbjct: 637 RIDLLMNNGCEPDFDGLLSVLCAKGKTIAALKLLDFGLERDYNISFSSYENVLDALLTAG 696
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMS-RGSQKEK 659
KTLNAYSIL KIM+KGG TDW S LI LN+EGNTKQADILSRMI+GE GS+K K
Sbjct: 697 KTLNAYSILCKIMQKGGATDWSSCKDLIRSLNEEGNTKQADILSRMIKGEEKVHGSKKGK 756
Query: 660 KQ 661
KQ
Sbjct: 757 KQ 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/662 (77%), Positives = 586/662 (88%), Gaps = 1/662 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA RAWTTRLQN IR+LVPQFDH+LV+NVLHG++NS+HALQFFRWVERAGLF HDR+THL
Sbjct: 97 MANRAWTTRLQNSIRSLVPQFDHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHL 156
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMPKKGV+WDED+F +LI+SYGK GIVQESVK+F MK+L
Sbjct: 157 KIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKEL 216
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSYDALFK+ILRRGRYMMAKRYFN ML+EG+ PT HTYN+M+WGFFLSLK+ETA
Sbjct: 217 GVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETA 276
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RFFE+MK R IS DVVTYNTMINGY R KKM+EAEK F EMK +NIEPTVISYTTMIKG
Sbjct: 277 NRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKG 336
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V R DD LR+F+EMKSF +KPNAVTY+ LLPGLCD KM+E Q V++EMVERYI PK
Sbjct: 337 YVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPK 396
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+L+ QCK+G L+AAADVLKAMIRLSIPTEAGHYG+LIENFCK+ +YDRA+KLL
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
DKL+EKEIILRPQ++L+ME+S YN +I++LC++GQT KAE FRQLMKKGV DP+AFNNL
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNL 516
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGHSKEG P+SAFEI+KIMGRR VPR+ADAY LIES+L+KGEPADAKTALD MIE+GH
Sbjct: 517 IRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGH 576
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
P SSLFRSVMESLFEDGR+QTASRVM +MVEKGVKEN+DLVAKILEALL+RGHVEEALG
Sbjct: 577 IPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALG 636
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RIDL+M +G P+FD LLSVL KGKTIAA+KLLDF L RD I +SYE VLDALL AG
Sbjct: 637 RIDLLMNNGCEPDFDGLLSVLCAKGKTIAALKLLDFGLERDYNISFSSYENVLDALLTAG 696
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMS-RGSQKEK 659
KTLNAYSIL KIM+KGG TDW S LI LN+EGNTKQADILSRMI+GE GS+K K
Sbjct: 697 KTLNAYSILCKIMQKGGATDWSSCKDLIRSLNEEGNTKQADILSRMIKGEEKVHGSKKGK 756
Query: 660 KQ 661
KQ
Sbjct: 757 KQ 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/657 (77%), Positives = 569/657 (86%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IR+LVPQFDHNLVYNVLH AK SEHAL FFRWVERAGLF HDRETH
Sbjct: 99 MANREWTTRLQNSIRSLVPQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHF 158
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMP KGVQWDED+F VLIESYGK GIVQE+VKIF MK+L
Sbjct: 159 KIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKEL 218
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVERSVKSYDALFK I+RRGRYMMAKRYFN ML+EGIEP RHTYNVMLWGFFLSL+LETA
Sbjct: 219 GVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETA 278
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RF+EDMKSRGIS DVVTYNTMINGY RFK M+EAE+ F EMK KNI PTVISYTTMIKG
Sbjct: 279 KRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKG 338
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V RADDALR+F+EMK+ KPN +TY+ LLPGLCDA K+ E +K+L EMV R+ PK
Sbjct: 339 YVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPK 398
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+LL QCK G L+AA VLKAMIRLSIPTEAGHYGILIEN CKA MYD+A+KLL
Sbjct: 399 DNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLL 458
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
+ LVEKEIILRPQSTL+MEAS+YN +IQ+LC++GQTGKA+ FFRQL+KKG+ D VAFNNL
Sbjct: 459 ENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNL 518
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPD AFE++KIMGRRGV RDA++Y LI+SYL KGEPADAKTALDSMIE+GH
Sbjct: 519 IRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGH 578
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
SP S+LFRSVMESLF DGRVQTASRVM SM++KG+ ENLDLVAKILEAL MRGH EEALG
Sbjct: 579 SPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALG 638
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RI+L+M P+F+SLLSVL EKGKT +A KLLDF L R+C I+ +SYEKVLDALL AG
Sbjct: 639 RINLLMNCNCPPDFNSLLSVLCEKGKTTSAFKLLDFGLERECNIEFSSYEKVLDALLGAG 698
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657
KTLNAY+IL KIMEKGG DW S D LI LNQEGNTKQADILSRMI+G + S+K
Sbjct: 699 KTLNAYAILCKIMEKGGAKDWSSCDDLIKSLNQEGNTKQADILSRMIKGGDRKRSKK 755
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g37230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/657 (77%), Positives = 569/657 (86%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IR+LVPQFDHNLVYNVLH AK SEHAL FFRWVERAGLF HDRETH
Sbjct: 99 MANREWTTRLQNSIRSLVPQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHF 158
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K+IEILGR KLNHARCILLDMP KGVQWDED+F VLIESYGK GIVQE+VKIF MK+L
Sbjct: 159 KIIEILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKEL 218
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVERSVKSYDALFK I+RRGRYMMAKRYFN ML+EGIEP RHTYNVMLWGFFLSL+LETA
Sbjct: 219 GVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETA 278
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
RF+EDMKSRGIS DVVTYNTMINGY RFK M+EAE+ F EMK KNI PTVISYTTMIKG
Sbjct: 279 KRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKG 338
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
YV+V RADDALR+F+EMK+ KPN +TY+ LLPGLCDA K+ E +K+L EMV R+ PK
Sbjct: 339 YVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPK 398
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+FM+LL QCK G L+AA VLKAMIRLSIPTEAGHYGILIEN CKA MYD+A+KLL
Sbjct: 399 DNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLL 458
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
+ LVEKEIILRPQSTL+MEAS+YN +IQ+LC++GQTGKA+ FFRQL+KKG+ D VAFNNL
Sbjct: 459 ENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNL 518
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPD AFE++KIMGRRGV RDA++Y LI+SYL KGEPADAKTALDSMIE+GH
Sbjct: 519 IRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGH 578
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
SP S+LFRSVMESLF DGRVQTASRVM SM++KG+ ENLDLVAKILEAL MRGH EEALG
Sbjct: 579 SPDSALFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALG 638
Query: 541 RIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
RI+L+M P+F+SLLSVL EKGKT +A KLLDF L R+C I+ +SYEKVLDALL AG
Sbjct: 639 RINLLMNCNCPPDFNSLLSVLCEKGKTTSAFKLLDFGLERECNIEFSSYEKVLDALLGAG 698
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657
KTLNAY+IL KIMEKGG DW S D LI LNQEGNTKQADILSRMI+G + S+K
Sbjct: 699 KTLNAYAILCKIMEKGGAKDWSSCDDLIKSLNQEGNTKQADILSRMIKGGDRKRSKK 755
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa] gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1057 bits (2733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/663 (76%), Positives = 578/663 (87%), Gaps = 1/663 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
MA R WTTRLQN IRALVP+FDH+LVYNVLHGA+ +HALQFFRWVERAGL HDRETH+
Sbjct: 93 MANRDWTTRLQNSIRALVPEFDHSLVYNVLHGARKPDHALQFFRWVERAGLIQHDRETHM 152
Query: 61 KMIEILGRVGKLNHARCILL-DMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119
K+I+ILGR LNHARCI+L DMPKKG + DEDMF +LI+SYGK GIVQESVK+F MK+
Sbjct: 153 KIIQILGRYSMLNHARCIVLEDMPKKGFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKE 212
Query: 120 LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179
LGVERSVKSY+ALFK+I+R+GRYMMAKR+FNKML EGI PTRHTYNV++WGFFLS++L T
Sbjct: 213 LGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLRT 272
Query: 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIK 239
A+RF+EDMK RGIS DVVTYNTMINGY R K+M+EAEKLFAEMK K+I PTVISYTTMIK
Sbjct: 273 AVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIK 332
Query: 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPP 299
GY AV+R +D LR+ +EMKS +KPN VTYT LLP LCDAGKM E + +L+EMV R I P
Sbjct: 333 GYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAP 392
Query: 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKL 359
KDNS+F+KLL QCK+G L AA DVL MI+LSIP+EAGHYG+LIENFCKAE YD+A+K
Sbjct: 393 KDNSIFLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIENFCKAEEYDQAVKF 452
Query: 360 LDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNN 419
+DKL+E +IILRPQSTL+ME+ +YNP+IQ+LC +GQTGKAEI FRQL+KKGV DP+AFNN
Sbjct: 453 VDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTGKAEILFRQLLKKGVEDPLAFNN 512
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479
LI GH+KEG PDSAFEI+KIMGR+G+PRDADAY LIESYLRKGEPADAKTALDSMIEDG
Sbjct: 513 LICGHAKEGTPDSAFEILKIMGRKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIEDG 572
Query: 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539
H P SS+FRSVMESL+EDGRVQTASRVMKSMVEKGVKEN+DLVAKILEALLMRGH EEAL
Sbjct: 573 HLPDSSVFRSVMESLYEDGRVQTASRVMKSMVEKGVKENMDLVAKILEALLMRGHEEEAL 632
Query: 540 GRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599
GRIDL+M S NFDSLLS+LSEKGKTIAA+KLLDF L RDC ID SY+KVLDALLAA
Sbjct: 633 GRIDLLMSSQCNVNFDSLLSILSEKGKTIAALKLLDFGLQRDCDIDFKSYDKVLDALLAA 692
Query: 600 GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQKEK 659
GKTLNAYSIL KIMEKGGVT W+S + LI LNQEGNTKQADILSRMI+G+ K+
Sbjct: 693 GKTLNAYSILCKIMEKGGVTSWRSYEDLIKSLNQEGNTKQADILSRMIKGDDKSHENKKG 752
Query: 660 KQK 662
K+K
Sbjct: 753 KKK 755
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/650 (73%), Positives = 565/650 (86%), Gaps = 2/650 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 94 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 153
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 154 KMIKMLGEVQKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 213
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY+ LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 214 GVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 273
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFF+DMK+RGIS D VTYNT+INGY RFKKMDEAEKLF EMK N EP+V++YTTMIKG
Sbjct: 274 LRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIKG 333
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y++V+R DD LRIF+EM+SF ++PNA TY+ LLPGLCD GKMVE + +L+ M+ ++I PK
Sbjct: 334 YLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMAKHIAPK 393
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 394 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 453
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 454 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 513
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNP+S++EI+KIM RRGVPR+A+AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 514 IRGHAKEGNPESSYEILKIMSRRGVPREANAYELLIKSYMSKGEPGDAKTALDSMVEDGH 573
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P S+LFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 574 VPDSALFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 633
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD +D +SY+KVLDALL
Sbjct: 634 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLDFSSYDKVLDALLG 693
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+
Sbjct: 694 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK 743
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230 gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana] gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana] gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana] gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/650 (73%), Positives = 564/650 (86%), Gaps = 2/650 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 95 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 154
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 155 KMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 214
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY++LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFFEDMK+RGIS D T+NTMING+ RFKKMDEAEKLF EMK I P+V+SYTTMIKG
Sbjct: 275 LRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKG 334
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y+AV+R DD LRIF+EM+S ++PNA TY+ LLPGLCDAGKMVE + +L+ M+ ++I PK
Sbjct: 335 YLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 395 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 454
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 455 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 514
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPDS++EI+KIM RRGVPR+++AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 515 IRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGH 574
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P SSLFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 575 VPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 634
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD ++ +SY+KVLDALL
Sbjct: 635 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFSSYDKVLDALLG 694
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+
Sbjct: 695 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK 744
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/665 (73%), Positives = 567/665 (85%), Gaps = 3/665 (0%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M+ RAWTTRLQN IR+LVP+FD +LVYNVLHGA + EHALQF+RWVERAGLF H ET L
Sbjct: 64 MSNRAWTTRLQNSIRSLVPEFDPSLVYNVLHGAASPEHALQFYRWVERAGLFTHTPETTL 123
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQ---WDEDMFEVLIESYGKKGIVQESVKIFDIM 117
K+++ILGR KLNHARCIL + + GV ED F LI+SYG+ GIVQESVK+F M
Sbjct: 124 KIVQILGRYSKLNHARCILFNDTRGGVSRAAVTEDAFVSLIDSYGRAGIVQESVKLFKKM 183
Query: 118 KQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKL 177
K+LG++R+VKSYDALFK+ILRRGRYMMAKRY+N ML EG++PTRHT+N++LWG FLSL+L
Sbjct: 184 KELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAMLLEGVDPTRHTFNILLWGMFLSLRL 243
Query: 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237
+TA+RF+EDMKSRGI DVVTYNT+INGY RFKK+DEAEKLF EMK ++I P VIS+TTM
Sbjct: 244 DTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTM 303
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297
+KGYVA R DDAL++F+EMK VKPN VT++ LLPGLCDA KM E + VL EMVERYI
Sbjct: 304 LKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVERYI 363
Query: 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAI 357
PKDN++FMK++ QCK+G L+AAADVLKAM+RLSIPTEAGHYG+LIE+FCKA +YD+A
Sbjct: 364 APKDNALFMKMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGHYGVLIESFCKANVYDKAE 423
Query: 358 KLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAF 417
KLLDKL+EKEI+LRPQ+ +ME S+YN MI +LC +G+TGKAE FFRQL+KKGV D VAF
Sbjct: 424 KLLDKLIEKEIVLRPQNDSEMEPSAYNLMIGYLCEHGRTGKAETFFRQLLKKGVQDSVAF 483
Query: 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477
NNLIRGHSKEGNPDSAFEI+KIMGRRGV RD D+Y LIESYLRKGEPADAKTALD M+E
Sbjct: 484 NNLIRGHSKEGNPDSAFEIMKIMGRRGVARDVDSYRLLIESYLRKGEPADAKTALDGMLE 543
Query: 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537
GH P SSL+RSVMESLF+DGRVQTASRVMKSMVEKG KEN+DLV KILEALL+RGHVEE
Sbjct: 544 SGHLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGAKENMDLVLKILEALLLRGHVEE 603
Query: 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL 597
ALGRIDL+M +G P+FD LLSVL EK KTIAA+KLLDF L RDCIID + Y+KVLDALL
Sbjct: 604 ALGRIDLLMHNGCEPDFDHLLSVLCEKEKTIAALKLLDFVLERDCIIDFSIYDKVLDALL 663
Query: 598 AAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657
AAGKTLNAYSIL KI+EKGG TDW S D+LI LNQEGNTKQAD+LSRMI+G R ++
Sbjct: 664 AAGKTLNAYSILCKILEKGGSTDWSSRDELIKSLNQEGNTKQADVLSRMIKGTDGRTLRR 723
Query: 658 EKKQK 662
K+K
Sbjct: 724 GGKRK 728
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/657 (73%), Positives = 560/657 (85%), Gaps = 8/657 (1%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M+ RAWTTRLQN IR+LVP+FD +LVYNVLHGA + EHALQF+RWVERAGLF H ET L
Sbjct: 64 MSNRAWTTRLQNSIRSLVPEFDPSLVYNVLHGAASPEHALQFYRWVERAGLFTHTPETTL 123
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQ---WDEDMFEVLIESYGKKGIVQESVKIFDIM 117
K+++ILGR KLNHARCIL D + G ED F LI+SYG+ GIVQESVK+F M
Sbjct: 124 KIVQILGRYSKLNHARCILFDDTRGGASRATVTEDAFVSLIDSYGRAGIVQESVKLFKKM 183
Query: 118 KQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKL 177
K+LGV+R+VKSYDALFK+ILRRGRYMMAKRY+N ML+E +EPTRHTYN++LWG FLSL+L
Sbjct: 184 KELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAMLNESVEPTRHTYNILLWGMFLSLRL 243
Query: 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237
+TA+RF+EDMKSRGI DVVTYNT+INGY RFKK++EAEKLF EMK ++I P VIS+TTM
Sbjct: 244 DTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTTM 303
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297
+KGYVA + DDAL++F+EMK VKPNAVT++ LLPGLCDA KM E + VL EMVERYI
Sbjct: 304 LKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVERYI 363
Query: 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAI 357
PKDN+VFMKL+ QCK+G L+AA DVLKAMIRLSIPTEAGHYG+LIENFCKA +YD+A
Sbjct: 364 APKDNAVFMKLMSCQCKAGDLDAAGDVLKAMIRLSIPTEAGHYGVLIENFCKANLYDKAE 423
Query: 358 KLLDKLVEKEIILRPQST-----LDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL 412
KLLDK++EKEI+LR ++ +ME S+YN MI +LC +G+TGKAE FFRQLMKKGV
Sbjct: 424 KLLDKMIEKEIVLRQKNAYETELFEMEPSAYNLMIGYLCEHGRTGKAETFFRQLMKKGVQ 483
Query: 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472
D V+FNNLI GHSKEGNPDSAFEI+KIMGRRGV RDAD+Y LIESYLRKGEPADAKTAL
Sbjct: 484 DSVSFNNLICGHSKEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTAL 543
Query: 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR 532
D M+E GH P SSL+RSVMESLF+DGRVQTASRVMKSMVEKGVKEN+DLV+K+LEALLMR
Sbjct: 544 DGMLESGHLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGVKENMDLVSKVLEALLMR 603
Query: 533 GHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592
GHVEEALGRI L+M +G P+FD LLSVL EK KTIAA+KLLDF L RDCIID + Y+KV
Sbjct: 604 GHVEEALGRIHLLMLNGCEPDFDHLLSVLCEKEKTIAALKLLDFVLERDCIIDFSIYDKV 663
Query: 593 LDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649
LDALLAAGKTLNAYSIL KI+EKGG TDW S D+LI LNQEGNTKQAD+LSRMI+G
Sbjct: 664 LDALLAAGKTLNAYSILCKILEKGGSTDWSSRDELIKSLNQEGNTKQADVLSRMIKG 720
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 662 | ||||||
| TAIR|locus:2049756 | 757 | AT2G37230 [Arabidopsis thalian | 0.990 | 0.866 | 0.728 | 6.7e-262 | |
| TAIR|locus:2205609 | 710 | AT1G02060 [Arabidopsis thalian | 0.960 | 0.895 | 0.322 | 1.9e-92 | |
| TAIR|locus:2009787 | 806 | AT1G30290 "AT1G30290" [Arabido | 0.974 | 0.800 | 0.230 | 4.8e-50 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.774 | 0.560 | 0.242 | 7.8e-49 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.868 | 0.753 | 0.237 | 1.9e-48 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.762 | 0.801 | 0.250 | 2.6e-47 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.808 | 0.850 | 0.248 | 1.4e-46 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.919 | 0.807 | 0.247 | 5.1e-46 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.663 | 0.681 | 0.270 | 1.6e-45 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.876 | 0.795 | 0.24 | 1.1e-44 |
| TAIR|locus:2049756 AT2G37230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2520 (892.1 bits), Expect = 6.7e-262, P = 6.7e-262
Identities = 481/660 (72%), Positives = 569/660 (86%)
Query: 1 MAERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHL 60
M RAWTTRLQN IR LVP++DH+LVYNVLHGAK EHALQFFRW ER+GL HDR+TH+
Sbjct: 95 MDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHM 154
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
KMI++LG V KLNHARCILLDMP+KGV WDEDMF VLIESYGK GIVQESVKIF MK L
Sbjct: 155 KMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDL 214
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
GVER++KSY++LFK+ILRRGRYMMAKRYFNKM+SEG+EPTRHTYN+MLWGFFLSL+LETA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+RFFEDMK+RGIS D T+NTMING+ RFKKMDEAEKLF EMK I P+V+SYTTMIKG
Sbjct: 275 LRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKG 334
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
Y+AV+R DD LRIF+EM+S ++PNA TY+ LLPGLCDAGKMVE + +L+ M+ ++I PK
Sbjct: 335 YLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
DNS+F+KLL Q K+G + AA +VLKAM L++P EAGHYG+LIEN CKA Y+RAIKLL
Sbjct: 395 DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLL 454
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420
D L+EKEIILR Q TL+ME S+YNP+I++LC+NGQT KAE+ FRQLMK+GV D A NNL
Sbjct: 455 DTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNL 514
Query: 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480
IRGH+KEGNPDS++EI+KIM RRGVPR+++AY LI+SY+ KGEP DAKTALDSM+EDGH
Sbjct: 515 IRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGH 574
Query: 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLVAKILEALLMRGHVEEA 538
P SSLFRSV+ESLFEDGRVQTASRVM M++K G+++N+DL+AKILEALLMRGHVEEA
Sbjct: 575 VPDSSLFRSVIESLFEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEA 634
Query: 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598
LGRIDL+ Q+G + DSLLSVLSEKGKTIAA+KLLDF L RD ++ +SY+KVLDALL
Sbjct: 635 LGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDLSLEFSSYDKVLDALLG 694
Query: 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQKE 658
AGKTLNAYS+L KIMEKG TDWKSSD+LI LNQEGNTKQAD+LSRMI+ +G +K+
Sbjct: 695 AGKTLNAYSVLCKIMEKGSSTDWKSSDELIKSLNQEGNTKQADVLSRMIK--KGQGIKKQ 752
|
|
| TAIR|locus:2205609 AT1G02060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 210/651 (32%), Positives = 351/651 (53%)
Query: 6 WTTRLQNKIRALVPQ--FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMI 63
W+ L++ + +L P V L K L+FF WV G F+H ++ M+
Sbjct: 49 WSDELESSLSSLHPSQTISRTTVLQTLRLIKVPADGLRFFDWVSNKG-FSHKEQSFFLML 107
Query: 64 EILGRVGKLNHARCILLDMPKKG---VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
E LGR LN AR L + ++ V+ + F LI SYG G+ QESVK+F MKQ+
Sbjct: 108 EFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQM 167
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKML-SEGIEPTRHTYNVMLWGFFLSLKLET 179
G+ SV ++++L ++L+RGR MA F++M + G+ P +T+N ++ GF + ++
Sbjct: 168 GISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDE 227
Query: 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK--NIEPTVISYTTM 237
A R F+DM+ + DVVTYNT+I+G R K+ A + + M +K ++ P V+SYTT+
Sbjct: 228 AFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTL 287
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL---REMVE 294
++GY + D+A+ +F +M S +KPNAVTY L+ GL +A + E++ +L +
Sbjct: 288 VRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFT 347
Query: 295 RYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYD 354
+ P D F L+ C +GHL+AA V + M+ + + ++ Y +LI C +D
Sbjct: 348 TFAP--DACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFD 405
Query: 355 RAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP 414
RA L ++L EKE++L + A++YNPM ++LC NG+T +AE FRQLMK+GV DP
Sbjct: 406 RAETLFNELFEKEVLLGKDECKPL-AAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDP 464
Query: 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDS 474
++ LI GH +EG A+E++ +M RR D + Y LI+ L+ GE A L
Sbjct: 465 PSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQR 524
Query: 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534
M+ + P ++ F SV+ L + + ++ M+EK +++N+DL +++ L
Sbjct: 525 MLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQ 584
Query: 535 VEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594
E+A + L+ +G + + LL L E K + A L+ FCL + ++D+ + V++
Sbjct: 585 KEKAFLIVRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIE 644
Query: 595 ALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSR 645
L + A+S+ +++E G L L G ++ +S+
Sbjct: 645 GLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQFVSK 695
|
|
| TAIR|locus:2009787 AT1G30290 "AT1G30290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 4.8e-50, P = 4.8e-50
Identities = 152/660 (23%), Positives = 311/660 (47%)
Query: 5 AWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIE 64
+W + + ++R L+ + V VL + AL+FF W +R + HD + M+E
Sbjct: 156 SWNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLE 215
Query: 65 ILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVER 124
+L + +R +L+ M ++G+ + F ++ SY + G +++++K+ +M++ GVE
Sbjct: 216 VLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEP 275
Query: 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFF 184
++ + + +R R A R+ +M GI P TYN M+ G+ ++E AI
Sbjct: 276 NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELL 335
Query: 185 EDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM-KEKNIEPTVISYTTMIKGYVA 243
EDM S+G D V+Y T++ + K++ E L +M KE + P ++Y T+I
Sbjct: 336 EDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTK 395
Query: 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNS 303
+ AD+AL + + + + + Y+A++ LC G+M E + ++ EM+ + P D
Sbjct: 396 HDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVV 455
Query: 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363
+ ++ C+ G ++ A +L+ M Y L+ C+ A ++++
Sbjct: 456 TYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMN-- 513
Query: 364 VEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD-PVAFNNLIR 422
+ +E P S +Y+ ++ L G+ +A R+++ KG PV N L++
Sbjct: 514 MSEEHWWSPNSI------TYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQ 567
Query: 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSM-IEDGHS 481
++G A + ++ +G + + +I + + E A + LD M + + H+
Sbjct: 568 SLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHA 627
Query: 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541
+ + +++++L + GR+ A+ +MK M+ KG+ ++ G V++ +
Sbjct: 628 DVFT-YTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAI 686
Query: 542 IDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG 600
++ M+ ++ ++ L GK A LL L D + +++ L G
Sbjct: 687 LEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKG 746
Query: 601 KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQAD-ILSRMI-RGEMSRGSQKE 658
L+AY + ++ + + D K +KL L +G +AD ++ R++ RG +S S K+
Sbjct: 747 VPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQSLKQ 806
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 7.8e-49, P = 7.8e-49
Identities = 128/527 (24%), Positives = 261/527 (49%)
Query: 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153
+ L+ S + G+V E +++ M + V ++ +Y+ + + G A +Y +K++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 154 SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMD 213
G++P TY ++ G+ L++A + F +M +G + V Y +I+G +++D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 214 EAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALL 273
EA LF +MK+ PTV +YT +IK ER +AL + EM+ +KPN TYT L+
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI 333
LC K + +++L +M+E+ + P + + L+ CK G + A DV++ M +
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALINGYCKRGMIEDAVDVVELMESRKL 424
Query: 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393
Y LI+ +CK+ ++ +A+ +L+K++E++++ P + +YN +I C +
Sbjct: 425 SPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVL--P------DVVTYNSLIDGQCRS 475
Query: 394 GQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY 452
G A + +G++ D + ++I K + A ++ + ++GV + Y
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535
Query: 453 ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVE 512
LI+ Y + G+ +A L+ M+ P S F +++ L DG+++ A+ + + MV+
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595
Query: 513 KGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIA 569
G++ + ++ LL G + A R M+ SG+ P+ + + + +G+ +
Sbjct: 596 IGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD 655
Query: 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616
A ++ DL +Y ++ G+T A+ +L ++ + G
Sbjct: 656 AEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 1.9e-48, P = 1.9e-48
Identities = 141/594 (23%), Positives = 276/594 (46%)
Query: 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK-GV 87
V+ K+ AL+ F + + F H T+ +IE LG GK +L+DM + G
Sbjct: 13 VIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGN 72
Query: 88 QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147
E ++ +++YG+KG VQE+V +F+ M E +V SY+A+ +++ G + A +
Sbjct: 73 HMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHK 132
Query: 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYN 207
+ +M GI P +++ + + F + + A+R +M S+G ++VV Y T++ G+
Sbjct: 133 VYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFY 192
Query: 208 RFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD--DALRIFDEMKSFDVKPN 265
E +LF +M + + ++ +++ V ++ D + ++ D++ V PN
Sbjct: 193 EENFKAEGYELFGKMLASGVSLCLSTFNKLLR--VLCKKGDVKECEKLLDKVIKRGVLPN 250
Query: 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVL 325
TY + GLC G++ +++ ++E+ P D + L+ CK+ A L
Sbjct: 251 LFTYNLFIQGLCQRGELDGAVRMVGCLIEQG-PKPDVITYNNLIYGLCKNSKFQEAEVYL 309
Query: 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNP 385
M+ + ++ Y LI +CK M ++L +++V + + + +Y
Sbjct: 310 GKMVNEGLEPDSYTYNTLIAGYCKGGM----VQLAERIVGDAVF----NGFVPDQFTYRS 361
Query: 386 MIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444
+I LCH G+T +A F + + KG+ + + +N LI+G S +G A ++ M +G
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTAS 504
+ + + L+ + G +DA + MI G+ P F ++ +++ A
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481
Query: 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVL 561
++ M++ GV ++ +L L E+ + M++ G PN F+ LL L
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Query: 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615
K A+ LL+ + D ++ ++D G AY+ LF+ ME+
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYT-LFRKMEE 594
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 130/518 (25%), Positives = 247/518 (47%)
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K++ + ++ K + + M G+ + + +LI + ++ + ++ + M +L
Sbjct: 86 KLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKL 145
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
G E ++ + +L R A ++M G +P T+N ++ G FL K A
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+ + M ++G D+VTY ++NG + D A L +M++ +EP V+ Y T+I G
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
+ DDAL +F EM++ ++PN VTY++L+ LC+ G+ + ++L +M+ER I P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP- 324
Query: 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360
D F L+ K G L A + M++ SI Y LI FC + D A ++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNN 419
+ +V K P + +YN +I+ C + + FR++ ++G++ + V +N
Sbjct: 385 EFMVSKHCF--P------DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479
LI+G + G+ D A EI K M GVP + Y L++ + G+ A + +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539
P + ++E + + G+V+ + ++ KGVK ++ ++ +G EEA
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 540 GRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLL 574
M + G++PN +++L+ G A+ +L+
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 137/551 (24%), Positives = 259/551 (47%)
Query: 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120
K++ + ++ K + + M + +D + +LI + ++ + ++ + M +L
Sbjct: 85 KLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKL 144
Query: 121 GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180
G E + + +L R A ++M +P T+N ++ G FL K A
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204
Query: 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240
+ + M +RG D+ TY T++NG + +D A L +M++ IE V+ YTT+I
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264
Query: 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300
+ +DAL +F EM + ++PN VTY +L+ LC+ G+ + ++L +M+ER I P
Sbjct: 265 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP- 323
Query: 301 DNSV-FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKL 359
N V F L+ K G L A + MI+ SI + Y LI FC + D A +
Sbjct: 324 -NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 360 LDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFN 418
+ ++ K+ P +YN +I+ C + + FR++ ++G++ + V +N
Sbjct: 383 FELMISKDCF--PNVV------TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 434
Query: 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED 478
LI+G + G+ D A +I K M GVP D Y L++ + G+ A + + +
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Query: 479 GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538
P + ++E + + G+V+ + S+ KGVK N+ + ++ +G EEA
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554
Query: 539 LGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595
M + G++PN +++L+ G A+ +L+ + D ++ V++
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN- 613
Query: 596 LLAAGKTLNAY 606
+L G+ +Y
Sbjct: 614 MLHDGRLEKSY 624
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 5.1e-46, P = 5.1e-46
Identities = 155/627 (24%), Positives = 277/627 (44%)
Query: 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW 89
L + AL+ F + F+ + + +++ LGR G + + IL DM +
Sbjct: 57 LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116
Query: 90 DEDMFEVLIESYGKKGIVQESVKIFDIM-KQLGVERSVKSYDALFKLILRRGRYMMAKRY 148
F +LIESY + + E + + D M + G++ Y+ + L++ + +
Sbjct: 117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176
Query: 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR 208
KM GI+P T+NV++ + +L AI EDM S G+ D T+ T++ GY
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE 236
Query: 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD-VKPNAV 267
+D A ++ +M E + +S ++ G+ R +DAL EM + D P+
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296
Query: 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327
T+ L+ GLC AG + +++ M++ P D + ++ CK G + A +VL
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP-DVYTYNSVISGLCKLGEVKEAVEVLDQ 355
Query: 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387
MI Y LI CK + A +L L K I+ P + ++N +I
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL--P------DVCTFNSLI 407
Query: 388 QHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP 446
Q LC A F ++ KG D +N LI +G D A ++K M G
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRV 506
R Y LI+ + + + +A+ D M G S S + ++++ L + RV+ A+++
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527
Query: 507 MKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSE 563
M M+ +G K + +L G +++A + M +G P+ + +L+S L +
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Query: 564 KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKS 623
G+ A KLL + + +Y V+ L KT A ++ +++E+
Sbjct: 588 AGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAV 647
Query: 624 SDKLI-AGL-NQEGNTKQA-DILSRMI 647
S +++ GL N G ++A D L ++
Sbjct: 648 SYRIVFRGLCNGGGPIREAVDFLVELL 674
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 123/454 (27%), Positives = 222/454 (48%)
Query: 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDM 82
+ LV + K S+ + R VE F + T+ ++ ++ + G+ A +L M
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETG--FQPNEVTYGPVLNVMCKSGQTALAMELLRKM 254
Query: 83 PKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRY 142
++ ++ D + ++I+ K G + + +F+ M+ G + + +Y+ L GR+
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314
Query: 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTM 202
+ M+ I P T++V++ F KL A + ++M RGI+ + +TYN++
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374
Query: 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262
I+G+ + +++EA ++ M K +P ++++ +I GY R DD L +F EM V
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322
N VTY L+ G C +GK+ +K+ +EMV R + P D + LL C +G L A
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP-DIVSYKILLDGLCDNGELEKAL 493
Query: 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382
++ + + + + G Y I+I C A D A L L P + ++A +
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSL--------PLKGVKLDARA 545
Query: 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441
YN MI LC KA+I FR++ ++G D + +N LIR H + + +A E+++ M
Sbjct: 546 YNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605
Query: 442 RRGVPRDADAYICLIESYLRKGEPADAKTALDSM 475
G P D + ++ + L GE D K+ LD +
Sbjct: 606 SSGFPADVST-VKMVINMLSSGE-LD-KSFLDML 636
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 1.1e-44, P = 1.1e-44
Identities = 144/600 (24%), Positives = 277/600 (46%)
Query: 48 RAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107
R+G + + L+MI G V +L LD ++ +F++LI +Y + +
Sbjct: 125 RSGRLSDAQSCLLRMIRRSG-VSRLEIVNS--LDSTFSNCGSNDSVFDLLIRTYVQARKL 181
Query: 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167
+E+ + F +++ G S+ + +AL ++R G +A + ++ G+ +T N+M
Sbjct: 182 REAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIM 241
Query: 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNI 227
+ K+E F ++ +G+ D+VTYNT+I+ Y+ M+EA +L M K
Sbjct: 242 VNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGF 301
Query: 228 EPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQK 287
P V +Y T+I G + + A +F EM + P++ TY +LL C G +VE +K
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361
Query: 288 VLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347
V +M R + P D F ++ + +SG+L+ A ++ + + Y ILI+ +
Sbjct: 362 VFSDMRSRDVVP-DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420
Query: 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407
C+ M A+ L ++++ Q M+ +YN ++ LC G+A+ F ++
Sbjct: 421 CRKGMISVAMNLRNEML--------QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMT 472
Query: 408 KKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466
++ + D LI GH K GN +A E+ + M + + D Y L++ + + G+
Sbjct: 473 ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDID 532
Query: 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526
AK M+ P + ++ +L G + A RV M+ K +K + + ++
Sbjct: 533 TAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMI 592
Query: 527 EALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLS--VLSEK-GKTIAAVKLLDFCLGR 580
+ G+ + ++ M+ G VP+ +++L+ V E K VK ++ G
Sbjct: 593 KGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQG- 651
Query: 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640
+ D+ +Y +L + A +L K++E+G D + +I G + N +A
Sbjct: 652 GLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUU3 | PP190_ARATH | No assigned EC number | 0.7369 | 0.9788 | 0.8560 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 662 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 1e-18
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241
DVVTYNT+I+GY + K++EA KLF EMK++ I+P V +Y+ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 7e-18
Identities = 116/514 (22%), Positives = 196/514 (38%), Gaps = 102/514 (19%)
Query: 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK 127
G+ HA + + G + D D+ LI Y K G V + +FD M + R
Sbjct: 204 ARGREVHAHVV-----RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCI 254
Query: 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKLETAIRFFED 186
S++A+ G + F M ++P ++M + + +L R +
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDP-----DLMTITSVISACELLGDERLGRE 309
Query: 187 MKS----RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242
M G ++DV N++I Y EAEK+F+ M+ K+ +S+T MI GY
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYE 365
Query: 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN 302
D AL + M+ +V P+ +T ++L G + +V L E+ ER
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL-DVGVKLHELAER------- 417
Query: 303 SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDK 362
K +I + A LIE + K + D+A+++
Sbjct: 418 -----------------------KGLISYVVVANA-----LIEMYSKCKCIDKALEVFHN 449
Query: 363 LVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422
+ EK++I S+ +I L N + +A IFFRQ++ + V +
Sbjct: 450 IPEKDVI------------SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497
Query: 423 GHSKEGNPDSAFEIVKIMGRRGVPRDA-------DAYI-C-------------------- 454
++ G EI + R G+ D D Y+ C
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557
Query: 455 --LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVE 512
L+ Y+ G+ + A + M+E G +P F S++ + G V SM E
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 513 K-GVKENLDLVAKILEALLMRGHVEEALGRIDLM 545
K + NL A +++ L G + EA I+ M
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 7e-17
Identities = 87/434 (20%), Positives = 174/434 (40%), Gaps = 72/434 (16%)
Query: 39 ALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98
AL+ F +E F T+ ++E + + + + + G + D+ M ++
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 99 ESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE 158
+ K G++ ++ ++FD M ER++ S+ + ++ G Y A F +M +G +
Sbjct: 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 159 PTRHTYNVM------LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212
T+ VM L +L + +K+ G+ D +I+ Y++ +
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLHCCV-----LKT-GVVGDTFVSCALIDMYSKCGDI 275
Query: 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
++A +F M EK T +++ +M+ GY +++AL ++ EM
Sbjct: 276 EDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEM--------------- 316
Query: 273 LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332
D+G + D F ++ + + L A +IR
Sbjct: 317 ----RDSGVSI-----------------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392
P + L++ + K + A + D++ K +I S+N +I +
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI------------SWNALIAGYGN 403
Query: 393 NGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSKEGNPDSAFEIVKIMGR--RGVPRDA 449
+G+ KA F +++ +GV + V F ++ G + +EI + M R PR A
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-A 462
Query: 450 DAYICLIESYLRKG 463
Y C+IE R+G
Sbjct: 463 MHYACMIELLGREG 476
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 5e-16
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278
P V++Y T+I GY + ++AL++F+EMK +KPN TY+ L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 8e-16
Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 27/270 (10%)
Query: 33 AKNSEHALQFFR--WVERAGLFNHDRETHLKMIEILG--RVGKLNHARCILLDMPKKGVQ 88
A N A FR W + + L+ LG R G+ H C+L K GV
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC-CVL----KTGVV 256
Query: 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRY 148
D + LI+ Y K G ++++ +FD M E++ +++++ G A
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR 208
+ +M G+ + T+++M+ F LE A + + G LD+V +++ Y++
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT 268
+ +M++A +F M KN+ IS+ +I GY R A+ +F+ M + V PN VT
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
Query: 269 YTALL-----PGLCDAGK-----MVEVQKV 288
+ A+L GL + G M E ++
Sbjct: 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRI 458
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 7e-15
Identities = 95/389 (24%), Positives = 169/389 (43%), Gaps = 34/389 (8%)
Query: 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237
+ A RF + +++ +S T+N +++ + +D A ++ ++E ++ YTT+
Sbjct: 423 KEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297
I + D +F EM + V+ N T+ AL+ G AG++ + M + +
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH--YGILIENFCKAEMYDR 355
P D VF L+ +SG ++ A DVL M + P + H G L++ A DR
Sbjct: 539 KP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 356 AIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DP 414
A ++ + E I P+ Y + G A + + KKGV D
Sbjct: 598 AKEVYQMIHEYNIKGTPE--------VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 415 VAFNNLI--RGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472
V F+ L+ GH+ G+ D AFEI++ ++G+ +Y L+ + + K AL
Sbjct: 650 VFFSALVDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK---NWKKAL 704
Query: 473 DSMIEDGHS----PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528
+ + ED S P S +++ +L E ++ A V+ M G+ N + +L A
Sbjct: 705 E-LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
Query: 529 LLMRGHVEEALGRIDLMMQS---GSVPNF 554
+ + L DL+ Q+ G PN
Sbjct: 764 SERKDDADVGL---DLLSQAKEDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-13
Identities = 68/295 (23%), Positives = 138/295 (46%), Gaps = 11/295 (3%)
Query: 75 ARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134
A +L + + G++ D ++ LI + K G V ++F M GVE +V ++ AL
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG--I 192
R G+ A + M S+ ++P R +N ++ S ++ A +MK+ I
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252
D +T ++ ++D A++++ + E NI+ T YT + D AL
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312
I+D+MK VKP+ V ++AL+ AG + + ++L++ ++ I + L+G
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGAC 694
Query: 313 CKSGHLNAAADV---LKAM-IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363
+ + A ++ +K++ +R ++ T LI C+ +A+++L ++
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVST----MNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 62 MIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121
+I+ R G++ A M K V+ D +F LI + G+ G V + FD++ ++
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMK 569
Query: 122 VE-RSVK----SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML-------- 168
E + + AL K G+ AK + + I+ T Y + +
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 169 WGFFLSL---------------------------KLETAIRFFEDMKSRGISLDVVTYNT 201
W F LS+ L+ A +D + +GI L V+Y++
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261
++ + K +A +L+ ++K + PTV + +I + AL + EMK
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 262 VKPNAVTYTALL 273
+ PN +TY+ LL
Sbjct: 750 LCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 159 PTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGY 206
P TYN ++ G+ K+E A++ F +MK RGI +V TY+ +I+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 64 EILG--RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121
E+LG R+G+ H + K G D + LI+ Y G E+ K+F M+
Sbjct: 299 ELLGDERLGREMHGYVV-----KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-- 351
Query: 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAI 181
+ S+ A+ + G A + M + + P T +L L+ +
Sbjct: 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241
+ E + +G+ VV N +I Y++ K +D+A ++F + EK+ VIS+T++I G
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGL 465
Query: 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLP-----GLCDAGKMVEVQKVLREMV--E 294
R +AL F +M +KPN+VT A L G GK + VLR + +
Sbjct: 466 RLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAH-VLRTGIGFD 523
Query: 295 RYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYD 354
++P N+ LL + + G +N A + + + + + IL+ +
Sbjct: 524 GFLP---NA----LLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGS 571
Query: 355 RAIKLLDKLVEKEI 368
A++L +++VE +
Sbjct: 572 MAVELFNRMVESGV 585
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-12
Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 10/219 (4%)
Query: 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204
A+ F+ M E T +N ML G+ L E A+ + +M+ G+S+D T++ MI
Sbjct: 278 ARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 205 GYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264
++R ++ A++ A + +++ T ++ Y R +DA +FD M +
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389
Query: 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV 324
N +++ AL+ G + G+ + ++ M+ + P ++ F+ +L SG ++
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEI 448
Query: 325 LKAMIR-LSIPTEAGHYGILIENFCKAEMYDRAIKLLDK 362
++M I A HY +IE + + D A ++ +
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 8e-12
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 42/211 (19%)
Query: 70 GKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY 129
G + A I DM KKGV+ DE F L++ G G + ++ +I ++ G++ SY
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189
+L M A N W + A+ +ED+KS
Sbjct: 688 SSL----------MGA-----------------CSNAKNW--------KKALELYEDIKS 712
Query: 190 RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249
+ V T N +I ++ +A ++ +EMK + P I+Y+ ++ VA ER DD
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL---VASERKDD 769
Query: 250 A---LRIFDEMKSFDVKPNAVTYTALLPGLC 277
A L + + K +KPN V + GLC
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 77/336 (22%), Positives = 144/336 (42%), Gaps = 57/336 (16%)
Query: 176 KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235
K++ F +M + G+ +V T+ +I+G R ++ +A + M+ KN++P + +
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 236 TMIK--GYV-AVERADDALRIFDEMK--SFDVKPNAVTYTALLPGLCDAGKM---VEVQK 287
+I G AV+RA D L EMK + + P+ +T AL+ +AG++ EV +
Sbjct: 547 ALISACGQSGAVDRAFDVLA---EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 288 VLRE--------------------------------MVERYIPPKDNSVFMKLLGVQCKS 315
++ E M ++ + P D F L+ V +
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHA 662
Query: 316 GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST 375
G L+ A ++L+ + I Y L+ A+ + +A++L + + K I LRP
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI--KSIKLRPT-- 718
Query: 376 LDMEASSYNPMIQHLCHNGQTGKA-EIFFRQLMKKGVLDP--VAFNNLIRGHSKEGNPDS 432
S+ N +I LC Q KA E+ MK+ L P + ++ L+ ++ + D
Sbjct: 719 ----VSTMNALITALCEGNQLPKALEVL--SEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 433 AFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468
+++ G+ + C+ LR+ E A A
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 2e-09
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 190 RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223
+G+ DVVTYNT+I+G R ++DEA +L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 93/452 (20%), Positives = 166/452 (36%), Gaps = 67/452 (14%)
Query: 98 IESYGKKGIVQESVKIFDIMKQLG-VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156
IE G +E++++F+I++ +YDAL + + K + + S G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216
EP ++ N +L L A R F++M R + ++ T+I G EA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAF 209
Query: 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL 276
LF EM E + ++ M++ + A R ++ +K V T + L
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSA----RAGQQLHCCVLKTGVVGDTFVSCAL 265
Query: 277 CD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332
D G + + + V M P K + +L G+ A + M
Sbjct: 266 IDMYSKCGDIEDARCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD-- 318
Query: 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392
G+ I+ F + M I++ +L + L+ ++ +I+
Sbjct: 319 -------SGVSIDQFTFSIM----IRIFSRL----------ALLEHAKQAHAGLIRT--- 354
Query: 393 NGQTGKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADA 451
G LD VA L+ +SK G + A + M R+ + +
Sbjct: 355 -----------------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----S 393
Query: 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMV 511
+ LI Y G A + MI +G +P F +V+ + G + + +SM
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 512 E-KGVKENLDLVAKILEALLMRGHVEEALGRI 542
E +K A ++E L G ++EA I
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 88/401 (21%), Positives = 149/401 (37%), Gaps = 70/401 (17%)
Query: 180 AIRFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMI 238
A+ FE +++ +L TY+ ++ K + + ++ ++ EP ++
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 239 KGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIP 298
+V DA R+FDEM + N ++ ++ GL DAG E + REM E
Sbjct: 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE---- 217
Query: 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFC--KAEMYDRA 356
D S +A M+R S + G + + C K +
Sbjct: 218 --DGS---------------DAEPRTFVVMLRASAGLGSARAGQQL-HCCVLKTGVVG-- 257
Query: 357 IKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416
D V +I DM Y+ C G A F + +K VA
Sbjct: 258 ----DTFVSCALI-------DM----YSK-----C--GDIEDARCVFDGMPEKTT---VA 292
Query: 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476
+N+++ G++ G + A + M GV D + +I + R AK A +I
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 477 EDGHSPASSLFRSVMESLFED-GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535
G P + + + L+ GR++ A V M K + L+A G
Sbjct: 353 RTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA----GYGNHGRG 407
Query: 536 EEALGRIDLMMQSGSVPNFDSLLSVLS--------EKGKTI 568
+A+ + M+ G PN + L+VLS E+G I
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 47/241 (19%)
Query: 70 GKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY 129
G+L A +L M + V DED + L K V+E ++ V+
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH--TYNVMLWGFFLSLKLETAIRFFEDM 187
+A+ + +R G + A F KM P R ++NV++ G+ + + A+ + M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKM------PERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178
Query: 188 KSRGISLDVVTY-----------------------------------NTMINGYNRFKKM 212
G+ DV T+ N +I Y + +
Sbjct: 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238
Query: 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
A +F M ++ IS+ MI GY + L +F M+ V P+ +T T++
Sbjct: 239 VSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 273 L 273
+
Sbjct: 295 I 295
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 69/286 (24%), Positives = 119/286 (41%), Gaps = 37/286 (12%)
Query: 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD 248
S SL V N M++ + RF ++ A +F +M E++ + S+ ++ GY D
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAKAGYFD 169
Query: 249 DALRIFDEMKSFDVKPNAVTYTALL---PGLCDAGKMVEVQKVLREMVERYIPPKDNSVF 305
+AL ++ M V+P+ T+ +L G+ D + EV V R+ D V
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA----HVVRFGFELDVDVV 225
Query: 306 MKLLGVQCKSGHLNAAADVL-----------KAMIRLSIPTEAGHYGI-----LIENFCK 349
L+ + K G + +A V AMI G+ + E
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 350 AEMYD-----RAIKLL-DKLVEKEI-ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIF 402
++ A +LL D+ + +E+ ++ ++ S N +IQ G G+AE
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD 448
F ++ K D V++ +I G+ K G PD A E +M + V D
Sbjct: 346 FSRMETK---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 8e-08
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 197 VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV 231
VTYNT+I+G + +++EA +LF EMKE+ IEP V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 1e-07
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 197 VTYNTMINGYNRFKKMDEAEKLFAEMKEKNI 227
VTYN++I+GY + K++EA +LF EMKEK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171
V +Y+ L ++G+ A + FN+M GI+P +TY++++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 20/256 (7%)
Query: 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156
LIE Y K + +++++F + E+ V S+ ++ + R A +F +ML
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216
++P T L L + GI D N +++ Y R +M+ A
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544
Query: 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL 276
F EK+ V+S+ ++ GYVA + A+ +F+ M V P+ VT+ +LL
Sbjct: 545 NQF-NSHEKD----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 277 CDAGKMVEVQKVLREMVERY-IPP--KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI 333
+G + + + M E+Y I P K + + LLG ++G L A + + M I
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG---RAGKLTEAYNFINKM---PI 653
Query: 334 PTEAGHYGILIENFCK 349
+ +G L+ N C+
Sbjct: 654 TPDPAVWGALL-NACR 668
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459
D V +N LI G+ K+G + A ++ M +RG+ + Y LI+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 59/265 (22%), Positives = 99/265 (37%), Gaps = 47/265 (17%)
Query: 316 GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST 375
L AA + + R + +LI ++ ++ +D+A+ KL +K+
Sbjct: 418 ADLETAAQLDPELGRADL--------LLILSYLRSGQFDKALAAAKKLEKKQ-------- 461
Query: 376 LDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA-- 433
AS +N + G KA F + + A NL R +EGNPD A
Sbjct: 462 -PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520
Query: 434 -FE-IVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491
FE ++ I P++ A + L YLR G +A L+ E + ++
Sbjct: 521 RFEKVLTID-----PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-NPQEIEPALALA 574
Query: 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG-- 549
+ G+++ A ++ D EA LM LGR L
Sbjct: 575 QYYLGKGQLKKALAILNEAA--------DAAPDSPEAWLM-------LGRAQLAAGDLNK 619
Query: 550 SVPNFDSLLSVLSEKGKTIAAVKLL 574
+V +F LL++ + A+ LL
Sbjct: 620 AVSSFKKLLALQPDSA---LALLLL 641
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 264 PNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPP 299
P+ VTY L+ G C GK+ E K+ EM +R I P
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 18/233 (7%)
Query: 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK 127
R+G L + I + + G+ +D + L++ Y + G + + F+ E+ V
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555
Query: 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187
S++ L + G+ MA FN+M+ G+ P T+ +L S + + +F M
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 188 KSR-GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG---YVA 243
+ + I+ ++ Y +++ R K+ EA +M I P + ++ +
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRH 672
Query: 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGL-CDAGKMVEVQKVLREMVER 295
VE + A + F++ PN+V Y LL L DAGK EV +V + M E
Sbjct: 673 VELGELAAQHI-----FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 225 KNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258
K ++P V++Y T+I G R D+A+ + DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMV 293
+KP+ VTY L+ GLC AG++ E ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266
++Y T+I G R ++AL +F EMK ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL-DPVAFNNLIRGHSK 426
+YN +I C G+ +A F ++ K+G+ + ++ LI G K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDV 262
++Y ++I GY + ++AL +F EMK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 9e-04
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 196 VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP 229
+ TYN ++ + D A + EMK ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445
V +N+LI G+ K G + A E+ K M +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (91), Expect = 0.003
Identities = 49/271 (18%), Positives = 95/271 (35%), Gaps = 9/271 (3%)
Query: 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVK-PNAV 267
K + A + E K + + + + +AL + +E A
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327
L L G++ E ++L + +E + P + L + G A ++L+
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387
+ L + + + + Y+ A++L +K +E L+ A + +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL------DPELNELAEALLALG 174
Query: 388 QHLCHNGQTGKAEIFFRQLMK-KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP 446
L G+ +A + +K D A NL + K G + A E + P
Sbjct: 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DP 233
Query: 447 RDADAYICLIESYLRKGEPADAKTALDSMIE 477
+A+A L L G +A AL+ +E
Sbjct: 234 DNAEALYNLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 662 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.53 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.49 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.47 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.27 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.25 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.21 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.2 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.83 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.72 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.72 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.32 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.26 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.99 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.96 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.92 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.87 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.83 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.81 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.79 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.76 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.75 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.72 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.66 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.65 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.64 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.57 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.52 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.44 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.41 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.41 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.4 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.4 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.38 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.24 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.19 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.07 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.04 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.84 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.79 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.78 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.67 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.53 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.53 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.52 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.51 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.49 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.4 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.39 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.37 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.35 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.3 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.27 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.18 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.18 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.13 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.08 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.94 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.77 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.75 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.75 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.72 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.4 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.36 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.12 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.99 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.62 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.43 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.19 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.96 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.87 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.77 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.73 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.29 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.25 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.25 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.12 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.12 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.79 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.59 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.34 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.09 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.98 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.81 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.72 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.65 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.61 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.4 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.4 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.27 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.91 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.89 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.5 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.2 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.0 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.34 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.21 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 89.15 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.98 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.35 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.85 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.77 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.69 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.56 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.52 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.43 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.17 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.94 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.78 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.63 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.44 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.36 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.2 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.06 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.28 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 85.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.92 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.78 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.67 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.54 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 84.46 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.3 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.18 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.13 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.96 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.88 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.76 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.59 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.53 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.27 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.78 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.7 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 82.42 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.89 | |
| PF13934 | 226 | ELYS: Nuclear pore complex assembly | 81.85 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.81 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 81.42 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.97 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.58 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 80.44 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.04 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-73 Score=609.68 Aligned_cols=607 Identities=18% Similarity=0.209 Sum_probs=539.4
Q ss_pred cCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHH
Q 006071 17 LVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (662)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (662)
.++..+.+.++..+.+.|++++|+.+|+.+.+.+ ++|+..+|..++..|.+.+....+.+++..+.+.+..++..+++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 4455567889999999999999999999998877 789999999999999999999999999999999888889999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006071 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 97 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 176 (662)
++..|++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999974 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (662)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (662)
++.+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|+++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 36889999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 006071 257 MKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE 336 (662)
Q Consensus 257 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (662)
|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.| |..+++.++.+|++.|+++.|.++|++|. .||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999988 99999999999999999999999999985 478
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHH
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPV 415 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 415 (662)
..+|+.++.+|++.|++++|+++|++| ...++.||..+|+.++.+|++.|+.+.|.++++.+.+.+ .++..
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M--------~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALM--------EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHH--------HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 889999999999999999999999999 445677899999999999999999999999999999988 78888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (662)
+++.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 999999999999999999999988865 4777888888888888888888888888876 57788887777776666
Q ss_pred hcCCHHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKGV------------------------------KENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
+.|+.+.+.+++..+.+.|+ .+|..+|+.++.+|.+.|+.++|+++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555444333 567888999999999999999999999999
Q ss_pred HhCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHh-cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 006071 546 MQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCL-GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (662)
Q Consensus 546 ~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (662)
.+.|+.|+ +..++.+|.+.|++++|.++|+.+. +.+..|+..+|..++++|.+.|++++|.+++++|. ..|+.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 99999999 4557888899999999999999988 56788899999999999999999999999999984 45678
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHhhhhccc
Q 006071 622 KSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (662)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (662)
..|..|+.+|..+|+.+.|+.+.+.+.+..+.
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 88888999999999999988777776655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=597.34 Aligned_cols=594 Identities=18% Similarity=0.238 Sum_probs=549.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
.+.++..+.+.|+++.|.++|+.|. +++..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|+
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 4667777888899999999998884 46788999999999999999999999999988899999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..+++..+.+++..+.+.|+.|++.+++.++.+|++.|+++.|..+|++|. .||..+|+.+|.+|++.|++++|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999984 5788999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (662)
+|++|...|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.| |..++..++.+|++.|+++.|.++++.+.+.|+.++..+++.
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5788999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
++.+|++.|++++|.++|++| .. +|..+|+.++.+|++.|+.++|..+|++|.....||..+|+.++.
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m--------~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNI--------PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhC--------CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 999999999999999999998 33 578899999999999999999999999998766999999999999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (662)
+|++.|+++.+.+++..+.+.|+.++..+++.++.+|++.|++++|..+|+.+ .||..+|+.++.+|.+.|+.++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999987 5899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHh
Q 006071 503 ASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM-QSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCL 578 (662)
Q Consensus 503 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~ 578 (662)
|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|. ..++.|+ +..++++|++.|++++|.++++++
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 99999999999999999999999999999999999999999999 5899998 456899999999999999999976
Q ss_pred cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhc
Q 006071 579 GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (662)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (662)
...|+...|..++.+|...|+.+.+....+++.+.. +.+...|..|...|...|+|++|..+.+.++..+
T Consensus 652 --~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 652 --PITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred --CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 257889999999999999999999988888887653 3466677778899999999999988877776543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=554.85 Aligned_cols=520 Identities=17% Similarity=0.295 Sum_probs=490.0
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
...+..++..+.+.|++++|+++|++|.+.+.++++...+..++..|.+.|..++|..+++.|.. |+..+|+.++.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 34467778888899999999999999999886678888899999999999999999999999975 79999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006071 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 179 (662)
+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE--KNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (662)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (662)
|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 678999999999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 006071 258 KSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEA 337 (662)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (662)
.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHH
Q 006071 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVA 416 (662)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 416 (662)
.+|+.++.+|++.|++++|.++|++| ...+..||..+|+.++.+|++.|++++|.++|+.|...+ .||..+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM--------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDI--------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH--------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999 445678999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----c-------------------CChHHHHHHHH
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----K-------------------GEPADAKTALD 473 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~ 473 (662)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++..|.+ + +..+.|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999876442 1 22467999999
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
+|++.|+.||..||+.++..+...+....+..+++.+...+..|+..+|+.++.++.+. .++|+.++++|...|+.|+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999988888899999999999888778888999999999988432 4689999999999999998
Q ss_pred H
Q 006071 554 F 554 (662)
Q Consensus 554 ~ 554 (662)
+
T Consensus 915 ~ 915 (1060)
T PLN03218 915 V 915 (1060)
T ss_pred c
Confidence 5
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=538.88 Aligned_cols=542 Identities=17% Similarity=0.253 Sum_probs=353.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGV-QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
++...|..++..|++.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4455566666666666666666666666666653 34555556666666666666666666666653 666666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS--FDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 290 (662)
++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666654 4566666666666666666666666666666
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhc
Q 006071 291 EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (662)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (662)
.|.+.++.| +..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|
T Consensus 604 ~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM------- 675 (1060)
T PLN03218 604 MIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA------- 675 (1060)
T ss_pred HHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------
Confidence 666666666 666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 006071 371 RPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (662)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (662)
...+..|+..+|+.++.+|++.|++++|.++|+.|...+ .|+..+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 676 -~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 676 -RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred -HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 334456666666666666666666666666666666655 566666666666666666666666666666666666666
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
.+|+.++.+|++.|++++|..++++|.+.|+.||..+++.++..|. +.++++..+.+.+...+. ....
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~ 822 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQ 822 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccc
Confidence 6666666666666666666666666666666666666666665443 134444433333222110 0001
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAY 606 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 606 (662)
...+..++|+.+|++|.+.|+.|+.. .++..++..+..+.+..+++.....+..++...|+.+++++.+. .++|+
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 11123467888888888888888844 34555556777788888887666666666777888888877322 36788
Q ss_pred HHHHHHHHcCCCCcHh
Q 006071 607 SILFKIMEKGGVTDWK 622 (662)
Q Consensus 607 ~~~~~~~~~~~~~~~~ 622 (662)
.+++.|...|..|++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 8888888888777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=498.60 Aligned_cols=474 Identities=17% Similarity=0.253 Sum_probs=448.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
.+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||+.+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345589999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|..+|++|.+.|+.|+..+|+.++.+|+..|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999994 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 292 (662)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 568999999999999999999999999999
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccC
Q 006071 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372 (662)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 372 (662)
.+.|+.| |..+|+.++.+|++.|+++.|.+++..+.+.|++|+..+++.++.+|++.|++++|.++|++| .
T Consensus 317 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m--------~ 387 (697)
T PLN03081 317 RDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM--------P 387 (697)
T ss_pred HHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC--------C
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred CCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-CCCCCCHH
Q 006071 373 QSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-RGVPRDAD 450 (662)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ 450 (662)
. ||..+|+.++.+|++.|+.++|.++|++|.+.+ .||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 2 688999999999999999999999999999999 99999999999999999999999999999986 69999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.++. +..+|..++..|.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~ 539 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYN 539 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHH
Confidence 9999999999999999999999876 78899999999999999999999999999999765543 5678999999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCC
Q 006071 531 MRGHVEEALGRIDLMMQSGSVP 552 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p 552 (662)
+.|++++|.++++.|.+.|+..
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999988753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=497.47 Aligned_cols=587 Identities=14% Similarity=0.214 Sum_probs=494.8
Q ss_pred CChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 006071 21 FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES 100 (662)
Q Consensus 21 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (662)
..+..++..+.+.|++++|+++|+++...+++.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.++..
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 36778888899999999999999999887667899999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 180 (662)
|.+.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|..+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999974 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|...
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999964 59999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
|+.||..||+.++.+|++.|++++|.+++..|.+.|+.| |..+++.++.+|++.|+++.|.++|++|. .+|..+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 999999999999999999999999999999999999988 99999999999999999999999999986 4789999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCCHHHHH
Q 006071 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK-G-VLDPVAFN 418 (662)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~ 418 (662)
+.+|.+|++.|+.++|+++|++|. ..++.||..||+.++.+|++.|.+++|.++|+.|.+. + .|+..+|+
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~--------~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMI--------AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 999999999999999999999994 4567899999999999999999999999999999874 5 89999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhc
Q 006071 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFED 497 (662)
Q Consensus 419 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 497 (662)
+++.+|++.|++++|.++++.| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..++..|.+.
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhC
Confidence 9999999999999999998876 4679999999999999999999999999999974 4564 67899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHH----hCCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 006071 498 GRVQTASRVMKSMVEKGVKENLD-LVAKIL---EALL----MRGH----VEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~~----~~g~----~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (662)
|++++|.++++.|.+.|+...+. +|..+. ..+. .+.+ ++...++..+|.+.|+.|+...+..-... .
T Consensus 542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~-~ 620 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE-D 620 (697)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH-H
Confidence 99999999999999998754322 221110 0000 0111 24445677788889999986544321111 0
Q ss_pred CHHHHHHHHH--HHhcCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcCC
Q 006071 566 KTIAAVKLLD--FCLGRD---CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEGN 636 (662)
Q Consensus 566 ~~~~A~~~~~--~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 636 (662)
..++.+.... .++.-+ .++... ..+...+.-.|+-..|.+++.++...... .|..-+-|.-.+-+.+|+
T Consensus 621 ~~~~~~~~hsekla~a~~l~~~~~~~~--i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 695 (697)
T PLN03081 621 EEKVSGRYHSEKLAIAFGLINTSEWTP--LQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGD 695 (697)
T ss_pred HHHHHHHhccHHHHHHhhCccCCCCCe--EEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccc
Confidence 1111111110 011111 011111 01233444568888888888887765422 233334444444444443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=351.94 Aligned_cols=593 Identities=15% Similarity=0.121 Sum_probs=486.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+..++...|++++|...|+.+.+.. |.+...+..+..++...|++++|...++.+....+ .+...+..+...+.+.|
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCC
Confidence 3345567778888888888777765 56677777777888888888888888888776543 36677788888888888
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.++. .......++..+.+.|++++|..+++
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888888887654 345667777778888888888888888888765432 33445556677888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
.+... .+.+..++..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+.+...+ +.+
T Consensus 456 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 532 (899)
T TIGR02917 456 KLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN 532 (899)
T ss_pred HHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence 88765 34477788888899999999999999999988753 4456677888888999999999999999988764 556
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 266 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
..++..+...+...|+.++|..+++++... .|.+...+..++..+...|+++.|..+++.+.+.. +.+...|..+..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 778888888899999999999999998775 45577888889999999999999999999988754 667788999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.|...|++++|+..|+.+.+.. + .+...+..+..++...|++++|...++++.+..+.+..++..++..+.
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQ----P-----DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----C-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999986543 1 244567888888999999999999999999988888999999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (662)
..|++++|..+++.+...+ +.+...+..+...+...|++++|...++.+...+ |+..++..+...+...|++++|.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998875 4477888889999999999999999999998754 555777888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.++.+.+..+. +...+..++..|...|++++|++.|+++.+. .|+ ...++..+...|+ .+|+.+++++++..
T Consensus 758 ~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 758 TLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 99999987655 7888888999999999999999999999873 344 3456777888888 88999999999876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
+. ++..+..++.++...|++++|.++++++++..+. +...+..++.++.+.|++++|..+.+.+
T Consensus 834 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 834 PN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 4556678999999999999999999999997654 7788889999999999999997766654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.38 Aligned_cols=592 Identities=16% Similarity=0.085 Sum_probs=418.9
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 110 (662)
...|++++|+..|+.+.+.+ |.....+..+..++...|++++|...++.+.+..+ .+...+..+...+...|++++|
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHH
Confidence 34556666666666655544 33344444455555666666666666666655432 2455556666666666777777
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 111 VKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
...++.+.... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 77766666543 3455566666667777777777777777766543 224455556666666677777777777766655
Q ss_pred CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006071 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (662)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (662)
... .......++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 322 3344455666677777777777777777654 34566677777777888888888888887776643 34555666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (662)
.+...+...|++++|...++++... .|.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC
Confidence 7777777788888888888877765 45567777777788888888888888888776654 45566677777888888
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (662)
|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+..+.++..+..+..++...|++
T Consensus 581 ~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 581 GQLKKALAILNEAADAA---------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred CCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 88888888888775432 234567788888888888888888888888887777888888888888888888
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
++|..+++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888887754 3367788888888888888888888888887654 345666777778888888899998888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCh
Q 006071 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL 586 (662)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 586 (662)
...++.+ ..+..++.++...|++++|.+.++++.+. .|+ ...++..+...|++++|..+++++++..+ .++
T Consensus 730 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 804 (899)
T TIGR02917 730 LKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNA 804 (899)
T ss_pred HhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCH
Confidence 8775543 56667888888888999998888888762 333 23456677788999999999998888763 456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhc
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (662)
..+..+++.+...|+ .+|+++++++..... .+...+..+..++...|++++|....+.+.+..
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777788888888888 779999998887643 344556678888899999999965555444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-29 Score=281.10 Aligned_cols=431 Identities=13% Similarity=0.080 Sum_probs=327.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHH------------
Q 006071 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP-NAVTY------------ 269 (662)
Q Consensus 203 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------ 269 (662)
...+...|++++|+..|++..... +.+...+..+..++.+.|++++|+..|++..+..-.. ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455677899999999999998763 4477889999999999999999999999988753111 11111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 006071 270 TALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK 349 (662)
Q Consensus 270 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 349 (662)
......+...|++++|...|+++++. .|.+...+..+..++...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 12244667899999999999999986 67788889999999999999999999999998864 455666666777764
Q ss_pred CCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 006071 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (662)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (662)
.++.++|+.+++.+...................+..+...+...|++++|...|+++.+..|.++.++..+...|...|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 46789999888765322100000000001122355567778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH---------hHHHHHHHHHhcCCH
Q 006071 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS---------LFRSVMESLFEDGRV 500 (662)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~ 500 (662)
+++|...++.+.+.. +.+...+..+...+...+++++|+..++.+......++.. .+......+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998754 3356666666667788999999999998764322222211 123445678889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHH
Q 006071 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~ 576 (662)
++|..+++ ..+ .+...+..+...+.+.|++++|++.++++++ ..|+ ...++.++...|++++|++.+++
T Consensus 590 ~eA~~~l~----~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLR----QQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHH----hCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999887 222 3556677799999999999999999999998 4455 23467778889999999999998
Q ss_pred HhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----cHhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 577 CLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-----DWKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
+++..+ .+...+..++.++...|++++|.+.+++++...... ....+..+...+...|++++|....+..
T Consensus 663 ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 663 LPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887643 344556678999999999999999999998754321 2245566788899999999996665544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-28 Score=269.46 Aligned_cols=599 Identities=12% Similarity=0.067 Sum_probs=438.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHH------------
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMF------------ 94 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 94 (662)
.+.....++.+.|.+.++++.... |.++.++..++.++.+.|+.++|.+.++++.+..+. +....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence 336668899999999999999887 889999999999999999999999999999887644 33322
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHh-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 95 ----EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKS-YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 95 ----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
..+...+...|++++|.+.|+.+.+.+ +++... ...........|++++|+..++++.+.. +.+...+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 333456888999999999999998754 344321 1111222234599999999999998874 336667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HH-----------------HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLD--VV-----------------TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT 230 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~-----------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 230 (662)
.+...|+.++|+..++++........ .. .+...+..+-.....+.|...+.........|.
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 89999999999999999876421100 01 111112222222234455556655543322232
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHH-----
Q 006071 231 VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF----- 305 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----- 305 (662)
.. .......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..........+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 22 1234567788999999999999998763 4477889999999999999999999999998853221111111
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006071 306 -------MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (662)
Q Consensus 306 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (662)
......+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++++.. + .
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p-----~ 417 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----P-----G 417 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----C-----C
Confidence 223456778999999999999999874 5567778888999999999999999999997653 2 1
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV---------LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (662)
+...+..+...+. .++.++|..+++.+....+ .....+..+...+...|++++|.+.+++..+..+. +.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 2345556666664 4678999988876543321 11234556778888999999999999999986533 67
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------H
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL---------D 520 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~ 520 (662)
..+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......++. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 788889999999999999999999998643 223444444555667889999999999886543222222 1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhc
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (662)
.+......+...|++++|+++++ ..+..|. ...+...+.+.|++++|+..++++++..|. +...+..++.+|...
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 22345678899999999999987 2233333 345777888999999999999999998654 456667899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 600 GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
|++++|++.+++++.... .+...+..+..++...|++++|..+.+.+...
T Consensus 651 g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 651 GDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999999886532 34555667888999999999997777776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-25 Score=230.72 Aligned_cols=581 Identities=14% Similarity=0.084 Sum_probs=384.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
..|++++|+..|+.+++.. |.++.++..++++|...|++++|+..+++..+.++. |...+..+ ..+ +++.+|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHH-HHh---ccChhHH
Confidence 4599999999999999998 788999999999999999999999999999987542 44444444 222 8999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHH--------HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHhcCCHHHHHH
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKL--------ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKLETAIR 182 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~ 182 (662)
.+++++.... +-+...+..+... |.+. ++|.+.++ .....+.|+..+.... ...|...+++++|+.
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999865 3445566555555 5555 44554444 3333344455555555 889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNR-FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
++.++.+.++. +..-...|..+|.. .++ +.+..+++.. ++.+...+..++..|.+.|+.++|.++++++...-
T Consensus 204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99999998644 56667777778887 466 7888876542 33588899999999999999999999999986432
Q ss_pred C-CCCHHHHHHH------------------------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 006071 262 V-KPNAVTYTAL------------------------------LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLG 310 (662)
Q Consensus 262 ~-~~~~~~~~~l------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (662)
. .|...+|... +..+.+.++++.++++.. ..|.++. ...-..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~r~~ 350 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-LEERYA 350 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH-HHHHHh
Confidence 1 1333333222 333445555554443311 2443332 111111
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHH
Q 006071 311 VQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHL 390 (662)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (662)
.....+...++...+..+.+.. +.+......+.-...+.|+.++|..+|+...... .+ ..++.....-++..|
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ----GD--ARLSQTLMARLASLL 423 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC----cc--cccCHHHHHHHHHHH
Confidence 2223355566666666665542 4455555556666677888888888888775421 11 112222333455555
Q ss_pred HhcCC---hhHH-------------------------HHHHHHHHhcCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 391 CHNGQ---TGKA-------------------------EIFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (662)
Q Consensus 391 ~~~~~---~~~a-------------------------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 440 (662)
...+. ..++ ...+..+....++ ++..+..+..++.. +++++|...+...
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 54443 1122 2222233333345 67777777777766 7777888877776
Q ss_pred hhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006071 441 GRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLD 520 (662)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 520 (662)
.... |+......+...+...|++++|...++++... +|+...+..+..++...|++++|...++.+++.++. +..
T Consensus 503 l~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~ 577 (987)
T PRK09782 503 EQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNA 577 (987)
T ss_pred HHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHH
Confidence 6643 45444444455556788888888888887643 344445556666777888888888888888776543 333
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL 597 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 597 (662)
.+..+...+...|++++|+..+++.++ ..|+ ...++.++.+.|+.++|+..+++++...|. +...+..++.++.
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~ 654 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 333444455566888888888888876 3344 234556677788888888888888887633 4455667888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhcccc
Q 006071 598 AAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (662)
..|++++|++.+++.+...+ .+...+..+..++...|++++|+...+.........
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 88888888888888877643 356667778888888888888876666655555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-24 Score=211.88 Aligned_cols=580 Identities=14% Similarity=0.104 Sum_probs=443.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 113 (662)
.+.+.|.+.|..+++.+ |++...+..-+.+....|++..|..+|+.+....+..-+.....+..++.+.|+.+.|+..
T Consensus 144 ~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 144 KSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred ccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHH
Confidence 34799999999999998 8888888777788888999999999999966654433333444455677899999999999
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 114 FDIMKQLGVERSVKSYDALFKLILRRGR---YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 114 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
|.+..+.+ |.++.++..|...-....+ +..+..++....... .-++...+.|...|.-.|+++.+..+...+...
T Consensus 222 ~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99999865 2344455444444333333 556667766665543 347788889999999999999999999998875
Q ss_pred CCC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 006071 191 GIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266 (662)
Q Consensus 191 ~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (662)
... .-...|-.+..+|-..|++++|...|.+..+.. ++ +..+.-+...|++.|+.+.+...|+.+.... +.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 321 124568889999999999999999998887753 33 3455678899999999999999999998762 4556
Q ss_pred HHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCChh
Q 006071 267 VTYTALLPGLCDAG----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI----RLSIPTEAG 338 (662)
Q Consensus 267 ~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 338 (662)
.+...+...|...+ ..+.|..++.+.... .|.|...|..+...+....-+.. +.+|..+. ..+.++.+.
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHH
Confidence 67777777777664 567788888888775 57789999998888876554443 66665543 345567888
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHhhh-hccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHH
Q 006071 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEI-ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAF 417 (662)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (662)
..|.+...+...|++..|...|......-. ...++.+-.++..+--.+..+.-..++.+.|.+.|..+.+..|.-...|
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 999999999999999999999999876621 1112222122322233455566677899999999999999988888888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHHh
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-HSPASSLFRSVMESLFE 496 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 496 (662)
..++.+....++..+|...++.....+ ..++..+..+...+.....+..|..-|....+.. ..+|..+...|...|..
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 888766666788999999999988753 3477788888889999999999988777766442 22566666666665532
Q ss_pred ------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHh
Q 006071 497 ------------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG--SVPNFDSLLSVLS 562 (662)
Q Consensus 497 ------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~ 562 (662)
.+..++|+++|.++++.++. |...-+.++-++...|++.+|..+|.++.+.. ..+.+..++++|.
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 45678899999999988766 77777889999999999999999999999844 3445778999999
Q ss_pred ccCCHHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHH
Q 006071 563 EKGKTIAAVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSD 625 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 625 (662)
..|++-.|+++|+.+++.- ...+..+.+.|++++++.|++.+|.+.+.............-++
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999999999999999864 34557888889999999999999999999988776554444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-23 Score=215.53 Aligned_cols=594 Identities=10% Similarity=0.019 Sum_probs=412.6
Q ss_pred HHHHhhcCCCC-ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC
Q 006071 11 QNKIRALVPQF-DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW 89 (662)
Q Consensus 11 ~~~~~~~~~~~-~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 89 (662)
+..++.-|.+. ....+..++...|++++|+..++.+.+.+ |.+...+..+..+ +++.+|..+++++.+..+.
T Consensus 68 ~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~- 140 (987)
T PRK09782 68 EYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQKA- 140 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-
Confidence 34444334332 22556668889999999999999999987 5666666655333 8999999999999988655
Q ss_pred CHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH-HHHHHHcCChhHHHHHHHHHHhCCCCcC
Q 006071 90 DEDMFEVLIES--------YGKKGIVQESVKIFDIMKQLGVERSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEGIEPT 160 (662)
Q Consensus 90 ~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 160 (662)
+..++..+... |.+. +.|.+.++ .......|+..+.... ...|.+.|++++|+.++.++.+.++. +
T Consensus 141 n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~ 215 (987)
T PRK09782 141 CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-S 215 (987)
T ss_pred ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-C
Confidence 66677666665 6655 55555554 3333333345544444 89999999999999999999998643 4
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC-CCHhhHHH--
Q 006071 161 RHTYNVMLWGFFL-SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYTT-- 236 (662)
Q Consensus 161 ~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~-- 236 (662)
......+..+|.. .++ +.+..++.. .+..+...+..+...|.+.|+.++|.++++++...-.. |...+|.-
T Consensus 216 ~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 216 AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 5556666667777 366 777777553 23358899999999999999999999999998754211 33333321
Q ss_pred ----------------------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 237 ----------------------------MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (662)
Q Consensus 237 ----------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 288 (662)
++..+.+.++++.+.++.. +.|.......-..+....+...++...
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHH
Confidence 2444555566664444321 234333321112222344777778888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHcCCc---HHHHHHH----
Q 006071 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-S-IPTEAGHYGILIENFCKAEM---YDRAIKL---- 359 (662)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~---- 359 (662)
+..+.+. .|.+......+.-...+.|+.++|..+|...... + ...+......++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 365 ARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 8888775 4667888888888889999999999999998762 1 22344455577888877766 3344333
Q ss_pred --------HHHHHHhhh---hc-cCCCCCCC--ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 360 --------LDKLVEKEI---IL-RPQSTLDM--EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 360 --------~~~~~~~~~---~~-~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.....+... .. +.-...++ +...|..+..++.. ++.++|...+.......|.+ .....+...+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~-~~~L~lA~al~ 520 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA-WQHRAVAYQAY 520 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch-HHHHHHHHHHH
Confidence 111100000 00 00011122 45566777777666 88889999888888776543 33444555667
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTAS 504 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~ 504 (662)
..|++++|...++.+... +|+...+..+..++.+.|++++|...+++.++.. |+. ..+..+...+...|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 899999999999998664 3455567777888999999999999999998754 433 33333444555679999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
..+++.++..+ +...+..+..++.+.|++++|+..+++.+. ..|+ ...+..++...|+.++|+..++++++.
T Consensus 597 ~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998765 577888999999999999999999999998 5566 345677888999999999999999998
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhH
Q 006071 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQAD 641 (662)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 641 (662)
.| .++..+..++.++...|++++|+..+++.++.... ................++..|.
T Consensus 673 ~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 673 LP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHH
Confidence 64 44666778999999999999999999999987543 2233334455566666666663
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-23 Score=193.35 Aligned_cols=432 Identities=16% Similarity=0.151 Sum_probs=217.3
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (662)
+...+..-+.+.|++++|++....+-+.+ +.+......+..++.+..+.+.....-....+...+ -..+|..+...+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHH
Confidence 33444445555566666666665555444 344444444445555555555544433333333222 345555566666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH-HHHHhcCCHHHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML-WGFFLSLKLETA 180 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a 180 (662)
-..|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.....+-+ ..+-..|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 66666666666666665533 234455555666666666666666655555542 23332222211 122234555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
..-|.+..+... -=...|..|...+-..|+...|++.|++..+. .|+ ...|..|...|...+.+++|+..|.+...
T Consensus 204 ~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 204 KACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 555555554411 12334555555555556666666555555543 232 23555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 006071 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH 339 (662)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (662)
.. +.....+..+...|...|.++.|+..|++.++. .|.-+.+|+.+..++-..|+..+|...|.+..... +.-...
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 31 122334444555555555555555555555553 44445555555555555555555555555555442 233444
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNN 419 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (662)
.+.|...|...|.+++|..+|...++.. +. -...++.+...|-+.|++++|+..++..++..|.-..+++.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~----p~-----~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF----PE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC----hh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 5555555555555555555555554322 10 11234445555555555555555555555555555555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
+...|-..|+.+.|.+.+.+....++. -...++.|...|-..|+..+|+.-+++.+
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 555555555555555555555543211 22444555555555555555555555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-23 Score=190.24 Aligned_cols=435 Identities=15% Similarity=0.122 Sum_probs=340.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 173 (662)
...+..-..+.|++.+|++.....-..+ +.+......+-..+.+..+.+.....-...++. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 3444555567788888888777665543 223333333445555666666655443333333 23356678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHH
Q 006071 174 SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISY-TTMIKGYVAVERADDALR 252 (662)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~ 252 (662)
.|++++|+.+++.+.+.... .+..|..+..++...|+.+.|.+.|.+..+. .|+.... ..+...+...|+..+|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 89999999999988887433 6788888888999999999999888888775 4555433 334445556788888888
Q ss_pred HHHHHhhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006071 253 IFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (662)
Q Consensus 253 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (662)
.|.+..+. .|. ...|+.+...+...|+...|++.|++.+. ++|.-..+|..|...|...+.++.|...|.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88887764 333 45788888888889999999999999887 47777888999999999999999999999888775
Q ss_pred CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006071 332 SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 332 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (662)
. +.....+..+...|...|..+.|+..|++.++.. |. -...|+.+..++...|++.+|...+.+.....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~----P~-----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ----PN-----FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC----CC-----chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 3 4456677778888889999999999999987643 11 235789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSV 490 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 490 (662)
..+.+.+.|...+...|.++.|..+|......... -...++.|...|-+.|++++|+..+++.++ ++|+ ...++.+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 99999999999999999999999999998875321 346788999999999999999999999984 6676 4678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
...|...|+.+.|+..+.+++..++. =.+..+.|...|...|++.+|++-+++.++ ++||
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 89999999999999999999887665 355678899999999999999999999987 6666
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-21 Score=186.46 Aligned_cols=575 Identities=11% Similarity=0.071 Sum_probs=418.4
Q ss_pred hHHHHH--HHhcCCCHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 23 HNLVYN--VLHGAKNSEHALQFFRWVERAGL-FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 23 ~~~l~~--~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
..++.+ +....++|..|+.+|+.++...+ .+++ ....+..++.+.|+.+.|+..|++..+.++. +..++..|..
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~ 241 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGE 241 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHH
Confidence 344444 56678999999999999887662 2333 3344557788999999999999999986542 3444433333
Q ss_pred HHHhc---CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhc
Q 006071 100 SYGKK---GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE--PTRHTYNVMLWGFFLS 174 (662)
Q Consensus 100 ~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~ 174 (662)
.-... ..+..+..++...-... +.++...+.|.+.|.-.|+++.+..+...+...... .-...|-.+.++|...
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 22222 34566777777665543 467888999999999999999999999988765311 1234577788999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHHHH
Q 006071 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE----RADDA 250 (662)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a 250 (662)
|++++|..+|.+..+....--+..+..+...+.+.|+++.+...|+.+... .+.+..+...|...|...+ ..+.|
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 999999999998887633222445567889999999999999999999876 3556678888888887775 45677
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 006071 251 LRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMV----ERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLK 326 (662)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 326 (662)
..++......- +.|...|..+...+... +....+.+|..+. ..+..+ .+...+.+...+...|+++.|...|.
T Consensus 400 ~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 400 SNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 77777776653 55777888887776554 4444477766654 233333 78899999999999999999999999
Q ss_pred HHHhC---CCCCCh------hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCCh
Q 006071 327 AMIRL---SIPTEA------GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQT 396 (662)
Q Consensus 327 ~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 396 (662)
..... ...++. .+-..+...+-..++.+.|.+.|..++... |+- ..|..++......+..
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh----------p~YId~ylRl~~ma~~k~~~ 546 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH----------PGYIDAYLRLGCMARDKNNL 546 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC----------chhHHHHHHhhHHHHhccCc
Confidence 88765 112222 223335566667789999999999997654 221 1222232222345788
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhc------------C
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRK------------G 463 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~------------~ 463 (662)
.+|...++.+......++.+++.+...+.+...+..|.+-|....+. ...+|+.+...|.+.|.+. +
T Consensus 547 ~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 547 YEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 89999999999999889999999999999999998888877666542 2235777777777766532 3
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (662)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (662)
..+.|+++|.+.++.. +-|...-+.+...++..|++.+|..+|.++.+.... ...+|-.++++|...|++..|+++|+
T Consensus 627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 4577889998888743 345667777888899999999999999999887443 45678889999999999999999999
Q ss_pred HHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHH-------------------HhcC
Q 006071 544 LMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL-------------------LAAG 600 (662)
Q Consensus 544 ~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------~~~g 600 (662)
.....-..-+. ..++.++.+.|.+.+|.+.+..+....|......++ ++-++ ...+
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN-~a~v~kkla~s~lr~~k~t~eev~~a~~ 783 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN-LALVLKKLAESILRLEKRTLEEVLEAVK 783 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH-HHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 99875443332 346667778999999999999999887665544443 22222 2345
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 006071 601 KTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 601 ~~~~A~~~~~~~~~~~~~ 618 (662)
..+.|.++|.++...++.
T Consensus 784 ~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 784 ELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 677788899998877665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-19 Score=186.91 Aligned_cols=430 Identities=15% Similarity=0.088 Sum_probs=281.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
+......+.+.|+++.|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334455566677777777777777664 4566667777777777777777777777777653 3345567777777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 006071 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 323 (662)
.|++++|+..|..+...+ ..+......++..+.. ..+.......... .|.+...+..+...+ ..........
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHHHH-HHccCCcchh
Confidence 777777777666554332 1111111111111111 1222222222222 222222222222221 1111111111
Q ss_pred HHHHHHhCCCCCC-hhhHHHHHHH---HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 324 VLKAMIRLSIPTE-AGHYGILIEN---FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
-+...... .+. ...+..+... ....+++++|...|+..++.+ ...+.....+..+...+...|++++|
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 11111111 111 1111111111 123467889999999886532 00112334577777788889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
...+++.....|.+...|..+...+...|++++|...|+.+.+.+ +.+...|..+...+...|++++|...|++.++..
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999888888899999999999999999999999988764 3367889999999999999999999999998743
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCH---
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV--PNF--- 554 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~--- 554 (662)
+.+...+..+...+.+.|++++|+..+++.++..+. +...+..+..++...|++++|++.|++....... +..
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 234566777788889999999999999999887544 6778888999999999999999999998873211 111
Q ss_pred HHHH----HHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 555 DSLL----SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 555 ~~~~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
..++ ..+...|++++|.+++++++..++. +...+..+++++...|++++|++.+++..+..
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1111 1223469999999999999988643 34567789999999999999999999987764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-19 Score=183.08 Aligned_cols=252 Identities=18% Similarity=0.134 Sum_probs=126.1
Q ss_pred CChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhc
Q 006071 316 GHLNAAADVLKAMIRLS--IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393 (662)
Q Consensus 316 g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (662)
+.+++|...|+.....+ .+.....+..+...+...|++++|+..+++.++.. | .....|..+...+...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~----P-----~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD----P-----RVTQSYIKRASMNLEL 378 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C-----CcHHHHHHHHHHHHHC
Confidence 44555555555554432 12223344444555555555555555555554321 1 1122444445555555
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 473 (662)
|++++|...|+.+.+..+.++.++..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..++
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555555555555555555555555666666666665555543 2234455555555555666666666666
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL------DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+.++. .+.+...+..+...+...|++++|+..|++.+...+.... ..++.....+...|++++|++++++.+.
T Consensus 458 ~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 458 RCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55542 1223444555555555566666666666665554322111 0111111222234566666666665554
Q ss_pred CCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 548 SGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 548 ~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
..|+ ...++.++...|++++|+.+++++++.
T Consensus 537 --l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 537 --IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred --cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2233 123455555566666666666665554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-18 Score=165.72 Aligned_cols=610 Identities=14% Similarity=0.105 Sum_probs=375.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
+.+...|++++|.+++.++.+++ |..+.+|..+..+|-..|+.+++...+-.+....+. |...|..+.....+.|.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccH
Confidence 36667799999999999999998 899999999999999999999999887766555443 779999999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHH----HHHHHHhcCCHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV----MLWGFFLSLKLETAIRF 183 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~ 183 (662)
+.|.-.|.++.+.. +++...+-.-+..|-+.|+...|.+-|.++....++.|..-+.. ++..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999875 45555555567788899999999999999988744333333333 35566677777999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC---------------------------CCHhhHH
Q 006071 184 FEDMKSR-GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE---------------------------PTVISYT 235 (662)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~ 235 (662)
++..... +-..+...++.++..+.+...++.+......+...... ++..+ .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 9888763 22335677889999999999999999888777762222 22222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 006071 236 TMIKGYVAVERADDALRIFDEMKSFDV--KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (662)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (662)
.++-++.+.+..+....+...+....+ .-+...|.-+..++...|++.+|+.++..+....... +..+|..++.+|.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYM 460 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHH
Confidence 222233333444444444444444443 3345678889999999999999999999998875444 6789999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhc
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (662)
..|.++.|.+.|+.++... |.+...-..|...+.+.|+.++|.+.+..+...+....+.....|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998864 566777778888999999999999999987532211112233344444444444455556
Q ss_pred CChhHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHhcCChhHHHHHHH------HHhhCC
Q 006071 394 GQTGKAEIFFRQLMKKG-----------------------VLDPVAFNNLIRGHSKEGNPDSAFEIVK------IMGRRG 444 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~ 444 (662)
|+.++-......+.... +........++.+-.+.++......-.. .....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 66554333222222110 0011111122222222222111111000 000011
Q ss_pred CCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 006071 445 VPRDA--DAYICLIESYLRKGEPADAKTALDSMIEDGH--SPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK---- 513 (662)
Q Consensus 445 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 513 (662)
..-+. ..+.-++.++++.+++++|..+...+..... .++. ..-...+.++...+++..|...++.++..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 11110 1223334444455555555555444443211 1111 11112223334444444444444444332
Q ss_pred -----------------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCHHHH
Q 006071 514 -----------------------------------GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFDSL 557 (662)
Q Consensus 514 -----------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~ 557 (662)
....+..........+...+.+..|++.+-++.. .+-.|-.+..
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~ 779 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLC 779 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1111122222223344456778888887766665 3334543321
Q ss_pred HH-HH-----h-----ccCCHHHHHHHHHHHhcCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----
Q 006071 558 LS-VL-----S-----EKGKTIAAVKLLDFCLGRDCI--IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----- 619 (662)
Q Consensus 558 ~~-~~-----~-----~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----- 619 (662)
+. ++ . +.-..-.+...+++-.+.... .....| .++++|-..|=..-|+.++++.+.....+
T Consensus 780 lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~Y-NigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~ 858 (895)
T KOG2076|consen 780 LGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFY-NIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPK 858 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHHHcccHHHHHHHHHHHhCCCcccccccc
Confidence 11 11 1 111223344444433332211 224445 59999999999999999999999874321
Q ss_pred ----c--HhhHHHHHHHHHhcCCcchhHHHHH
Q 006071 620 ----D--WKSSDKLIAGLNQEGNTKQADILSR 645 (662)
Q Consensus 620 ----~--~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (662)
+ -.+...|.-.|.++|+.+-|..+.+
T Consensus 859 ~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 859 EDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred CCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 1 1122237778999999999976654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-19 Score=186.97 Aligned_cols=334 Identities=9% Similarity=0.004 Sum_probs=222.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
...+...+.+.|++++|+.+++.++... |.++.++..++.++...|++++|...++++....+. +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3455556667777777777777777765 666667777777777777777777777777766543 5666777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..|++++|...++++.... +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 7777777777777777643 345566777777777777777777777776554322 22233222 23566777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHh
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD----ALRIFDEMK 258 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~ 258 (662)
.++.+.+....++...+..+..++...|++++|...++...... +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 77777665433344444555566777777777777777777653 3455666677777777777764 677777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 006071 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG 338 (662)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (662)
... +.+...+..+...+...|++++|...+++.... .|.+..++..+..++.+.|++++|...|+.+...+ +.+..
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 642 334556777777777777777777777777764 56566677777777777777777777777776643 22223
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 339 HYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.+..+..++...|++++|...|+++++..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33334556677777777777777776543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-20 Score=185.64 Aligned_cols=295 Identities=16% Similarity=0.152 Sum_probs=141.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcC
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIESYGKKG 105 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 105 (662)
.....|+++.|+..|+.+.+.+ |.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445556666666666666554 44555556666666666666666666665554321111 133455555555556
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcCCHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR----HTYNVMLWGFFLSLKLETAI 181 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~ 181 (662)
+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6666666665555432 234445555555555556666666555555544322211 12233334444555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
..++++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 5555554432 11333444444555555555555555555544321111233444445555555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCC
Q 006071 262 VKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK---SGHLNAAADVLKAMIRLS 332 (662)
Q Consensus 262 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 332 (662)
.|+...+..+...+.+.|++++|..+++++.+. .| +...+..++..+.. .|+.+++..+++.+.+.+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 233333344444445555555555555544443 23 33333333333332 234444444444444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-20 Score=181.61 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=177.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHhcCChH
Q 006071 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 319 (662)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+......+. ....+..++..|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444555554444432 22333444444444555555555555554444211110 0123444555555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.. +..........+..+...+...|++++|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 5555555555432 3344555555666666666666666666554322 1100000011234455566677777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
...|+++.+..+.+..++..++..+...|++++|.++++.+...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777776666666777777888888888888888888776533322456777778888888888888888887764
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCC
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
.|+...+..+...+.+.|++++|..+++++++. .|+...+..++..+.. .|+.++++.+++++.+.++.|+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 355555667777788888888888888877765 3556666666655553 4577788888887776444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-18 Score=182.55 Aligned_cols=413 Identities=12% Similarity=0.048 Sum_probs=250.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006071 160 TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIK 239 (662)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 239 (662)
++....-.+......|+.++|+.++....... +.+...+..+..++...|++++|..+|+...... +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33344444455555566666666666555421 2244445555566666666666666666655431 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
.+...|++++|+..++++.... +.+.. +..+..++...|+.++|+..++++.+. .|.+...+..+...+...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChH
Confidence 5556666666666666655441 22333 555555555566666666666666553 4445555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCCh---
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT--- 396 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 396 (662)
.|+..++.+.. .|+ +..-+ ....+.....- .+.......+++
T Consensus 168 ~Al~~l~~~~~---~p~---~~~~l-------~~~~~~~~~r~----------------------~~~~~~~~~~r~~~a 212 (765)
T PRK10049 168 PALGAIDDANL---TPA---EKRDL-------EADAAAELVRL----------------------SFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHhCCC---CHH---HHHHH-------HHHHHHHHHHh----------------------hcccccChhHHHHHH
Confidence 55555544332 111 00000 00000000000 000001112233
Q ss_pred hHHHHHHHHHHhcC---CCCHHHH----HHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHhcCChHHH
Q 006071 397 GKAEIFFRQLMKKG---VLDPVAF----NNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 397 ~~a~~~~~~~~~~~---~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 468 (662)
++|+..++.+.+.. +.+...+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 67888888888653 2211111 11133456779999999999999887532 322 222357789999999999
Q ss_pred HHHHHHHHHcCCCC---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHh
Q 006071 469 KTALDSMIEDGHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV-----------KEN---LDLVAKILEALLM 531 (662)
Q Consensus 469 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~ 531 (662)
...++++.+..... .......+..++...|++++|..+++.+....+ .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999987643111 123455666678999999999999999987643 123 2345567788899
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 532 RGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
.|++++|+++++++.. ..|+. ..++..+...|++++|++.+++++...|. +...+...+.++.+.|++++|.+
T Consensus 372 ~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999987 44552 34666777899999999999999998643 34456678889999999999999
Q ss_pred HHHHHHHcCC
Q 006071 608 ILFKIMEKGG 617 (662)
Q Consensus 608 ~~~~~~~~~~ 617 (662)
.++++++..+
T Consensus 449 ~~~~ll~~~P 458 (765)
T PRK10049 449 LTDDVVAREP 458 (765)
T ss_pred HHHHHHHhCC
Confidence 9999998643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-18 Score=182.49 Aligned_cols=424 Identities=12% Similarity=0.063 Sum_probs=234.0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
+.++.-..-.+.+....|+.++|++++.+..... +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3344444444445555555555555555544311 1233345555555555555555555555554432 2334444455
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
...+...|++++|+..++++++.. +.+.. +..+..++...|++++|...++++.+..+. +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 555555555555555555554431 22333 444444455555555555555555554222 333444444445555555
Q ss_pred HHHHHHHHHHHHCCCCCCH------hhHHHHHHHH-----HhcCCH---HHHHHHHHHHhhC-CCCCCHH-HHH----HH
Q 006071 213 DEAEKLFAEMKEKNIEPTV------ISYTTMIKGY-----VAVERA---DDALRIFDEMKSF-DVKPNAV-TYT----AL 272 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l 272 (662)
+.|...++.... .|+. .....++... ...+++ ++|++.++.+.+. ...|+.. .+. ..
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 555555544332 1110 0111111111 111223 5667777776643 1122221 111 11
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 006071 273 LPGLCDAGKMVEVQKVLREMVERYIP-PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT---EAGHYGILIENFC 348 (662)
Q Consensus 273 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 348 (662)
+.++...|++++|+..|+.+.+.+.. |.+ ....+...|...|++++|...|+.+.+..... .......+..++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 33445667888888888887776421 312 22234667788888888888888876543111 1234555666778
Q ss_pred cCCcHHHHHHHHHHHHHhhhhcc---CCCCCCCcc---ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 349 KAEMYDRAIKLLDKLVEKEIILR---PQSTLDMEA---SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 349 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
..|++++|...++.+.+...... ......|+. ..+......+...|+.++|+..++.+....|.++..+..++.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 88888888888888865421000 000112232 233455666777888888888888888888888888888888
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRS 489 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (662)
.+...|++++|++.++.+.... +.+...+...+..+.+.|++++|..+++++++. .|+......
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~ 465 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQR 465 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8888888888888888887754 334666677777788888888888888888864 355444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-15 Score=142.32 Aligned_cols=575 Identities=12% Similarity=0.077 Sum_probs=373.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 113 (662)
++...|..+++...+.+ |.++..|..-.+.--..|.+..|..+..+--+. ++.+..+|.--+ +....+.|..+
T Consensus 265 ~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 37889999999999988 788888888888778888888888776654332 223455554333 22233334444
Q ss_pred HHHHHHcC------------------------------CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHH
Q 006071 114 FDIMKQLG------------------------------VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHT 163 (662)
Q Consensus 114 ~~~~~~~g------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 163 (662)
.-...... +|.++..|-.. ....+.+.|.-++.+..+. ++.+..
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~d- 411 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMD- 411 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHH-
Confidence 43333321 22333333322 2334455566666666553 222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH----HCCCCCCHhhHHHHHH
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK----EKNIEPTVISYTTMIK 239 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 239 (662)
|..++++..-++.|..+++...+. ++.+...|.+-...--.+|+.+...+++++-. ..|+..+...|..=..
T Consensus 412 ---LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 412 ---LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 233455566677777777777765 55567777766666667777777777766533 4566667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPN--AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGH 317 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (662)
.|-..|..-.+..+....+..|+... ..||..-...|.+.+.++-+..+|...++- .|.+...|......--..|.
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCc
Confidence 77777777777777777766665432 346777777777777777777777777763 56567777777776667777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChh
Q 006071 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTG 397 (662)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 397 (662)
.+....+|.+.... ++-....|......+-..|+...|..++..+.+.. + .+...|...+.....+.+++
T Consensus 566 ~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~----p-----nseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 566 RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN----P-----NSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----C-----CcHHHHHHHHHHhhccccHH
Confidence 77777777777665 34555556666666667777777877777776543 1 23456666666677777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
.|..+|.+.... .++..+|..-+......++.++|.+++++..+. ++.-...|..+...+-+.++.+.|...|..-.+
T Consensus 636 raR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 636 RARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 887777776654 345556666666666677778888877777764 232345667777777777777777777766554
Q ss_pred cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----
Q 006071 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---- 553 (662)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---- 553 (662)
. .+-....|..+...-.+.|.+-.|..++++..-++++ +...|-..++.-.+.|+.+.|..+..+.++ --|+
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~L 789 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLL 789 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchh
Confidence 2 2334556666666666777888888888888777776 677777788888888888888877766665 2222
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
+..-+....+.++...+...+++ +..++.+...++..++...+++.|.+.|.+.+..+ +....+|.-+..-+..
T Consensus 790 WaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHH
Confidence 22223333344454444444442 34566777778888888889999999999888764 3355566667777888
Q ss_pred cCCcchhHHHHHHhhh
Q 006071 634 EGNTKQADILSRMIRG 649 (662)
Q Consensus 634 ~g~~~~a~~~~~~~~~ 649 (662)
+|.-++-..+..+...
T Consensus 864 hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCET 879 (913)
T ss_pred hCCHHHHHHHHHHHhc
Confidence 8877776666555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-18 Score=177.78 Aligned_cols=394 Identities=11% Similarity=0.046 Sum_probs=303.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLF-NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
.+.++.+++.---.|....+...- ..+..-...++..+.+.|++++|..+++......+. +...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 456677888777777776654311 223345666777888999999999999999887655 566677777788889999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
+.|...|+++.+.. |.+...+..+...+...|++++|+..+++..... +.+...+..+...+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999865 4567788889999999999999999999998763 335677888888999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006071 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (662)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (662)
...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++.+.... +.+..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 776433 33344333 3478899999999999998776433344555666788899999999999999998764 45677
Q ss_pred HHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 006071 268 TYTALLPGLCDAGKMVE----VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGIL 343 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 343 (662)
.+..+...+...|++++ |...++++... .|.+..++..+...+...|++++|...+++..... +.+...+..+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 88889999999999986 89999999885 68788999999999999999999999999998864 5566778888
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-HH----HH
Q 006071 344 IENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD-PV----AF 417 (662)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~ 417 (662)
..++.+.|++++|+..|+.+.+.. |+. ..+..+..++...|+.++|...|+.+.+..|.+ +. +.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~----------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~ 394 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK----------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGL 394 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHH
Confidence 999999999999999999986543 332 233445667889999999999999998876322 22 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHh
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
..+-.++...+..++....+.++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 395 LALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHhcCCccchhhHHHHHh
Confidence 334444444455544434444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-16 Score=164.35 Aligned_cols=448 Identities=12% Similarity=0.050 Sum_probs=325.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
+..+.|+++.|++.|+.+++.. |.++.....++.++...|+.++|+..+++..... +........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 5558999999999999999887 5553333388888899999999999999998321 224444555567888999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
+|+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999875 455777888889999999999999999999775 4555555444444444566666999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhH------HHHHHHH-----HhcCCH---HHHHHHH
Q 006071 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISY------TTMIKGY-----VAVERA---DDALRIF 254 (662)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~---~~a~~~~ 254 (662)
+..+ .+...+..+..++.+.|-...|.++..+-... +.+....+ ..+++.- ...+++ +.|+.-+
T Consensus 197 ~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 9843 37788888999999999999998777664321 11111111 0111100 011233 3445555
Q ss_pred HHHhh-CCCCCC-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 255 DEMKS-FDVKPN-AVT----YTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 255 ~~~~~-~~~~~~-~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
+.+.. .+-.|. ... ..-.+-++...|++.++++.|+.+...+.+. ...+...++.+|...+..++|..+|..+
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 55443 121232 222 2234557788999999999999999887543 4568889999999999999999999999
Q ss_pred HhCC-----CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc---CCCCCCCccc---cHHHHHHHHHhcCChh
Q 006071 329 IRLS-----IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR---PQSTLDMEAS---SYNPMIQHLCHNGQTG 397 (662)
Q Consensus 329 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~l~~~~~~~~~~~ 397 (662)
.... .+++......|.-+|...+++++|..+++.+.+...... ......|+.. .+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7643 123344457789999999999999999999976321000 0011123322 2334566778889999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
+|++.++.+....|.|+.....+...+...|.+.+|...++...... +-+..+....+.++...+++++|..+.+...+
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999998889999999999999999999999999997777653 33667788888888899999999999988886
Q ss_pred cCCCCcHHhHH
Q 006071 478 DGHSPASSLFR 488 (662)
Q Consensus 478 ~~~~~~~~~~~ 488 (662)
. .|+.....
T Consensus 513 ~--~Pe~~~~~ 521 (822)
T PRK14574 513 R--SPEDIPSQ 521 (822)
T ss_pred h--CCCchhHH
Confidence 4 35554333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-15 Score=142.37 Aligned_cols=534 Identities=11% Similarity=0.089 Sum_probs=349.3
Q ss_pred HHHHHHhhcCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 9 RLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
.+-++++.+|.++.. -+++.--..+...=..+++.+++.- |.+...|...+ ...+.+.|+-++.+.++- ++
T Consensus 337 vvA~Avr~~P~Sv~l--W~kA~dLE~~~~~K~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 337 VVANAVRFLPTSVRL--WLKAADLESDTKNKKRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHHHhCCCChhh--hhhHHhhhhHHHHHHHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHh-cc
Confidence 344566666544322 2222222334445556677777654 66666665554 334556677777777654 23
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHH----HhCCCCcCHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKM----LSEGIEPTRHTY 164 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~ 164 (662)
.+...|. ++++...++.|..+++..++. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|
T Consensus 408 ~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 3444444 344556677788888777763 5667777777666666777777777776554 334777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006071 165 NVMLWGFFLSLKLETAIRFFEDMKSRGISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (662)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (662)
..=...|-..|..-.+..+.......|+.-. ..+|+.-...|.+.+.++-|..+|....+- ++-+...|......--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 7777777777777777777777776665422 356777777777788888888887777664 3445667777777666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 006071 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322 (662)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 322 (662)
..|..+.-..+|+++... ++-....|......+-..|+...|..++..+.+. .|++..+|..-+.....+..++.|.
T Consensus 562 ~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred hcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHH
Confidence 777777777777777665 3444555666666666778888888888777775 4557777777777777777888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc-cccHHHHHHHHHhcCChhHHHH
Q 006071 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME-ASSYNPMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 401 (662)
.+|.+.... .++..+|..-+...--.+..++|++++++.++.. |+ ...|..+...+-+.++.+.|..
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHH
Confidence 887777653 5666666666666666677788888877776544 22 2356666677777778888887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006071 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS 481 (662)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 481 (662)
.|..-.+..|..+..|..|...--+.|.+-+|..+++...-.++. +...|...|..-.+.|+.+.|..+..+.++ ..+
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp 784 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ-ECP 784 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC
Confidence 777777777777777777777777777788888888777766544 677777777777788888888777777765 344
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-HHHH--
Q 006071 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF-DSLL-- 558 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~-- 558 (662)
.+...|...|....+.++-..+...+++ ..-|+.....+...+....+++.|.+-|.+.++ ..|++ +.+.
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~f 857 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWF 857 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHH
Confidence 4556666666655555553333333322 222455556666777777777777777777776 45553 2233
Q ss_pred -HHHhccCCHHHHHHHHHHHhcCC
Q 006071 559 -SVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 559 -~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
......|.-++-.+++.+.....
T Consensus 858 ykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccC
Confidence 23345676666667776665554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-16 Score=162.53 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=101.8
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCHHHHH
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFN 418 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 418 (662)
-++...+++.++++.|+.+ +..+.+....+-..+.++|...+++++|+.+++.+.... +++.....
T Consensus 300 ~aL~~r~r~~~vi~~y~~l--------~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAM--------EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDAD 371 (822)
T ss_pred HHHHHhhhHHHHHHHHHHh--------hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHH
Confidence 3455666666666666666 333322223344556666666666666666666665433 11222235
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-----------CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006071 419 NLIRGHSKEGNPDSAFEIVKIMGRRGV-----------PRDA---DAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS 484 (662)
Q Consensus 419 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 484 (662)
.|.-++...+++++|..+++.+.+..+ .|+. ..+..++..+...|+..+|.+.++++.... +-|.
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~ 450 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQ 450 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 566666666666666666666654211 0111 122334444555566666666666655422 2344
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.....+...+...|.+.+|...++.+....+. +.......+.++...|++++|..+.+.+.+
T Consensus 451 ~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 451 NLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45555555555566666666666554444333 344444555555555666666655555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-15 Score=145.92 Aligned_cols=583 Identities=15% Similarity=0.150 Sum_probs=364.9
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (662)
++..|..++...|+.+.++..+-.+--.. |.+...|..+.....+.|++++|.-+|.+.++..+. +....-.-...|
T Consensus 175 ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~ 251 (895)
T KOG2076|consen 175 AYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLY 251 (895)
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHH
Confidence 56888889999999999998877665554 788899999999999999999999999999987654 555555667788
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHH----HHHHHHHHcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCC
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYD----ALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~ 176 (662)
-+.|+...|..-|.++.....+.+-.-.. ..+..+...++-+.|.+.++..... +-..+...++.++..+.+...
T Consensus 252 ~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q 331 (895)
T KOG2076|consen 252 QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ 331 (895)
T ss_pred HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence 99999999999999999865322222222 2355566677779999988888663 223455567788888888899
Q ss_pred HHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC--C
Q 006071 177 LETAIRFFEDMKSRGISL---------------------------DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN--I 227 (662)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~ 227 (662)
++.+......+..+...+ +..+ --++-++......+....+...+...+ +
T Consensus 332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~ 410 (895)
T KOG2076|consen 332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWV 410 (895)
T ss_pred HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCCh
Confidence 999988887777622222 2222 122333444445555555555555554 3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 006071 228 EPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMK 307 (662)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 307 (662)
.-+...|.-+..++...|++..|+.+|..+......-+...|..+..+|...|.++.|.+.|+..+.. .|.+..+...
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~ 488 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARIT 488 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhh
Confidence 34556788999999999999999999999987655556789999999999999999999999999985 7878899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc--------
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIR--------LSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR-------- 371 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 371 (662)
|...+.+.|+.++|.++++.+.. .+..|+..........+.+.|+.++-+.+...++......+
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k 568 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKK 568 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999998642 22345555556667778888887776666555544322100
Q ss_pred ------CCCCCCCccccHHHHHHHHHhcCChhHHHHHHHH------HHhcC--CCCH-HHHHHHHHHHHhcCChhHHHHH
Q 006071 372 ------PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQ------LMKKG--VLDP-VAFNNLIRGHSKEGNPDSAFEI 436 (662)
Q Consensus 372 ------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~ 436 (662)
...+......+......+-.+.++......-... ....+ ..+- ..+..++..+++.+++++|..+
T Consensus 569 ~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~v 648 (895)
T KOG2076|consen 569 KRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSV 648 (895)
T ss_pred HHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0000011111111111111111111111110000 00000 0011 1223344444555555555555
Q ss_pred HHHHhhCCC-CCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CCc-HHhHH-------------------
Q 006071 437 VKIMGRRGV-PRDA----DAYICLIESYLRKGEPADAKTALDSMIED-GH--SPA-SSLFR------------------- 488 (662)
Q Consensus 437 ~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~-~~~~~------------------- 488 (662)
...+..... .-+. ..-...+.+....+++..|...+..|... ++ .|. ...|+
T Consensus 649 v~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 649 VFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443211 0011 11222333444445555555555444432 00 011 11111
Q ss_pred ----------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------CCCHHHHHHHH
Q 006071 489 ----------------SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----------RGHVEEALGRI 542 (662)
Q Consensus 489 ----------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~ 542 (662)
.....+...+.+..|+..+-++...++..+...+ .++.++.. +-.+-.++.++
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl-~lglafih~a~qr~v~~Rh~~i~qG~afL 807 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL-CLGLAFIHLALQRRVSNRHAQIAQGFAFL 807 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1111234477889999988888777665222211 12222211 11234556666
Q ss_pred HHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC---------C---hhhHHHHHHHHHhcCCHHHHH
Q 006071 543 DLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII---------D---LASYEKVLDALLAAGKTLNAY 606 (662)
Q Consensus 543 ~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~---~~~~~~l~~~~~~~g~~~~A~ 606 (662)
++-.+....-+ .-.++.+|...|-..-|..+++++++..+.+ + ...| .+.-+|...|+..-|.
T Consensus 808 ~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~-NL~LIY~~SGn~~lAr 886 (895)
T KOG2076|consen 808 KRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY-NLHLIYKKSGNMQLAR 886 (895)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh-hhhhhhccCCcHHHHH
Confidence 55554222111 3458889999999999999999999985332 1 2334 4777888999999999
Q ss_pred HHHHHH
Q 006071 607 SILFKI 612 (662)
Q Consensus 607 ~~~~~~ 612 (662)
+++.+-
T Consensus 887 qil~ky 892 (895)
T KOG2076|consen 887 QILEKY 892 (895)
T ss_pred HHHHhh
Confidence 988763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-14 Score=132.37 Aligned_cols=437 Identities=12% Similarity=0.112 Sum_probs=285.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
.++++..|..+|+.++..+ ..+...|...+.+-.++..+..|..++++.+..-+. -...|.-.+-.--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHH
Confidence 3557778888888888776 567778888888888888888888888887765322 2345555555556678888888
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
++|++..+ ..|+..+|.+.++.-.+...++.|..+++..+- +.|++.+|......-.+.|....+..+|+.....-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 88888776 468888888888888888888888888888765 45788888777777778888888888888776541
Q ss_pred C--CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHH--------HHHHhh
Q 006071 192 I--SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRI--------FDEMKS 259 (662)
Q Consensus 192 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~ 259 (662)
- ..+...+++....-.++..++.|.-+|.-.... ++.+ ...|..+...--+-|+.....+. ++.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 0 112334445555555667778888888777654 2322 23344444433344543333222 233333
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHH--------HHhcCChHHHHHHHHHHHh
Q 006071 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN-SVFMKLLGV--------QCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~ 330 (662)
.+ +-|-.+|-..++.....|+.+...++|++++.. ++|... ..|...+-. -....+.+.+.++|...++
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 32 456667777777777778888888888887765 333221 122221111 1235677777777777776
Q ss_pred CCCCCChhhHHHHHHHH----HcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 331 LSIPTEAGHYGILIENF----CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQL 406 (662)
Q Consensus 331 ~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (662)
. +|....||..+--+| .++.++..|.+++..++ |..|-..++...|..-.+.++++.+..++++.
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----------G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----------GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3 455556655544443 34566777777776663 33456667777777777777888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 006071 407 MKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS 485 (662)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 485 (662)
+.-+|.+..+|......-...|+.+.|..+|..+.+.. .......|...|+.-...|.++.|..+++++++.. +...
T Consensus 464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~k 541 (677)
T KOG1915|consen 464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVK 541 (677)
T ss_pred HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccch
Confidence 87777777777777777777788888888887776642 12223556666776677777888888888777542 4444
Q ss_pred hHHHHH
Q 006071 486 LFRSVM 491 (662)
Q Consensus 486 ~~~~l~ 491 (662)
+|.++.
T Consensus 542 vWisFA 547 (677)
T KOG1915|consen 542 VWISFA 547 (677)
T ss_pred HHHhHH
Confidence 555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-15 Score=134.11 Aligned_cols=423 Identities=17% Similarity=0.212 Sum_probs=275.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC--ChhHH-HHHHHHHH----------------
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG--RYMMA-KRYFNKML---------------- 153 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A-~~~~~~~~---------------- 153 (662)
+-+.++.. ..+|.+.++.-+|+.|.+.|.+.++..-..|++.-+-.+ ++.-| .+.|-.|.
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44455543 467888888889999988887777776666655433211 11100 01111111
Q ss_pred ---hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 006071 154 ---SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT 230 (662)
Q Consensus 154 ---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 230 (662)
..-.+.+..+|..+|.++++....+.|..++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1113446778999999999999999999999999888788899999999987543322 789999999999999
Q ss_pred HhhHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHc-------CCC
Q 006071 231 VISYTTMIKGYVAVERADD----ALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE-VQKVLREMVER-------YIP 298 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~-------~~~ 298 (662)
..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++... ...
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998765 45788899999999999999999999988887644 55555555442 245
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc
Q 006071 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS----IPTE---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR 371 (662)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 371 (662)
|.+...|...+..|.+..+.+.|.++..-+.... ++|+ ..-|..+....|+....+.-...|+.+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l-------- 424 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL-------- 424 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 6777888889999999999999998876665421 2333 233566777888888899999999999
Q ss_pred CCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 006071 372 PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD 450 (662)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 450 (662)
.....-|+..+...++++..-.++++-.-.++.++...| ..+..... +++..+......|+..
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp 488 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTP 488 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCCh
Confidence 444556777888888888888888888888888887765 32222222 2233333322222211
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C---CCCHHHHH
Q 006071 451 ---AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG-V---KENLDLVA 523 (662)
Q Consensus 451 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~---~~~~~~~~ 523 (662)
-+.....-|+. .-.+.....-.++.+..++ ....+..+-.+.+.|..++|.+++..+.+.+ - .|......
T Consensus 489 ~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 489 EREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 11111111110 1111112222333333332 2334445555666666666666666664431 1 22222233
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
-++..-.+..++..|+..++-+..
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444555556666666666666644
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-14 Score=129.24 Aligned_cols=470 Identities=10% Similarity=0.092 Sum_probs=333.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 90 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
+...|......-..++++..|..+|+++.... ..+...|...+..-+++.....|..+++..+..=+..|. .|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 55666666666667778888888888887754 456667777778888888888888888888764222222 3333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (662)
.--..|++..|.++|+.-... .|+...|++.+..-.+.+.++.|..+++...-. .|++.+|.-....-.++|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 444568888888888887765 778888888888888888888888888887763 5888888888888888888888
Q ss_pred HHHHHHHHhhC-C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChHHHHHH-
Q 006071 250 ALRIFDEMKSF-D-VKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD--NSVFMKLLGVQCKSGHLNAAADV- 324 (662)
Q Consensus 250 a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~- 324 (662)
+..+|....+. | -..+...+.++...-.+...++.|.-+|+-.++. -|.+ ...|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 88888877653 1 0112233444444444667788888888888776 3333 45566666655566765544433
Q ss_pred -------HHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc--ccHHHHH--------
Q 006071 325 -------LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA--SSYNPMI-------- 387 (662)
Q Consensus 325 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-------- 387 (662)
|+.....+ +.|-.+|-..+..--..|+.+...++|+.++.. ++|-. ..|...+
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan---------vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN---------VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc---------CCchhHHHHHHHHHHHHHHHHH
Confidence 34444443 677788888888888888999999999887532 22211 1222222
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 006071 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL----IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (662)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (662)
-.-....+++.+.++|+..++.-|....||..+ .....++.++..|.+++.... |..|...++...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHh
Confidence 112356889999999999988666665665544 344457889999999998776 45789999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
+++....++++.++-+ +-+..+|......-...|+.+.|..+|.-+++.. .......|.+.+..-...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999754 3356788888887788999999999999998873 3434566778888888999999999999
Q ss_pred HHHHh-CCCCCCHHHHHHHHh-----ccC-----------CHHHHHHHHHHHhcC
Q 006071 543 DLMMQ-SGSVPNFDSLLSVLS-----EKG-----------KTIAAVKLLDFCLGR 580 (662)
Q Consensus 543 ~~~~~-~~~~p~~~~~~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 580 (662)
+++++ ....+.+.+++..-. ..| ....|..+|+++...
T Consensus 531 erlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 531 ERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 99997 333444444433221 234 567788888877653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-15 Score=134.36 Aligned_cols=463 Identities=13% Similarity=0.168 Sum_probs=310.2
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH--HHhcCChHHH-HHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEI--LGRVGKLNHA-RCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
..+|.++.+.-+|+.|...+ .+.++..-..+++. |....++.-| .+.|-.|.+.|-. +..+| +.|.+
T Consensus 126 IS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~v 195 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAV 195 (625)
T ss_pred HhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccH
Confidence 35677788888888887776 56666665555543 2233333322 3445555554432 23333 44444
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
.+ ++-+.. +.+..++..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|
T Consensus 196 Ad---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred HH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 43 333322 5678899999999999999999999999998777788999999999765432 237889999
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChHHH----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHhh---
Q 006071 188 KSRGISLDVVTYNTMINGYNRFKKMDEA----EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD-ALRIFDEMKS--- 259 (662)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~--- 259 (662)
......||..|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 9999999999999999999999988764 5788889999999999999999999999888754 4445555432
Q ss_pred -CCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 260 -FDVK----PNAVTYTALLPGLCDAGKMVEVQKVLREMVERY---IPPK---DNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 260 -~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
..++ .|...|...+..|.+..+.+.|.++..-+.... ..++ ....|..+....++....+.....|+.+
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122 245667888889999999999988876654321 1121 2335667788888889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006071 329 IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK 408 (662)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (662)
.-.-.-|+..+...++++.--.+.++-.-+++.+++.-+. +++. +.-++++..+..
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh-------------t~r~-----------~l~eeil~~L~~ 480 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH-------------TFRS-----------DLREEILMLLAR 480 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh-------------hhhH-----------HHHHHHHHHHhc
Confidence 8887788999999999999889999999899988854331 2222 222334444444
Q ss_pred cC-CCCHH---HHHHHHHHHHhcCChhHH-HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---
Q 006071 409 KG-VLDPV---AFNNLIRGHSKEGNPDSA-FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH--- 480 (662)
Q Consensus 409 ~~-~~~~~---~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 480 (662)
.. .|+.. -+.....-|+. ++.++ ...-.++.+.. ......+.++-.+.+.|..++|.+++..+.+.+-
T Consensus 481 ~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 481 DKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred CCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 33 22111 22222221111 22222 22233444433 4456677788888899999999999988865432
Q ss_pred -CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 481 -SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 481 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
.|.......++++....++...|..+++-+...+...-...-+.+...|.-...-.+|+.-+
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 23334444667777888889999999998877655433334444555444443334444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-15 Score=137.01 Aligned_cols=468 Identities=14% Similarity=0.093 Sum_probs=296.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChhH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD----EDMFEVLIESYGKKGIVQE 109 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 109 (662)
.-..+|+..|+-+.+..-+|.....-..+..++.+.+++.+|+++++.....-+..+ ..+.+.+...+.+.|++++
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 356678888877766654544444444566777888888888888876665433222 3345555566778888888
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC------------cCHHHHHHHHHH-----HH
Q 006071 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE------------PTRHTYNVMLWG-----FF 172 (662)
Q Consensus 110 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~ll~~-----~~ 172 (662)
|+.-|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+..... |+....+..+.. .-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 88888887764 366655444454555668888888888888654222 222222222211 00
Q ss_pred hcCCHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006071 173 LSLKLETAIRFFED---MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (662)
Q Consensus 173 ~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (662)
+. +-..|.+..-. +..--+.|+-.. -.+-+.+.+..-... +.-...-..-...+.+.|+++.
T Consensus 373 k~-~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 373 KE-NKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred Hh-hhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHH
Confidence 00 00111111111 111111111000 001111111111100 0000111112345778999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHH--HHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 250 ALRIFDEMKSFDVKPNAVTYTAL--LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
|+++++-+.+..-+.-...-+.+ +..+.--.++..|.++-+..+.. +.-+..+...-......+|++++|.+.|++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999888654322222222322 22222344677777777766553 222444444445555678999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
.+..........|+. .-.+-..|++++|+++|-++...- ..+...+..+...|....+...|++++-+..
T Consensus 516 al~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il---------~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 516 ALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL---------LNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 987543333333332 334667899999999998874332 1345566677778888899999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhH
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF 487 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 487 (662)
..-|.+|.+.+.|...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-++.++..|++.. -+.|+..-|
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kw 662 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKW 662 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHH
Confidence 888999999999999999999999998876555443 56688899999999999999999999999876 467999999
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006071 488 RSVMESLF-EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (662)
Q Consensus 488 ~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (662)
..++..|. +.|++++|..+++...+. +..+..++.-|++.+...|-
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88887765 589999999999998776 44488888888888877774
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-11 Score=116.59 Aligned_cols=541 Identities=12% Similarity=0.130 Sum_probs=322.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKK-GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
.-+..|...++.+.++|+....+..|+..... .+.....+|...+......|-++-+..++++..+ .++..-...
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHH
Confidence 34456666677777777777777777665442 1222344666666666666777777777777765 344445566
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCC--HHHHHH
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSE------GIEPTRHTYNVMLWGFFLSLKL---ETAIRFFEDMKSRGISLD--VVTYNT 201 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~ 201 (662)
+..++..+++++|.+.+...+.. .-+.+...|..+....++..+. -.+..++..+..+ -+| ...|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 66667777777777766665432 1123444455544444433222 2233444444433 223 345677
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHhh
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE----------------------RADDALRIFDEMKS 259 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~ 259 (662)
|.+.|.+.|.++.|..+|++.... ..++.-|..+..+|+.-. +++-...-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 777777777777777777776543 123333444444443221 11222223333322
Q ss_pred CC-----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----cHHHHHHHHHHHHhcCChHHHHH
Q 006071 260 FD-----------VKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK-----DNSVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 260 ~~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~ 323 (662)
.+ -+-+...|..-.. +..|+..+....+.++++. +.|. -...|..+...|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 11 1223334443333 3457778888888888775 3331 23578889999999999999999
Q ss_pred HHHHHHhCCCCCC---hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc---CCCCCC------CccccHHHHHHHHH
Q 006071 324 VLKAMIRLSIPTE---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR---PQSTLD------MEASSYNPMIQHLC 391 (662)
Q Consensus 324 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~l~~~~~ 391 (662)
+|++..+...+.- ..+|-.-..+=.+..+++.|+++.+.......... -+.+.+ .+...|...++..-
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9999887543322 23344444455566778888888877743221100 000111 12334566666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHh---cCChHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLR---KGEPAD 467 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~ 467 (662)
..|-++....+++++......+|.........+-...-++++.+++++-...-..|+. ..|+..+.-+.+ ....+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 7788999999999999998778887777777777778889999999887765344554 677777766654 246799
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 468 AKTALDSMIEDGHSPASSLFRSVME--SLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRID 543 (662)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (662)
|..+|++.++ |.+|...-..-++- .-.+.|....|+++++++... +++ -...|+.++.--...=-+....++|+
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 9999999998 77665432222222 223468889999999997654 332 23445554432222222333455666
Q ss_pred HHHhCCCCCCHH------HHHHHHhccCCHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 544 LMMQSGSVPNFD------SLLSVLSEKGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 544 ~~~~~~~~p~~~------~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+..+ .-|+.. .+.+.-.+.|..+.|+.++..+.+. +|..+...|...-.-=.+.|+-+--.+.+
T Consensus 647 kaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 647 KAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6666 344422 2444555789999999999977775 34445666765555557889844443333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-13 Score=123.14 Aligned_cols=476 Identities=12% Similarity=0.081 Sum_probs=298.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 006071 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN-VMLWGFFLSLKLETAIRFFEDMKSRGISLD----VVTYNTM 202 (662)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l 202 (662)
....|.+.|..+....+|+..|+-+++...-|+..... .+-..+.+...+.+|+++|......-+..+ +...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 33445556666777888999998888776667655432 233456677888999999988776522222 3345555
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC------------CHHHHH
Q 006071 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP------------NAVTYT 270 (662)
Q Consensus 203 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~ 270 (662)
...+.+.|.++.|...|+...+. .|+..+-..|+-++...|+.++..+.|..|+..-..| +....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 56678899999999999988775 5788777777778888899999999999987532222 222222
Q ss_pred HHHHH-----HHhCCCHHHHHHHHH---HHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 271 ALLPG-----LCDAGKMVEVQKVLR---EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 271 ~ll~~-----~~~~g~~~~a~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
..+.. .-+ .+-..|++..- +++.--+.| + |.. | .+-+.+.++..... +.-...--.
T Consensus 361 eai~nd~lk~~ek-~~ka~aek~i~ta~kiiapvi~~-~---fa~--------g-~dwcle~lk~s~~~--~la~dlei~ 424 (840)
T KOG2003|consen 361 EAIKNDHLKNMEK-ENKADAEKAIITAAKIIAPVIAP-D---FAA--------G-CDWCLESLKASQHA--ELAIDLEIN 424 (840)
T ss_pred HHHhhHHHHHHHH-hhhhhHHHHHHHHHHHhcccccc-c---hhc--------c-cHHHHHHHHHhhhh--hhhhhhhhh
Confidence 22211 111 11111222211 111111111 1 100 0 01112222111110 000001111
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH--HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN--PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (662)
-...|.+.|+++.|+++++-+...+. +.....-+ +++.......++..|.++-+........++...+.-
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdn--------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nk 496 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDN--------KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNK 496 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccc--------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcC
Confidence 23457789999999999887743221 11111111 122222224577788888888777766677666665
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCH
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRV 500 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (662)
...-...|++++|.+.+++.......-....|+ +.-.+-..|+.++|+.+|-++-.- +..+..++..+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 665667899999999999998753222223333 233466789999999999876531 234566777788888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH-hccCCHHHHHHHHHH
Q 006071 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVL-SEKGKTIAAVKLLDF 576 (662)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~-~~~g~~~~A~~~~~~ 576 (662)
..|++++-+.... +..++..+..|...|-+.|+-..|.+..-.-- .+-|. ...|+.+| ....-+++|+.+|++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999888765 44478889999999999999999988654332 24444 23344444 466778899999998
Q ss_pred HhcCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCc
Q 006071 577 CLGRDCIIDLASYE-KVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 577 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (662)
+.-. .|+-.-|. .++.++.+.|++..|++.++.+..+- +.+..-...|++.+-..|-.
T Consensus 652 aali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 652 AALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhccccch
Confidence 7765 45555554 35566677999999999999988764 34666666777777777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=114.75 Aligned_cols=225 Identities=11% Similarity=0.079 Sum_probs=145.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHH-H----hcCCHHHH
Q 006071 429 NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESL-F----EDGRVQTA 503 (662)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~~g~~~~a 503 (662)
+-+.|++++-.+.+. - +..-..++-.|.+.+++.+|..+.+++. ...|-......+..+- . .......|
T Consensus 269 ngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 446677776665553 2 2333455666788888888888887764 3334333333333221 1 11224456
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 504 SRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 504 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
...|+..-+.+..- +...-..+..++.-..++++.+.+++.+...-...| ...++.+.+..|++.+|.++|-+....
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 66665543332211 222234455666666789999999998887544444 235778888899999999999766554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhH-HHHHHHHHhcCCcchhHHHHHHhhhhccccchhhh
Q 006071 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSS-DKLIAGLNQEGNTKQADILSRMIRGEMSRGSQKEK 659 (662)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 659 (662)
...+.......++++|.+.|+++-|.+++-++-..+ +.-+. .-+...|.+.+++--|.....+++.++++|+-|+.
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCC
Confidence 434444444578899999999999998876643222 22222 23445589999999998999999999999999999
Q ss_pred hcC
Q 006071 660 KQK 662 (662)
Q Consensus 660 ~~~ 662 (662)
||+
T Consensus 500 KRG 502 (557)
T KOG3785|consen 500 KRG 502 (557)
T ss_pred ccc
Confidence 985
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-11 Score=115.38 Aligned_cols=460 Identities=13% Similarity=0.099 Sum_probs=316.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
..+++...+++.+.+++.. |...++.....-.+...|+-++|........+.++. +..+|..+.-.+....++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 5789999999999999864 777788877777788899999999999888876655 7789999988888889999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
+.|..+...+ +.|...|.-+.-.-.+.|+++........+.+. .+.....|..+..++.-.|+...|..+++...+..
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999876 466777877777777889999988888888775 23345677888888888899999999999988764
Q ss_pred -CCCCHHHHHHHH------HHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006071 192 -ISLDVVTYNTMI------NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (662)
Q Consensus 192 -~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (662)
..|+...+.... ....+.|.++.|.+.+..-... +......-.+-...+.+.+++++|..++..++.. .|
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 245655554332 3456778888888887765543 1112223345567788899999999999999886 57
Q ss_pred CHHHHHHHHHHHH-hCCCHHHHH-HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 265 NAVTYTALLPGLC-DAGKMVEVQ-KVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 265 ~~~~~~~ll~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
|...|...+..+. +..+.-++. .+|....+. .|........-+.......-.+..-.++....+.|+|+- +..
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~d 325 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKD 325 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhh
Confidence 7766665554444 333434444 666655443 221111111111111122223445566677777776653 444
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCC----------CCCCCccccHH--HHHHHHHhcCChhHHHHHHHHHHhcC
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQ----------STLDMEASSYN--PMIQHLCHNGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (662)
+...|-.-...+ ++++++-........ ..-+|+...|+ .++..+-..|+++.|..+++.+..+.
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 444443322222 222222111100011 11245555554 45667788999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-----
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS----- 485 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 485 (662)
|.-+..|..-.+.+...|++++|..++++..+.+ .+|...-.-.+.-..++++.++|.++...+.+.|. +..
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~ 478 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAE 478 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHH
Confidence 8888888888999999999999999999999875 34666555677788899999999999999987764 221
Q ss_pred ---hHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006071 486 ---LFRSV--MESLFEDGRVQTASRVMKSMV 511 (662)
Q Consensus 486 ---~~~~l--~~~~~~~g~~~~a~~~~~~~~ 511 (662)
.|..+ ..+|.+.|++..|++-|..+-
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 22222 246777888877776666543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-12 Score=118.04 Aligned_cols=420 Identities=15% Similarity=0.100 Sum_probs=260.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHH
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV-ISYTTMIKGY 241 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 241 (662)
+.....-|.+.|.+++|++.|...... .|| ...|.....+|...|+|+++.+--....+. .|+- ..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 333445566778888888888888876 456 667777778888888888887777666664 3443 3555566677
Q ss_pred HhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHhcCCh
Q 006071 242 VAVERADDALRIFDEMK-SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 242 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 318 (662)
-..|++++|+.=..-.. -.|+. |..+-..+=+.+ -..+..-.++-...+..|. +..........+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~L-----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--- 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVL-----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--- 264 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHH-----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc---
Confidence 77777776653222111 11111 111111111111 1122222222222111220 222222222222110
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHH----Hc-CCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHH-----
Q 006071 319 NAAADVLKAMIRLSIPTEAGHYGILIENF----CK-AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQ----- 388 (662)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 388 (662)
.......+.......+..++ .. ...+..|...+.+-........... ..|... ..+..
T Consensus 265 ---------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--~~d~~l-e~~A~al~~~ 332 (606)
T KOG0547|consen 265 ---------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--EIDAEL-EYMAEALLLR 332 (606)
T ss_pred ---------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--ccchhH-HHHHHHHHHh
Confidence 00000001111111111111 11 1134444444433322111000000 011111 12222
Q ss_pred --HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChH
Q 006071 389 --HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 389 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (662)
-+.-.|+.-.|..-|+..+...+.+...|-.+..+|....+.++....|....+.+.. ++.+|..-...+.-.++++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 2334589999999999999998766666888889999999999999999999987644 7788888888888889999
Q ss_pred HHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
+|..-|++.++. .|+ ...+..+..+..+.+.+++++..|++..++=+. -++.|+.....+...++++.|++.|+..
T Consensus 412 ~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999864 354 456667777778899999999999999887443 6788999999999999999999999988
Q ss_pred HhCCCCCC-------HHHHH----HHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 546 MQSGSVPN-------FDSLL----SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 546 ~~~~~~p~-------~~~~~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.+ +.|. ...++ -.+.-.+++..|..+++++++.+|..+. .|..|+......|+.++|+++|++...
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~-A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ-AYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 87 3333 11121 1222458999999999999999765544 467899999999999999999999664
Q ss_pred c
Q 006071 615 K 615 (662)
Q Consensus 615 ~ 615 (662)
-
T Consensus 566 l 566 (606)
T KOG0547|consen 566 L 566 (606)
T ss_pred H
Confidence 4
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-10 Score=106.63 Aligned_cols=571 Identities=9% Similarity=0.048 Sum_probs=367.7
Q ss_pred CCHHHHHHHH--HHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 34 KNSEHALQFF--RWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 34 ~~~~~A~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
|+++-=...+ ++..-.+ ..|+...|..+=+++ +.+.-.+.+|++ +|...+.....+|++....
T Consensus 58 ~sykiW~~YL~~R~~~vk~-~~~T~~~~~~vn~c~------er~lv~mHkmpR--------Iwl~Ylq~l~~Q~~iT~tR 122 (835)
T KOG2047|consen 58 GSYKIWYDYLKARRAQVKH-LCPTDPAYESVNNCF------ERCLVFMHKMPR--------IWLDYLQFLIKQGLITRTR 122 (835)
T ss_pred CchHHHHHHHHHHHHHhhc-cCCCChHHHHHHHHH------HHHHHHHhcCCH--------HHHHHHHHHHhcchHHHHH
Confidence 4444333333 4444444 456666666655443 444444445543 7888889999999999999
Q ss_pred HHHHHHHHc-CCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 112 KIFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 112 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
..|+..... .+......|...+......+-++-+..++++.++. ++..-+..+..+++.+++++|.+.+...+..
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 999987653 34445668999999998999999999999999764 3334677788889999999999999888643
Q ss_pred ------CCCCCHHHHHHHHHHHhhcCChH---HHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 191 ------GISLDVVTYNTMINGYNRFKKMD---EAEKLFAEMKEKNIEPTV--ISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 191 ------~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
..+.+-..|..+.+..++.-+.- ....+++.+... -+|. ..|++|..-|++.|.+++|..+|++...
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 23446778888877777654433 344555555543 2343 5799999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHhC----------------C------CHHHHHHHHHHHHHcC----------CCCCcHHHHHH
Q 006071 260 FDVKPNAVTYTALLPGLCDA----------------G------KMVEVQKVLREMVERY----------IPPKDNSVFMK 307 (662)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~----------------g------~~~~a~~~~~~~~~~~----------~~~~~~~~~~~ 307 (662)
. ..+..-|..+.++|+.. | +++-.+.-|+.+...+ -.|.+...|..
T Consensus 277 ~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 277 T--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred h--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 4 23444445555444321 1 1233344444444331 12333333433
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccc
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLSIPTE------AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (662)
-+. ...|+..+-...|.++.+. +.|. ...|..+...|-..|+++.|..+|++...... ..+.-=..
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-----~~v~dLa~ 426 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-----KTVEDLAE 426 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-----cchHHHHH
Confidence 333 3356777778888887764 2221 23577788889999999999999999854321 11111123
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCC------------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGV------------------LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
+|..-...-.+..+++.|..+++++..... .+...|..+++..-..|-++....+++.+.+.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444555567888999998888765441 13346677777777888999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFE---DGRVQTASRVMKSMVEKGVKENL 519 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 519 (662)
.+. ++..-......+-.+.-++++.+++++-+..-..|+ ...|+..+.-+.+ .-..+.|..+|++.++ +..|..
T Consensus 507 ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 507 RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 665 565555556666677778999999988665332344 3456666655443 3468999999999998 454443
Q ss_pred HHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHhc----cCCHHHHHHHHHHHhcCCCCCC-hhhHHH
Q 006071 520 DLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIID-LASYEK 591 (662)
Q Consensus 520 ~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 591 (662)
.-+ -.....--+.|-...|+.++++... +.++. .-.+...|.+ .--....+.+++++++.-+... ......
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence 322 2222223356888899999998765 34443 2233344331 1123345777888888744433 333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHhcCCcc
Q 006071 592 VLDALLAAGKTLNAYSILFKIMEKGGVT-DWKSSDKLIAGLNQEGNTK 638 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 638 (662)
.++.=.+.|..+.|..++....+-.++. +..-|..--.-=.++|+-+
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 6677788999999999999988776553 2222222223345677733
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-16 Score=143.88 Aligned_cols=258 Identities=18% Similarity=0.212 Sum_probs=71.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 006071 273 LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEM 352 (662)
Q Consensus 273 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (662)
...+...|++++|.++++.......+|.+...|..+.......++++.|...++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445555566666666664443332234455555555555555666666666666665543 2233444444444 45556
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCh
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 430 (662)
+++|..+++...+.. ++...+..++..+...++++++..+++.+.... +.++..|..+...+.+.|+.
T Consensus 93 ~~~A~~~~~~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 93 PEEALKLAEKAYERD----------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccc----------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 666665555443211 233344445555555556666665555554433 34555555555555666666
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
++|.+.+++..+..+ .|......++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++|..++++.
T Consensus 163 ~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 666666666555421 134555555555555566655555555555432 233344455555555566666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
.+.++. |+.....++.++...|+.++|.++.+++
T Consensus 241 ~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHSTT--HHHHHHHHHHHT---------------
T ss_pred cccccc-cccccccccccccccccccccccccccc
Confidence 554443 4555555556666666666666555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-12 Score=119.98 Aligned_cols=418 Identities=14% Similarity=0.059 Sum_probs=257.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhh
Q 006071 131 ALFKLILRRGRYMMAKRYFNKMLSEGIEPT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNR 208 (662)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 208 (662)
...+-|.++|++++|++.|.+.+.. .|+ +..|.....+|...|+++++.+-....++. .|+ +..+..-..++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445677888899999999888874 456 677788888888889998888888877775 333 4555666677777
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 209 FKKMDEAEKLFAEMKEK-NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD--VKPNAVTYTALLPGLCDAGKMVEV 285 (662)
Q Consensus 209 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a 285 (662)
.|++++|+.=+.-..-. |+. |..+ ..++.-..+.--...+.+-+ ...+ +-|+.....+....+...-..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~---k~nr~p~lPS~~fi~syf~sF~~~~~~--- 267 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKL---KENRPPVLPSATFIASYFGSFHADPKP--- 267 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhh---cccCCCCCCcHHHHHHHHhhccccccc---
Confidence 78877775432222211 111 1111 11111111100011111111 1111 334544444444333210000
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCC-CC-----CC------hhhHHHHHHHHHcCCc
Q 006071 286 QKVLREMVERYIPPKDNSVFMKLLGVQCK-SGHLNAAADVLKAMIRLS-IP-----TE------AGHYGILIENFCKAEM 352 (662)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~-~~-----~~------~~~~~~l~~~~~~~~~ 352 (662)
.+...+ +..|...-..+-..+.. ...+..|...+.+-.... .. .| ..+...-...+.-.|+
T Consensus 268 -----~~~~~~-~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 268 -----LFDNKS-DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----cccCCC-ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 000000 00000000000000000 012233333322211100 00 01 1111222223345688
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDS 432 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 432 (662)
.-.|...|+..+... + .+...|-.+...|....+.++....|..+.+.+|.++.+|..-.+++.-.+++++
T Consensus 342 ~~~a~~d~~~~I~l~----~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLD----P-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred chhhhhhHHHHHhcC----c-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 888888888886543 1 1222377778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 433 AFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVE 512 (662)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (662)
|..-|++.....+. +...|..+..+..+.++++++...|++..+ .++..+..|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999987533 677888888888899999999999999987 4666678888899999999999999999999987
Q ss_pred cCCC-----CCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 513 KGVK-----ENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 513 ~~~~-----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
..+. .+...+ ..++..- =.+++..|++++++..+ ++|. ..+++....+.|+.++|+++|++++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6333 122222 2222222 23789999999999988 6665 346777777899999999999988765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=143.04 Aligned_cols=258 Identities=13% Similarity=0.139 Sum_probs=59.5
Q ss_pred HHHHHhcCChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC
Q 006071 63 IEILGRVGKLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR 141 (662)
Q Consensus 63 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 141 (662)
...+.+.|++++|.+++....... .+.++..|..+.......++++.|.+.++++...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 444444444444444443322221 122333333344444444444444444444444331 133333334433 34444
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCChHHHHHHHH
Q 006071 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFA 220 (662)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 220 (662)
+++|.+++.+..+.. +++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444433321 233333444444444445554444444443321 12234444444444444555555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 006071 221 EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (662)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 300 (662)
+..+.. |.|....+.++..+...|+.+++.++++...... +.|+..+..+..++...|+.++|..++++.... .|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~ 246 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD 246 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccc
Confidence 444431 1133444444444444454444444444443321 223333444444444555555555555554443 333
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
|+.....++.++...|+.+.|..+..++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4445555555555555555555444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-11 Score=115.93 Aligned_cols=271 Identities=11% Similarity=0.030 Sum_probs=212.6
Q ss_pred CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 006071 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (662)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (662)
..+........+-+...+++.+..++++..++.. ++....+..-+.++...|+..+-..+=.++.+..|..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD---------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 4455666666777888899999999999887654 3455566666778888888888888888888888999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 006071 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (662)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (662)
+.+|-++...|...|+.++|++.|.+....+.. =...|..+.+.|.-.|..++|+..+..+-+. ++-....+.-+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 999999999999999999999999988764322 2367889999999999999999988887753 22222223344456
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----C----CCCCCHHHHHHHHhcc
Q 006071 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-----S----GSVPNFDSLLSVLSEK 564 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~p~~~~~~~~~~~~ 564 (662)
|.+.+..+-|.++|.++....+. ++..++-+.-.....+.+.+|..+|+..+. . ...|.+..++.++.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 78889999999999999877554 666677777777788899999998887762 0 1344466788899999
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
+++++|+..+++++... +.+...|.+++-+|...|+++.|++.|.+.+....
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999999875 44667777899999999999999999999887643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-11 Score=108.37 Aligned_cols=360 Identities=11% Similarity=0.031 Sum_probs=243.4
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--H
Q 006071 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY--T 270 (662)
Q Consensus 193 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 270 (662)
..|...+-.....+.+.|....|+..|...... -+..|.+.+....-..+.+.+.. ... |.+.|...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHH
Confidence 335444444455566778888888888777654 23444444443333333333222 221 112221111 1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHH
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--PTEAGHYGILIENFC 348 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 348 (662)
.+..++......+++.+-.......|++. +...-+..+.+.....|+++|+.+|+++.+... -.|..+|+.++- .
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~-~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPN-SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 23345555667777877777777776544 677777777777788888888888888887631 124566666553 3
Q ss_pred cCCcHH---HHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 349 KAEMYD---RAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 349 ~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+..+.. -|..++.- . +--+.|+..+.+-|+-.++.++|...|++..+.+|....+|+.++.-|.
T Consensus 309 ~~~~skLs~LA~~v~~i-----------d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNI-----------D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV 375 (559)
T ss_pred HhhhHHHHHHHHHHHHh-----------c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH
Confidence 322211 12222211 1 1233467777888888888999999999999988888888999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (662)
...+...|.+.++.+.+.++ .|-..|-.|..+|.-.+.+.-|+-.|++..+. .+-|...|..+...|.+.++.++|++
T Consensus 376 EmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999998888653 37888889999999889999999999988863 23467788888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----CC-CCCCHH----HHHHHHhccCCHHHHHHHHHH
Q 006071 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ----SG-SVPNFD----SLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~----~~~~~~~~~g~~~~A~~~~~~ 576 (662)
.|+.+...|-. +...+..++..|-+.++..+|.+.+++.++ .| ..|... .+..-+.+.+++++|..+...
T Consensus 454 Cykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 454 CYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99988887655 566777788889999999999888887665 12 333221 133334468888998888876
Q ss_pred HhcC
Q 006071 577 CLGR 580 (662)
Q Consensus 577 ~~~~ 580 (662)
+..-
T Consensus 533 ~~~~ 536 (559)
T KOG1155|consen 533 VLKG 536 (559)
T ss_pred HhcC
Confidence 6664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-12 Score=127.36 Aligned_cols=285 Identities=11% Similarity=0.107 Sum_probs=212.7
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHH--HHHHHHHHcCChhH
Q 006071 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVL-IESYGKKGIVQESVKIFDIMKQLGVERSVKSYD--ALFKLILRRGRYMM 144 (662)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~ 144 (662)
..|+++.|.+.+....+... ++..+..+ ..+..+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 46899999888887665422 23333333 44447889999999999888774 35443222 33567788899999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCChHHHHH
Q 006071 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEK 217 (662)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~ 217 (662)
|...++++.+.+ +-++..+..+...|...|++++|..++..+.+.+..++. ..|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999988764 336677788888888889999999999998887654222 233444554555566677777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006071 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (662)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 297 (662)
+++.+... .+.+......+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+.++...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--
Confidence 77776543 3457778888899999999999999999888774 5555322 233444568999999999988876
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHh
Q 006071 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (662)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (662)
.|+|+.....+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++.+..
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778888999999999999999999999999875 688888888999999999999999999887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-12 Score=128.58 Aligned_cols=294 Identities=11% Similarity=0.051 Sum_probs=191.2
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHH
Q 006071 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146 (662)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 146 (662)
...|+++.|.+.+.+..+.... +...+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4667888888888777665322 223334445666777888888888887765431222223333466777788888888
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hhcCChHHHHHHHHHH
Q 006071 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYN-TMINGY---NRFKKMDEAEKLFAEM 222 (662)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~ 222 (662)
..++.+.+.. +-+...+..+...+...|+++++...+..+.+.+.. +...+. .-..++ ...+..+...+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887764 235566777777778888888888888888877544 322221 111111 2222223233344443
Q ss_pred HHCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 006071 223 KEKN---IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT---YTALLPGLCDAGKMVEVQKVLREMVERY 296 (662)
Q Consensus 223 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 296 (662)
.... .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 3321 1136777778888888888888888888888765 344332 111222223457778888888887775
Q ss_pred CCCCcH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 297 IPPKDN--SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 297 ~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.|.|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..-
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67677 77788888899999999999999854333346788778888999999999999999998876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-12 Score=124.56 Aligned_cols=287 Identities=9% Similarity=0.044 Sum_probs=223.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhH
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRET-HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQE 109 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 109 (662)
...|+++.|.+......+.. +++.. +.....+..+.|+++.|.+.++++.+................+...|+++.
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 34699999998888876643 23444 444456668999999999999999875433222222244678889999999
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHhcCCHHHHHH
Q 006071 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR-------HTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 110 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 182 (662)
|...++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999876 567888999999999999999999999999887554222 123333444444556677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (662)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+... .++.+.+..++.+++++..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence 77777654 3457888899999999999999999999998874 455422 23444456699999999999988763
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
+-|...+..+...+...+++++|.+.|+.+.+. .| +...+..+...+.+.|+.++|..++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667889999999999999999999999985 57 777888999999999999999999998755
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-10 Score=105.76 Aligned_cols=383 Identities=9% Similarity=-0.007 Sum_probs=229.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CcHHHHHH
Q 006071 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPP-KDNSVFMK 307 (662)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~ 307 (662)
.|...+....-.+.+.|....|...|...... .+..-..|..+...+ .+.+.+ ...... ... .....-.-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHHH
Confidence 34444444455556677777777777776643 133333444443322 222222 222211 111 01111222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHH
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 387 (662)
+..++......+++..-.......|++.+...-+....+.-...+++.|+.+|+++...+ | -.-.|..+|+.++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD----P--YRl~dmdlySN~L 306 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND----P--YRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC----C--CcchhHHHHhHHH
Confidence 334455555667777777777777766666666666666667777888888888775432 1 0112344555544
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHH
Q 006071 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPAD 467 (662)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (662)
-. +..+ .+..-+-+.....+...+.|...+...|+-.++.++|...|+...+.+.. ....|+.+.+-|....+...
T Consensus 307 Yv--~~~~-skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 307 YV--KNDK-SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HH--Hhhh-HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 32 2211 11112222233334556677777777777777888888888887776533 55677777777888888888
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|++.++.+++-. +-|...|..+..+|...+.+.-|+-+|+++....+. |...|.+|+.+|.+.++.++|++-|++...
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 888888777633 346677778888888888888888888877776554 677778888888888888888888877776
Q ss_pred CCCCCC--HHHHHHHHhccCCHHHHHHHHHHHhcCC-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 548 SGSVPN--FDSLLSVLSEKGKTIAAVKLLDFCLGRD-----CII-DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 548 ~~~~p~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
.+.... ...++.++.+.++.++|.+++++.++.. ..+ .......|+.-+.+.+++++|-.+..+...- .+
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~ 538 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET 538 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc
Confidence 444422 3456677777778888888777766521 111 1222223666667778888887766665544 33
Q ss_pred cHhhHHHHHHHHHhc
Q 006071 620 DWKSSDKLIAGLNQE 634 (662)
Q Consensus 620 ~~~~~~~l~~~~~~~ 634 (662)
.-.....|++.+++.
T Consensus 539 e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 ECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHh
Confidence 444445566666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-11 Score=105.90 Aligned_cols=453 Identities=11% Similarity=0.081 Sum_probs=289.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDR-ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+.-+...+++..|+.+++.....+ .... .+-.=+..++...|++++|...+..+...+ .++...+..+...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 445667889999999998876544 2222 222335566789999999999999887743 457778888888888889
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
.+.+|..+-.... .++-.-..++..-.+.++-++-..+.+.+... ...--++.......-.+.+|++++.
T Consensus 106 ~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999998877664 34444555566666778777766666665321 1222234444444567889999999
Q ss_pred HHHhCCCCCCHHHHHHH-HHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006071 186 DMKSRGISLDVVTYNTM-INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (662)
.+... .|+-...|.. .-+|.+..-++-+.++++-..+. ++.++.+.|..+....+.=+-..|..-.+++...+-..
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 98876 3444444443 44677888888888888887765 44455666665555544433334444444444432111
Q ss_pred CHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 006071 265 NAVTYTALLPGLCD-----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH 339 (662)
Q Consensus 265 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (662)
|-. +.-+++ ..+-+.|.+++--+.+. -+.+...++-.|.+.++..+|..+.+++. |.++.-
T Consensus 253 ----~~f-~~~l~rHNLVvFrngEgALqVLP~L~~~-----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~E 318 (557)
T KOG3785|consen 253 ----YPF-IEYLCRHNLVVFRNGEGALQVLPSLMKH-----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYE 318 (557)
T ss_pred ----chh-HHHHHHcCeEEEeCCccHHHhchHHHhh-----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHH
Confidence 111 111122 23446788887776663 23455566777889999999999888764 333333
Q ss_pred HHHHHHHHHcCCc-------HHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006071 340 YGILIENFCKAEM-------YDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 340 ~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (662)
|-.-.-.+...|+ ..-|.+.|.-. ..+...-|. ..-.++..++.-..++++.+..+..+..-..
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlV--------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLV--------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh--------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3222222333332 44455555444 333333332 2344566666667788999988888887775
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHH-H
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY-ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR-S 489 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 489 (662)
.|...-..+.++++..|++.+|.++|-.+....++ |..+| ..+.++|.+++.++.|..++-++ +-+.+..++. .
T Consensus 391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLql 466 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQL 466 (557)
T ss_pred CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHH
Confidence 55555556889999999999999999888765555 55555 55678899999999987766554 3333333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006071 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (662)
+...|.+.+.+--|.+.|+.+... +|+++.|.
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 345688889888888888887655 44556664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-12 Score=127.21 Aligned_cols=294 Identities=9% Similarity=0.004 Sum_probs=221.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
+....|+++.|.+.+....+.. +.+...+....++....|+++.|.+.+.+..+..+.+...+.......+...|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 4447899999999999987765 34455566677889999999999999999876543333345555688888999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHH-HHHHHH---HhcCCHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN-VMLWGF---FLSLKLETAIRFF 184 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~ 184 (662)
.|...++.+.+.. |.++..+..+...+.+.|++++|.+.+..+.+.++. +...+. ....++ ...+..+.....+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999875 557788999999999999999999999999988654 333332 222222 3333444445567
Q ss_pred HHHHhCCCC---CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 185 EDMKSRGIS---LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS---YTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 185 ~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
..+...... .+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 766665321 378889999999999999999999999999863 44332 1222223344578888999998887
Q ss_pred hCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 259 SFDVKPNA--VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 259 ~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
+.. +-|+ ....++...+.+.|++++|.+.|+........| +...+..+...+.+.|+.++|.+++++...
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 652 3344 556688899999999999999999544433467 667788999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-11 Score=113.25 Aligned_cols=277 Identities=13% Similarity=0.042 Sum_probs=184.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
.-+......-..-+...+++.+..++.+.+.+. .|.....+..-+.++...|+...-..+-..+.+. .|..+.+|-.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 344455555556666777777777777777764 4445555555566777777766666666666654 3556667777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
+.--|...|...+|.+.|.+....+ + . -...|-...+.|+-.+..+.|...+..+.+.-+.....+--+..
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD----~--~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD----P--T---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC----c--c---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 7777777777777777777764322 1 1 12357777777777777777777777776655433333444455
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCC-cHHhHHHHHHHHHh
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED----G-HSP-ASSLFRSVMESLFE 496 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~ 496 (662)
-|.+.++.+.|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+..... + -.+ -..+++.+..+|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 5667777777877777776652 336666666666666677777777777776521 0 011 23457777778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
.+.+++|+..++..+...++ +..++..++..|...|+++.|++.|.+.+. +.|+..
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 88888888888888877555 777788888888888888888888887775 667643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-13 Score=128.72 Aligned_cols=284 Identities=15% Similarity=0.147 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGV--QWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
+..+|+..|+...... ..+..+...+.++|...+++++|..+|+.+.+..+ -.+..+|...+..+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 7789999999966554 56668889999999999999999999999887653 23678888888765432 1222
Q ss_pred HH-HHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 113 IF-DIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 113 ~~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.+ +.+.+.. +..+.+|.++.++|.-+++++.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 2333322 467889999999999999999999999999875 34 6778888888888889999999999998875
Q ss_pred CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006071 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (662)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (662)
... +-..|-.+...|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|+.++|+.+++++.... +-|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 221 33445556778999999999999999998865 4466777788888899999999999999998764 44566655
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 332 (662)
.....+...+++++|...++++.+. .|.+..++..+...|.+.|..+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6667778889999999999999884 78788999999999999999999999998887764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-11 Score=120.09 Aligned_cols=548 Identities=15% Similarity=0.109 Sum_probs=306.2
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006071 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV 122 (662)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 122 (662)
+..+...| ..|+..+|..++.-|+..|+.+.|- +|.-|.-++.+.+...|+.++.+....++.+.+.
T Consensus 13 la~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 13 LALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 33444445 6788899999999999999998888 8888887777778888999998888888887776
Q ss_pred CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHH
Q 006071 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK-SRGISLDVVTYNT 201 (662)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 201 (662)
.|...+|..|..+|.+.||... |+...+ ....+...+...|.-.....++..+. ..+.-||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4788889999999999988665 222221 11222333444444444444443322 1223344432
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER-ADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAG 280 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 280 (662)
.+......|-++.+.+++..+...... . ++..+++-+..... +++-....+...+ .|++.+|..++.+....|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 233344456677777777665432100 1 11112333333322 3333333333332 588999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 006071 281 KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360 (662)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 360 (662)
+.+.|..++.+|.+.|++. +...|..++-+ .++...+..++.-|...|+.|+..|+...+..+..+|+...+
T Consensus 219 ~~d~Ak~ll~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~---- 290 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG---- 290 (1088)
T ss_pred chhhHHHHHHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc----
Confidence 9999999999999998876 55555555443 788888888889999999999999998887777775552211
Q ss_pred HHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHH------------HHHHhcC-CCCHHHHHHHHHHHHhc
Q 006071 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFF------------RQLMKKG-VLDPVAFNNLIRGHSKE 427 (662)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~~~~-~~~~~~~~~l~~~~~~~ 427 (662)
+.+ .+....+++-+.+-+-.| ..|...+ .+..-.+ ...+.+| ++..-...+
T Consensus 291 ------------~e~-sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQ 354 (1088)
T KOG4318|consen 291 ------------EEG-SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQ 354 (1088)
T ss_pred ------------ccc-cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHc
Confidence 111 122223333333222233 2222222 2222222 1112223 233333346
Q ss_pred CChhHHHHHHHHHhhC--CCC-CCHHhHHHHHHHHHhcCChHHHHHHH--HHHHHcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006071 428 GNPDSAFEIVKIMGRR--GVP-RDADAYICLIESYLRKGEPADAKTAL--DSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (662)
Q Consensus 428 ~~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (662)
|.-+...++...+..- ... -++..|..++.-|.+.-+..-...++ .+.++.. .+....-.+.....+. +...
T Consensus 355 gk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns 431 (1088)
T KOG4318|consen 355 GKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNS 431 (1088)
T ss_pred CCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-Ccch
Confidence 7777777777776542 111 13445555555554432111111111 1111110 0000000111111100 1111
Q ss_pred HHHHHHHHH----HcCCCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHH
Q 006071 503 ASRVMKSMV----EKGVKE-------NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAV 571 (662)
Q Consensus 503 a~~~~~~~~----~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~ 571 (662)
+.+-+.... .+...| -...-+.++..+++.-+..+++..-++....-+.--+..++..+....+.+.|.
T Consensus 432 ~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al 511 (1088)
T KOG4318|consen 432 FLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYAL 511 (1088)
T ss_pred HHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHH
Confidence 111111111 111111 122234455566666666666655444433212222456777778888888888
Q ss_pred HHHHHHhcCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 572 KLLDFCLGRD--CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 572 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
...++....+ ...+...+..+.+.+.+.+...++.++++.+.+.....+ ..+..+++......|+.+.-.++.+.+
T Consensus 512 ~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 512 SFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 8888655442 223455677889999999999999999999887433322 445566777778888887777777766
Q ss_pred hhhc
Q 006071 648 RGEM 651 (662)
Q Consensus 648 ~~~~ 651 (662)
...+
T Consensus 592 vslg 595 (1088)
T KOG4318|consen 592 VSLG 595 (1088)
T ss_pred HHhh
Confidence 5443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-13 Score=128.98 Aligned_cols=286 Identities=13% Similarity=0.057 Sum_probs=218.0
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCCh
Q 006071 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (662)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (662)
...+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. .-..-+...|.+.+..+-+ .
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~------p~rv~~meiyST~LWHLq~---~ 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE------PYRVKGMEIYSTTLWHLQD---E 403 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhHHHHHHHHHHh---h
Confidence 456788888885554 34445677778888999999999999998886543 1222356677777765432 2
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
-+---+-+.+....+..|.+|.++..+|+-+++.+.|++.|++..+.+.. ...+|+.+..=+.....+|.|...|+..+
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22223445566666889999999999999999999999999999886422 67889999998999999999999999987
Q ss_pred HcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-
Q 006071 477 EDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF- 554 (662)
Q Consensus 477 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 554 (662)
. +.|. ...|..+.-.|.+.++++.|.-.|+++++.++. +......+...+.+.|+.++|++++++......+...
T Consensus 483 ~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 483 G--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred c--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 4 3343 456777788899999999999999999988777 6777788888999999999999999998873322222
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 555 -DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 555 -~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
..-+..+...+++++|++.+++.-+..|+ +..++..++..|-+.|+.+.|+.-|-=+.+..+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 23566777889999999999977766543 345566899999999999999998888776544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-12 Score=109.83 Aligned_cols=291 Identities=18% Similarity=0.215 Sum_probs=201.2
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC
Q 006071 316 GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ 395 (662)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (662)
.+.++|.+.|-+|.+.. +.+..+..+|...|.+.|..+.|+.+...+.++ |+....--....-.+..-|...|-
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-----pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-----PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHHHHHHhhh
Confidence 44555666666655532 333444455566666666666666666655432 111111111123345556777888
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHhcCChHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA----DAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
++.|+.+|..+.+.+..-..+...|+..|-...+|++|+++-+++.+.+..+.. ..|--+...+....+.+.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 889999998888877777788888999999999999999999988886544432 3455666677777889999999
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 006071 472 LDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551 (662)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (662)
+++..+.+. .....-..+.+.....|+++.|++.++.+.+.++.--..+...+..+|.+.|++++.+..+.++.+....
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 999987542 2233444566778889999999999999999988777788889999999999999999999999886666
Q ss_pred CCHHHHHHHH-hccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 006071 552 PNFDSLLSVL-SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA---AGKTLNAYSILFKIMEK 615 (662)
Q Consensus 552 p~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 615 (662)
++...++.-+ ....-.+.|..++.+-+.. .|+...++.+++.-.. .|+..+-+..+++|+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6654433333 3344556677777767766 4555555556665553 46677778888887754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-09 Score=100.24 Aligned_cols=441 Identities=14% Similarity=0.133 Sum_probs=295.6
Q ss_pred HHHhhcCCCCChHHHHH-HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC
Q 006071 12 NKIRALVPQFDHNLVYN-VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD 90 (662)
Q Consensus 12 ~~~~~~~~~~~~~~l~~-~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 90 (662)
+-+...+.+.....+.. .|...|+-++|.+..+..++.+ +.+...|..+.-.+....++++|+.+|....+.+.. |
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N 108 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-N 108 (700)
T ss_pred HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-c
Confidence 33444555555544444 6678899999999999999987 789999999999999999999999999999988765 8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCcCHHHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG-IEPTRHTYNVMLW 169 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~ 169 (662)
..++.-+.-.-++.|+++........+.+.. +.....|..+..+..-.|++..|..+.+...+.- ..|+...|.....
T Consensus 109 ~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 109 LQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 8899888877788899999888888877753 3455678888888889999999999999987653 2466665544332
Q ss_pred ------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-
Q 006071 170 ------GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV- 242 (662)
Q Consensus 170 ------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 242 (662)
...+.|.++.|.+.+...... +......-..-...+.+.+++++|..++..+... .||...|...+..+.
T Consensus 188 ~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHH
Confidence 344678888888887665543 2212233345567788999999999999999987 367766665554444
Q ss_pred hcCCHHHHH-HHHHHHhhCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHH
Q 006071 243 AVERADDAL-RIFDEMKSFDVKPNAVTYTA-LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (662)
Q Consensus 243 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (662)
+..+.-+++ .+|....+. .|....-.. -+.......-.+..-.++....+.|+++ ++..+...|-.....+-
T Consensus 265 k~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~----vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS----VFKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc----hhhhhHHHHhchhHhHH
Confidence 344444444 566665442 222111111 1111112223344556666677776544 44444444432221111
Q ss_pred HHHHH----HHHHhCC----------CCCChhhH--HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc-cccH
Q 006071 321 AADVL----KAMIRLS----------IPTEAGHY--GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME-ASSY 383 (662)
Q Consensus 321 a~~~~----~~~~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 383 (662)
..++. ..+...| -+|....| -.++..|-..|+++.|...++..++.. |+ ...|
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT----------PTliEly 408 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT----------PTLIELY 408 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC----------chHHHHH
Confidence 11111 1111111 14454444 446778889999999999999985432 22 2234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH--------hHHH-
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD--------AYIC- 454 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~- 454 (662)
..-...+...|..+.|..+++...+.+.+|...-..-+....+.++.++|.++.....+.|. +.. .|-.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhH
Confidence 44447788999999999999999999887777666777788889999999999998887664 221 1211
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHH
Q 006071 455 -LIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 455 -l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
-..+|.+.|++..|++-|..+.+
T Consensus 487 E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHH
Confidence 24567788888888776665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-12 Score=108.90 Aligned_cols=294 Identities=16% Similarity=0.164 Sum_probs=193.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChHHH
Q 006071 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD--NSVFMKLLGVQCKSGHLNAA 321 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 321 (662)
.++.++|.+.|-+|.+.. +.+..+-.++.+.+.+.|..+.|+.+.+.+..+.--+.+ ..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345566666666666532 223334445556666667777777766666664211111 12345566667777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHH
Q 006071 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (662)
..+|..+.+.+ ..-......|+..|....+|++|+++-+++...+ ++....--...|.-+...+....+.+.|..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~----~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG----GQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC----CccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 77777776643 2334456667777888888888888877775443 111100111234455555666788889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006071 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS 481 (662)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 481 (662)
++.+..+.++....+-..+.+.+...|+++.|.+.++...+.+...-..+...|..+|.+.|++++...++..+.+....
T Consensus 202 ~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 202 LLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99999998888888888888999999999999999999988876656678888999999999999999999998875433
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHh
Q 006071 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQ 547 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 547 (662)
++ ....+........-.+.|..++.+-+.+ +|+...+..++..-.. .|...+-+.+++.|+.
T Consensus 282 ~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 AD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33 3333434333444456666666665554 5677777777775543 3456666777777765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-11 Score=117.29 Aligned_cols=240 Identities=13% Similarity=0.160 Sum_probs=163.6
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
.+++..++.-+...|+.+.|- +|..|.-++ .|.+...++.++......++.+.+. .|.+.+|+.+..
T Consensus 25 RvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 25 RVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLK 91 (1088)
T ss_pred hhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHH
Confidence 356788888899999999988 999997776 6788889999998888888877665 468889999999
Q ss_pred HHHhcCChhH---HHHHHHHHH----HcCCCcCHHhH--------------HHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 006071 100 SYGKKGIVQE---SVKIFDIMK----QLGVERSVKSY--------------DALFKLILRRGRYMMAKRYFNKMLSEGIE 158 (662)
Q Consensus 100 ~~~~~g~~~~---A~~~~~~~~----~~g~~~~~~~~--------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 158 (662)
+|...||... ..+.+.... ..|+.....-+ ...+....-.|-++.+++++..+......
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 9999999754 333222221 12221111111 11222233345555555555544322111
Q ss_pred cCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 159 PTRHTYNVMLWGFFLSL-KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 159 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
.+..+ +++-+.... .+++-..+...... .|+..+|..++++....|+.+.|..++.+|.+.|++.+..-|-.|
T Consensus 172 -~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 172 -APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred -chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 11111 244333222 23333333333332 589999999999999999999999999999999998887766666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 006071 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (662)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 281 (662)
+-+ .++...+..+++.|...|+.|+..|+...+-.+...|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 655 78888889999999999999999999888877777554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-11 Score=107.58 Aligned_cols=290 Identities=14% Similarity=0.101 Sum_probs=165.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIF 254 (662)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 254 (662)
|++..|++...+..+.+.. ....|..-.++.-..|+.+.+-..+.+..+..-.++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555444444322 223333334444444555555555555444321233334444444444555555555544
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 255 DEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN-------SVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
.++...+ +-++.......++|.+.|++.....++..+.+.+.-. ++ .++..+++-....+..+.-...++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 4444432 2334444444555555555555555555555544332 21 2334444444444444444444444
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
..+. ...++..-..++.-+..+|+.++|.++.++.+++.. .|+ -...-.+.+.++...-++..+...
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--------D~~----L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--------DPR----LCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--------Chh----HHHHHhhcCCCCchHHHHHHHHHH
Confidence 4332 234455566667777777777777777777755431 122 112223445677777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
+..+.++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|++.+|.++.++....-.+|
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 777778888888888888888888888888877764 5788888888888888888888888888776443333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-11 Score=109.90 Aligned_cols=292 Identities=14% Similarity=0.177 Sum_probs=157.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 006071 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV 324 (662)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 324 (662)
|++..|.+...+-.+.+- -....|..-..+.-+.|+.+.+-.++.++.+...++ +..............|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCchhHHHH
Confidence 444444444444443331 122233333444444455555555544444431122 233333444444445555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHH
Q 006071 325 LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFR 404 (662)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 404 (662)
.+++...+ +..+.......++|.+.|++.....++..+.+.+....+ .-......+|..+++-....+..+.-...++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-EAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH-HHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 54444443 333444444555555555555555555554332211000 0000011245555555555555555555666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006071 405 QLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS 484 (662)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 484 (662)
.....-..++..-.+++.-+...|+.++|.++..+..+++..|+ -...-.+.+-++++.-++..+.-.+. .+.++
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 65555566677777777777788888888888777777665555 11222344556666666666665542 22334
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..+.++...|.+.+.|.+|...|+..++. .|+...|+.+..++.+.|++.+|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66777777777888888888888766543 55677777777888888888777777776554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-10 Score=111.36 Aligned_cols=566 Identities=12% Similarity=-0.000 Sum_probs=314.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
..+...|+..|=+.++.+ +.-..+|..+...|...-+...|.+.|+..-..+.. +...+......|+...+++.|..
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHH
Confidence 345777777777777766 556678888888888877888888888887776543 66778888888888888888888
Q ss_pred HHHHHHHcC-CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 113 IFDIMKQLG-VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 113 ~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
+.-...+.. ...-...|....-.|.+.++...|+.-|+...+.. +.|...|..+..+|..+|++..|.++|.++...+
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 843333211 00111234444455667788888888888887764 3377788888888888888888888888877652
Q ss_pred CCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-------Hh
Q 006071 192 ISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN------IEPTVISYTTMIKGYVAVERADDALRIFDE-------MK 258 (662)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~ 258 (662)
+. +...---....-+..|.+.++...+..+...- ...-..++-.+...+.-.|-..++..+++. ..
T Consensus 627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 21 22221122233456788888888777765320 001112222222233333332333333322 22
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHH------HHHHHH-HHHHHcCCCCC-------------------cHHHHHHHHHHH
Q 006071 259 SFDVKPNAVTYTALLPGLCDAGKMV------EVQKVL-REMVERYIPPK-------------------DNSVFMKLLGVQ 312 (662)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~-~~~~~~~~~~~-------------------~~~~~~~l~~~~ 312 (662)
......+...|..+-.+|.-.-..+ ....++ .+....+.-|+ +...|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2211222222322222221000000 000000 00111111111 122333333333
Q ss_pred Hh----c----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH
Q 006071 313 CK----S----GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (662)
Q Consensus 313 ~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (662)
.+ . .+...|+..+...++.. ..+..+|+.|.-. ...|.+.-+...|-+... ..+....+|.
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---------sep~~~~~W~ 854 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---------SEPTCHCQWL 854 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh---------ccccchhhee
Confidence 22 1 11234555555555432 3344555554433 444666666665554322 1223445666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh----hCCCCCCHHhHHHHHHHHH
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG----RRGVPRDADAYICLIESYL 460 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 460 (662)
.+.-.+....+++-|...|.......|.+...|..........|+.-++..+|..-. ..|-.++..-|-+......
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 666667777888888888888888878787777777666677777777777776622 2333445555555555556
Q ss_pred hcCChHHHHHHHHHH----------HHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HH
Q 006071 461 RKGEPADAKTALDSM----------IEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVA----KI 525 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~l 525 (662)
.+|+.++-+...+++ .. +.+.+...|........+.+.+..|.....+++.. ..+.+...|+ .+
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 666665544333332 22 33444566666666667777777777777665432 1111222233 45
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHhccCCHHHHHHHHHHHhcCCCCCCh--hhHHHHHHHHHhcCC
Q 006071 526 LEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLS--VLSEKGKTIAAVKLLDFCLGRDCIIDL--ASYEKVLDALLAAGK 601 (662)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 601 (662)
.+.++..|.++.|...+..... ..+-..... .+.-.|+++++...|++++........ .....++......|.
T Consensus 1014 gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 5566677777766654432211 111111111 223468899999999988876433332 333456677778888
Q ss_pred HHHHHHHHHHHHHcCCC
Q 006071 602 TLNAYSILFKIMEKGGV 618 (662)
Q Consensus 602 ~~~A~~~~~~~~~~~~~ 618 (662)
.+.|...+-+......+
T Consensus 1091 k~~A~~lLfe~~~ls~~ 1107 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSLSKV 1107 (1238)
T ss_pred chHHHHHHHHHHHhCcc
Confidence 99998888887776543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-09 Score=97.10 Aligned_cols=292 Identities=14% Similarity=0.090 Sum_probs=217.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHH
Q 006071 277 CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRA 356 (662)
Q Consensus 277 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 356 (662)
+..++...+...+--+......|.|......+..++...|+.++|...|+.....+ +.+........-.+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 44555555555555555555567789999999999999999999999999887643 22333333344455677888888
Q ss_pred HHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 357 IKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEI 436 (662)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 436 (662)
..+...++.... .+...|-.-....-..+++..|+.+-++.++..+.+...+-.-...+...+++++|.-.
T Consensus 286 ~~L~~~Lf~~~~---------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 286 SALMDYLFAKVK---------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HHHHHHHHhhhh---------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 888777754321 12223433344445678899999999999999988888998888999999999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcC
Q 006071 437 VKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM-ESLF-EDGRVQTASRVMKSMVEKG 514 (662)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~ 514 (662)
|+...... +.+...|..|+.+|...|++.+|...-....+ -++.+..++..+. ..|. ...--++|.++++..+...
T Consensus 357 FR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~-~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 357 FRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR-LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH-HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 99988763 34789999999999999999999888877665 2445566665553 3332 2334578999999888765
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Q 006071 515 VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (662)
+. -......+...+...|..++++.++++-+. ..|| ...+++.+...+.+.+|.+.|..++..+|.
T Consensus 435 P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 435 PI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred Cc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 54 244567788889999999999999998887 5555 345888889999999999999999988754
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-09 Score=102.67 Aligned_cols=435 Identities=13% Similarity=0.060 Sum_probs=254.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHH
Q 006071 87 VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYN 165 (662)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 165 (662)
++.++.+|..+.-+....|+++.+.+.|++.... .-.....|..+...+...|....|..+++.-......| +...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4557777777777777888888888888877542 12344567777777777788778888877765443223 333333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHhhc-----------CChHHHHHHHHHHHHCCCCC
Q 006071 166 VMLWGFF-LSLKLETAIRFFEDMKSR--GI--SLDVVTYNTMINGYNRF-----------KKMDEAEKLFAEMKEKNIEP 229 (662)
Q Consensus 166 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 229 (662)
..-..|. +.+.+++++.+..++... +. ......|..+.-+|... -...++.+.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333343 346666666666665541 10 11223333333333221 11245666777766554 22
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
|+.....+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... .|.|......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 344444455556677778888888888777654567777777777777788888888888777664 232333333333
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHH---
Q 006071 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM--- 386 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--- 386 (662)
..-...++.+++......+... |...- .....++-....+....+.-. +. ...-...++..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la-----~~-q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLA-----LS-QPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccC-----cc-cccccchhhHHHHHH
Confidence 3333456666665555444331 00000 000000000111111111000 00 001111222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLD------PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
+..-...-..+.. +........++ ...|......+.+.++.++|...+.+..... +.....|......+.
T Consensus 620 ~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHH
Confidence 2211111111111 22211111111 3456677778888888899888888777652 446677777778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 006071 461 RKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASR--VMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (662)
..|++++|.+.|..... +.|+ .....++...+.+.|+..-|.. ++..+.+.++. +...|..++..+...|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHH
Confidence 88999999999998875 3455 5567788888888898777777 89999888877 78889999999999999999
Q ss_pred HHHHHHHHHh
Q 006071 538 ALGRIDLMMQ 547 (662)
Q Consensus 538 A~~~~~~~~~ 547 (662)
|.+.|....+
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 9999988776
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-09 Score=102.38 Aligned_cols=435 Identities=13% Similarity=0.068 Sum_probs=257.3
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HhhHH
Q 006071 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISYT 235 (662)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 235 (662)
+.-+...|..+.-+....|+++.+.+.|++....-+ .....|..+...|...|.-..|..+++.-......|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 445777788888888888999999999998876533 3677888888888889998889988888665432233 33333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHhh--CCC--CCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHcCCCC
Q 006071 236 TMIKGYV-AVERADDALRIFDEMKS--FDV--KPNAVTYTALLPGLCDA-----------GKMVEVQKVLREMVERYIPP 299 (662)
Q Consensus 236 ~l~~~~~-~~~~~~~a~~~~~~~~~--~~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 299 (662)
..-..|. +.+..++++.+-.++.. .+. ...+..|..+.-+|... ....++.+.+++.++. .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--d~ 475 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--DP 475 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--CC
Confidence 3334443 34666777776666654 110 12233444444444321 1235577777777774 56
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME 379 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 379 (662)
.|+.+...+.--|+..++.+.|.+...+....+-..+...|..+.-.+...+++..|+.+.+..++... . |
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~----~-----N 546 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG----D-----N 546 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh----h-----h
Confidence 677777777788888899999999999998886677888888888888889999999999988876541 1 1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHhHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLIE 457 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 457 (662)
......-++.-...++.+++......+...-..-..+ ...++-....+....+.-. ...-...++..+..
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 1111111222223466666665555444321000000 0011111112222211110 11111223332222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC--c------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 458 SYLRKGEPADAKTALDSMIEDGHSP--A------SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
.....+ +.+..-.. +......| + ...|......+.+.+..++|...+.++....+. ....|...+..+
T Consensus 619 l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 619 LVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLL 694 (799)
T ss_pred HHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHH
Confidence 221111 11100000 11111111 1 123444555667777778887777777655332 455566666777
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHH--HHHHHhcCCCCCChhhHHHHHHHHHhcCCHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK--LLDFCLGRDCIIDLASYEKVLDALLAAGKTL 603 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 603 (662)
...|.+.+|.+.|...+. +.|+ ...++..+.+.|+..-|.. ++..+++.++ .++..|..++..+.+.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence 778888888888877765 4444 3456666667776666655 7777888763 34555667888888888888
Q ss_pred HHHHHHHHHHHcCCC
Q 006071 604 NAYSILFKIMEKGGV 618 (662)
Q Consensus 604 ~A~~~~~~~~~~~~~ 618 (662)
+|.+.|.-......+
T Consensus 772 ~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 772 QAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHhhccC
Confidence 888888887765443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-09 Score=99.88 Aligned_cols=458 Identities=15% Similarity=0.146 Sum_probs=230.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (662)
.+.+.|++++|.+...++...+ +.+...+..-+-+..+.+.+++|+.+.+.-... ..+..-+..-+.+..+.+..++
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHH
Confidence 3445555666666665555543 224444445555555556666655443332110 0000000111222335566666
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 250 ALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI 329 (662)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 329 (662)
|+..++... +.+..+...-...+.+.|++++|..+|+.+.+.+.+..+......++.+-... .+. +.+..
T Consensus 98 alk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~q~v- 167 (652)
T KOG2376|consen 98 ALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LLQSV- 167 (652)
T ss_pred HHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HHHhc-
Confidence 666555221 11222444445555666666666666666665543322222222222211110 000 11111
Q ss_pred hCCCCCChhhHHHH---HHHHHcCCcHHHHHHHHHHHHHhhhhccC--CCC---CCCccc-cHHHHHHHHHhcCChhHHH
Q 006071 330 RLSIPTEAGHYGIL---IENFCKAEMYDRAIKLLDKLVEKEIILRP--QST---LDMEAS-SYNPMIQHLCHNGQTGKAE 400 (662)
Q Consensus 330 ~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~---~~~~~~-~~~~l~~~~~~~~~~~~a~ 400 (662)
...| ..+|..+ ...+...|++.+|+++++.........-. +.+ +..... .-.-+.-++...|+..+|.
T Consensus 168 --~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 168 --PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred --cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111 2223222 23445567777777777666332211000 000 000000 1122334556789999999
Q ss_pred HHHHHHHhcCCCCHHH----HHHHHHHHHhcCChh-HHHHHHHHHhhCCC----------CCCHHhH-HHHHHHHHhcCC
Q 006071 401 IFFRQLMKKGVLDPVA----FNNLIRGHSKEGNPD-SAFEIVKIMGRRGV----------PRDADAY-ICLIESYLRKGE 464 (662)
Q Consensus 401 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~l~~~~~~~~~ 464 (662)
.++...++..++|... .|.|+.+-....=++ .++..++....... ....... +.++..|. +.
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 9999999998666543 333333222111111 12222221111000 0011111 22233222 33
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFE--DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
-+.+.++....- +..|. ..+..++..+.+ ...+..+.+++....+..+.-.....-..+......|+++.|++++
T Consensus 323 ~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344444443332 22333 334444443322 2257788888888877655544556666778888999999999999
Q ss_pred H--------HHHhCCCCCCHH-HHHHHHhccCCHHHHHHHHHHHhcC-----CCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 006071 543 D--------LMMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGR-----DCIID-LASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 543 ~--------~~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
. .+.+.+..|... .+...+.+.++...|..++..++.. ...+. ...+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 9 777778888854 4555566666665566666555532 01111 2223344455567899999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 608 ILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
.+++++... +++......++.+|... +++.|+.+.+.+.-.
T Consensus 480 ~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 480 LLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 999999864 34777777899998887 788887776665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-07 Score=94.91 Aligned_cols=253 Identities=17% Similarity=0.212 Sum_probs=164.5
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHH
Q 006071 323 DVLKAMIRLSIP--TEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAE 400 (662)
Q Consensus 323 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 400 (662)
.+.++..+.+++ .|+.-.+.-+.++...+-+.+.++++++++-.+ +.+.-+...-+.++-... ..+..+..
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~------S~Fse~~nLQnLLiLtAi-kad~trVm 1040 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN------SVFSENRNLQNLLILTAI-KADRTRVM 1040 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC------cccccchhhhhhHHHHHh-hcChHHHH
Confidence 455666665443 456667778889999999999999999886422 112122222222222222 22333344
Q ss_pred HHHHHHHhcCCC------------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006071 401 IFFRQLMKKGVL------------------------DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLI 456 (662)
Q Consensus 401 ~~~~~~~~~~~~------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 456 (662)
++.+++-....| +..+.+.|+. .-+++++|.++-+.. ..+..|..+.
T Consensus 1041 ~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqla 1111 (1666)
T KOG0985|consen 1041 EYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLA 1111 (1666)
T ss_pred HHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHH
Confidence 444443332222 2222222221 223344444443332 2567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (662)
.+-.+.|...+|++-|-+. .|+..|..++..+.+.|.|++-.+++..+.+..-+|... ..++.+|.+.++..
T Consensus 1112 kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHH
Confidence 9999999999998777654 466788999999999999999999999888876666554 45888899999987
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 537 EALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 537 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
+-.+++ ..+...+...+++.|...|.++.|.-++... ..|..++..+...|.+..|+.--++.
T Consensus 1184 elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1184 ELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766554 2233344667889999999999998888732 24667888889999999888766553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-09 Score=101.66 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV 311 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (662)
++..+...|...|++++|++++++.+.. .|+ +..|..-.+.+-+.|++.+|...++....- ++.|..+-+..+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHH
Confidence 3355566666777777777777777665 343 456666667777777777777777776653 44466666666677
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 312 QCKSGHLNAAADVLKAMIRLSIPTEAGH--------YGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
+.+.|+.++|..++....+.+..|.... ......+|.+.|++..|++.|..+.+..
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777777777777777665543222211 1234567777788887777777665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-08 Score=97.41 Aligned_cols=353 Identities=14% Similarity=0.154 Sum_probs=216.3
Q ss_pred HHHHHhhcCCCCChHHHHH-------HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc
Q 006071 10 LQNKIRALVPQFDHNLVYN-------VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDM 82 (662)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~-------~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 82 (662)
+.++++.+....++...-+ .+...|+.+.|.+..+.+. +..+|..+.++|.+..+.+-|.-.+-.|
T Consensus 711 ~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm 783 (1416)
T KOG3617|consen 711 VAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHM 783 (1416)
T ss_pred hhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhh
Confidence 3466777777766655444 3345799999998887763 4558999999999988888887777666
Q ss_pred ccCC--------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006071 83 PKKG--------V-QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153 (662)
Q Consensus 83 ~~~~--------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 153 (662)
.... . .++ ..-..+.......|..++|..+|.+.++ |..|=..|-..|.+++|.++-+.--
T Consensus 784 ~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 784 KNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred hhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcc
Confidence 4321 0 111 2222333344677999999999999987 4555566777899999999876543
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhh
Q 006071 154 SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS 233 (662)
Q Consensus 154 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 233 (662)
+. . -..||......+-..++.+.|++.|++.... --.++..|. .++...+.+.+.+. |...
T Consensus 854 Ri--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L 914 (1416)
T KOG3617|consen 854 RI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESL 914 (1416)
T ss_pred ce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHH
Confidence 22 1 2345555666666778899999998875321 222222221 12333333333332 4455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 006071 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (662)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (662)
|.-...-+-..|+.+.|+.+|..... |-++++..|-.|+.++|-++-++- .|..+-..+.+.|-
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhh
Confidence 55555555677888888888877653 456667777788888888776542 26667777888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------------C--CcHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK-------------A--EMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (662)
..|++.+|...|.+... +...|+.|-. . .+.-.|-..|++. +.
T Consensus 979 n~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--------g~----- 1036 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--------GG----- 1036 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--------ch-----
Confidence 88888888888876643 2222222211 1 1223333444443 10
Q ss_pred ccccHHHHHHHHHhcCChhHHHHH---------HHHHHhc-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIF---------FRQLMKK-G-VLDPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 439 (662)
.+...+..|.+.|.+.+|+++ ++.+.+. . ..|+...+.-.+.++...++++|..++-.
T Consensus 1037 ---~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1037 ---YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred ---hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 122334455666666666543 2222221 1 45677777777777777777777666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-09 Score=95.51 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=160.1
Q ss_pred CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006071 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 333 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (662)
++.+......+...+...|+.++|+..|++.... .|+. .......-.+...|+.+....+...+.....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh
Confidence 4566667777777777777777777777776321 1221 1122222234456777777666666665553
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHhHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSV 490 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 490 (662)
.....|..-+......+++..|+.+-++.++.+. .+...|..-...+...|++++|.-.|+..+. +.| +...|..+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGL 374 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHH
Confidence 3444444444555556677777777777766532 2445555555666777777777777777764 333 45677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhcc
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL-EALL-MRGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEK 564 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~ 564 (662)
+..|...|++.+|...-......- .-+..+...+. ..+. ...--++|.+++++.+. ..|++ ..+...+...
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhh
Confidence 777777777777777666655541 22444444332 2222 12223667777776665 55553 3345555667
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
|+.++++.++++.+.. .++...+..+++.+...+.+.+|++.|...+...
T Consensus 452 g~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred CccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 7777777777777765 3444555567777777777777777777776653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-11 Score=120.50 Aligned_cols=249 Identities=14% Similarity=0.110 Sum_probs=130.7
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC
Q 006071 71 KLNHARCILLDMPKKGVQWDEDMFEVLIESYG---------KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR 141 (662)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 141 (662)
++++|...|++..+..+. +...|..+..++. ..+++++|...++++.+.+ +.+...+..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 456666666666655433 3444444443332 1233566667776666654 3455566666666666677
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 006071 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAE 221 (662)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 221 (662)
+++|...|++.++.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777666653 223445555666666667777777777776665332 222222333344556666777776666
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC
Q 006071 222 MKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA-VTYTALLPGLCDAGKMVEVQKVLREMVERYI-PP 299 (662)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~ 299 (662)
......+.+...+..+..++...|+.++|...+.++... .|+. ...+.+...+...| +.+...++.+.+..- .+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 654321223334555666666677777777766665443 2332 23333444445555 355555555444211 11
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (662)
....+ ....+.-.|+.+.+..+ +++.+.
T Consensus 508 -~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 -NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11111 33344445555555544 555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-11 Score=121.14 Aligned_cols=249 Identities=13% Similarity=-0.001 Sum_probs=183.4
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK---------EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGE 464 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 464 (662)
+..++|..+|++..+..|.++..+..+..++.. .+++++|...++++.+.+.. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 346789999999999998888888877766542 24478999999999987533 77888889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDL 544 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (662)
+++|...++++.+.+ +.+...+..+...+...|++++|+..++++++.++.+ ...+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999754 2335667778888999999999999999999987663 33333345557778999999999998
Q ss_pred HHhC--CCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 006071 545 MMQS--GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (662)
Q Consensus 545 ~~~~--~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (662)
+... +..|. ...+..++...|+.++|...+++..... +.+....+.++..|...| ++|...++++.+.... .+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~-~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR-ID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH-hh
Confidence 8763 22333 2346667778999999999998766553 334444556777777777 4788888886664332 11
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 622 KSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
.....+...|.-.|+.+.+..+ +.+.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1222255667778888888766 444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-09 Score=105.22 Aligned_cols=298 Identities=14% Similarity=0.157 Sum_probs=175.0
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH------hC
Q 006071 206 YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC------DA 279 (662)
Q Consensus 206 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~------~~ 279 (662)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..++..+ |+...|...+..+. ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34445555555555443332 22222333444445555555555555555555442 33333322222222 11
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH
Q 006071 280 GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL-NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIK 358 (662)
Q Consensus 280 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 358 (662)
.+.+....+++++.... | .......+.-.+.....+ ..+..++......|+|+ +|+.+-..|.......-...
T Consensus 91 ~~~~~~~~~y~~l~~~y--p-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--P-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhC--c-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 23444555555554431 2 111111111111111111 23334445555555433 45555555554444444455
Q ss_pred HHHHHHHhhhhccC------CCCCCCccccH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 006071 359 LLDKLVEKEIILRP------QSTLDMEASSY--NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 359 ~~~~~~~~~~~~~~------~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (662)
++............ ...-.|+...| ..+...|...|++++|+++.+..+.+.|..+..|..-.+.+-+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 55554432211000 01123444334 55567788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH------hH--HHHHHHHHhcCCHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS------LF--RSVMESLFEDGRVQT 502 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~ 502 (662)
.+|.+.++..+..+.. |...-+-.+..+.++|++++|..++..+.+.+..|-.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999997655 78888888999999999999999999998766433322 12 344567899999999
Q ss_pred HHHHHHHHHHc
Q 006071 503 ASRVMKSMVEK 513 (662)
Q Consensus 503 a~~~~~~~~~~ 513 (662)
|++.|..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 99888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-10 Score=106.09 Aligned_cols=197 Identities=17% Similarity=0.121 Sum_probs=120.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006071 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (662)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (662)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4455566666666666666666666665432 223445555566666667777777777666665443 44455556666
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHH
Q 006071 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (662)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 604 (662)
+...|++++|++.++++...+..|. ...++..+...|++++|...+++++...+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6677777777777776665322222 223445556677777777777777765432 34455567777777777777
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhh
Q 006071 605 AYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (662)
Q Consensus 605 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (662)
|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777665 233444444566667777777777666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-11 Score=104.93 Aligned_cols=238 Identities=10% Similarity=0.102 Sum_probs=193.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA 380 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 380 (662)
|-.--..+..+|.+.|.+..|...++...+. .|-+.||..|-.+|.+..++..|+.++.+-++.. +-++
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---------P~~V 290 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---------PFDV 290 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---------Cchh
Confidence 3444566788888889988888888887775 5667788888899999999999999998875432 2233
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
....-+...+...++.++|.++++...+..+.+.....++...|...++++-|+.+++.+.+.|+. ++..|+.+.-+|.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ 369 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHH
Confidence 344556677778899999999999999999889999999999999999999999999999998877 8889999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 461 RKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
-.++++-++..|++....--.|+ ..+|..+.......||+.-|.+.|+-.+..+.. +.+.++.+.-.-.+.|++++|
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHH
Confidence 99999999999999886544344 456777777788899999999999988877655 677788888888899999999
Q ss_pred HHHHHHHHhCCCCCC
Q 006071 539 LGRIDLMMQSGSVPN 553 (662)
Q Consensus 539 ~~~~~~~~~~~~~p~ 553 (662)
..++..... ..|+
T Consensus 449 rsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 449 RSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHHHhhh--hCcc
Confidence 999887765 4444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-11 Score=103.93 Aligned_cols=236 Identities=14% Similarity=0.083 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHH
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY-TALL 273 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 273 (662)
|..--+.+..+|.+.|.+.+|.+.|+..... .|-+.||..|-++|.+..++..|+.+|.+-.+. .|-.+|| ..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3444467888899999999999998887765 567788888889999999999999999887765 4555554 4566
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH
Q 006071 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMY 353 (662)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 353 (662)
+.+-..++.+++.++|+...+. .|.+......+...|.-.++.+.|+.+|+++.+.|+ .++..|..+.-+|.-.+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 7778888899999999988885 566777777777788888888999999999988884 5677788788788888888
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 006071 354 DRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (662)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 433 (662)
+-++..|.+.+... ...+ .....|-.+.......|++..|...|+.....++.+...++.|.-.-.+.|++++|
T Consensus 375 D~~L~sf~RAlsta----t~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 375 DLVLPSFQRALSTA----TQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhhHHHHHHHHhhc----cCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 88888888875432 1111 12335666666666778888888888888888777888888888888888888888
Q ss_pred HHHHHHHhhC
Q 006071 434 FEIVKIMGRR 443 (662)
Q Consensus 434 ~~~~~~~~~~ 443 (662)
..++......
T Consensus 449 rsll~~A~s~ 458 (478)
T KOG1129|consen 449 RSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhhh
Confidence 8888777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-08 Score=92.02 Aligned_cols=454 Identities=14% Similarity=0.119 Sum_probs=250.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
..+..=+..+...|++++|.+...++...++ -+...+..-+.+.++.++|++|+.+.+.-.... ..+...+ .-.-+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~ 89 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCE 89 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHH
Confidence 3445556777888999999999999888663 377788888888899999999996655433110 0111111 112233
Q ss_pred HHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChHHH
Q 006071 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISL-DVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a 215 (662)
.+.+..++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+-. .-.+
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 46788999998888331 2234466666677888999999999999998774431 1111122222111 1111
Q ss_pred HHHHHHHHHCCCCCCHhhHHH---HHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCH-------HHHHHHHHHHHh
Q 006071 216 EKLFAEMKEKNIEPTVISYTT---MIKGYVAVERADDALRIFDEMKSF-------DVKPNA-------VTYTALLPGLCD 278 (662)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~ll~~~~~ 278 (662)
. +.+.... .| ..+|.. ..-.++..|++.+|++++...... +-..+. ..-..+..++..
T Consensus 162 ~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 2222221 22 223433 344566789999999999887211 101111 112233445667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc---CC-hH-HHHHHHHHHHhCCC----------CCChhhH-HH
Q 006071 279 AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS---GH-LN-AAADVLKAMIRLSI----------PTEAGHY-GI 342 (662)
Q Consensus 279 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-~~-~a~~~~~~~~~~~~----------~~~~~~~-~~ 342 (662)
.|+..+|..++...++.. |.|.........-.... .+ ++ .++..++....... .-..... +.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998888873 33543332222221111 11 11 11111211111000 0000111 11
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCC-HHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC--HNGQTGKAEIFFRQLMKKGVLD-PVAFNN 419 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 419 (662)
++..|. +.-+.+.++.... .+..|.. .+..++..+. +......+.+++....+..+.+ ..+...
T Consensus 315 lL~l~t--nk~~q~r~~~a~l----------p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 315 LLALFT--NKMDQVRELSASL----------PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHh--hhHHHHHHHHHhC----------CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH
Confidence 222221 2223333333222 1122322 2333333322 2224667777777777666444 556677
Q ss_pred HHHHHHhcCChhHHHHHHH--------HHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCcHHh---
Q 006071 420 LIRGHSKEGNPDSAFEIVK--------IMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED--GHSPASSL--- 486 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--- 486 (662)
.++.....|+++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++...+.. .-.+....
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 7788888899999998888 4444333 3445556667777777777777777766532 11122222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 487 -FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 487 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
+..+...-.+.|+.++|..+++++.+.++. +..+...++.+|++. +++.|..+-+.+
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 222233335578899999999998887554 777777788888765 667777665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-10 Score=102.26 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006071 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (662)
Q Consensus 267 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (662)
..+..+...+...|++++|...+++..+. .|.+...+..+...+...|+++.|...+++..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34445555555566666666666655543 34445555555566666666666666666555543 3334445555556
Q ss_pred HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 006071 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (662)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (662)
+...|++++|...++..+... ........+..+..++...|++++|...+.+.....+.+...+..+...+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 666666666666666654311 0011122344445555566666666666666665555555556666666666
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
.|++++|...++..... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665554 23344455555555556666666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8e-10 Score=92.07 Aligned_cols=204 Identities=18% Similarity=0.123 Sum_probs=152.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
.+...|.-.|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++++...+. +..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 345667778888888888888888888754 223567777777888888888888888888887666 677778888888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 605 (662)
|..|++++|.+.|++.+..+.-|. +..++.+-.++|+.+.|..+++++++.++..++.. ..+++..++.|++-+|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~-l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL-LELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH-HHHHHHHHhcccchHH
Confidence 888888999888888887554443 33455555578888899999998888875555443 4688888889999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhccccchh
Q 006071 606 YSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657 (662)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 657 (662)
.-++++....++ ....+.--.+..-...|+.+.|.+....+.+.-+.+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 888888777766 555555556666777888888877666666655554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-09 Score=87.14 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006071 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (662)
+...+.-.|...|++..|..-+++.++. +|++..++..+...|.+.|+.+.|.+.|+...+.. |.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455666788888888888888888885 67778888888888888888888888888888764 56677788888888
Q ss_pred HcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 006071 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (662)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (662)
|..|++++|...|+..+.. | ....-..+|..+.-|..+.|+.+.|...|++..+..+..+.+...+.+.....
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----P--~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----P--AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----C--CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 8888999999988888643 2 22223457778888888899999999999999998888888888899999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 428 GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
|++-.|..+++.....+. ++.......|..-...|+.+.+.+.=..+.+
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999988887754 7888888888888888888888777666664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-07 Score=92.45 Aligned_cols=583 Identities=12% Similarity=0.010 Sum_probs=292.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC-CCHHHHHHHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ-WDEDMFEVLIESYG 102 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 102 (662)
..+..+++..-+...|.+-|+.+-+.+ +.+..++......|....+++.|..+.-...+.... .-..-|....-.|.
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 445556666667788888888887776 677788888888888888888887774433322110 01122333444556
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH--HHHHHhcCCHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM--LWGFFLSLKLETA 180 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a 180 (662)
..++...|+..|+...+.. |.|...|..+..+|.+.|++..|+++|.+.... .|+. +|... ....+..|.+.++
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 6677777777777766643 346667777777777777777777777666543 2221 12111 1123345666666
Q ss_pred HHHHHHHHhCC------CCCCHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHCCCC-------------------
Q 006071 181 IRFFEDMKSRG------ISLDVVTYNTMINGYNRF-------KKMDEAEKLFAEMKEKNIE------------------- 228 (662)
Q Consensus 181 ~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~-------g~~~~a~~~~~~~~~~~~~------------------- 228 (662)
...+..+.... ..--..++..+...+... .-++++.+.|.........
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 66555544210 000011111111111000 0112222222222211101
Q ss_pred -C------------------------------------------CHhhHHHHHHHHHh-------c-CCHHHHHHHHHHH
Q 006071 229 -P------------------------------------------TVISYTTMIKGYVA-------V-ERADDALRIFDEM 257 (662)
Q Consensus 229 -~------------------------------------------~~~~~~~l~~~~~~-------~-~~~~~a~~~~~~~ 257 (662)
| +..+|..++..|.+ . .+...|+..+...
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 1 11222222222211 0 1112344444443
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 006071 258 KSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEA 337 (662)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (662)
.+.. ..+..+|+.+.-. ...|++.-+.-.|-+... ..|.+..+|..+...+.+..+++.|...|....... |.+.
T Consensus 810 V~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 810 VSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 3321 2233334333322 333444444444433333 245556666666666677778888888888777653 4445
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH----------HHHHHHHH
Q 006071 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA----------EIFFRQLM 407 (662)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~ 407 (662)
..|.-........|+.-+...+|..-.+.. ...+-.++...|.........+|+.+.- .-.++...
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~----~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELC----SKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhh----ccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 555444444445666667777766532222 2333344544454444444555554443 33444445
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYI----CLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
...|.+..+|...+...-+.+.+..|.+...+.... ....+...|+ .+.+.++..|+++.|...+...- ...
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~---~ev 1037 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW---MEV 1037 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc---hhH
Confidence 555777888888888888888888887776654320 1123445555 34455666777776654443221 111
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH--
Q 006071 483 ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLL-- 558 (662)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-- 558 (662)
+......-+. ..-.|+++++.+.|+++... +..-+ ......++.+....+.-+.|...+-+.... ..|+...+.
T Consensus 1038 dEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L 1115 (1238)
T KOG1127|consen 1038 DEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPL 1115 (1238)
T ss_pred HHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHH
Confidence 2221111111 24468999999999998875 22223 344566777777888888888766655541 223322211
Q ss_pred ---HHHh-ccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 006071 559 ---SVLS-EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLI 628 (662)
Q Consensus 559 ---~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 628 (662)
..+- ..-.-..+++-+++......-.-+..+ ..-..|.+.|+-.-.-+++++..-..+ .+...|..|-
T Consensus 1116 ~A~~ild~da~~ssaileel~kl~k~e~~~~~~~l-l~e~i~~~~~r~~~vk~~~qr~~h~~P-~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1116 PAVYILDADAHGSSAILEELEKLLKLEWFCWPPGL-LKELIYALQGRSVAVKKQIQRAVHSNP-GDPALWSLLS 1187 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhH-HHHHHHHHhhhhHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 1111 111111122222222221100111222 233445567888777788888775432 2444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-09 Score=104.42 Aligned_cols=234 Identities=16% Similarity=0.128 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-C
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRR-----GV-PRDA-DAYICLIESYLRKGEPADAKTALDSMIED-----GH-S 481 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 481 (662)
.+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++.+|..+|+++..- |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666666666666666655432 10 1122 22233555666666666666666666532 11 1
Q ss_pred Cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh---CCC
Q 006071 482 PA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-EN-LDLVAKILEALLMRGHVEEALGRIDLMMQ---SGS 550 (662)
Q Consensus 482 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 550 (662)
|. ..+++.|..+|.+.|++++|...++.+.+. +.. |. ...++.+...+...+++++|..++++.++ .-+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 234455555666666666666666665432 111 11 12234555566666666666666665443 111
Q ss_pred CCC-------HHHHHHHHhccCCHHHHHHHHHHHhcCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 006071 551 VPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRD----CIID---LASYEKVLDALLAAGKTLNAYSILFKIME-- 614 (662)
Q Consensus 551 ~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 614 (662)
.++ ...+...|...|++++|..++++++... ...+ ...++.++..|.+.+++.+|.++|.....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 1235556666677777777766666432 1111 23445566666666666666666665331
Q ss_pred -c--CCC-CcHhhHHHHHHHHHhcCCcchhHHHHHHhh
Q 006071 615 -K--GGV-TDWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (662)
Q Consensus 615 -~--~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (662)
. .+. ....+|..|+..|...|++++|..+.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 111 123355566777777777777755555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-07 Score=88.85 Aligned_cols=196 Identities=15% Similarity=0.182 Sum_probs=127.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 006071 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (662)
Q Consensus 272 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (662)
.+.+......+.+|+.+++.+..+.. ....|..+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 34555667788888888888776532 34456677788888888888888886542 3566788888888
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChh
Q 006071 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (662)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (662)
+|..|.++-++... .......|.+-..-.-..|++.+|.++|-.+ +.|+ ..+.+|-+.|..+
T Consensus 806 kw~da~kla~e~~~----------~e~t~~~yiakaedldehgkf~eaeqlyiti---~~p~-----~aiqmydk~~~~d 867 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG----------PEATISLYIAKAEDLDEHGKFAEAEQLYITI---GEPD-----KAIQMYDKHGLDD 867 (1636)
T ss_pred cHHHHHHHHHHhcC----------chhHHHHHHHhHHhHHhhcchhhhhheeEEc---cCch-----HHHHHHHhhCcch
Confidence 88888888777621 1123344544455566777887777766432 2233 2466777777777
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (662)
Q Consensus 432 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (662)
..+++...-.. ..-..|...+..-+...|+...|...|-+.. -|.+.+..|..++.|++|.++-+.
T Consensus 868 dmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 868 DMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 77766654332 1123455566667777788888877665543 245556667777777777665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-06 Score=85.35 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCC------CCHHhHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVP------RDADAYICL 455 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l 455 (662)
...++..|...|.+++.+.+++............|+-|.-.|++- .+++..+.++....+ +++ -..+.|+.+
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~El 1360 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSEL 1360 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665544444555666666666553 455555544443321 111 123456666
Q ss_pred HHHHHhcCChHHH
Q 006071 456 IESYLRKGEPADA 468 (662)
Q Consensus 456 ~~~~~~~~~~~~a 468 (662)
+-.|.+-..++.|
T Consensus 1361 vfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1361 VFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHhhhhhhHH
Confidence 6666655555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-07 Score=86.75 Aligned_cols=459 Identities=15% Similarity=0.128 Sum_probs=238.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhccc--------------------CCCC
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK--------------------KGVQ 88 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------~~~~ 88 (662)
.-...|+++.|..+++... .+ |.....|..+.......|+.--|.++|..+-+ .|-.
T Consensus 453 aaid~~df~ra~afles~~-~~--~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd 529 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLE-MG--PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD 529 (1636)
T ss_pred cccccCchHHHHHHHHhhc-cC--ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC
Confidence 3445789999998888763 22 33444566666666666666666555543321 0100
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
.+..|..-.....-..++.+|..+|-+-- + -...|..|....+|++|+.+-+.. |.+.-...-.+.+
T Consensus 530 -gt~fykvra~lail~kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~ 596 (1636)
T KOG3616|consen 530 -GTDFYKVRAMLAILEKKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYL 596 (1636)
T ss_pred -CchHHHHHHHHHHHHhhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHH
Confidence 11112111111112223444444442211 0 112333444445555555543322 2211112223334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD 248 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (662)
.++...|+-++|-++- .. +-.+ .+.|+.|.+.|.+..|.+....=.. +..|......+..++.+..-++
T Consensus 597 q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 597 QALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHH
Confidence 4444455554443321 11 1111 2345666666766665543321111 1235555555555566656666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 006071 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNS-VFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
+|-.+|+.+.. | ...+.++.+-.-+.+|+++-+-. .|.... .-......+...|+++.|...|-+
T Consensus 666 kagdlfeki~d----~-----dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 666 KAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred hhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 66666665542 1 12223333333344444443322 121111 112233445556777777666644
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
... .-..+.+.....+|.+|+.+++.+.++. .....|..+...|+..|+++.|.++|...
T Consensus 732 a~~---------~~kaieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 732 ANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred hhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 321 2334566667788888888888774332 12234666777888888888888888653
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhH
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF 487 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 487 (662)
..++-.+.+|.+.|+++.|.++-.+.. |.......|..-..-+-++|++.+|.+++-... .|+
T Consensus 792 -------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~---- 854 (1636)
T KOG3616|consen 792 -------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD---- 854 (1636)
T ss_pred -------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch----
Confidence 235667788888888888888765554 334455666666666777888888877766542 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCH
Q 006071 488 RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKT 567 (662)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~ 567 (662)
..+..|-+.|..++.+++.++-.... -..+-..+..-|-..|+..+|.+.|-+.- ++...++.|...+-+
T Consensus 855 -~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 855 -KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELW 924 (1636)
T ss_pred -HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhH
Confidence 33456777777777777666542221 12334456666677777777776554332 233445555555666
Q ss_pred HHHHHHHH
Q 006071 568 IAAVKLLD 575 (662)
Q Consensus 568 ~~A~~~~~ 575 (662)
++|-++.+
T Consensus 925 ~dayriak 932 (1636)
T KOG3616|consen 925 EDAYRIAK 932 (1636)
T ss_pred HHHHHHHh
Confidence 66655543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-09 Score=97.52 Aligned_cols=205 Identities=15% Similarity=-0.016 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHH
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMES 493 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 493 (662)
..|..+...+...|+.++|...|+...+..+ .+...|+.+...+...|++++|...|++.++. .|+ ...+..+...
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3455555555555666666665555555432 24555555666666666666666666665542 232 3444445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHH--H
Q 006071 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA--V 571 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A--~ 571 (662)
+...|++++|.+.++...+.++.. .. .......+...+++++|++.+++.... ..|+...+.......|+..++ .
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~-~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPND-PY-RALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGWNIVEFYLGKISEETLM 218 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHHHHHHHHccCCCHHHHH
Confidence 555666666666666665554331 11 111111223345566666666443321 122211112222223333222 2
Q ss_pred HHHHHHhcCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHH
Q 006071 572 KLLDFCLGRDCI---IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDK 626 (662)
Q Consensus 572 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 626 (662)
+.+...++..+. .....|..++..+.+.|++++|+..|++.+... +++...+..
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 222212211111 113456667777777777777777777777654 334444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-07 Score=92.37 Aligned_cols=455 Identities=16% Similarity=0.187 Sum_probs=235.4
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC-C--------C
Q 006071 89 WDEDMFEVLIE--SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-G--------I 157 (662)
Q Consensus 89 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--------~ 157 (662)
-|..+...++. .|..-|+.+.|.+-++.++ +...|..+.+.|.+.++.+-|.-.+..|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 36666666664 4667788888887777664 3457888888888887777766555544321 0 0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
.++ .+-..+.......|.+++|+.+|.+..+. ..|=..|-..|.+++|.++-+.-..-. -..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 11111222233557777777777666543 223334555677777776654432211 22355555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 006071 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGH 317 (662)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (662)
..-+-..++.+.|++.|++... |--..+..+. .++.....+.+++ .|...|.......-..|+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESVGE 927 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcccc
Confidence 5556666777777777765421 1111111111 1122222222221 145566666666666777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChh
Q 006071 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTG 397 (662)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 397 (662)
.+.|+.+|....+ |..++...|-.|+.++|-.+-++- -|......+.+.|-..|++.
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--------------gd~AAcYhlaR~YEn~g~v~ 984 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--------------GDKAACYHLARMYENDGDVV 984 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--------------ccHHHHHHHHHHhhhhHHHH
Confidence 7777777766654 455666666677777776666553 23334455666666777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMI 476 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 476 (662)
+|..+|.++. ++...|+.|-.. ++++-+.-+..|. +.. | .......|...| +.+.|..++.+.
T Consensus 985 ~Av~FfTrAq--------afsnAIRlcKEn-d~~d~L~nlal~s--~~~-d---~v~aArYyEe~g~~~~~AVmLYHkA- 1048 (1416)
T KOG3617|consen 985 KAVKFFTRAQ--------AFSNAIRLCKEN-DMKDRLANLALMS--GGS-D---LVSAARYYEELGGYAHKAVMLYHKA- 1048 (1416)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHhc-CHHHHHHHHHhhc--Cch-h---HHHHHHHHHHcchhhhHHHHHHHhh-
Confidence 7777776643 345555544332 2222111111111 100 1 111222333333 444444444433
Q ss_pred HcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 006071 477 EDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS 556 (662)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 556 (662)
|. +...+....+..++ .|+++.. .+.....|+...+.....++...++++|+.++-...+ +..
T Consensus 1049 --Gm------~~kALelAF~tqQf-~aL~lIa--~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~------~~~ 1111 (1416)
T KOG3617|consen 1049 --GM------IGKALELAFRTQQF-SALDLIA--KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE------FSG 1111 (1416)
T ss_pred --cc------hHHHHHHHHhhccc-HHHHHHH--HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHH
Confidence 11 11111111111111 1111111 1225556788888888888888899999988765543 111
Q ss_pred HHHHHhccCCHHHHHHHHHHHh-cCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCL-GRDCIID----LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL 631 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (662)
.+..| ...+..-..++.+.+- .++..++ ......+++.+.++|.+.-|.+-|-+.-.+- .-.+++
T Consensus 1112 AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl---------~AMraL 1181 (1416)
T KOG3617|consen 1112 ALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL---------SAMRAL 1181 (1416)
T ss_pred HHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH---------HHHHHH
Confidence 22222 2222222222333221 1111222 3455678899999999999988877654331 145677
Q ss_pred HhcCCcchhHHHHH
Q 006071 632 NQEGNTKQADILSR 645 (662)
Q Consensus 632 ~~~g~~~~a~~~~~ 645 (662)
.+.|++++..-++.
T Consensus 1182 LKSGdt~KI~FFAn 1195 (1416)
T KOG3617|consen 1182 LKSGDTQKIRFFAN 1195 (1416)
T ss_pred HhcCCcceEEEEee
Confidence 78888877644433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-08 Score=99.38 Aligned_cols=245 Identities=15% Similarity=0.132 Sum_probs=152.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCh-hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCC
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-----S-IPTEA-GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (662)
-..+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++++|..+|++++........
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G- 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG- 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-
Confidence 3445555666666667777666666665543 1 12222 23345777888999999999999998776432111
Q ss_pred CCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhC--
Q 006071 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-----VLDP---VAFNNLIRGHSKEGNPDSAFEIVKIMGRR-- 443 (662)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 443 (662)
...+.-..+++.|..+|.+.|++++|...++.+.+.- ...+ ..++.+...++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1111123456677778888899888888877765432 1122 24566667777788888888877765431
Q ss_pred -CCCC----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 444 -GVPR----DADAYICLIESYLRKGEPADAKTALDSMIED----GH--SPA-SSLFRSVMESLFEDGRVQTASRVMKSMV 511 (662)
Q Consensus 444 -~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (662)
-+.+ -..+++.|...|...|++++|.++++.++.. +. .+. ...++.+...|.+.+.+++|..+|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 1356777788888888888888777776632 11 111 3345666667777777777777777654
Q ss_pred Hc----CCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 512 EK----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 512 ~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
.. |+. | ...+|..|...|...|++++|+++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 222 1 24456777777777777777777766655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-08 Score=83.70 Aligned_cols=355 Identities=12% Similarity=0.107 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHH-HHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV-MLW 169 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~ 169 (662)
..-+++.+..+.+..++.+|++++..-.++. +.+....+.+..+|-...++..|-+.++++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3345666666677788888888888777654 236667777777888888888888888888654 344443432 234
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMING--YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (662)
.+.+.+.+..|+++...|... ++...-..-+.+ ....+++..+..+++.....| +..+.+...-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 555778888888888777653 222222222222 234677888888887776433 444444444455678888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHH----HHHHHHHhcCChHHHHH
Q 006071 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM----KLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~ 323 (662)
+.|.+-|+...+.+--.....|+..+ ++.+.|+++.|.+...+++++|+.. .+..-. ..+++ ...|+. ..
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~-HPElgIGm~tegiDv-rsvgNt---~~ 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ-HPELGIGMTTEGIDV-RSVGNT---LV 234 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc-CCccCccceeccCch-hcccch---HH
Confidence 88888888887654333445666555 4556788888888888888887653 111100 00000 000100 00
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHH
Q 006071 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFF 403 (662)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 403 (662)
+.. ..-...+|.-...+.+.++++.|.+.+.+|- |......|+.|...+.-. -..+++.....-+
T Consensus 235 lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP-------PRaE~elDPvTLHN~Al~-n~~~~p~~g~~KL 299 (459)
T KOG4340|consen 235 LHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMP-------PRAEEELDPVTLHNQALM-NMDARPTEGFEKL 299 (459)
T ss_pred HHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCC-------CcccccCCchhhhHHHHh-cccCCccccHHHH
Confidence 000 0011234444555678899999999888872 444455677776554332 1245566677777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 404 RQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDADAYICLIESYLRKGEPADAKTALDSM 475 (662)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 475 (662)
.-+....|..+.||..++-.||+..-++.|-.++.+-..... -.+...|+.+=....-.-.+++|.+-++.+
T Consensus 300 qFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 300 QFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777888889999999999999989988888765433211 123344443333223334566666555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-07 Score=79.26 Aligned_cols=311 Identities=13% Similarity=0.118 Sum_probs=168.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 006071 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (662)
+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+.+.++. .|+-..+...-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444555566666666666555431 111122222334555566666666666665553 4422333333445556666
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCCh
Q 006071 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (662)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (662)
.++.|..=|+.+++.. |+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~------------------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW------------------------VLVQQLKSASGSGDC 171 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH------------------------HHHHHHHHHhcCCch
Confidence 6666666666666543 21111 011111100001100 111222334445666
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
..++.....+++..+.+...+..-..+|...|++..|+.-++...+..-. +..++--+-..+...|+.+.++..+.+.+
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666555554322 44444445555556666666666666665
Q ss_pred HcCCCCcHHh----HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCHHHHHH
Q 006071 477 EDGHSPASSL----FRSV---------MESLFEDGRVQTASRVMKSMVEKGVKENL---DLVAKILEALLMRGHVEEALG 540 (662)
Q Consensus 477 ~~~~~~~~~~----~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 540 (662)
+. .||... |..+ +....+.++|.++.+..+..++..+.... ..+..+-.|+...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 42 344321 1111 11234567788888888887776554222 334556677777888899998
Q ss_pred HHHHHHhCCCCCC-HHHH---HHHHhccCCHHHHHHHHHHHhcCCCCC
Q 006071 541 RIDLMMQSGSVPN-FDSL---LSVLSEKGKTIAAVKLLDFCLGRDCII 584 (662)
Q Consensus 541 ~~~~~~~~~~~p~-~~~~---~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (662)
...++++ +.|+ ...+ ..+|.....+++|+.=|+++.+.+..+
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 8888887 6777 3333 345555678888888888888775443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-07 Score=88.30 Aligned_cols=437 Identities=11% Similarity=0.022 Sum_probs=252.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
++....|+++.|+..|..+...+ |++...|+.-..+|...|++.+|.+=-.+.++..+. -+..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 46678999999999999999988 789999999999999999999998877777665443 467899999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH---HHHHHHHHhCC---CCcCHHHHHHHHHHHHhc-------
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA---KRYFNKMLSEG---IEPTRHTYNVMLWGFFLS------- 174 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~------- 174 (662)
++|+.-|.+-.+.. +.+...++.+..++......... -.++..+.... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988864 34556677777766211100000 01111111100 000011122222111100
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCChH----HHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHH
Q 006071 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR-FKKMD----EAEKLFAEMKE-KNIEPTVISYTTMIKGYVAVERAD 248 (662)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 248 (662)
.+.+......-.+...+. . .+..--..... ..... .......++.+ ....--..-...+.++..+..++.
T Consensus 166 l~d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred cccHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 000000000000000000 0 00000000000 00000 00000000000 000001122445677777777888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-c----HHHHHHHHHHHHhcCChHHHHH
Q 006071 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK-D----NSVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~ 323 (662)
.+++-+....... -+..-++....++...|.+..+.......++.|.... + ...+..+...|.+.++++.++.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 8888888777653 3444455666677777877777777776666543210 0 0112223446666788888988
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHH
Q 006071 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIF 402 (662)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~ 402 (662)
.|.+.......|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|...
T Consensus 320 ~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~----------pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 320 YYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN----------PEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC----------hhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 88887665433322 122333444544444432111 111 1122225567788999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
|.++++..|.|...|....-+|.+.|.+..|+.-.+...+.+ ++....|.-=..++....+++.|.+.|++.++.. |
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p 457 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--P 457 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--c
Confidence 999999989999999999999999999999998888887764 3345666666677777788999999999988654 6
Q ss_pred cHHhHHHHHHHHHh
Q 006071 483 ASSLFRSVMESLFE 496 (662)
Q Consensus 483 ~~~~~~~l~~~~~~ 496 (662)
+..-+..-+.-|..
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 65555444444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-08 Score=93.01 Aligned_cols=226 Identities=15% Similarity=0.121 Sum_probs=154.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNH--DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (662)
...+...+..+.++..+.+++...+..| .+..|.....++...|++++|...|++..+..+. +...|+.+...+...
T Consensus 33 ~~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 33 AVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQA 111 (296)
T ss_pred ccccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 3355556778889999988886542222 2456888888889999999999999998887654 688899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006071 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFF 184 (662)
Q Consensus 105 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 184 (662)
|++++|...|+...+.. +.+..+|..+..++...|++++|++.|++..+.. |+..........+...+++++|...+
T Consensus 112 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 112 GNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999998754 3456778888888888999999999999988753 33221222222334567889999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHC---CC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 185 EDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK---NI---EPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
....... .++...+ .+.. ...|+...+ +.++.+.+. .+ +....+|..+...+...|++++|...|++..
T Consensus 189 ~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7655432 2232222 2222 334555443 344444321 00 1123467778888888888888888888887
Q ss_pred hCC
Q 006071 259 SFD 261 (662)
Q Consensus 259 ~~~ 261 (662)
..+
T Consensus 264 ~~~ 266 (296)
T PRK11189 264 ANN 266 (296)
T ss_pred HhC
Confidence 654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-07 Score=87.35 Aligned_cols=104 Identities=12% Similarity=0.133 Sum_probs=65.9
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHHcCCh
Q 006071 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERS-VKSYDALFKLILRRGRY 142 (662)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~ 142 (662)
.+.+..|+++.|...|-+.+..++. |...|+.-..+|...|++++|.+--.+.++.. |+ +..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 4455667777777777777666554 66667777777777777777776665555532 33 34666777777777777
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006071 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171 (662)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 171 (662)
++|+.-|.+-++.. +.+...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 77777777766642 22444445555444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=75.84 Aligned_cols=49 Identities=43% Similarity=0.911 Sum_probs=24.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006071 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC 277 (662)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 277 (662)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444555555555555555555555555555455555555555544443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.9e-11 Score=75.81 Aligned_cols=49 Identities=49% Similarity=0.815 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006071 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (662)
Q Consensus 194 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (662)
||+.+||+++++|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-06 Score=75.95 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=199.8
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHH-HHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFE-VLIES 100 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 100 (662)
.+..++..|.+..++..|+++.....++. |.+...++.+..+|....++..|..+++++-..- |...-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 35566666778889999999999998887 7789999999999999999999999999987653 3333333 23456
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH--HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL--ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLE 178 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 178 (662)
+-+.+.+.+|+++...|... ++...-..-+.+ .-..+++..+..+.++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 66889999999999988752 322222222222 234688888888888875432 3334444444455889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC-------------CH--------------
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP-------------TV-------------- 231 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~-------------- 231 (662)
.|.+-|+...+-+--.....|+..+ +..+.|+++.|.+...++.++|+.. |+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999988764443556666544 4556789999999999988876431 11
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 232 -ISYTTMIKGYVAVERADDALRIFDEMKSF-DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 232 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
..+|.-...+.+.++++.|.+.+-.|.-. ....|++|...+.-. -..+++.....-+.-++.. .|-...+|..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCChHHHHHHH
Confidence 12233334456778888888888887422 234567777665432 2234455555555555554 344567888888
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 006071 310 GVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~ 328 (662)
-.||++.-++.|-+++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8999998888888887653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-07 Score=87.81 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH--HhHHHHHHHHHh
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDA--DAYICLIESYLR 461 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~ 461 (662)
.+...+...|++++|...+++..+..+.++..+..+..++...|++++|..+++....... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3444566677777777777777777766666777777777777777777777776665321 1222 334566677777
Q ss_pred cCChHHHHHHHHHHH
Q 006071 462 KGEPADAKTALDSMI 476 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~ 476 (662)
.|++++|..++++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 777777777777765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-07 Score=87.65 Aligned_cols=191 Identities=11% Similarity=-0.015 Sum_probs=90.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH----h
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHD-RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG----K 103 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 103 (662)
.+...|+++.+...+....+..+...+ ..........+...|++++|..++++.....+. +...+.. ...+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDF 92 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhccc
Confidence 333445555555555555444311111 122223334455666666666666665554322 3333331 11111 1
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRF 183 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 183 (662)
.+....+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 93 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 93 SGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 2333334433333111 111122233344455566666666666666666543 22344555555566666666666666
Q ss_pred HHHHHhCCCC-CCH--HHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 184 FEDMKSRGIS-LDV--VTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 184 ~~~~~~~~~~-~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
++........ ++. ..|..+...+...|++++|..++++..
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6665543211 121 233455556666666666666666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.7e-07 Score=78.96 Aligned_cols=195 Identities=11% Similarity=-0.026 Sum_probs=119.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHH-HHHHHHHHHh
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDM-FEVLIESYGK 103 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 103 (662)
-+...+...|++..|+..|-.+.+-+ |.+-.++..-..+|...|.-.-|+.=|.++... .||... ...-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34556777788888888888777655 556666666677777788777777777776654 344322 2222345667
Q ss_pred cCChhHHHHHHHHHHHcCCCcC--HHhHH------------HHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERS--VKSYD------------ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
+|.++.|..-|+...+.....+ ...+. ..+..+...|+...|+.....+++.. +-|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 7888888888888777542111 11111 11222334566777777777666642 235566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 225 (662)
+|...|++..|+.=+....+.... ++..+--+-..+...|+.+.++...++..+.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 677777777776666665554322 4555555556666667777777666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-08 Score=92.83 Aligned_cols=253 Identities=15% Similarity=0.154 Sum_probs=177.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 006071 276 LCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDR 355 (662)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (662)
+.+.|++.+|.-.|+..++. .|.+..+|..|.......++-..|+..+.+..+.. |.+....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 46778888888888888886 67788888888888888888888888888888765 5667777778888888888888
Q ss_pred HHHHHHHHHHhhhhccCCCCCCC----ccccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCC
Q 006071 356 AIKLLDKLVEKEIILRPQSTLDM----EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGN 429 (662)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 429 (662)
|+..++..+.... .....+ +...-.. ..+..........++|-.+.... ..|+.+...|.-.|--.|+
T Consensus 372 Al~~L~~Wi~~~p----~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 372 ALKMLDKWIRNKP----KYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHhCc----cchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 8888888765431 000000 0000000 01111122334445555555544 3899999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHH
Q 006071 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTASRVMK 508 (662)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 508 (662)
+++|...|+.+.... +-|..+||-|...++...+.++|+..+.+.++ ++|.. .+...+.-+|...|.+++|.+.|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998864 33778999999999999999999999999985 56763 455566778899999999998888
Q ss_pred HHHHcC---------CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006071 509 SMVEKG---------VKENLDLVAKILEALLMRGHVEEALG 540 (662)
Q Consensus 509 ~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (662)
.++... ..++...|..|=.++.-.++.|-+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 776531 12234566666666666666554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-08 Score=93.62 Aligned_cols=244 Identities=16% Similarity=0.165 Sum_probs=184.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 468 (662)
-+.+.|+..+|.-.|+..++..|.+..+|..|.......++-..|+..++++.+.... +......|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 3567899999999999999999999999999999999999999999999999997533 778889999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHH------H--HHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006071 469 KTALDSMIEDGHSPASSLFRSV------M--ESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l------~--~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
...++..+...+ .......- . ..+.....+....++|-.+... +..+++.+...|.-.|.-.|++++|+
T Consensus 373 l~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999999876431 11000000 0 1122223345555566555544 54578888899999999999999999
Q ss_pred HHHHHHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 540 GRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 540 ~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+.|+..+. .+|+. +.++..++...+.++|+..|.++++..|.--..-| .|+-.|+..|.++||++.|-..+.-
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry-NlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY-NLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh-hhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999997 88884 44555666778999999999999998544444545 5899999999999999999886642
Q ss_pred C---------CCCcHhhHHHHHHHHHhcCCcc
Q 006071 616 G---------GVTDWKSSDKLIAGLNQEGNTK 638 (662)
Q Consensus 616 ~---------~~~~~~~~~~l~~~~~~~g~~~ 638 (662)
. +..+...|..|-.++...++.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 1 1112345555666666666666
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-05 Score=74.05 Aligned_cols=430 Identities=11% Similarity=0.102 Sum_probs=228.1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
+-|..+|..||+-+... ..++++..++++... ++-....|...+..-...++++..+.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 34778888888766544 888888888888765 44456778888888888888888888888877652 355566655
Q ss_pred HHHHHhc-CCHHH----HHHHHHHHh-hCCCCCCH-HHHHHHHHHH---------HhCCCHHHHHHHHHHHHHcCCCCCc
Q 006071 238 IKGYVAV-ERADD----ALRIFDEMK-SFDVKPNA-VTYTALLPGL---------CDAGKMVEVQKVLREMVERYIPPKD 301 (662)
Q Consensus 238 ~~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~ 301 (662)
+.--.+. ++... ..+.|+-.. +.|+.+-. ..|+..+..+ ....+++...+++++++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t---P-- 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT---P-- 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC---c--
Confidence 5433222 22222 222333322 23333222 2333333321 2233445566666666553 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccc
Q 006071 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (662)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (662)
.+.+++-+.=|....+ ..|..+-..++. -+...+..|.++++++..............|...
T Consensus 168 -------------m~nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 168 -------------MHNLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred -------------cccHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 1112222222222111 111222121211 1233456666666665432211111111111111
Q ss_pred c---------HHHHHHHHHhcCC--------hhHHHHHHHHHHhcCCCCHHHHHHHHH-------HHHhcCC-------h
Q 006071 382 S---------YNPMIQHLCHNGQ--------TGKAEIFFRQLMKKGVLDPVAFNNLIR-------GHSKEGN-------P 430 (662)
Q Consensus 382 ~---------~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~-------~ 430 (662)
| |..+|.--..++- .....-.+++.+..-...+.+|--... .+...|+ .
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 1 2222221111110 011222333333322333333332222 2223333 3
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKG---EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM 507 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 507 (662)
+++..+++.....-..-+..+|..+...--..- ..+.....++++......--..+|..++....+..-+..|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555544222223444444433221111 24555666666654322222346777777777788889999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCC
Q 006071 508 KSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCII 584 (662)
Q Consensus 508 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (662)
.++.+.+..+ .....++++.-+ ..++..-|..+|+--+. .|..|.+ ...++.|...|+-..|+.+|++++....++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9998886666 455566666644 45677888888885544 6666664 356777778888888999999998874333
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 585 --DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 585 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
...+|..+++-=..-|+.+.++++-++....
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3678888888778889999999888886654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-05 Score=82.31 Aligned_cols=377 Identities=10% Similarity=-0.045 Sum_probs=225.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006071 167 MLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (662)
Q Consensus 167 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 245 (662)
....+...|++.++.......... +. ..............|+++.+...++.+.......+..........+...|
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 344455667776666544332211 00 01111122334556788877777766532111112223344455666789
Q ss_pred CHHHHHHHHHHHhhCC--C----CCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHH
Q 006071 246 RADDALRIFDEMKSFD--V----KPNAV--TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN----SVFMKLLGVQC 313 (662)
Q Consensus 246 ~~~~a~~~~~~~~~~~--~----~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 313 (662)
+++++..++......- . .+... ....+...+...|+++.|...++...... ...+. .....+...+.
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH
Confidence 9999999888775421 0 11111 12223345567899999999999987641 11122 23455666778
Q ss_pred hcCChHHHHHHHHHHHhCCC---CC--ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHH
Q 006071 314 KSGHLNAAADVLKAMIRLSI---PT--EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQ 388 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (662)
..|+++.|...+.+.....- .+ ...+...+...+...|+++.|...+++..+....... .........+..+..
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~ 581 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-EQLPMHEFLLRIRAQ 581 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHH
Confidence 89999999999988764311 11 1234455667788899999999999988765321100 000011223344555
Q ss_pred HHHhcCChhHHHHHHHHHHhcC---CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHH--hH--HHHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKG---VL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDAD--AY--ICLIE 457 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~ 457 (662)
.+...|++++|...+....... .+ ....+..+...+...|+++.|...+..+... ....... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6677899999999998876542 11 2334555677788899999999998887542 1111111 10 11224
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHH
Q 006071 458 SYLRKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEAL 529 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 529 (662)
.+...|+.+.|...+............ ..+..+..++...|++++|...++++... +... ...+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 455678999999888775432111111 11345566788899999999999988764 2222 123456677888
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 006071 530 LMRGHVEEALGRIDLMMQS 548 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~ 548 (662)
...|+.++|...+.+.++.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988863
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-08 Score=90.71 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=79.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH----hcCCh
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKGEP 465 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 465 (662)
+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+...++.++. -.+.+
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 33455666555555432 344555556666666667777776666666542 22 22222333222 22356
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q 006071 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV-EEALGRIDL 544 (662)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 544 (662)
.+|..+|+++.+ .+.++..+.+.+..++...|++++|.+++++....++. ++.++..++.+....|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 667777777654 34455666666666666677777777776666555444 455555566666666655 445556655
Q ss_pred HHh
Q 006071 545 MMQ 547 (662)
Q Consensus 545 ~~~ 547 (662)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-08 Score=91.79 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=122.1
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH
Q 006071 66 LGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA 145 (662)
Q Consensus 66 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 145 (662)
+.-.|++..++.-.+ ........+......+.+++...|+++.+.. ++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344556666554444 2221111123334444555556665554332 222211 34444443333333222333444
Q ss_pred HHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 146 KRYFNKMLSEGIEPTRHTY-NVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+.-+++....+..++..++ ......+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444433322222122122 22223344557777776666432 2556666666777777777777777777765
Q ss_pred CCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 006071 225 KNIEPTVISYTTMIKGYV----AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (662)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 300 (662)
.+ .| .+...++.++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+.... .|.
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~ 233 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPN 233 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CC
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccC
Confidence 42 22 22233333322 233567777777776543 3566666777777777777777777777776543 455
Q ss_pred cHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 006071 301 DNSVFMKLLGVQCKSGHL-NAAADVLKAMIR 330 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 330 (662)
++.+...++.+....|+. +.+.+.+.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666665 555566666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-06 Score=93.97 Aligned_cols=339 Identities=10% Similarity=0.023 Sum_probs=210.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------CC--hhhHHHHHHH
Q 006071 275 GLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIP------TE--AGHYGILIEN 346 (662)
Q Consensus 275 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~ 346 (662)
.....|+++.+..++..+..... ..++.........+...|+++++...+......--. +. ......+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~-~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVL-LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHH-hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34456777777777665422111 112333344555666789999999988877543111 11 1122223345
Q ss_pred HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCC--HHHHHHH
Q 006071 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLD--PVAFNNL 420 (662)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~l 420 (662)
+...|+++.|...++...+.. +...........+.+...+...|+++.|...++...... .+. ..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 462 AINDGDPEEAERLAELALAEL----PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 667899999999999886531 111000011234455566778999999999998887543 111 2345566
Q ss_pred HHHHHhcCChhHHHHHHHHHhh----CCCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCc--HHhHHH
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGR----RGVP--R-DADAYICLIESYLRKGEPADAKTALDSMIEDG--HSPA--SSLFRS 489 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~ 489 (662)
...+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 7788889999999999887654 2211 1 22344556667778899999999998876421 1121 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHH--H--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------HHHH
Q 006071 490 VMESLFEDGRVQTASRVMKSMVEKG--VKENLDL--V--AKILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSL 557 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 557 (662)
+...+...|+++.|...+..+.... ....... . ...+..+...|+.+.|.+.+........... ...+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 5556778999999999998886531 1111111 0 1122444568899999988776554211111 1234
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRD----CIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
..++...|+.++|..++++++... .... ...+..++.++.+.|+.++|.+.+.+.+.....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 556678899999999999887642 1111 234567888999999999999999998876543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-06 Score=83.11 Aligned_cols=215 Identities=17% Similarity=0.160 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHH
Q 006071 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAF 417 (662)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (662)
..-..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..+ .+|++..|
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~ly 460 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLY 460 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhH
Confidence 334456666777777777777777652 466677777777777777777776666 56666667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (662)
..+++......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHH
Confidence 66666655555555665555443221 11111111223455555555555544322 12334455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCHHHHHHHHH
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTIAAVKLLD 575 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~~A~~~~~ 575 (662)
++++.|.+.|...+...+. +...|+.+..+|.+.|+-.+|...+++..+.+..|- +.+.+....+-|.+++|++.+.
T Consensus 533 ek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 5555555555555544333 445555555555555555555555555555433322 2233334445555555555555
Q ss_pred HHhc
Q 006071 576 FCLG 579 (662)
Q Consensus 576 ~~~~ 579 (662)
+.++
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 4443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-06 Score=77.59 Aligned_cols=204 Identities=8% Similarity=-0.002 Sum_probs=145.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCh--
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP-- 465 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 465 (662)
.+...+..++|+.+..++++..|.+..+|+....++...| ++++++..++.+.+.+.+ +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3455678899999999999999888889988888888887 679999999998886544 666777666666666653
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CC----HHHH
Q 006071 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GH----VEEA 538 (662)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A 538 (662)
++++.+++++++.. +-+..+|.....++...|+++++++.++++++.++. |...|+....++.+. |. .+++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888888644 346778888888888889999999999999998877 666777666665554 22 2466
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHhc----cCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 006071 539 LGRIDLMMQSGSVPN----FDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (662)
Q Consensus 539 ~~~~~~~~~~~~~p~----~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (662)
+++.++++. ..|+ +..+..++.. .++..+|.+.+..++... ..++.....|++.|..
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 777766655 3444 3444555544 234566777777766643 2334445567777765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-06 Score=78.41 Aligned_cols=211 Identities=11% Similarity=0.086 Sum_probs=135.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (662)
+..++...+++++|+..++.+++.+ |.+..+|.....++...| ++++++..++++....++ +..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 3345566778888888888888876 677778887777777777 568888888888776554 566677666556566
Q ss_pred CCh--hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCH--
Q 006071 105 GIV--QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKL-- 177 (662)
Q Consensus 105 g~~--~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~-- 177 (662)
|+. +++...++.+.+.. +.+..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 653 56777777777654 456777887777777788888888888888776543 555666555444333 222
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc----CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 178 --ETAIRFFEDMKSRGISLDVVTYNTMINGYNRF----KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 178 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
++.......+....+ -|...|+.+...+... +...+|...+.+....+ +.+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 345555555555432 2566666666665552 23344666665554432 2344555556665553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00023 Score=72.14 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=156.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
..+++..|++....+++++ |....+-..-.-.+.+.|..++|..+++.....+.. |..+...+-..|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4678999999999999987 444433333344467999999999999987766555 8889999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-C---------HHHHH
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSL-K---------LETAI 181 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---------~~~a~ 181 (662)
.+|++.... -|+......+..+|.+.+.+.+-.++--++.+. .+-+...|=++++.....- . ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999999875 477777888888999988887766655555543 4445666656666554331 1 23355
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhhcCChHHHHHHHHH-HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 182 RFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFAE-MKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
..++.+.+.+ .--+..-....+..+...|++++|.+++.. ..+.-.+.+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5666666553 222223333344555677889999998843 33332233444445667778888899988888888887
Q ss_pred CC
Q 006071 260 FD 261 (662)
Q Consensus 260 ~~ 261 (662)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-06 Score=87.98 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=151.2
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW-----DEDMFEVLIESYGKKGIVQESVKIFDI 116 (662)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 116 (662)
-|+.....+ |.+...|-..+......++.+.|+.++++.... +.+ -..+|.+++..-..-|.-+...++|++
T Consensus 1446 Dferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344444444 667777877787778888888888888776653 111 124666666666666777777777877
Q ss_pred HHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C
Q 006071 117 MKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISL-D 195 (662)
Q Consensus 117 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 195 (662)
+.+.. ..-..|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.++.+.=+.- .
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 77632 23345667777777778888888888877665 33456677777777777777777777777777651110 1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHH
Q 006071 196 VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA--VTYTALL 273 (662)
Q Consensus 196 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll 273 (662)
.....-.+..-.+.|+.+++..+|+..... .|.-...|+..+..-.+.|+.+.+..+|+++...++.|-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 233334445556677777777777777654 2345667777777777777777777777777776655432 2344444
Q ss_pred HHHHhCCCHHH
Q 006071 274 PGLCDAGKMVE 284 (662)
Q Consensus 274 ~~~~~~g~~~~ 284 (662)
..--..|+-..
T Consensus 1679 eyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1679 EYEKSHGDEKN 1689 (1710)
T ss_pred HHHHhcCchhh
Confidence 43334444333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00016 Score=68.88 Aligned_cols=130 Identities=9% Similarity=0.145 Sum_probs=83.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
+|...+....+..-...|..+|.++.+.. ..+..+.++++..+|. ++..-|..+|+.-.+. +..++.--...+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 56666666666667777777777777666 2355566666665553 5667777777764443 223444445666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
...++-..+..+|++.+..++.|+ ...|..+++--..-|+...+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 777777777777777776655544 356777777666777777777777666544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-06 Score=82.57 Aligned_cols=214 Identities=12% Similarity=0.154 Sum_probs=112.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (662)
.+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+..+. +|++..|..+.+.....
T Consensus 403 ~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3444455555555555555543 23444555566666666665555555542 45555555555555555
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (662)
.-+++|.++.+....+ .-..+.......+++.++...|+...+..+....+|-.+..+..+.+++
T Consensus 471 s~yEkawElsn~~sar---------------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR---------------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred HHHHHHHHHhhhhhHH---------------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 5555555555544211 0111111122345566666666666655555556666666666666666
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
+.|.+.|....... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 66666665555532 2234556666666666666666666666665544 333344444444555556666666666655
Q ss_pred HHc
Q 006071 511 VEK 513 (662)
Q Consensus 511 ~~~ 513 (662)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-06 Score=85.57 Aligned_cols=220 Identities=12% Similarity=0.154 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (662)
+...+..++..+...+++++|.++.+...+. .|.....+..++..+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3455666666666777777777777755553 454555555555555555554444333 1 22
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH 424 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (662)
.......++.....++..+.+.+ -+...+..+..+|.+.|+.+++..+++++.+..+.|+.+.|.+...|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 22223333333333333332211 12235566677777777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHH
Q 006071 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTA 503 (662)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 503 (662)
+.. ++++|.+++.++... +...+++..+.++|.++.... |+. ..+..
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~-------------- 208 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLR-------------- 208 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHH--------------
Confidence 777 777777777666553 455566777777777776532 222 22222
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 504 SRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 504 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+.+.+... +..--..++..+...|...++|++++.+++.+++
T Consensus 209 --i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 209 --IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred --HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 22222222 2222344555566667777778888888888877
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-06 Score=79.15 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA---DAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
..+..+..++..+...|++++|...++.+...... +. ..+..+..++...|++++|...++++.+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555555566666666666555543211 11 3444555555555666666666665554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-06 Score=85.50 Aligned_cols=206 Identities=12% Similarity=0.133 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK----DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
+...|...|......++.++|.++.++++.. +.+. -..+|.++++.-..-|.-+...++|+++.+. ......|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3455666666666667777777777666654 1111 1235556666555666666666666666653 2233445
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CHHHHH
Q 006071 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL--DPVAFN 418 (662)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 418 (662)
..|...|.+.+.+++|.++++.|+++.. .....|...+..+.++++-+.|..++.++++.-|. ......
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~---------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG---------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc---------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 6666666666666666666666665431 12345666666666666666666666666655433 444555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006071 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (662)
Q Consensus 419 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 483 (662)
..++.-.+.|+.+++..+|+...... |-....|+.+++.-.++|+.+.+..+|++.+..++.|-
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 55555666666666666666665542 22456666666666666666666666666666555543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-06 Score=77.98 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=123.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H
Q 006071 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--D 520 (662)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 520 (662)
.....+..++..+...|++++|...++++.... |+ ...+..+..++...|++++|...++++++..+.... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456777888888999999999999999988643 33 235667778889999999999999999887554222 2
Q ss_pred HHHHHHHHHHhC--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHH
Q 006071 521 LVAKILEALLMR--------GHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (662)
Q Consensus 521 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (662)
.+..+..++... |++++|++.++++.. ..|+......++...+..... . ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~~~~~---~-----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDYLRNR---L-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHH---H-----------HHHHHHH
Confidence 455566666654 678888888888886 334322111111111111110 0 0111256
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--CcHhhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 593 LDALLAAGKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
+..+.+.|++.+|+..+++.+..... .....+..++.++.+.|++++|....+.+.+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77788888888888888888776432 23456677888888888888887666666543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-06 Score=72.41 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=89.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
|.+..+ ......+...|+-+....+........ +.+.......+....+.|++..|...|.+..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334444 455555555565555555555543322 2244455555666666666666666666665533 4555666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
.-+|.+.|+++.|..-|.+..+.- .-++..++.+.-.+.-.|+++.|..++......+.. |..+-..+..+....|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 666666666666666666665541 223344445555555556666666666665554222 455555555555666666
Q ss_pred HHHHHHHHH
Q 006071 213 DEAEKLFAE 221 (662)
Q Consensus 213 ~~a~~~~~~ 221 (662)
+.|.++...
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 666655444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5e-06 Score=71.64 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (662)
|.+..+ ..+-..+...|+-+....+....... .+.|......++....+.|++..|...+.+... .-++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHH
Confidence 334444 44444455555555555554443322 122444444455555555666666666655554 234455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCHH
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTI 568 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~ 568 (662)
..+|.+.|+++.|..-|.+..+..+. ++..++.+...|.-.|+.+.|..++......+..+. ...+.......|++.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 55556666666666555555555333 333445555555555555555555555544332222 123444444555555
Q ss_pred HHHHHHH
Q 006071 569 AAVKLLD 575 (662)
Q Consensus 569 ~A~~~~~ 575 (662)
+|..+..
T Consensus 220 ~A~~i~~ 226 (257)
T COG5010 220 EAEDIAV 226 (257)
T ss_pred HHHhhcc
Confidence 5555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.4e-06 Score=85.89 Aligned_cols=238 Identities=14% Similarity=0.066 Sum_probs=147.3
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+..++..+...+++++|.++.+...+..|.....|-.++..+...++.+.+..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 4456788889998999999999999988888877777777777777777776666555 222 22
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
.....++.-...+.+.+...+ -+...+..+..+|.+.|+.++|..+|+++++.++. |+...+.++..|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 223333333333333443322 23446667777777888888888888888877755 677777788777777 88888
Q ss_pred HHHHHHHHhCCC---CCC-HHHHHHHHhc--cCCHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 539 LGRIDLMMQSGS---VPN-FDSLLSVLSE--KGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 539 ~~~~~~~~~~~~---~p~-~~~~~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
++++.+.+..-+ .++ ...+..-++. .-+++.=.++.++.... +..--...+..+...|-..+++++++++|+.
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 887777665211 111 1111111111 22334444444433333 1111233444555666677889999999999
Q ss_pred HHHcCCCCcHhhHHHHHHHHHhcCCcchh
Q 006071 612 IMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 640 (662)
+++.... +..+...++.||+ +++.+-
T Consensus 249 iL~~~~~-n~~a~~~l~~~y~--~kY~~~ 274 (906)
T PRK14720 249 ILEHDNK-NNKAREELIRFYK--EKYKDH 274 (906)
T ss_pred HHhcCCc-chhhHHHHHHHHH--HHccCc
Confidence 9987654 4444566888877 444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-05 Score=68.03 Aligned_cols=249 Identities=12% Similarity=0.120 Sum_probs=136.4
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChh
Q 006071 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM 143 (662)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 143 (662)
+-+.-.|++..++..-+...... -+...-..+.++|...|++.....-...-. .|.......+...+..-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhH
Confidence 34445566666665555443321 233444445566666666554433222221 233333333333333333333
Q ss_pred HHH-HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006071 144 MAK-RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (662)
Q Consensus 144 ~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 222 (662)
.-+ ++.+.+.......+......-...|++.|++++|.+...... +......=...+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 333444333222232223333345667777777777765521 3344444445556677777777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 006071 223 KEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIP 298 (662)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 298 (662)
.+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+.+ .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d 237 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--D 237 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--c
Confidence 7642 55566666665543 34577777788887653 3677777777777777888888888888887776 4
Q ss_pred CCcHHHHHHHHHHHHhcCChHH-HHHHHHHHHh
Q 006071 299 PKDNSVFMKLLGVQCKSGHLNA-AADVLKAMIR 330 (662)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 330 (662)
++++.+...++.+....|.... ..+.+.++..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 5566666666665555554433 3344444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-06 Score=86.64 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHH-HHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 006071 413 DPVAFNNLIRGHSKEGNPDSAF-EIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
++...+.+=.+.+..|..++|- +++.++.+ ++..........+++.-+..... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 4444444445555566666553 33333322 22222333333333333333333 3445577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCH
Q 006071 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKT 567 (662)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~ 567 (662)
......|.+++|..+++.+.+..+. +......++.++.+.+++++|+..+++.+. ..|+. ..+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 8888999999999999999887666 566677788889999999999999988887 55553 2355667788999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLI 628 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 628 (662)
++|..+|++++..+ +.+...+..++..|...|+.++|...|++..+.... -.+.|+.++
T Consensus 171 ~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH
Confidence 99999999998844 344666777888999999999999999998876442 224444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.3e-06 Score=71.57 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=107.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 006071 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (662)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++..++.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457777887776444432221 11 0122366778888888888887766 788888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHH-hccCC--HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006071 536 EEALGRIDLMMQSGSVPNF----DSLLSVL-SEKGK--TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSI 608 (662)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~~----~~~~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
++|+..+++... ..|+. ..++.++ ...|+ .++|.++++++++.++. +...+..++..+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998887 44542 2344543 45566 58999999999998754 455666789999999999999999
Q ss_pred HHHHHHcCCCCc
Q 006071 609 LFKIMEKGGVTD 620 (662)
Q Consensus 609 ~~~~~~~~~~~~ 620 (662)
++++++...+.+
T Consensus 167 ~~~aL~l~~~~~ 178 (198)
T PRK10370 167 WQKVLDLNSPRV 178 (198)
T ss_pred HHHHHhhCCCCc
Confidence 999988765433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-05 Score=65.11 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=83.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCC
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGE 464 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 464 (662)
.|+..+++++|+...... .+......=+..+.+..+++-|...++.|.+.. +..|.+.|..++.+ .+.
T Consensus 117 i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchh
Confidence 455566666666555441 122222223344455566667777777776632 44555555555543 245
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHH
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL-GRID 543 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 543 (662)
..+|.-+|++|-+ ...|+..+.+....++...|++++|..+++.++..... ++.+...++.+-...|...++. +.+.
T Consensus 189 ~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6667777777764 24566666666666667777777777777777766554 4555554555444555443333 3444
Q ss_pred HHHh
Q 006071 544 LMMQ 547 (662)
Q Consensus 544 ~~~~ 547 (662)
++..
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 4443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-06 Score=74.46 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=68.6
Q ss_pred cCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HHcCC--hhHH
Q 006071 69 VGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI-LRRGR--YMMA 145 (662)
Q Consensus 69 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~g~--~~~A 145 (662)
.++.+++...++...+.++. +...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554433 56666666666666666666666666666544 33555555555543 44454 3666
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 146 KRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.+++++..+.++. +...+..+...+...|++++|...|+.+.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655322 4555555555666666666666666666655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0016 Score=66.32 Aligned_cols=507 Identities=13% Similarity=0.068 Sum_probs=277.7
Q ss_pred CCCCChHHHHH--HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHH
Q 006071 18 VPQFDHNLVYN--VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFE 95 (662)
Q Consensus 18 ~~~~~~~~l~~--~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 95 (662)
-|+..+..++. ++.+.|+.++|..+++...... +.|..++..+-.+|...++.++|..+|++..... |+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHH
Confidence 45556666666 4558999999998888776554 5688899999999999999999999999998764 5588888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC----------hhHHHHHHHHHHhCC-CCcCHHHH
Q 006071 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR----------YMMAKRYFNKMLSEG-IEPTRHTY 164 (662)
Q Consensus 96 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~-~~~~~~~~ 164 (662)
.+..+|.|.+++..-.+.=-++-+ ..+.++..+=++++.+.+... ..-|.+.++.+.+.+ ..-+..-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 888899998887664444333333 223444444445555444211 223556666766553 22222223
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH--
Q 006071 165 NVMLWGFFLSLKLETAIRFFE-DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY-- 241 (662)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 241 (662)
......+-..|++++|..++. .....-..-+...-+.-+..+...+++.+..++-.++...| +|- |...+..+
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~k 269 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFK 269 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHH
Confidence 333344557789999999983 33333333355555677888889999999999999988875 232 22222211
Q ss_pred --------------HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHcCCCCCcHHH
Q 006071 242 --------------VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL---CDAGKMVEVQKVLREMVERYIPPKDNSV 304 (662)
Q Consensus 242 --------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 304 (662)
...+..+...+..++...... .+ .|.+-+.+. ...|+.+++...|-+-. |..| .
T Consensus 270 lLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~-Rg--p~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp----c 340 (932)
T KOG2053|consen 270 LLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS-RG--PYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP----C 340 (932)
T ss_pred HHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc-cC--cHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc----H
Confidence 111223333333333332211 11 222222222 34577777554443321 1111 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHcCC-----cHHHHHHHHHHHHHhhhhc-c
Q 006071 305 FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG-------HYGILIENFCKAE-----MYDRAIKLLDKLVEKEIIL-R 371 (662)
Q Consensus 305 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~-~ 371 (662)
+..=+..|...=..+.-..++....... ++.. .+...+..-.-.| .-+....++.+........ .
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls 418 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS 418 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc
Confidence 2222222222222233333333332211 1111 0111111111112 1222233332222111000 0
Q ss_pred CCCCCCCcccc---------HHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 372 PQSTLDMEASS---------YNPMIQHLCHNGQTG---KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (662)
Q Consensus 372 ~~~~~~~~~~~---------~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 439 (662)
-..+.-|+..+ -+.+++.+.+.++.. +|+-+++......+.|..+--.+++.|+-.|-+..|.+++..
T Consensus 419 ~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~t 498 (932)
T KOG2053|consen 419 LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKT 498 (932)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHh
Confidence 11222233322 245667777777654 566777777777788888889999999999999999999999
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH---HHHHcCCC
Q 006071 440 MGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMK---SMVEKGVK 516 (662)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~ 516 (662)
+.-.++..|...|.. ..-+...|++..+...++...+- +..+..--...+....+.|.+....++.. ++......
T Consensus 499 LdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~ 576 (932)
T KOG2053|consen 499 LDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQK 576 (932)
T ss_pred cchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHH
Confidence 877667666554433 34455667887777777665532 11111111222333345566665544432 22221111
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 517 ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 517 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
....+-+.++..++..++++.-...+..+.
T Consensus 577 ~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 577 WACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 122333566777778888877777766554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=53.76 Aligned_cols=30 Identities=53% Similarity=0.804 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 006071 192 ISLDVVTYNTMINGYNRFKKMDEAEKLFAE 221 (662)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 221 (662)
+.||..+|++|+++|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 333444444444444444444444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00015 Score=62.20 Aligned_cols=190 Identities=14% Similarity=0.122 Sum_probs=102.5
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCcccc-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASS-YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (662)
.+.++..+++..+..... .....++..+ |..++-+....|+.+.|...++.+....|.+..+-..-...+-..|+
T Consensus 26 rnseevv~l~~~~~~~~k----~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSK----SGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhh----hcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc
Confidence 345666666666544321 1112222221 23334444556666667666666666655555554444445555666
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (662)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (662)
+++|.++++.+.+.+ +.|..++--=+...-..|+.-+|++-+.+..+ -+..|...|..+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666654 33555555444445555555566666666555 3455666666666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Q 006071 510 MVEKGVKENLDLVAKILEALLMRG---HVEEALGRIDLMMQ 547 (662)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 547 (662)
++-..|. ++..+..+...+.-.| +.+-|.++|.+.++
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6554333 3444444544444333 34445555555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.7e-05 Score=76.63 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
..+..+.......|..++|..+++.+.+..|.+......++..+.+.+++++|+..++......+. +......+..++.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~ 165 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555555555555555555555444322 3444444445555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+..++.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554411 122344444444555555555555555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00017 Score=68.18 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=93.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (662)
-.+...|++++|...++.++.. .+-|...+......+.+.|+..+|.+.++.++...+.. ...+-.+..+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChH
Confidence 3344567777777777777653 22334444445556777777777777777777664442 444555777777777777
Q ss_pred HHHHHHHHHHh-CCCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 537 EALGRIDLMMQ-SGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 537 ~A~~~~~~~~~-~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
+|+..++.... .+..|+ |..+..+|...|+..+|... .++.|...|++++|+..+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777776654 344444 45566677777766665433 34455667777777777777665
Q ss_pred cC--CCCcHhhHHHHHH
Q 006071 615 KG--GVTDWKSSDKLIA 629 (662)
Q Consensus 615 ~~--~~~~~~~~~~l~~ 629 (662)
.. +.++|.-+...+.
T Consensus 454 ~~~~~~~~~aR~dari~ 470 (484)
T COG4783 454 QVKLGFPDWARADARID 470 (484)
T ss_pred hccCCcHHHHHHHHHHH
Confidence 43 3345554444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=53.25 Aligned_cols=32 Identities=47% Similarity=0.930 Sum_probs=20.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 226 NIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (662)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (662)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.2e-06 Score=67.59 Aligned_cols=92 Identities=8% Similarity=-0.093 Sum_probs=47.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC
Q 006071 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG 140 (662)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 140 (662)
....++...|++++|...|+......+. +...|..+..++.+.|++++|...|+.....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444455555555555555555544332 44555555555555555555555555555443 234445555555555555
Q ss_pred ChhHHHHHHHHHHh
Q 006071 141 RYMMAKRYFNKMLS 154 (662)
Q Consensus 141 ~~~~A~~~~~~~~~ 154 (662)
++++|+..|+..+.
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00035 Score=66.14 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHH
Q 006071 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (662)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (662)
+...|.++.|+..++.+... .+-|+..+......+...++..+|.+.+++++.. .|........+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 33445555555555554443 1223333333444445555555555555555543 34334444445555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 006071 321 AADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360 (662)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 360 (662)
|..+++...... +.++..|..|.++|...|+..++....
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555544432 444555555555555555544444333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00019 Score=61.57 Aligned_cols=187 Identities=15% Similarity=0.165 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHhh---CC-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 245 ERADDALRIFDEMKS---FD-VKPNAV-TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 245 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
.+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+..+ .|.+..+...-...+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence 445666666655542 22 334433 2344455556667777777777776665 2545554444444555566677
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
+|+++++.+...+ |.|..++-.-+...-..|+.-+|++-+...++.. ..|...|.-+...|...|++++|
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---------~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---------MNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHhHhHHHHH
Confidence 7777777666654 4445555544545555555555555555554433 23555666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEG---NPDSAFEIVKIMGRR 443 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 443 (662)
...++.+.-..|.++..+..+...+.-.| +.+.+.++|.+..+.
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66666666666666655555555544333 344555566555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00015 Score=66.63 Aligned_cols=174 Identities=17% Similarity=0.097 Sum_probs=94.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHH
Q 006071 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (662)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (662)
+.+..++.+|+..+...++.. +.+..-|..-+..+...|+++.+.--.+.-++ ++|..........+++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHHH
Confidence 445566667777776666653 33344444445555556666666555444433 233334444444445555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHH-HHHHhcCChhHH
Q 006071 321 AADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI-QHLCHNGQTGKA 399 (662)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a 399 (662)
|...++.- ..+ ....++..++... +.....|...+|..+- .++...++.++|
T Consensus 136 A~~~~~~~---------~~~-----------~~anal~~~~~~~-------~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 136 AEEKLKSK---------QAY-----------KAANALPTLEKLA-------PSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred HHHHhhhh---------hhh-----------HHhhhhhhhhccc-------ccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 55444410 000 1112222222221 1122223334444432 345667888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
...--.+++..+.+......-..++...++.+.+...|++....+
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 888888888876666666555566667788888888888887753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-05 Score=62.90 Aligned_cols=87 Identities=7% Similarity=-0.020 Sum_probs=33.1
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 206 YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEV 285 (662)
Q Consensus 206 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 285 (662)
+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+..++..+..++...|++++|
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 333344444444444433321 2233333333344444444444444444433321 22333333333333444444444
Q ss_pred HHHHHHHHH
Q 006071 286 QKVLREMVE 294 (662)
Q Consensus 286 ~~~~~~~~~ 294 (662)
...|+..+.
T Consensus 112 i~~~~~Al~ 120 (144)
T PRK15359 112 REAFQTAIK 120 (144)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=65.63 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=72.8
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006071 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (662)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 121 (662)
.|+.++..+ |.+......++..+...|++++|...|+.+...++. +...+..+...+...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555554 445566666667777777777777777776665432 66667777777777777777777777766654
Q ss_pred CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
+.+...+..+...+...|++++|...|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666666777777777777777776664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-05 Score=63.01 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHhccCCHHH
Q 006071 497 DGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD-----SLLSVLSEKGKTIA 569 (662)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~~~g~~~~ 569 (662)
.++...+...++.+.+..+... ....-.+...+...|++++|...|+.+......|... .+..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666776666543321 1222335566667777777777777776644333321 24445556777777
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
|+..++..... ...+..+...+++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777642221 223445556777777777777777777653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-05 Score=63.75 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA---SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLD--LVAKI 525 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l 525 (662)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+.. ....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 444444444 3677777777777777643 122 1223334456777888888888888887765443322 23446
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHhccCCHHHHHHHHHHHh
Q 006071 526 LEALLMRGHVEEALGRIDLMMQSGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCL 578 (662)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~ 578 (662)
..++...|++++|+..++.+...+..|.. ...++++...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77778888888888887665443344432 345667778888888888887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00028 Score=57.38 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=108.1
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---CCCC-HHH
Q 006071 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG---SVPN-FDS 556 (662)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~ 556 (662)
.|....-..+..++.+.|++.+|...|++...--..-+....-.+.++....+++.+|...++++.+.+ -.|+ .-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 477777778888999999999999999999876666688888889999999999999999999998733 3444 234
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
+...|...|++++|...|+.+++..+.+....| .+..+.++|+..+|...+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHH
Confidence 677888999999999999999988766666655 57888999999988777666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.7e-05 Score=60.97 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 006071 453 ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR 532 (662)
Q Consensus 453 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (662)
..+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.++. +...+..+..++...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 333444444444444444444444321 122333334444444444444444444444443322 333333344444444
Q ss_pred CCHHHHHHHHHHHHh
Q 006071 533 GHVEEALGRIDLMMQ 547 (662)
Q Consensus 533 g~~~~A~~~~~~~~~ 547 (662)
|++++|+..+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0072 Score=55.64 Aligned_cols=256 Identities=15% Similarity=0.179 Sum_probs=154.9
Q ss_pred cCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 006071 349 KAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG 428 (662)
Q Consensus 349 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 428 (662)
-.|+++.|.+-|+.|.+.. + .-...+..+.-...+.|..+.|.++-+......+.-+..+...+...+..|
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-----E----tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-----E----TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-----H----HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 3466666666666664321 0 000112233333345677777777777777776767777788888888888
Q ss_pred ChhHHHHHHHHHhhC-CCCCCHHh--HHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHH
Q 006071 429 NPDSAFEIVKIMGRR-GVPRDADA--YICLIESYL---RKGEPADAKTALDSMIEDGHSPASS-LFRSVMESLFEDGRVQ 501 (662)
Q Consensus 429 ~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 501 (662)
+++.|+++++.-... -+.++..- -..|+.+-. -.-++..|...-.+..+ +.||.. .......++.+.|+..
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchh
Confidence 888888888765542 23333321 111222111 12345566666555553 456533 2334456788999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCHH----HHHHHHhccCCHHHHHHHHHH
Q 006071 502 TASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFD----SLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 502 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~----~~~~~~~~~g~~~~A~~~~~~ 576 (662)
++-.+++.+-+..+.|+.. .+..+.+.|+. ++.-+++... ...+|+.. ++..+-...|++..|..-.+.
T Consensus 281 Kg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 281 KGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred hhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999998877666443 22334555643 3333333322 23666632 344455567899888888886
Q ss_pred HhcCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCcHhh
Q 006071 577 CLGRDCIIDLASYEKVLDALLAA-GKTLNAYSILFKIMEKGGVTDWKS 623 (662)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 623 (662)
+... .|....|..|+++-... |+-.++...+-+.+..+-.|.|..
T Consensus 355 a~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 355 AARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred Hhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 6665 45566677777777664 999999999999888777776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00013 Score=69.77 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (662)
....|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++.++. .+-+...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34556666677788888888888887753 33 4445777777778888888888888863 2335555666666778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
..++++.|..+.+++....+. +..+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888887555 67788888888888888888888777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00019 Score=68.60 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=62.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006071 131 ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFK 210 (662)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 210 (662)
.++..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +-+......-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555555666665555432 232 2234444444555555555555555432 224444444455555566
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 211 KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
+++.|..+.+++.... |-+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666655541 2233356666666666666666665555553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00018 Score=57.86 Aligned_cols=96 Identities=10% Similarity=-0.087 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006071 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (662)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (662)
+......+...+...|++++|..+|+-+.. +.|.. -.++-.+...|++++|+..+.++...++ .++..+..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 344555677788899999999999998887 55553 3456666778999999999999998874 5566666799
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006071 594 DALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
.++...|+.+.|.+-|+..+...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.013 Score=54.02 Aligned_cols=256 Identities=15% Similarity=0.107 Sum_probs=142.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcHHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH
Q 006071 278 DAGKMVEVQKVLREMVERYIPPKDNSVF----MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMY 353 (662)
Q Consensus 278 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 353 (662)
-.|+++.|.+-|+.|.. ++.+. ..|.-...+.|+.+.|..+-+...... +.-...+...+...|..|+|
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35666666666666654 22221 112222234566666666655554432 33344556666666777777
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCccc--cHHHHHHHHH---hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 006071 354 DRAIKLLDKLVEKEIILRPQSTLDMEAS--SYNPMIQHLC---HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG 428 (662)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 428 (662)
+.|+++++...+.... .++.. .-..++.+-. -..+...|...-....+..+.-...-..-..++.+.|
T Consensus 205 d~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 205 DGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 7777776665443321 11111 1111222111 1234555666555555555444444555667788889
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCc-HHhHHHHHHHHHhcCCHHHHHHH
Q 006071 429 NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED-GHSPA-SSLFRSVMESLFEDGRVQTASRV 506 (662)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 506 (662)
+..++-.+++.+-+.. |.+..+..++ +.+.| +.++.-+++..+. .++|| ......+..+....|++..|..-
T Consensus 278 ~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 278 NLRKGSKILETAWKAE--PHPDIALLYV--RARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred chhhhhhHHHHHHhcC--CChHHHHHHH--HhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999888864 4444333322 23444 3344444443321 23444 45555666777788888888776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 507 MKSMVEKGVKENLDLVAKILEALL-MRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
-+.... ..|....|..+...-. ..|+-.++.+.+-+.+..+-+|.+.
T Consensus 352 Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 352 AEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred HHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 666554 3556666665655543 4488888888888888888888753
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00066 Score=62.68 Aligned_cols=260 Identities=11% Similarity=-0.034 Sum_probs=153.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 468 (662)
.+.+...+..|+..+..+++..|.+..-|..-+..+...+++++|.--.+.-.+.... ....+.-.-.++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 3456677788888888888888777777776667777777777776666554442111 111222222333333333333
Q ss_pred HHHHH---------------HHHHcCC-CCcHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006071 469 KTALD---------------SMIEDGH-SPASSLFRSVME-SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (662)
Q Consensus 469 ~~~~~---------------~~~~~~~-~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (662)
.+.++ ....... +|.-.++..+-. .+.-.|++++|...--..++.+.. +......=..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccccc
Confidence 32222 1111111 133334433322 345678888888877777766444 33333223334556
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHhccCCHHHHHHHHHHHhcCCCCCC---hhhHHHH
Q 006071 532 RGHVEEALGRIDLMMQSGSVPNFDSL----------------LSVLSEKGKTIAAVKLLDFCLGRDCIID---LASYEKV 592 (662)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~~~----------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 592 (662)
.++.+.|+..+++.+. ..|+.... +.-..+.|++..|.+.+..++..+|.+. ...|...
T Consensus 216 ~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 6777888888887776 55552211 1223467888888888888888765542 4456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhccc
Q 006071 593 LDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (662)
+-+..+.|+..+|+.-.+..+.... .-...+..-..|+...++|++|..-.+...+...+
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777788888888888877776532 34445555666777788888886555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.021 Score=53.97 Aligned_cols=435 Identities=14% Similarity=0.143 Sum_probs=209.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHh
Q 006071 172 FLSLKLETAIRFFEDMKSRGISLDV------VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG--YVA 243 (662)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 243 (662)
-+.+++.++..+|.++.+..-. +. ..-+.++++|.. ++.+.....+....+. .| ...|-.+..+ +.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 4678899999999888765221 21 223455666654 5566666666666553 23 3344444443 347
Q ss_pred cCCHHHHHHHHHHHhhC--CCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCcHHHH
Q 006071 244 VERADDALRIFDEMKSF--DVKPN------------AVTYTALLPGLCDAGKMVEVQKVLREMVERYIP----PKDNSVF 305 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 305 (662)
.+.+.+|++.+..-... +-.|. -..-+..+.++...|++.++..+++++...-++ - +..+|
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w-~~d~y 170 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW-NSDMY 170 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc-cHHHH
Confidence 78888888887766543 21221 111134456677888999988888888775333 3 66677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCC---------cHHHHHHHHHHHHHhhhhccCCCC
Q 006071 306 MKLLGVQCKSGHLNAAADVLKAMIRLS-IPTEAGHYGILIENFCKAE---------MYDRAIKLLDKLVEKEIILRPQST 375 (662)
Q Consensus 306 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~ 375 (662)
+.++-.+.++ +|-++.+.. ...-+. |..++-.|.+.= .+.-...++..+.+.-... |...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~-p~e~ 240 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV-PKER 240 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC-CHhh
Confidence 7665555442 233332211 111112 222333332211 1111223333332221111 2222
Q ss_pred CCCccc------------cHHHHHHHHHh--cCChhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 376 LDMEAS------------SYNPMIQHLCH--NGQTGKAEIFFRQLMKKG-----VLDPVAFNNLIRGHSKEGNPDSAFEI 436 (662)
Q Consensus 376 ~~~~~~------------~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 436 (662)
.+|-.. .+..++..... ..+.+++..+.+.+.... ..-..++..++....+.++...|.+.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 221111 11122222111 114444444444433332 11223455566666666677777666
Q ss_pred HHHHhhCCCCCCHHhHH-------HHHHHHHhc----CChHHHHHHHHHHHHcCCCCcHHhHHHHH---HHHHhcCC-HH
Q 006071 437 VKIMGRRGVPRDADAYI-------CLIESYLRK----GEPADAKTALDSMIEDGHSPASSLFRSVM---ESLFEDGR-VQ 501 (662)
Q Consensus 437 ~~~~~~~~~~~~~~~~~-------~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~ 501 (662)
+..+.... |+...-. .+-+..+.. -+...=+.+|+.....++.- ......++ .-+.+.|. -+
T Consensus 321 l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 321 LALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccH
Confidence 66665532 3332211 122222211 12223344444444332211 11111222 23445555 67
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhC---CCHHHHHHHHHHHHhCCCCCC---HHHHHHH------HhccC
Q 006071 502 TASRVMKSMVEKGVKENLDLVAKILE----ALLMR---GHVEEALGRIDLMMQSGSVPN---FDSLLSV------LSEKG 565 (662)
Q Consensus 502 ~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~~~~~~~~~~~p~---~~~~~~~------~~~~g 565 (662)
+|+.+++.+++.... |..+-+.+.. +|.++ ..+.+-+.+-+-+.+.|+.|- ...+.+. +...|
T Consensus 398 kalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 777777777665222 3333332221 22211 123333333333444566664 1223332 23578
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLI 628 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 628 (662)
++.++.-+-.-..+- .|++..|..+|-+++...++.+|.+++..++......+....-.++
T Consensus 477 ey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~ 537 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALA 537 (549)
T ss_pred cHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 888887776655554 4577888888888888888888888888866543333444333333
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.7e-05 Score=58.14 Aligned_cols=78 Identities=19% Similarity=0.105 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHH
Q 006071 564 KGKTIAAVKLLDFCLGRDCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADI 642 (662)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (662)
+|++++|+.+++++++..+.. +...+..++.+|++.|++++|++++++ ..... ........+..+|.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 345555555555555554321 233333455555555555555555555 21111 122222234555555555555543
Q ss_pred H
Q 006071 643 L 643 (662)
Q Consensus 643 ~ 643 (662)
.
T Consensus 80 ~ 80 (84)
T PF12895_consen 80 A 80 (84)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0006 Score=52.95 Aligned_cols=91 Identities=22% Similarity=0.088 Sum_probs=62.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHhccCCHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF-----DSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALL 597 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 597 (662)
+..++-..|+.++|+.+|++....|..... ..+...+...|++++|..++++.+...+.. +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 566677778888888888887776665542 235666777888888888888777764431 2222334667778
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006071 598 AAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~ 615 (662)
..|++++|++.+-..+..
T Consensus 87 ~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE 104 (120)
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 888888888888776653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0045 Score=57.73 Aligned_cols=143 Identities=20% Similarity=0.146 Sum_probs=78.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHc--CC-CC--CHHHHHHHHHHH
Q 006071 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED-GRVQTASRVMKSMVEK--GV-KE--NLDLVAKILEAL 529 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~--~~-~~--~~~~~~~l~~~~ 529 (662)
+..|...|++..|-.++..+ ...|... |+++.|++.|+++.+. .. .+ -..++..++..+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 34455555555554444443 3456666 7888888888887764 11 11 133456677788
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC-----HH-HHH---HHHhccCCHHHHHHHHHHHhcCCCCC--C--hhhHHHHHHHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPN-----FD-SLL---SVLSEKGKTIAAVKLLDFCLGRDCII--D--LASYEKVLDAL 596 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~-----~~-~~~---~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~~l~~~~ 596 (662)
.+.|++++|+++|+++.......+ .. .++ -.+...|+...|...+++.....+.- + ......++.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 888888888888888876432222 11 111 12235788888888888777654322 2 22233444444
Q ss_pred Hh--cCCHHHHHHHHHHHH
Q 006071 597 LA--AGKTLNAYSILFKIM 613 (662)
Q Consensus 597 ~~--~g~~~~A~~~~~~~~ 613 (662)
-. ...+.+|+.-++++.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 33 345666666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=57.16 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
....+...+...|++++|..+|+.+...++. +..-|..|..++-..|++++|+..|....... +.++..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344444445555555555555555544332 44455555555555555555555555555544 244445555555555
Q ss_pred HcCChhHHHHHHHHHHh
Q 006071 138 RRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~ 154 (662)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00047 Score=54.82 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC--ChhhHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVL 593 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 593 (662)
++..++..+.+.|++++|.+.++.+.... ..|. ...++.++...|++++|..+++.++...+.. .+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445566666677777777776666521 1111 1224556666677777777777666654332 134455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006071 594 DALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
.++.+.|++++|.+.++++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777777664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.6e-05 Score=45.14 Aligned_cols=33 Identities=33% Similarity=0.701 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.2e-05 Score=44.85 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 483 (662)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.7e-05 Score=55.79 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
.|+++.|+.+|+.+.+..+..++...+..++.++.+.|++++|..+++. .+.+.. +......+..++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4778888888888887762112455666678888888888888888877 332221 33455555777888888888888
Q ss_pred HHHH
Q 006071 113 IFDI 116 (662)
Q Consensus 113 ~~~~ 116 (662)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0091 Score=53.86 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=97.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-h---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 455 LIESYLRKGEPADAKTALDSMIEDGHSPASS-L---FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
....+...|++++|...|+.+.... |+.. . ...+..++.+.++++.|...+++.++..+.-...-+.....+++
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3444556677777777777777532 2221 1 23445566777777777777777777643322222222222221
Q ss_pred --hCC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHH
Q 006071 531 --MRG---------------H---VEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYE 590 (662)
Q Consensus 531 --~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 590 (662)
..+ + ..+|++.++++++ .-|+.. -..+|...+..+-+. . ...-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S~----------ya~~A~~rl~~l~~~---l-a~~e~ 179 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNSQ----------YTTDATKRLVFLKDR---L-AKYEL 179 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCCh----------hHHHHHHHHHHHHHH---H-HHHHH
Confidence 111 1 2345556666555 333321 122333322211110 0 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHhhHHHHHHHHHhcCCcchhHHHHHHhhh
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (662)
.+++.|.+.|++.-|+.-++.+++.=. +....+...++.+|.+.|..++|......+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 477888889999889888888887422 22444555678889999999998777666643
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.3e-05 Score=44.42 Aligned_cols=30 Identities=37% Similarity=0.599 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006071 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNI 227 (662)
Q Consensus 198 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 227 (662)
+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444444333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0017 Score=52.97 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=86.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
...+...+...=|++....-.....+. .|+...-..+...+...|++.+|...|++...--+..|......+..+..
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 344444444444555444444333332 35555555666677777777777777776655334446666666666666
Q ss_pred hcCChhHHHHHHHHHHHcCC-CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGV-ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAI 181 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 181 (662)
..+++..|...++.+-+... ..++.+...+.+.+...|++..|...|+..... -|+...-......+.+.|+.+++.
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 67777777777776655320 012334445556666677777777777776654 233333333333455566555544
Q ss_pred HH
Q 006071 182 RF 183 (662)
Q Consensus 182 ~~ 183 (662)
.-
T Consensus 214 aq 215 (251)
T COG4700 214 AQ 215 (251)
T ss_pred HH
Confidence 33
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.2e-05 Score=44.04 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00054 Score=65.88 Aligned_cols=112 Identities=11% Similarity=0.052 Sum_probs=53.4
Q ss_pred cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 124 RSVKSYDALFKLILRRGRYMMAKRYFNKMLSE--GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
.+......+++.+....+.+.+..++-++... ....-..|..++++.|.+.|..+.+..++..=...|+.||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444444444444455555555444332 1111222334555555555555555555555555555555555555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (662)
||+.+.+.|++..|.++...|...+...+..++.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 5555555555555555555554443333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0005 Score=66.21 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=69.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
...+...|+++.|++.|+.+++.+ |.+...|..+..+|...|++++|...+++++...+. +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 345567788888888888888776 677778888888888888888888888887776543 56677777777778888
Q ss_pred hhHHHHHHHHHHHcC
Q 006071 107 VQESVKIFDIMKQLG 121 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g 121 (662)
+++|+..|+...+.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888777653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.041 Score=52.12 Aligned_cols=445 Identities=13% Similarity=0.145 Sum_probs=200.1
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHH------HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH--H
Q 006071 66 LGRVGKLNHARCILLDMPKKGVQWDEDMF------EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI--L 137 (662)
Q Consensus 66 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~--~ 137 (662)
+.+.+++.++..+|.++.+..- .++..+ +.++.+|.. ++.+.....+....+.. | ...|-.+..++ -
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 4577888888888888776422 232222 244555543 45555555555554431 2 22333343332 3
Q ss_pred HcCChhHHHHHHHHHHhC--CCCc------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHH
Q 006071 138 RRGRYMMAKRYFNKMLSE--GIEP------------TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI----SLDVVTY 199 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 199 (662)
+.+.+.+|++.+....+. +..+ |-..=+..+.++...|++.+++.+++++..+=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567777877777665443 2111 111113344555666777777776666654322 2456666
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006071 200 NTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV-ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (662)
Q Consensus 200 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (662)
+.++-.+++ ..|-++.+.. .-+. .-|.-++-.|.+.=. .++.-.-..+.|.......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 665544433 2222222110 0010 112223333322110 01100001123443444444433322
Q ss_pred C--CCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHcCCc
Q 006071 279 A--GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI----PTEAGHYGILIENFCKAEM 352 (662)
Q Consensus 279 ~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~ 352 (662)
. ....--+++++.-....+.|+..-+...+.....+ +.+++..+.+.+....+ ..-..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11222333344334445566444455555555444 44444444444433211 1123456667777777777
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCcccc-------HHHHHHHHH-hc---CChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASS-------YNPMIQHLC-HN---GQTGKAEIFFRQLMKKGVLDPVAFNNLI 421 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (662)
...|-+.+.-+.-- .|+... -..+.+..+ .. .+...=+.+|+.....+.........|+
T Consensus 314 T~~a~q~l~lL~~l----------dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~ 383 (549)
T PF07079_consen 314 TEEAKQYLALLKIL----------DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLV 383 (549)
T ss_pred HHHHHHHHHHHHhc----------CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 77777776655321 122211 111122222 11 1222223334443333333333333333
Q ss_pred H---HHHhcCC-hhHHHHHHHHHhhCCCCCCHHhHHHHHH----HHHhc---CChHHHHHHHHHHHHcCCCCcH----Hh
Q 006071 422 R---GHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICLIE----SYLRK---GEPADAKTALDSMIEDGHSPAS----SL 486 (662)
Q Consensus 422 ~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---~~~~~a~~~~~~~~~~~~~~~~----~~ 486 (662)
. -+.+.|. -++|+.+++.+.+.. +-|...-|.+.. +|.+. ..+..-..+-+-+.+.|++|-. ..
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 2 2344454 677778877777632 223333332221 22211 1222222333333344655432 22
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 487 FRSVMES--LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 487 ~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
-+.+.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|.+++..+
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 2333322 4456777776654444433 4556777777777777777777777776643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0015 Score=51.88 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILE 527 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 527 (662)
.++..+.+.|++++|...+..+.+.. |+ ......+...+...|+++.|...++.+....+.. ....+..+..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33344444444444444444444321 11 1223333444444444444444444444432211 1223333444
Q ss_pred HHHhCCCHHHHHHHHHHHHh
Q 006071 528 ALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~ 547 (662)
++...|++++|.+.++++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 44444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0029 Score=59.00 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC--C-Cc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006071 452 YICLIESYLRKGEPADAKTALDSMIEDGH--S-PA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (662)
Q Consensus 452 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (662)
|......|...|++++|...|.+..+... . +. ...|...... .+.+++++|+..++++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~--------------- 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKKGDPDEAIECYEKAI--------------- 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhCHHHHHHHHHHHH---------------
Confidence 33444556666777777766666542210 0 00 1112222222 22335555555555543
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhcc-CCHHHHHHHHHHHhcCCCCC-----ChhhHHHHHHHHHhcC
Q 006071 527 EALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEK-GKTIAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAG 600 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g 600 (662)
..|...|++..|-..+.++ +..|... |++++|+++++++++.--.. ....+..++..+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~l------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 3344555555555444332 3344444 56666666666655431111 1233445666666777
Q ss_pred CHHHHHHHHHHHHHcCCCC---c--Hhh-HHHHHHHHHhcCCcchhHHHHHHh
Q 006071 601 KTLNAYSILFKIMEKGGVT---D--WKS-SDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 601 ~~~~A~~~~~~~~~~~~~~---~--~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
++++|+++++++....... . ... +-..+-++...|+.-.|....+..
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777666543221 1 111 122344566666666664444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00029 Score=64.77 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=159.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHH--hh--CCCC-CCHHhHHHHHHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPV----AFNNLIRGHSKEGNPDSAFEIVKIM--GR--RGVP-RDADAYICLIESY 459 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~l~~~~ 459 (662)
-+++.|+......+|+.+++.|..|.. +|..|..+|...+++++|+++...= .. .|-. -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467899999999999999999965554 5777888899999999999875421 11 1100 0223334455555
Q ss_pred HhcCChHHHHHHHHHHH----HcCCC-CcHHhHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHc-
Q 006071 460 LRKGEPADAKTALDSMI----EDGHS-PASSLFRSVMESLFEDG--------------------RVQTASRVMKSMVEK- 513 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g--------------------~~~~a~~~~~~~~~~- 513 (662)
--.|.+++|+.+..+-+ +.|-+ .....+..+...|...| .++.|.++|.+-++.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777765544332 21211 11233444555554332 234455555543332
Q ss_pred ---CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC-
Q 006071 514 ---GVK-ENLDLVAKILEALLMRGHVEEALGRIDLMM----QSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR- 580 (662)
Q Consensus 514 ---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~- 580 (662)
|-. .--..|..+...|.-.|+++.|+..-+.-+ +.|.... ...+..++.-.|+++.|.+.+++.+..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 100 011234555666667788999987644222 2333322 334667777789999999998865543
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCcHhhHHHHHHHHHhcCCcchhHHHHHHhh
Q 006071 581 ---DC-IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG----G-VTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (662)
Q Consensus 581 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (662)
+. .......++++.+|.-...++.|+.+..+-+... + +-...++-.|..+|-..|..++|..+++.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 1235566789999999999999999988844321 1 1144455568889999999999976665443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0032 Score=53.75 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...++++++..+. +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3445555555566666666666666554322221 234555555666666666666666666655433 3444555555
Q ss_pred HHHhCCCHHHHH
Q 006071 528 ALLMRGHVEEAL 539 (662)
Q Consensus 528 ~~~~~g~~~~A~ 539 (662)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 666655544444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00032 Score=62.13 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (662)
+-+.+.+++++|+..|.+.++. .| |.+.|..=..+|.+.|.++.|++-.+..+..++. -...|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 4567888999999999999864 34 4555666677899999999999999888887555 466788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH
Q 006071 536 EEALGRIDLMMQSGSVPNFDSL 557 (662)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~~~~~ 557 (662)
++|++.|++.++ +.|++.++
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHH
Confidence 999999998887 88886643
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=55.82 Aligned_cols=92 Identities=9% Similarity=0.018 Sum_probs=62.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD--EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDA 131 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 131 (662)
.....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3445677777778888888888888888776443322 3567777788888888888888888877753 234556666
Q ss_pred HHHHHHHcCChhHHH
Q 006071 132 LFKLILRRGRYMMAK 146 (662)
Q Consensus 132 l~~~~~~~g~~~~A~ 146 (662)
+..++...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666776666644433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00068 Score=51.24 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHH
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKM 152 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (662)
+..+...+...|+++.|.+.|+...... +.+...+..+...+...|+++.|...+...
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333344444444444333322 112223333333344444444444444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00088 Score=49.78 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhh
Q 006071 168 LWGFFLSLKLETAIRFFEDMKSRGI-SLDVVTYNTMINGYNR 208 (662)
Q Consensus 168 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~ 208 (662)
|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3334444555555555555555555 5555555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00089 Score=50.58 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=43.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCh
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP 465 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 465 (662)
+...+...|++++|...++.+.+..+.+...+..+..++...+++++|.+.++...... +.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555555555444444444555555555555555555555544432 11233444444445555555
Q ss_pred HHHHHHHHHHH
Q 006071 466 ADAKTALDSMI 476 (662)
Q Consensus 466 ~~a~~~~~~~~ 476 (662)
+.|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=61.09 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCChHHHHHHHH
Q 006071 144 MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV---VTYNTMINGYNRFKKMDEAEKLFA 220 (662)
Q Consensus 144 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~ 220 (662)
.|..+|+...+. ...+...|...+..+.+.++.+.|+.+|++.... +.++. ..|...+..-.+.|+++.+.++.+
T Consensus 54 ~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 54 RARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444333 2223333444444444444444444444444433 11111 244444444444444444444444
Q ss_pred HHH
Q 006071 221 EMK 223 (662)
Q Consensus 221 ~~~ 223 (662)
++.
T Consensus 132 R~~ 134 (280)
T PF05843_consen 132 RAE 134 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.002 Score=57.62 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhc---cCCHHHHHHHHH
Q 006071 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSE---KGKTIAAVKLLD 575 (662)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~---~g~~~~A~~~~~ 575 (662)
+....-++.-+..++. |...|..|...|...|+++.|+..|.+..+ .|.+|+. ..+..++.. .....++..+++
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3334444555566666 888899999999999999999999998887 3444442 223444332 336678999999
Q ss_pred HHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
+++..++. +......++..++..|++.+|...|+.|++.....
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99998744 34444468999999999999999999999886543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=62.73 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=88.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (662)
...+...|+++.|+..|++++...+.+...+..+..+|...|++++|+..++.+..... .+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 34556789999999999999999999999999999999999999999999999998753 36788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMES 493 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (662)
+|...|++.++. .|+...+...+..
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999999999964 4655554444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=63.83 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=79.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR--GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (662)
+.+......++..+....+++.+..++-..... ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555666666666666667777766666544 111122334577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 006071 236 TMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDA 279 (662)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 279 (662)
.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776655556666666555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0029 Score=56.64 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC---ChhHHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG---IVQESVK 112 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 112 (662)
.+....-.+.-++.+ |.|...|..+..+|...|+++.|...|.+..+...+ ++..+..+..++..+. ...++..
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 334444444444444 555556666666666666666666665555554332 4555555554443331 2334555
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
+|+++.... +.|+.+...|...+...|++.+|...|+.|...
T Consensus 215 ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 215 LLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555543 234445555555555556666666655555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00025 Score=49.45 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=47.8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 006071 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG 86 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 86 (662)
+...|++++|+++|+.+.... |.+..++..++.+|.+.|++++|..+++.+....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 346789999999999999887 7899999999999999999999999999998864
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.09 Score=52.59 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=123.0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHHcCC
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI----------ESYGKKGIVQESVKIFDIMKQLGV 122 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~g~ 122 (662)
.|.+..|..+.+.....-.++-|...|-+.... +.......+- ..-+--|.+++|.++|-.+.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 588999999998887777888888888766542 1221111111 11122378888888888776533
Q ss_pred CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
..+..+.+.|+|-...++++.--.. +...-...|+.+...++....+++|.+.|...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3456666777777766665442110 00111345677777777777777777777654321 23
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 281 (662)
.+.++.+..++++-+.+.+.+ +.+....-.+..++.+.|--++|.+.|-+.. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 455666666666555554444 3355666677788888888777777664332 22 133455666677
Q ss_pred HHHHHHHHHH
Q 006071 282 MVEVQKVLRE 291 (662)
Q Consensus 282 ~~~a~~~~~~ 291 (662)
+.+|.++-++
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777776554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.093 Score=52.49 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 193 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
.|....|..+.......-.++.|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4566777777766666666666666655443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=48.74 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=36.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGI-EPTRHTYNVMLWGFFLSL--------KLETAIRFFEDMKSRGISLDVVTYNTMI 203 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (662)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544321 1223344445555555555555555554
Q ss_pred HHH
Q 006071 204 NGY 206 (662)
Q Consensus 204 ~~~ 206 (662)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.072 Score=50.40 Aligned_cols=427 Identities=12% Similarity=0.107 Sum_probs=215.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
+.|..+|-.++..+...+..++..+.++++..- ++--...|...+++-...+++...+.+|.+.....+ +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 346777888888888888888888888888754 333456777777777777888888888888776533 45556555
Q ss_pred HHHHHhcCCH------HHHHHHHHHHh-hCCCCCCH-HHHHHHHH---HHHhCCC------HHHHHHHHHHHHHcCCCCC
Q 006071 238 IKGYVAVERA------DDALRIFDEMK-SFDVKPNA-VTYTALLP---GLCDAGK------MVEVQKVLREMVERYIPPK 300 (662)
Q Consensus 238 ~~~~~~~~~~------~~a~~~~~~~~-~~~~~~~~-~~~~~ll~---~~~~~g~------~~~a~~~~~~~~~~~~~~~ 300 (662)
+.--.+.+.. ....+.|+-.. -.++.|-. ..|+..+. ..-..|. ++.....+.+++.. |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t---P- 191 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT---P- 191 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC---c-
Confidence 5543333211 11122232222 23333322 22333332 2222232 33344444444442 2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCC------
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQS------ 374 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 374 (662)
.|.+++.+.-|+..... .+..|-..++. -..--+-.|...++++.......+...
T Consensus 192 --------------~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt 252 (660)
T COG5107 192 --------------MGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRT 252 (660)
T ss_pred --------------cccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhh
Confidence 12222222222221110 00001000000 001112333333333322110000000
Q ss_pred ---CCCCccccHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 375 ---TLDMEASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 375 ---~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
.......-|...|.--...+ ......-++++.+..-+..+..|--....+...++-+.|+.........
T Consensus 253 ~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~- 331 (660)
T COG5107 253 ANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM- 331 (660)
T ss_pred hccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-
Confidence 00001111333333221111 1123334455555554556666666666667777888887776554432
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--------------CC---------------CCcHHhHHHHHHHHH
Q 006071 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIED--------------GH---------------SPASSLFRSVMESLF 495 (662)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~---------------~~~~~~~~~l~~~~~ 495 (662)
.|+. -..+...|.-.++-++....|+..... +. ..=..+|...+.+..
T Consensus 332 -spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~ 408 (660)
T COG5107 332 -SPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVL 408 (660)
T ss_pred -CCch--heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2331 111222222223333333323222110 00 001223555666666
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhccCCHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVK 572 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~ 572 (662)
+..-.+.|..+|-++.+.+ ..++...+++++..+ ..|++.-|..+|+--+. .+..|-+ ...+..+..-++-+.|..
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 6777888999999988887 556666777777744 45677788888875443 4444442 346666677888899999
Q ss_pred HHHHHhcCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 573 LLDFCLGRDCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 573 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+|++++..--.. -...|..+++--..-|+...|..+=+++.+.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 999777652111 2566777777777888888888776666654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0013 Score=60.95 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=66.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
+|..++....+.+..+.|..+|.++.+....+..+|......-.. .++.+.|..+|+...+. ++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 345555555555556666666666654444444444444444222 34455566666665553 3345555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 461 RKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
..|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666665542 22222 24555555555556666666555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.02 Score=51.68 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 237 MIKGYVAVERADDALRIFDEMKSF--DVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 292 (662)
+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555432 11222334444555555555555555554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=55.63 Aligned_cols=81 Identities=5% Similarity=-0.121 Sum_probs=41.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQW--DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 133 (662)
...|..++..+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555555556666666666666654432221 12355555556666666666666666655432 22233344444
Q ss_pred HHHH
Q 006071 134 KLIL 137 (662)
Q Consensus 134 ~~~~ 137 (662)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.028 Score=55.43 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH------------
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF------------ 554 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------ 554 (662)
...+...+.+...+.-|.++|+.|-+. ..+++.....++|++|..+.++.-+ +.|+.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhh
Confidence 333333344444555555555555321 2344555556666666665554433 33331
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHHhc
Q 006071 555 --DSLLSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 555 --~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
...-.++.++|+..||.+++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 0111234566777777777775543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0048 Score=48.03 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC--CCHHHHHHHHHHH
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHD--RETHLKMIEILGRVGKLNHARCILLDMPKKGVQ--WDEDMFEVLIESY 101 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 101 (662)
...++...|+.++|+.+|+.++..+ .... ..++..+...+...|++++|..+|+......+. .+......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3446667788888888888887765 2222 346667777778888888888888777654221 1223333344456
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
...|+.++|.+++-.... ++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 677777777777766553 34445555555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=57.78 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=71.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
..+.+++.+|+..|..++...|.|+..|..-..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 456677888888888888887778888888888888888888887777777764311 3467777777888888888888
Q ss_pred HHHHHHHHcCCCCcHHhHHHHH
Q 006071 470 TALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
+.|++.++ +.|+..+|-.-+
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHH
Confidence 88777774 557666554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0062 Score=51.81 Aligned_cols=80 Identities=14% Similarity=-0.015 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
..|..++..+...|++++|...+++.......+ ...++..+...+...|++++|+..++++....+. ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 344455555555566666666665555332111 1124455555555566666666666665554322 2333444444
Q ss_pred HHH
Q 006071 528 ALL 530 (662)
Q Consensus 528 ~~~ 530 (662)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0019 Score=58.69 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh-CCCC---CCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHH
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMMQ-SGSV---PNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLD 594 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 594 (662)
|...+..+...|++++|+..|+.+++ .+-. |+. .-++.++...|++++|...|+++++..+... +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44333333556777777777777765 2211 121 1244555666777777777777666543322 344445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 006071 595 ALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
++...|++++|.+.++++++.-
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6667777777777777666553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.023 Score=57.53 Aligned_cols=135 Identities=9% Similarity=0.032 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 006071 410 GVLDPVAFNNLIRGHSKEG-----NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG--------EPADAKTALDSMI 476 (662)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 476 (662)
.+.+..+|..++++..... +...|..+|+++.+..+. ....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3667777777777654322 255777777777775322 3344444433332211 1223333333333
Q ss_pred HcC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 477 EDG-HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 477 ~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
... ...+...+..+.......|++++|...++++++.+ |+...|..++.++...|++++|.+.+++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 211 12233445555445555678888888888877765 3566777777778888888888888777766
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00029 Score=48.54 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (662)
...+...|++++|++.|+.+++.. |.++.++..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666777777777777777665 566777777777777777777777777766654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=56.96 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=51.8
Q ss_pred hccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHhhHHHHHHHHHhcCCc
Q 006071 562 SEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 637 (662)
...|++.+|...|..-++..|... +..++.|+..++..|++++|..+|..+...-+ +.....+..|..+....|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 345556666666665555543332 33344566666666666666666666554322 12334455566666666666
Q ss_pred chh-HHHHHHhhhhccccchhh
Q 006071 638 KQA-DILSRMIRGEMSRGSQKE 658 (662)
Q Consensus 638 ~~a-~~~~~~~~~~~~~~~~~~ 658 (662)
++| ..+.+.+++.|..+...-
T Consensus 232 d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHHHH
Confidence 666 455555555555554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0006 Score=46.90 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..+...|++++|...|+.+++..+. +...+..+..++...|++++|+.+++++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666666555433 455555555556666666666666555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00066 Score=47.25 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|+++|+.+....+. +...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666677777766666555 555555666666666777776666666665
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.01 Score=60.05 Aligned_cols=140 Identities=12% Similarity=-0.012 Sum_probs=103.7
Q ss_pred CCccccHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHhhC
Q 006071 377 DMEASSYNPMIQHLCHN-----GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN--------PDSAFEIVKIMGRR 443 (662)
Q Consensus 377 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~ 443 (662)
+.+...|...+.+.... +....|..+|+++.+..|.....+..+..++..... ...+.+........
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 34566777777765432 347789999999999999888888877665543221 23334444443332
Q ss_pred -CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006071 444 -GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN 518 (662)
Q Consensus 444 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 518 (662)
..+.++..|..+.-.+...|++++|...++++...+ |+...|..+...+...|+.++|.+.++++...++..+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 233456788888777778899999999999999765 7888899999999999999999999999998866543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.007 Score=49.19 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=67.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCC
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGK 601 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 601 (662)
....-+...|++++|..+|+-+.. .+..|++ ..++..+...+++++|+..+..+...+. .++..+...+.++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 355567788999999998887765 2334443 2345555567899999999987777653 445555568999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 006071 602 TLNAYSILFKIMEKG 616 (662)
Q Consensus 602 ~~~A~~~~~~~~~~~ 616 (662)
.+.|..-|......+
T Consensus 121 ~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 121 AAKARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998887753
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00081 Score=46.96 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQ 547 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 547 (662)
.|..+...+...|++++|+..|++.++.++. +...|..+..++...| ++++|++.+++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444444445555555555555555554433 3444444555555555 45555555544443
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00026 Score=39.92 Aligned_cols=26 Identities=42% Similarity=0.891 Sum_probs=10.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 199 YNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 199 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00024 Score=40.08 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0056 Score=51.99 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=63.6
Q ss_pred CcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHh
Q 006071 158 EPTRHTYNVMLWGFFLS-----LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 232 (662)
..+..+|..++..+.+. |..+-....+..|.+-|+..|..+|+.|++++=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 34666666666666532 5566666666666666666667777766666544 2221 111111111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAG 280 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 280 (662)
.-| -.+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 1234667889999999999999999999988886544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.099 Score=45.95 Aligned_cols=171 Identities=14% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHH
Q 006071 455 LIESYLRKGEPADAKTALDSMIEDGHS--PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA--KILEALL 530 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 530 (662)
....+...|++++|...|+.+...... --......++.++.+.|+++.|...++.+++..+.-...-+. .++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455667777777777776653211 112334455566667777777777777766653322111111 1111111
Q ss_pred -----------hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhc
Q 006071 531 -----------MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (662)
Q Consensus 531 -----------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (662)
..+...+|+..|+.+++ .-|+ ..-..+|...+..+-+. . ...-..+++.|.+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~--~yP~----------S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK--RYPN----------SEYAEEAKKRLAELRNR---L-AEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH--H-TT----------STTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCT
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH--HCcC----------chHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHc
Confidence 11223455556655554 1222 22233333333211111 0 01112478889999
Q ss_pred CCHHHHHHHHHHHHHcCCCC--cHhhHHHHHHHHHhcCCcchhH
Q 006071 600 GKTLNAYSILFKIMEKGGVT--DWKSSDKLIAGLNQEGNTKQAD 641 (662)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 641 (662)
|++..|+.-++.+++.=..+ ...+...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999988863322 2234556888899999888553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.11 Score=45.89 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=103.3
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh----
Q 006071 459 YLRKGEPADAKTALDSMIEDG-HSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV-KENLDLVAKILEALLM---- 531 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---- 531 (662)
-.+.|++++|.+.|+.+.... ..| ...+...++-++.+.++++.|+..+++.+...+ .||.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 346688888888888777542 111 244555666677788888888888888877733 33333 3333333331
Q ss_pred ---CCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006071 532 ---RGHV---EEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (662)
Q Consensus 532 ---~g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 605 (662)
..+. .+|..-+++++. --|+.....++-. =+..++..+. ..=..+++-|.+.|.+.-|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~--ryPnS~Ya~dA~~-------~i~~~~d~LA-------~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQ--RYPNSRYAPDAKA-------RIVKLNDALA-------GHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHH--HCCCCcchhhHHH-------HHHHHHHHHH-------HHHHHHHHHHHHhcChHHH
Confidence 1122 233334444443 2233211111111 1111111111 1112577888899999999
Q ss_pred HHHHHHHHHcCCC--CcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhcccc
Q 006071 606 YSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (662)
Q Consensus 606 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (662)
..-++.+++.-.. -...++..+..+|.+-|-.++|......|..+...+
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999998886332 234455668888999999999988888888776655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.06 Score=47.33 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=25.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC--CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 99 ESYGKKGIVQESVKIFDIMKQLGV--ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
..+...|++.+|...|+.+...-. +.-..+.-.++.++.+.|+++.|...++.+++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445555555555555544310 111223344445555555555555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0071 Score=54.98 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=43.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH----HHHHHHHhccCCH
Q 006071 495 FEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF----DSLLSVLSEKGKT 567 (662)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~----~~~~~~~~~~g~~ 567 (662)
.+.|++++|+..|+.+++..+... ...+..++.+|...|++++|+..|+.+.+ .+..|.. ..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555555433321 23334455555566666666666655554 2222221 1233344455666
Q ss_pred HHHHHHHHHHhcCC
Q 006071 568 IAAVKLLDFCLGRD 581 (662)
Q Consensus 568 ~~A~~~~~~~~~~~ 581 (662)
++|..+++++++..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.021 Score=53.14 Aligned_cols=132 Identities=18% Similarity=0.094 Sum_probs=83.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh----hCCC-CCCHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKK----G--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG----RRGV-PRDAD 450 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~ 450 (662)
.|..+...|.-.|+++.|+...+.-... | .....++..+..++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444555555667888888776654332 2 2334567778888888888888888887643 2221 12334
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIED-----GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+.-+|.+.|.-..+++.|+.++.+-+.- ...-....+.+|..++...|..+.|+.+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5556777777777788888777664321 11123345667777788888888888777766543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0087 Score=48.63 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=73.0
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCc
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (662)
+.-+...|++++|..+|......++. ++..+..|+.++-..|++++|+..+.....-. ..++..+.+...||...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34445799999999999977776544 45566789999999999999999999877653 35666778899999999999
Q ss_pred chhHHHHHHhhhhcc
Q 006071 638 KQADILSRMIRGEMS 652 (662)
Q Consensus 638 ~~a~~~~~~~~~~~~ 652 (662)
+.|+.-.+.....+.
T Consensus 122 ~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 122 AKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999766555555433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0079 Score=51.11 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 111 VKIFDIMKQLGVERSVKSYDALFKLILRR-----GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
...|+.... -..+-.+|..++..|.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 345555532 257889999999999864 6677777888999999999999999999998754 3322 111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (662)
.+-. -.-.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 110 ~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 1123446678899999999999999999999998866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0018 Score=45.24 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMI 476 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 476 (662)
.+|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|+..+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444555555555555555444432 113444444444555554 3555555554444
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.19 Score=47.75 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 006071 589 YEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWK 622 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 622 (662)
+..++.+..-.|++++|.+..+++.... ++.|.
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 4456666666777777777777777553 44553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.34 Score=46.08 Aligned_cols=457 Identities=10% Similarity=0.077 Sum_probs=244.6
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006071 41 QFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120 (662)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 120 (662)
++=+.+.+ + |.+...|..+++-+...|.+++.+++++++... .+.-+.+|...+.+-....++.....+|.+....
T Consensus 30 rLRerIkd-N--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKD-N--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhc-C--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 44444433 3 788999999999999999999999999999864 3335667888888877888999999999998874
Q ss_pred CCCcCHHhHHHHHHHHHHcCCh------hHHHHHHHHHHh-CCCCcC-HHHHHHHHHHH---HhcC------CHHHHHHH
Q 006071 121 GVERSVKSYDALFKLILRRGRY------MMAKRYFNKMLS-EGIEPT-RHTYNVMLWGF---FLSL------KLETAIRF 183 (662)
Q Consensus 121 g~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~-~~~~~~-~~~~~~ll~~~---~~~~------~~~~a~~~ 183 (662)
. .+...|...+....+.... ....+.|+-.+. .++.|- ...|+..+..+ -..| +++.....
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3 5567777666655443311 111223333222 133332 22333333221 1223 34445555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--C
Q 006071 184 FEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYTTMIKGYVAVERADDALRIFDEMKS--F 260 (662)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 260 (662)
+.++....+..=...|+. ++.-+.-+..+..+.+. ..... +-.|...++++.. .
T Consensus 184 Y~ral~tP~~nleklW~d----------y~~fE~e~N~~TarKfvge~sp~-------------ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 184 YMRALQTPMGNLEKLWKD----------YENFELELNKITARKFVGETSPI-------------YMSARQRYQEIQNLTR 240 (660)
T ss_pred HHHHHcCccccHHHHHHH----------HHHHHHHHHHHHHHHHhcccCHH-------------HHHHHHHHHHHHHHhc
Confidence 655554422100111211 11111111111100000 00001 1122222222211 1
Q ss_pred CC----CCCHHH-----------HHHHHHHHHhC------CCH-HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 006071 261 DV----KPNAVT-----------YTALLPGLCDA------GKM-VEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 261 ~~----~~~~~~-----------~~~ll~~~~~~------g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (662)
|. +.+..+ |...+..-... +-. ....-+++..... .|-.+.+|......+...++-
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~isd~ 318 (660)
T COG5107 241 GLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGISDK 318 (660)
T ss_pred cccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhccHH
Confidence 10 011111 11222111110 111 1122223333332 122455555555556667777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHh---cCC
Q 006071 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH---NGQ 395 (662)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 395 (662)
+.|........ +..+...-.+...|.-.++-+.....|+.+.+.-.. -| ..+.+-+. .|+
T Consensus 319 q~al~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r------------~y-s~~~s~~~s~~D~N 381 (660)
T COG5107 319 QKALKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKR------------KY-SMGESESASKVDNN 381 (660)
T ss_pred HHHHHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHH------------HH-hhhhhhhhccccCC
Confidence 77776655433 333333333444555556666666666655321100 00 00111000 122
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
++...+++-+-. ..-..+|...+....+..-++.|..+|-++.+.+ +.+++..+++++..++. |++.-|..+|+-
T Consensus 382 ~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifel 457 (660)
T COG5107 382 FEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFEL 457 (660)
T ss_pred ccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHH
Confidence 322222211111 1234567777888888888999999999999887 66788889999987764 888999999988
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP 552 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 552 (662)
-... ++.+..-....+.-+...++-+.|..+|+..+.+ +.. -...|..++.--..-|+...+..+-+++.+ ..|
T Consensus 458 Gl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~p 533 (660)
T COG5107 458 GLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVP 533 (660)
T ss_pred HHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcC
Confidence 6653 3233334455666778889999999999977665 111 256788888888889999999888888877 444
Q ss_pred C
Q 006071 553 N 553 (662)
Q Consensus 553 ~ 553 (662)
.
T Consensus 534 Q 534 (660)
T COG5107 534 Q 534 (660)
T ss_pred c
Confidence 4
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.52 Score=46.87 Aligned_cols=311 Identities=12% Similarity=0.110 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH-hcCChhHHHH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG-KKGIVQESVK 112 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 112 (662)
.+.+.+...+..++..- |.-...|......-.+.|..+.+..+|++.+. +++.+...|...+..+. ..|+.+....
T Consensus 59 ~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 34567777777777653 77777888999888999999999999999887 56677888888776654 4478888888
Q ss_pred HHHHHHHc-CCC-cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH---hc------CCHHHHH
Q 006071 113 IFDIMKQL-GVE-RSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF---LS------LKLETAI 181 (662)
Q Consensus 113 ~~~~~~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~------~~~~~a~ 181 (662)
.|+.+... |.. .+...|...|..-..++++.....++++.++.. ...|+.....|. +. ...+.+.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~ 211 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELI 211 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHH
Confidence 99888764 311 245578888888888899999999999997641 222333322222 21 1223333
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHHHH-hhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 182 RFFEDMKSR----GISLDVVTYNTMINGY-NRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (662)
Q Consensus 182 ~~~~~~~~~----~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (662)
++-.....+ ...+....+..-+.-- ...+..+++..++.+... .--.++............|+.
T Consensus 212 ~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 212 QLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred HHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhh
Confidence 322222211 0000111111111100 011112222221111111 001112222223333333443
Q ss_pred HhhC---CCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 257 MKSF---DVK----PNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI 329 (662)
Q Consensus 257 ~~~~---~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 329 (662)
-... .+. ++..+|..-+.--...|+.+.+.-+++...-.- . .-...|...+......|+.+.|..++....
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-A-LYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-h-hhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 3321 122 244577777777788888888888888775531 1 134556666666666687777777776655
Q ss_pred hCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 006071 330 RLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (662)
Q Consensus 330 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (662)
+-.++..+.+--.-....-..|++..|..+++.+.
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 54333322222211222223467777777777764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.26 Score=43.25 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH
Q 006071 305 FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (662)
Q Consensus 305 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (662)
.+.++.++.-.|.+.-....++++++...+.++...+.+++.-.+.|+.+.|...|++..+.... -.+...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---L~~~q~~~~V~~ 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---LDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh---hhccchhHHHHh
Confidence 34444444445555555555555555444445555555555555555555555555544322110 011111111122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
.....+.-.+++..|...+.++...++.++...|.-.-+....|+..+|.+.++.|....
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 222334556777788888888888887788887777777777788999999998888753
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.22 Score=44.78 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=74.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
-+...|++.+|..+|..+.... +.+..+-..++++|...|+.+.|..++..++...-.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4456677778888887777766 56667777777777788888888888777765432222222223344555555555
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (662)
+...+-..+-.. +-|...-..+...+...|+.+.|.+.+-.+++
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555544444431 22555556666666677777777665555543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.21 Score=44.98 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=100.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHhccCCH
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS---LLSVLSEKGKT 567 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~~~~~~g~~ 567 (662)
.......|++.+|...|+.......+ +....-.+..+|...|+.++|..++..+-..--...... -+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33567789999999999999988666 455566799999999999999999886643211111111 23444455555
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcCCcchh
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 640 (662)
.+...+-.+ +..++ .+...-..++..+...|+.++|++.+-.++.+... .+...-..|+..+..-|..+.+
T Consensus 220 ~~~~~l~~~-~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRR-LAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHH-HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 544444443 33332 24444457999999999999999999998876432 3445556788888888877665
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.75 Score=47.61 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=113.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
.....-+..+.+...+.-|..+.+.-... ..--..++......+.+.|++++|...|-+.... .++ ..++.-|
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~---s~Vi~kf 407 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEP---SEVIKKF 407 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CCh---HHHHHHh
Confidence 45666777778888888888876644321 1111233444455566789999998888776532 111 2355566
Q ss_pred HHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHH
Q 006071 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 216 (662)
....+...-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+... .|.- ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6666677777788888888765 45555678889999999888776665544 2211 111334566666667777776
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
.+-..... +......+ +-..+++++|++.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 66544432 33333333 334688899998887763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0076 Score=42.56 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGV 87 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 87 (662)
.++.+.++++.|++.++.+...+ |.++..|.....++.+.|++.+|.+.|+...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45667777777777777777776 66777777777777777777777777777776543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=55.56 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
...++.+..+|...|++++|+..|++.++ +.|+ +..++.+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555566666666666666655555 3333 233444455555555555555555553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.01 Score=41.86 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|.+.+++++|.++++.++..++. +...+...+.++...|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555555555555555555444 444455555555555555555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.058 Score=44.53 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCcHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI-----EDGHSPASSL 486 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 486 (662)
...++..+...|++++|..+.+.+.... +.+...|..++.+|...|+..+|...|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444445555555555555555555542 2245555555555555555555555555543 1255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.53 Score=44.86 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=53.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSK---EGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (662)
+...++-+|....+++....+.+.+.... ...+.+-...+.++.+ .|+.++|+.++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34456667888888888888888887763 2233444455666666 7888888888887555555667777777
Q ss_pred HHHHHH
Q 006071 455 LIESYL 460 (662)
Q Consensus 455 l~~~~~ 460 (662)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 766653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.45 Score=42.11 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGV---LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
-.+.|++++|...|+.+....| ....+.-.++.++.+.++++.|+..+++.....+.....-|...+.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3466788888888888877663 3445556666777778888888888877776432222233444444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.65 Score=43.83 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (662)
+.+..+.-|...|....|.++.++. .+ |+...|...+.+|+..++|++-.++.+. ...+-.+..++..|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCC
Confidence 4555566677788887777765554 34 4777888888899999998887765432 122233667888888888
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
+..+|..++.++ .+...+..|.+.|.+.+|.+.-.+
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888998888851 124567788889999998877544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.21 Score=49.66 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA 380 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 380 (662)
+......+...+.+...+..|-++|..+-+ ...+++.....++|++|..+-+.. |+ ..|+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h--------Pe--~~~d- 805 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH--------PE--FKDD- 805 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC--------cc--cccc-
Confidence 333444444445555566666666666533 234566666777777777766655 22 1222
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
.|.....-++...++++|.+ +|.+.|+-.+|..+++++..
T Consensus 806 -Vy~pyaqwLAE~DrFeEAqk---------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 806 -VYMPYAQWLAENDRFEEAQK---------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -ccchHHHHhhhhhhHHHHHH---------------------HHHHhcchHHHHHHHHHhhh
Confidence 22233333344444444433 44456677777777776654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.31 Score=44.92 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCcHHh
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRD---ADAYICLIESYLRKGEPADAKTALDSMIEDGH-----SPASSL 486 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 486 (662)
+|..+.+++.+.-++.+++.+-+.-... |..|. -....++..++...+.++.+++.|+...+-.. ...-.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4455555555555555555554443331 21221 12333455666666667777777776653211 112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCC
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEK----GVKENL-----DLVAKILEALLMRGHVEEALGRIDLMMQ----SGSVPN 553 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 553 (662)
+..+...|....|+++|.-+..++.+. ++..-. .....+.-++...|+.-+|.+..++..+ .|..|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 556666667777777776666655443 222111 1122344456666666666666555443 444444
Q ss_pred H----HHHHHHHhccCCHHHHHHHHHHHhc
Q 006071 554 F----DSLLSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 554 ~----~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
. -.+.++|...|+.+.|..-++.+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 2366677777777777777776654
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.2 Score=45.60 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=64.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDA--DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRV 500 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (662)
++..-|+-++|..+.++|.... .|-. .-.-.+..+|+-.|+.....+++.-.... ...|..-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444566667777777776532 1111 11223455667777777766666665542 223333333333344556677
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 501 QTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 501 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+....+.+-+.+. ++......--++.-+|.-.|. .+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7777777665543 222222222334444544554 677777777764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.51 Score=41.53 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH-----HHHH
Q 006071 165 NVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT-----TMIK 239 (662)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~ 239 (662)
+.++..+.-.|.+.-....+.+..+...+.+......|.+.-.+.||.+.|...|++..+..-..|..+++ ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444555666666666666665545555566666666666666666666666554321112222222 2222
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 295 (662)
.|.-.+++.+|...+.++...+ +.|+...|.-.-+..-.|+...|++.++.++..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555554432 223333333333333445555555555555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.2 Score=45.64 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=63.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhcc
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEK 564 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 564 (662)
.+.+..+.-+...|...+|.++-++.. -|+...|-.-+.++...++|++-+++-+.... .-.+.-+..+|.++
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQ 757 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhc
Confidence 344444555666677777766655542 23555666566667777777666655443321 22245566677777
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
|+.+||.+++.+.-.. . ..+.+|.+.|++.+|.+.-
T Consensus 758 ~n~~EA~KYiprv~~l-------~--ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL-------Q--EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccHHHHhhhhhccCCh-------H--HHHHHHHHhccHHHHHHHH
Confidence 7777777777633221 1 3556667777777776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0043 Score=44.53 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
..+..++.++...|++++|++++++..+
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456677777778888888777777553
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.038 Score=42.37 Aligned_cols=92 Identities=21% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh---hHHHHHHHHHhcCC
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWK---SSDKLIAGLNQEGN 636 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 636 (662)
++.+.|+.+.|++.|.+++..-| ..+..|+.-+.++.-+|+.++|++-+++.++..+..... +|..-...|+..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34456666666666666665532 234445556666666666666666666666544433221 22223334566666
Q ss_pred cchhHHHHHHhhhhcc
Q 006071 637 TKQADILSRMIRGEMS 652 (662)
Q Consensus 637 ~~~a~~~~~~~~~~~~ 652 (662)
-+.|+.=.+....+++
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.063 Score=47.72 Aligned_cols=87 Identities=18% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHhCCCHHHHHHHHHHHHhC----CCCCCHHH-HHHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCC
Q 006071 529 LLMRGHVEEALGRIDLMMQS----GSVPNFDS-LLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGK 601 (662)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~----~~~p~~~~-~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 601 (662)
+...|++.+|.+.|...++. .+.|+-.. ++.++...|++++|..+|..+++..++.. +..+..++.++.+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 33444455555555555441 12222122 23344455555555555555554433322 4445556666666666
Q ss_pred HHHHHHHHHHHHHc
Q 006071 602 TLNAYSILFKIMEK 615 (662)
Q Consensus 602 ~~~A~~~~~~~~~~ 615 (662)
.++|...|++..++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.81 Score=42.60 Aligned_cols=91 Identities=19% Similarity=0.047 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCCcc-----ccHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006071 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEA-----SSYNPMIQHLCHNGQT---GKAEIFFRQLMKKGVLDPVAFNNLIRG 423 (662)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (662)
+++.|..++++..+.-..+.......++. .++..++.++...+.. ++|..+++.+....+..+.++..-+..
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~i 130 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEI 130 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777654311000111111221 2333444445444432 234444444443334444455444555
Q ss_pred HHhcCChhHHHHHHHHHhh
Q 006071 424 HSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 424 ~~~~~~~~~a~~~~~~~~~ 442 (662)
+.+.++.+.+.+.+..|..
T Consensus 131 l~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 131 LLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HhccCChhHHHHHHHHHHH
Confidence 5555555666666655555
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.5 Score=45.54 Aligned_cols=178 Identities=12% Similarity=0.112 Sum_probs=118.0
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHH----hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRE----THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL 97 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 97 (662)
+....+.++.+..-++-|+.+-+.- ..++. .....+.-+.+.|++++|.+.|-+.+.. +.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 4555666777788888888877643 23333 4445556667899999999888776642 222 234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006071 98 IESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKL 177 (662)
Q Consensus 98 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 177 (662)
+.-|....+..+....++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5556666677777788888888886 444555779999999999998877766653 2221 11234566677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
++|..+-..... +......++ -..+++++|.+.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 877776555443 333334443 34688999999888764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.39 Score=39.25 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=78.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH----H--HHHHHhccCCH
Q 006071 495 FEDGRVQTASRVMKSMVEKGVKENLD-LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----S--LLSVLSEKGKT 567 (662)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~--~~~~~~~~g~~ 567 (662)
...+..++|..-|..+.+.|...-+. ..-.......+.|+..+|+..|+++-.....|... . -..++..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566777777777777765442111 11234445667788888888888877655555422 1 23455678888
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
++.....+.....+.+..-..-..|+-+-++.|++.+|.+.|.++......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 8888777744333222222233467777788999999999998888765544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.74 Score=41.83 Aligned_cols=222 Identities=18% Similarity=0.101 Sum_probs=136.4
Q ss_pred CChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRKGEPADAKT 470 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 470 (662)
+....+...+......... ...........+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444445555555544432 3566667777777778888877777776542 223455666667777777777888888
Q ss_pred HHHHHHHcCCCCcHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 471 ALDSMIEDGHSPASSLFRSVME-SLFEDGRVQTASRVMKSMVEKGV--KENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+.........+ ......... .+...|+++.+...++....... ......+......+...++.++++..+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888777543222 122222222 57778888888888888755322 12233333344446677788888888887776
Q ss_pred CCCC--CC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 548 SGSV--PN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 548 ~~~~--p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.... +. ...+...+...++++.|...+..++...+. ....+..+...+...|..+++...+.+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 2222 11 334555666677888888888877776433 233344555666666778888888888776644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.2 Score=50.49 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHH----HHHHHhccCCHHHHHHHHHHHhcCCCC---CChhhHHHHHHHHHhcCCHHHHH
Q 006071 534 HVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLLDFCLGRDCI---IDLASYEKVLDALLAAGKTLNAY 606 (662)
Q Consensus 534 ~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 606 (662)
..+.|.++++.+.+ .-|+..- -+..+...|+.++|++.+++++..... ..-..+.-+++++.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45566666666655 3333211 122333456666666666655542111 11222335666666677777777
Q ss_pred HHHHHHHHcCCCCcHhhHHH-HHHHHHhcCCc
Q 006071 607 SILFKIMEKGGVTDWKSSDK-LIAGLNQEGNT 637 (662)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 637 (662)
+.+.++.+... ++-..|.. ...|+...|+.
T Consensus 326 ~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESK-WSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhccc
Confidence 77766666422 22222332 33335556666
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.19 Score=45.80 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=54.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC-CCCCCHHHHHH--HHHHHHhcC
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK-GVQWDEDMFEV--LIESYGKKG 105 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~--l~~~~~~~g 105 (662)
++...|+..+|-..++.+++.. |.+.-++...=.+|.-.|+...-...++++... .....-.+|.. +.-++..+|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 3444555555555555555543 555555555555555555555555555554432 11111111111 112223445
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK 151 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (662)
-+++|.+.-++..+.+ +.|..+..+...++--.|++.++.++..+
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555554433 23344444444444455555555554433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.03 Score=46.22 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=67.6
Q ss_pred HhcCCCHHHHHHHHHHHHHcC--CCCCCHHhHHHHHHHHHhcCChH-HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 30 LHGAKNSEHALQFFRWVERAG--LFNHDRETHLKMIEILGRVGKLN-HARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
....++.+.+.+.++.+.... ++-++... ..|- .....++.. -..+...++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-----------~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD-----------EEWVEPERERLREL-------YLDALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-----------STTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-----------cHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccC
Confidence 346778899999998887652 22222111 1111 111122221 12355566677778888
Q ss_pred hhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCcCHHHH
Q 006071 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS-----EGIEPTRHTY 164 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 164 (662)
++.|..+.+.+.... |.+...|..+|.++...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 78 ~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 78 YEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 888888888887765 45677888888888888888888888877643 3777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=41.97 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEK----GVK-EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
++.+...|...|++++|+..|++.++. |.. |. ..++..+..++...|++++|++++++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555554432 111 11 2334445555555555555555555443
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.17 Score=40.34 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh-CCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQ-SGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASY 589 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 589 (662)
-+....+.|++++|++.|+.+.. .+..|- .-.++.++.+.|++++|+..+++.++..|......|
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 33444555666666666666554 222221 112455555666666666666666665554443333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.084 Score=49.58 Aligned_cols=93 Identities=17% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcC
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (662)
.++-.+.+.+++.+|++..++++..++.+.-..| .-+.+|...|+++.|+..|+++++..+.+ -..-+.|+.+-.+..
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy-RrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALY-RRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIR 339 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Confidence 3445555667777777777777776543333333 56777777777777777777777654322 222234444444433
Q ss_pred Ccchh--HHHHHHhhhh
Q 006071 636 NTKQA--DILSRMIRGE 650 (662)
Q Consensus 636 ~~~~a--~~~~~~~~~~ 650 (662)
+..+. +....|+.+.
T Consensus 340 ~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33333 3334444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.5 Score=43.92 Aligned_cols=129 Identities=8% Similarity=0.079 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (662)
.++.++.---...+.+.+..+++.+... .|.. .-|......-.+.|..+.+.++|++-... ++.+...|......+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3444443333333445555555555543 2232 23444444445566666666666665542 444555555444433
Q ss_pred H-hcCCHHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 242 V-AVERADDALRIFDEMKSF-DVK-PNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 242 ~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
. ..|+.+...+.|+..... |.. -+...|...+..-...+++.....+++++++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 345555555555555432 211 1233455555555555666666666666655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.14 Score=46.58 Aligned_cols=153 Identities=14% Similarity=0.015 Sum_probs=110.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHhcCChHHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR---GVPRDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 468 (662)
..|...+|...++++.+..|.|..++...-++|...|+.+.-...++++... ++|.....-..+.-++..+|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4577888888899999988999999999999999999999988888888754 2222233334555667789999999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK---GVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
.+..++..+-+ +-|......+...+...|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|++-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99998887643 234555566677778889999999888765432 11111223445556677778999999988743
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.2 Score=42.13 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
+.+..+.-+...|+...|.++..+. . -|+..-|...+.+++..++|++-..+... ++ ++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHH
Confidence 4455566677788888887776665 2 37888888888899999998877765432 11 2344777888888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHH
Q 006071 531 MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLD 575 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~ 575 (662)
..|+..+|..++.++ |+ ..-+..|.+.|++.+|.+..-
T Consensus 249 ~~~~~~eA~~yI~k~------~~-~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PD-EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC------Ch-HHHHHHHHHCCCHHHHHHHHH
Confidence 889988888887762 23 566777788888888877643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.5 Score=38.60 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=26.2
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhc
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRV 69 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (662)
..+...+...+...+.+.....+++++...+ +.++..++.++..|++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 3344555555555556666666666655554 34555555555555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.32 Score=49.04 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHH------H----hcCChHHH
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESY------L----RKGEPADA 468 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~------~----~~~~~~~a 468 (662)
.-+|.-+...-| ..+..++....-.||-+.+++.+....+. ++. .+..--.|+..| + ...+.+.|
T Consensus 177 ~G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 344555555433 34556666667777888888777776553 222 222222222111 1 12334555
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 469 KTALDSMIEDGHSPASSLFRSVM-ESLFEDGRVQTASRVMKSMVEKG---VKENLDLVAKILEALLMRGHVEEALGRIDL 544 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (662)
.++++.+.+. -|+...|...- ..+...|+.++|++.|+...... .+.....+--++.++.-.++|++|.+.+..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 5666655542 24443332222 23444566666666666544210 011112223344445555555555555555
Q ss_pred HHh
Q 006071 545 MMQ 547 (662)
Q Consensus 545 ~~~ 547 (662)
+.+
T Consensus 331 L~~ 333 (468)
T PF10300_consen 331 LLK 333 (468)
T ss_pred HHh
Confidence 544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.43 Score=46.25 Aligned_cols=111 Identities=13% Similarity=0.010 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHhccCCHHHHHHHH
Q 006071 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLL 574 (662)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~ 574 (662)
+..+|.+..++.++.+.. |......+..++...|+++.|...|++... +.|+... .+..+.-+|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566666666666555 555555666666666777777777777765 5666432 223334567777777777
Q ss_pred HHHhcCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 006071 575 DFCLGRDCIIDLASYE-KVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 575 ~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
+++++.+|---..... ..++.|+. ...++|+.++-+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 7777765433222222 22223333 34566666665533
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.79 Score=42.44 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC-----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcHH--
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRR-----GVPRDADAYICLIESYLRKGEPADAKTALDSMIED----GHSPASS-- 485 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-- 485 (662)
..++..++...+.++++++.|+...+. +.......+..|...|.+..++++|..+..+..+. ++..-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344556666666777777777665541 11112345667777777777777776665554421 2111111
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 ---LFRSVMESLFEDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
....+.-++...|...+|.+..++..+. |-.+ -......+...|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1222333556667777777766666543 2221 12233456667777777777776665443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.098 Score=41.66 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=68.8
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH--hcC
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN--QEG 635 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g 635 (662)
...+.|++++|++.|+.....-|... ......++.+|++.|++++|+..+++.++..+...-..|.....++. ...
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 34578999999999997776643332 44555799999999999999999999998655433333333333322 221
Q ss_pred C---------------cchh-HHHHHHhhhhccccchhhhhcC
Q 006071 636 N---------------TKQA-DILSRMIRGEMSRGSQKEKKQK 662 (662)
Q Consensus 636 ~---------------~~~a-~~~~~~~~~~~~~~~~~~~~~~ 662 (662)
. ..+| ..+.+.+..-|++.-..+.++|
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 1 4455 5667777777777666555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.67 Score=38.99 Aligned_cols=91 Identities=22% Similarity=0.177 Sum_probs=53.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhc
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNFD-----SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (662)
+...+...|++++|+.-++..+..+.+.+.. .+...+...|.+++|+..++...+.+. .+......+++|...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455666777777777666665433333322 234455567777777777763333221 223344567777777
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 006071 600 GKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 600 g~~~~A~~~~~~~~~~~~ 617 (662)
|+.++|..-|++.+....
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 777777777777777653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.13 Score=40.56 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhh-------ccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEII-------LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (662)
..++..++.++++.|+.+....+++..-..+.. ..+.....|+..+..+++.+|+..+++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345556666666666666666666544221110 0133444455555555555555555555555555555444
Q ss_pred C--CCCHHHHHHHHHH
Q 006071 410 G--VLDPVAFNNLIRG 423 (662)
Q Consensus 410 ~--~~~~~~~~~l~~~ 423 (662)
- +.+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3 3334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.4 Score=40.24 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF--RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDL--VAKI 525 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l 525 (662)
..|..++.... .+.+ +.....+.+...+-......+ ..+...+...|++++|...++..+....+.+... --.|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 44555555443 3334 455555566543212222222 2334467889999999999998875522222222 2357
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 526 LEALLMRGHVEEALGRIDLMMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.+.....|.+|+|+.+++...+.+..+-.. .-++++...|+.++|+.-|++++..+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 788899999999999998886655444432 35678889999999999999999986
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.58 Score=38.32 Aligned_cols=137 Identities=13% Similarity=0.143 Sum_probs=78.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH-hHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDED-MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-SYD 130 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~ 130 (662)
..+...|...++. .+.+..++|..-|..+.+.|...-+. ............|+...|...|+++-.....|... ...
T Consensus 56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3455566555553 45666777777777777766542222 22233344566777777777777776543333322 111
Q ss_pred HH--HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 131 AL--FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 131 ~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.| .-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11 2234567777777777766654443333334455555556778888888888777654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.77 E-value=3.1 Score=45.31 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=88.3
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 006071 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTAS 504 (662)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 504 (662)
..+.|+.+-+-+++++.+. +++..-| .|+.| .++++.|+.-+.++- ...|...++.-.++|.+.+|.
T Consensus 862 ~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhh
Confidence 3455666666666665531 1221111 12222 245666666555542 112333344445556666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCC
Q 006071 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCII 584 (662)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (662)
.++..-.+. -...|.+.+.-+.+.+.+++|.-+|+..-+ ....+.++..+|++.+|..+..+..... .-
T Consensus 929 ~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de 997 (1265)
T KOG1920|consen 929 ALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSEGK-DE 997 (1265)
T ss_pred heeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HH
Confidence 554432222 223344444555555566665555543321 2334445555666666666655332210 00
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHH
Q 006071 585 DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSR 645 (662)
Q Consensus 585 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (662)
-...-..|+.-+...|++-+|.+++....... ..-+..|++.-.|++|.++..
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~--------~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLSDP--------EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhcCH--------HHHHHHHhhHhHHHHHHHHHH
Confidence 01111345556666667777666665544321 124445555555666644433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.78 Score=44.70 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
..++.---+.++++.-++.-+++++.+ |..+.+|..+.+- ......++.+++++..+.|- ..+. +
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE----~~lg-------~ 236 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE----ASLG-------K 236 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH----Hhhc-------h
Confidence 334444445667777777777777665 4555666555532 23346777777777665321 1110 0
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE-PTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
....+..-..++....+...+-..+-..+..++-+.|+.++|++.|.+|.+.... .+......++.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0000111111222222222222333344555666778888888888887664322 133455667777777888888887
Q ss_pred HHHHHHhCCCCCC-HHHHHHHH
Q 006071 183 FFEDMKSRGISLD-VVTYNTMI 203 (662)
Q Consensus 183 ~~~~~~~~~~~~~-~~~~~~ll 203 (662)
++.+.-+...+.+ ..+|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 7777654332222 33455443
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.1 Score=43.58 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 395 QTGKAEIFFRQLM---KKGVLDPVAFNNLIRGHSKE---------GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 395 ~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
..+.|..+|.+.. ...|.....|..+..++... .+..+|.++.+...+.+. .|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 4556777888888 43344455555554443321 122233344444444332 2444444444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 463 GEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
++++.|...|++.... .|| ..+|......+...|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 4444455555444432 233 222333333333444444554444444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.18 Score=39.85 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 006071 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (662)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (662)
..++..++.++++.|+++....+++..-. +.++... ..+. --......|+..++.+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566666667777776666666654432 2211100 0000 01122456777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 006071 494 LFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEA 528 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 528 (662)
|+..|++..|+++++...+. +++.+...|..|+.-
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777777777777777665 666566666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.32 Score=45.86 Aligned_cols=61 Identities=8% Similarity=-0.141 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
+..+..++.+.+++..|+......+...++|....-.-..++...|+++.|+..|+.+.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3445555556666666666666666666666666655666666666666666666666554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.82 Score=35.56 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=29.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 445 (662)
..+......|..+.-.+++..+.+.+.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344445555555555555555554455555555666666666666666666655555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.35 Score=37.35 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=58.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHhcCChH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA---DAYICLIESYLRKGEPA 466 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 466 (662)
.+..|+.+.|++.|.+.+...|..+.+||.-.+++.-.|+.++|++-+++..+..-+.+. ..|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 456677788888888777777777777887777777778888877777777663211122 23333444555666666
Q ss_pred HHHHHHHHHHHcC
Q 006071 467 DAKTALDSMIEDG 479 (662)
Q Consensus 467 ~a~~~~~~~~~~~ 479 (662)
.|..-|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6666666665544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.2 Score=38.92 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=10.7
Q ss_pred HHHHHhcCChhHHHHHHHHHh
Q 006071 421 IRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~ 441 (662)
..+|....++++|...+.+..
T Consensus 38 AvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHH
Confidence 344455555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.2 Score=48.33 Aligned_cols=66 Identities=6% Similarity=-0.047 Sum_probs=42.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDE---DMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
|.++..|..+..+|...|++++|...|++.+...+. +. .+|..+..+|...|+.++|+..++++.+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666777777777777777777766655433 22 2466666677777777777777776665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.36 E-value=5.4 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCcchhHHHHHHh
Q 006071 625 DKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
.+|+.++...|..+.|..+.+..
T Consensus 1188 ~~Ll~~l~~~g~~eqa~~Lq~~f 1210 (1265)
T KOG1920|consen 1188 KRLLEVLVTFGMDEQARALQKAF 1210 (1265)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Confidence 35999999999999996554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.2 Score=36.24 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
...++..+...+.......+++.+...++.++...+.++..|++.+ ..+..+.++. . .+......++..|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 4556667777777888888888887776667777888888887653 3444444442 1 2333344567777777
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFED-GRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
+-++++..++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777776521 12222333333 6777777766652 15556666665554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.1 Score=34.91 Aligned_cols=137 Identities=15% Similarity=0.245 Sum_probs=69.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc-cccHHHHHHHHHh
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME-ASSYNPMIQHLCH 392 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 392 (662)
-.|..++..++..+... +.+..-+|.++--....-+-+-..++++.+-... ..+ -.....++.+++.
T Consensus 14 ldG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF---------Dis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF---------DISKCGNLKRVIECYAK 81 (161)
T ss_dssp HTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS----------GGG-S-THHHHHHHHH
T ss_pred HhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhc---------CchhhcchHHHHHHHHH
Confidence 34666666666666655 2344555555555444445555555555541110 000 0112344444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 472 (662)
.+.. .......+..+...|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++
T Consensus 82 ~n~~-----------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 82 RNKL-----------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp TT--------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hcch-----------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 4322 233444556666777777777777777652 3567777777788888888888888887
Q ss_pred HHHHHcCC
Q 006071 473 DSMIEDGH 480 (662)
Q Consensus 473 ~~~~~~~~ 480 (662)
.++-+.|+
T Consensus 144 ~~ACekG~ 151 (161)
T PF09205_consen 144 KEACEKGL 151 (161)
T ss_dssp HHHHHTT-
T ss_pred HHHHHhch
Confidence 77777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=2 Score=37.66 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 304 VFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
.+..-...|..+|..+.|-..++..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3344444455555555444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.71 Score=45.83 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=41.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006071 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252 (662)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (662)
+.|+++.|.++..+ ..+...|..|.+.....|+++-|++.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44555555444322 12444555555555555555555555544321 2334444445555544444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (662)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 290 (662)
+.+.....|- ++..+.++.-.|+.+++.+++.
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444443331 2333333334455555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.054 Score=33.37 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=4.6
Q ss_pred CCHHHHHHHHHHH
Q 006071 34 KNSEHALQFFRWV 46 (662)
Q Consensus 34 ~~~~~A~~~~~~~ 46 (662)
|++++|.+.|+.+
T Consensus 15 G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 15 GQPDEAERLLRRA 27 (44)
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.1 Score=37.16 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCChhhHH------HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcC
Q 006071 563 EKGKTIAAVKLLDFCLGRDCIIDLASYE------KVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 635 (662)
..+++.+|+.+|++.......++..-|. ..+-+++..++.-.+...+++..+..+. .+.... .++..+...-
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc-kflk~L~~ai 244 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC-KFLKDLLDAI 244 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH-HHHHHHHHHH
Confidence 3466677777776666554444322221 1111222234444444555554443222 122222 2444444443
Q ss_pred CcchhHHHHHHhhhhc
Q 006071 636 NTKQADILSRMIRGEM 651 (662)
Q Consensus 636 ~~~~a~~~~~~~~~~~ 651 (662)
+-++.+.+.+..+..+
T Consensus 245 eE~d~e~fte~vkefD 260 (288)
T KOG1586|consen 245 EEQDIEKFTEVVKEFD 260 (288)
T ss_pred hhhhHHHHHHHHHhhh
Confidence 4444455555554333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.99 E-value=1 Score=44.71 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
.+.++..+-+.|.++.|+++...-. .-.+...+.|+++.|.++.++. ++...|..|......
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4445555555555555555432211 1123334455555555443322 244455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
.|+++-|.+.|.+... |..++-.|...|+.+...++.+....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555544331 23333344444555444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=4.2 Score=39.85 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHH
Q 006071 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY-GKKGIVQESVKIFD 115 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~ 115 (662)
..-..+|+.+..+ ++.|+..|...+..+.+.+.+.+...+|..|....+. ++..|....... -..-+++.|..+|.
T Consensus 88 ~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHH
Confidence 4556677777666 4778999999998888888888999999888876543 566665554433 33344888888888
Q ss_pred HHHHcCCCcCHHhHHHHH
Q 006071 116 IMKQLGVERSVKSYDALF 133 (662)
Q Consensus 116 ~~~~~g~~~~~~~~~~l~ 133 (662)
+..+.+ +.++..|-...
T Consensus 165 rgLR~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 165 RGLRFN-PDSPKLWKEYF 181 (568)
T ss_pred HHhhcC-CCChHHHHHHH
Confidence 887754 33444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.084 Score=32.50 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLI 421 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (662)
+..+...|...|++++|..+|+++.+..|.++..+..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 445555566666666666666666666655555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.62 E-value=6.4 Score=40.69 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL 597 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 597 (662)
+.+.-+.-+...|+..+|.++-.+. -.|+-. --+.+|...+++++-.++.+ . ..+|..|.-...++.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAk---s---kksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAK---S---KKSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHh---c---cCCCCCchhHHHHHH
Confidence 3445556677888888888776554 344422 22446677888888777665 1 223666777788889
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHH
Q 006071 598 AAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADIL 643 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (662)
+.|+.+||.+++-++.... ..+.+|...|++.+|..+
T Consensus 756 ~~~n~~EA~KYiprv~~l~---------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ---------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccCChH---------HHHHHHHHhccHHHHHHH
Confidence 9999999998887743221 367788888888888443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.57 E-value=7.4 Score=41.21 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCCCCC--HHhHHHHHHHHH-hcCChHHHHHHHHhcccCCCCCCH-----HHHHHHHHHHHhcCChh
Q 006071 37 EHALQFFRWVERAGLFNHD--RETHLKMIEILG-RVGKLNHARCILLDMPKKGVQWDE-----DMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~ 108 (662)
..|+.-++-+.+...++|. ..+...++.++. ...+++.|+..+++....--.++. .+...++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456666666644323332 235667777776 678999999999876433222221 12334556666666555
Q ss_pred HHHHHHHHHHHcCCC----cCHHhHHHH-HHHHHHcCChhHHHHHHHHHHhCC---CCcCHHHHHHHHHHHH--hcCCHH
Q 006071 109 ESVKIFDIMKQLGVE----RSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEG---IEPTRHTYNVMLWGFF--LSLKLE 178 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~ 178 (662)
|...++...+.--. +-...+..+ +..+...+++..|.+.++.+.... ..|-..++..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876653111 112222222 222333478999999998886532 2344455555555544 345566
Q ss_pred HHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--hhcCChHHHHHHHHHHH
Q 006071 179 TAIRFFEDMKSRG---------ISLDVVTYNTMINGY--NRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 179 ~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~ 223 (662)
++.+.++.+.... -.|-..+|..+++.+ ...|++..+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776663321 133456677776654 45677767766655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.2 Score=34.93 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..++.+++..++..+.-..+. ....-..-...+...|+|.+|+.+++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555544433222 111111122234445555555555555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.5 Score=39.68 Aligned_cols=90 Identities=21% Similarity=0.121 Sum_probs=62.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HH-----HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF----DS-----LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~-----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (662)
=..-+...|++++|..-|...+. .-|.. .+ -+.++.+.++++.|+.-..++++.++..... ....+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA-l~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA-LERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH-HHHHHHH
Confidence 34557788899999988888876 23321 11 1224456788888888888888876433322 2345778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 006071 596 LLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
|-+..++++|++=|+++++..+
T Consensus 178 yek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCc
Confidence 8888999999999999888754
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.6 Score=41.55 Aligned_cols=104 Identities=15% Similarity=0.249 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhh
Q 006071 159 PTRHTYNVMLWGFFL-----SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS 233 (662)
Q Consensus 159 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 233 (662)
.|..+|...+..+.. .+.++-....+..|.+.|+..|..+|+.|+..+-+..-.- ..+|+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~------------ 130 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK------------ 130 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH------------
Confidence 344455444444432 2445555555666666677777777777766654322110 001111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 006071 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (662)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 281 (662)
..-.|-+ +-+=++.++++|...|+.||..+-..++.++.+.+-
T Consensus 131 ---~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 ---VFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ---HHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 112345666666666666666666666666655443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.096 Score=29.96 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=25.7
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006071 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHAR 76 (662)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 76 (662)
|+.+++.+ |.++.+|..+..+|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666766 788888888888888888888875
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.083 Score=30.23 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAF 434 (662)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 434 (662)
|++.++..|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666777777777777777777777664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.68 Score=41.25 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006071 195 DVVTYNTMINGYNR-----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY 269 (662)
Q Consensus 195 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (662)
|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+.. +.|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence 56666666666543 4666777777888888888889889988888764322 12221 12
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 006071 270 TALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 270 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (662)
..+...|-+ +-.=+++++++|...|+-| |..+-..++.++.+.+..
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMP-DKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCC-chHHHHHHHHHhcccccc
Confidence 222222222 2234789999999999999 999999999999887753
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.63 E-value=4.4 Score=39.82 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=88.2
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHhc--CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC
Q 006071 8 TRLQNKIRALVPQFDHNLVYNVLHG--AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85 (662)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (662)
..+..+-+.+..++++..-+-+|.. +....+|.++|+++.+.+. . .+..- ......|. .++....+
T Consensus 186 aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE--~---~lg~s-~~~~~~g~------~~e~~~~R 253 (539)
T PF04184_consen 186 ARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGE--A---SLGKS-QFLQHHGH------FWEAWHRR 253 (539)
T ss_pred HHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH--H---hhchh-hhhhcccc------hhhhhhcc
Confidence 3344444445555566555555554 4567889999988877541 1 11000 00011111 12222233
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHH
Q 006071 86 GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVE-RSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHT 163 (662)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~ 163 (662)
+..+-..+-..+..++.+.|+.++|++.|.+|.+.... .+......|+.++...+.+.++..++.+.-....+. -...
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 33333455566777788899999999999999764322 234577789999999999999999999975432222 2334
Q ss_pred HHHHH
Q 006071 164 YNVML 168 (662)
Q Consensus 164 ~~~ll 168 (662)
|+..+
T Consensus 334 YTaAL 338 (539)
T PF04184_consen 334 YTAAL 338 (539)
T ss_pred HHHHH
Confidence 55544
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.30 E-value=7 Score=36.44 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006071 164 YNVMLWGFFLSLKLE---TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 225 (662)
+..++.++...+..+ +|..+++.+.... +-...++..-+..+.+.++.+.+.+++..|...
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344444554444433 3334444443321 112334444445555556666666666666543
|
It is also involved in sporulation []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=2.4 Score=35.83 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=60.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (662)
+-+...|++++|..-+...+..- ++. ...|..-..++.+.+.++.|+.-..+.++.++.- ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHh
Confidence 34567788888888777777532 221 1223333345677788888888888777776652 2233334556777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 532 RGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
..++++|++-|+++++ ..|...
T Consensus 181 ~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHH--hCcchH
Confidence 7788888888888877 555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.25 E-value=4.3 Score=33.84 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006071 114 FDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGIS 193 (662)
Q Consensus 114 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 193 (662)
+..+.+.+++|+...+..+++.+.+.|++..... ++..++-+|.......+-.+. +....+.++--+|.++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH---
Confidence 3444445556666666666666666665433322 233334444443333322221 2223333333333332
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006071 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (662)
Q Consensus 194 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 222 (662)
=...+..+++.+...|++-+|.++.+..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112334444555555555555555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.6 Score=37.25 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=41.0
Q ss_pred cCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC---CCCCCHHH
Q 006071 17 LVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK---GVQWDEDM 93 (662)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~ 93 (662)
...+.++.+++-.-.+.|+ +.|+..|-.+...+ .-.++.....++..|. ..+.+++.+++-+.... +-.+|+.+
T Consensus 104 tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 104 TKNSQDPYLLYYHWSRFGD-QEALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred HccCCCccHHHHHhhccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 3334444444444444444 44555554444333 2233444444444333 34555555555443321 22345555
Q ss_pred HHHHHHHHHhcCChhHH
Q 006071 94 FEVLIESYGKKGIVQES 110 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A 110 (662)
+.+|+..+.+.|+++.|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 55555555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.23 Score=28.84 Aligned_cols=25 Identities=8% Similarity=-0.006 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 589 YEKVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
|..|+.+|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5578888899999999999998854
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.2 Score=40.59 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 006071 127 KSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS-----RGISLDVVTYNT 201 (662)
Q Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 201 (662)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355566666666777777777777776653 33566667777777777777777777666654 466666666665
Q ss_pred HHHH
Q 006071 202 MING 205 (662)
Q Consensus 202 ll~~ 205 (662)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=15 Score=38.93 Aligned_cols=316 Identities=9% Similarity=0.062 Sum_probs=137.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
...+.|++..+.++...+...-+ ..-..|..+... ......++....+++- .-.|.....-...+..+.+.+++.
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHccCHH
Confidence 34567778887777776643221 112223332221 1223455555544432 123333444444555566667776
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
.....+.. .+.+...--....+....|+.++|......+-..+ ...+..++.++..+.+.|.....
T Consensus 117 ~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g---------~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 117 GLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG---------KSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------CCCChHHHHHHHHHHHcCCCCHH
Confidence 65552211 13444444556667777788776766655552111 12344667777777666655443
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh---------CCCCCCHHhHHHHHHHHH--hcCChHH
Q 006071 400 EIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR---------RGVPRDADAYICLIESYL--RKGEPAD 467 (662)
Q Consensus 400 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~--~~~~~~~ 467 (662)
. ++.++...- ..+......+...+. .+.....+.+..+.. ..++++...-..++-++. ...+.+.
T Consensus 183 d-~w~R~~~al~~~~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 183 A-YLERIRLAMKAGNTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHH
Confidence 3 222222211 233333333333221 111111111111111 011122211111111211 2344566
Q ss_pred HHHHHHHHHHc-CCCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 468 AKTALDSMIED-GHSPAS--SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDL 544 (662)
Q Consensus 468 a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (662)
|...+...... ++.+.. .++..+.......+...++...++....... +......-+..-.+.++++.+...+..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 66666665332 222221 1222222222222213455555554332221 233333334444467777777666666
Q ss_pred HHhC-CCCCCHHHH-HHHHhccCCHHHHHHHHHHHhc
Q 006071 545 MMQS-GSVPNFDSL-LSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 545 ~~~~-~~~p~~~~~-~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
|... .-.+.+..+ +.++...|+.++|..+|+++..
T Consensus 338 L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 338 LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5431 112222332 3344556777777777776533
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.2 Score=40.47 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHhHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADAYICLI 456 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 456 (662)
++..++..+...++.+.+...++.+....|.+...|..++.+|...|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4566777788888888888888888888888888899999999999998888888887654 57777777666555
Q ss_pred HH
Q 006071 457 ES 458 (662)
Q Consensus 457 ~~ 458 (662)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 54
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.59 E-value=9 Score=35.85 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhCCCH-
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVA--VE----RADDALRIFDEMKSFD---VKPNAVTYTALLPGLCDAGKM- 282 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~- 282 (662)
++...+++.|.+.|+..+..+|-+....... .. ....+..+|+.|++.. -.++..++..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666667777766666555443222222 12 2456777888887643 12344555555433 33333
Q ss_pred ---HHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006071 283 ---VEVQKVLREMVERYIPPKDN-SVFMKLLGVQCKSGH--LNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (662)
Q Consensus 283 ---~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (662)
+.++.+|+.+.+.|+...|. ...+.++.......+ ...+..+++.+.+.+++.....|..+.-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 45677777777767666554 333333333322222 346778888888888888877776655433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.34 E-value=8.1 Score=34.72 Aligned_cols=199 Identities=17% Similarity=0.083 Sum_probs=129.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH-H
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMK--KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE-S 458 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 458 (662)
........+...+....+...+..... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 445555566666777777777776665 335566667777777777777888888888777643332 122222233 6
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGH--SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (662)
+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 7788888888888888754211 01233333334446677888888888888877633323556677888888888888
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Q 006071 537 EALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 537 ~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (662)
.|...+..... ..|. .......+...+..+++...+.+.....+.
T Consensus 220 ~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99888888876 3332 223444444667788888888888776543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.11 E-value=2 Score=36.62 Aligned_cols=61 Identities=8% Similarity=0.157 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
.+..+...|.+.|+.+.|.+.|.++.+....+ -...+-.+++.....|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555566666666666666655542222 12333445555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.46 Score=27.02 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|..++.++...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.98 E-value=7.5 Score=33.55 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=100.5
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHH
Q 006071 70 GKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYF 149 (662)
Q Consensus 70 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 149 (662)
|-+.-|+-=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|.. ---|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 3334444334443333222 4668888888888889999999999998886533332333333333 2458888888877
Q ss_pred HHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHH-hhcCChHHHHHHHHHHHHCC
Q 006071 150 NKMLSEGIE-PTRHTYNVMLWGFFLSLKLETAIRFF-EDMKSRGISLDVVTYNTMINGY-NRFKKMDEAEKLFAEMKEKN 226 (662)
Q Consensus 150 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~ 226 (662)
.+..+.++. |-...|-.+. -..-++.+|..-+ ++..+. |..-|...|-.+ .-.=..+.+.+-...-...+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 777665322 2222222222 1334566665443 444433 555555444333 22222222222111111110
Q ss_pred ---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 227 ---IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 227 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
-+.-+.||.-|.+.+...|+.++|..+|+-....+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 01124678889999999999999999998887654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.45 Score=27.62 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
|..|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.47 Score=26.90 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
..+..++..+...|++++|++.+++.+...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 356678999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.5 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.++.+|...|+.+.|.+++++.+..+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 478888889999999998888886654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.65 E-value=6.7 Score=32.27 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=22.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
..++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 334444444444444444443333333333444444444444444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.61 E-value=7.1 Score=32.56 Aligned_cols=135 Identities=11% Similarity=0.165 Sum_probs=63.8
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006071 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (662)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 297 (662)
.++.+...+++|+...+..++..+.+.|.+.. +..+...++-+|.......+-.+. +.+..+.++--+|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 34444455566666666666666666665443 233334444444444333332222 2223333333334332
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
-...+..++..+...|++-+|..+....... +......++++..+.++...-..+++-..+.+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1112344555566666666666666554221 11122445555555666555555555554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.40 E-value=5.2 Score=40.18 Aligned_cols=153 Identities=18% Similarity=0.099 Sum_probs=86.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+.-.|+++.|-.++..+. ......++..+.++|-.++|+++- +|+.-. .....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHH
Confidence 3444566666665443321 334455666666777777666542 121111 12234567777
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
.|.++..+. .+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 776665544 3556677777777777777777777766532 3455555666666665555555555
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006071 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (662)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 222 (662)
+.|.. |.. .-+|...|+++++.+++..-
T Consensus 720 ~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKN-NLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhccc-chH-----HHHHHHcCCHHHHHHHHHhc
Confidence 55432 222 22445567777777776554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.40 E-value=4.1 Score=34.70 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA--VTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
.+..+...|.+.|+.++|++.|.++......+.. ..+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555666666666666666665544322222 2344555555556666666655555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.27 E-value=21 Score=37.27 Aligned_cols=255 Identities=15% Similarity=0.048 Sum_probs=146.6
Q ss_pred HcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG-----QTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
....+.+.|+.+|+.+.+..... ...+ .......+..+|.+.. +...|..++.+....+.++.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~-a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKA-ATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHH-Hhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34556777777777664410000 0111 2334556666776643 5677999999999998777766655554
Q ss_pred HHHh-cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc
Q 006071 423 GHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (662)
Q Consensus 423 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (662)
.... ..+...|.++|....+.|.. ..+-.+..+|. -..+...|..++++..+.| .|...-....+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 4444 35678999999999988733 23322333222 2346788999999998877 3443333334444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH---Hh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cC
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAK-ILEAL---LM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KG 565 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~---~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g 565 (662)
++++.+...+..+.+.+... ..+-.. ++... .. ..+.+.+..++.+....|..--...+.+.+.. ..
T Consensus 411 ~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCC
Confidence 77888777777777665542 222111 11111 11 11455666666666554443333444444432 23
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh-cC--CHHHHHHHHHHHHHcC
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-AG--KTLNAYSILFKIMEKG 616 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~ 616 (662)
+.+.|...+.++..++ ....+ .++.++-. .| ....|.+++.+.....
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 6788888888777765 33333 35555543 12 2577888888776643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.61 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455556666666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.65 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
..|..++.++...|++++|++.+++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356789999999999999999999988753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.8 Score=42.01 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=9.2
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 006071 528 ALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~ 546 (662)
-|.+.|.+++|+..|.+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i 124 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI 124 (536)
T ss_pred hhhhccchhHHHHHhhhhh
Confidence 3445555555555544433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=17 Score=35.56 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=67.5
Q ss_pred HHcCChhHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHH
Q 006071 137 LRRGRYMMAKR-YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 137 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 215 (662)
...|+.-.|-+ ++..+....-.|+.....+. .+...|+++.+.+.+....+. +.....+...++....+.|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34566665543 44444433233444333333 344667888777777655443 223455666777777777888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 216 EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
..+-+-|....++ +...........-..|-++++...++++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8777777655443 3333333233333456677777777776543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.50 E-value=26 Score=37.08 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=18.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHH
Q 006071 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILR 138 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 138 (662)
.|.|+|++++|.++....... .......+...+..+..
T Consensus 120 y~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 120 YCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 445667777666666433321 22333445555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.42 E-value=27 Score=37.03 Aligned_cols=87 Identities=21% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHh---c
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLR---K 462 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 462 (662)
...+.-.|+++.|.+++-. ......+...+...+..|.-..-.+... ..+.... -.|.+..+..|+..|.+ .
T Consensus 265 f~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 3445567999999988877 1111333444433333332221111111 2222211 01122456677777765 4
Q ss_pred CChHHHHHHHHHHHH
Q 006071 463 GEPADAKTALDSMIE 477 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~ 477 (662)
.++.+|.+.+--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 567788887776653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.30 E-value=25 Score=36.64 Aligned_cols=180 Identities=18% Similarity=0.102 Sum_probs=90.4
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS--KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 472 (662)
+...|.++|..+...|......+.+++-... -..+...|..++++..+.| .|...--...+..+.. +.++.+...+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 4567777777777766443333332222222 2346777788887777776 2222222222333333 6666666666
Q ss_pred HHHHHcCCCCcHHhHHHHHHHH---Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---C-CHHHHHHH
Q 006071 473 DSMIEDGHSPASSLFRSVMESL---FE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---G-HVEEALGR 541 (662)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~ 541 (662)
..+.+.|.......-..++... .. ..+...+...+.+....| +......+..+|... + +++.|...
T Consensus 421 ~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~ 497 (552)
T KOG1550|consen 421 LYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQ 497 (552)
T ss_pred HHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHH
Confidence 6555544332211111111111 00 224555666666655443 344445555555433 2 57777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHh----ccCCHHHHHHHHHHHhcCC
Q 006071 542 IDLMMQSGSVPNFDSLLSVLS----EKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~----~~g~~~~A~~~~~~~~~~~ 581 (662)
+......+ .-....+...+. ... +..|.++++++...+
T Consensus 498 y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 498 YARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcC
Confidence 77766655 111122333332 234 788888888777754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.21 E-value=2 Score=39.61 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=53.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC
Q 006071 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR 499 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (662)
-..-|.++|.+++|+..+....... +.+++++..-..+|.+...+..|..-....+..+ ..-...|+.-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3456777788888888887766642 2277777777778888777777766666555321 0011222222223333455
Q ss_pred HHHHHHHHHHHHHc
Q 006071 500 VQTASRVMKSMVEK 513 (662)
Q Consensus 500 ~~~a~~~~~~~~~~ 513 (662)
..+|.+-++..++.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55565555555554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.20 E-value=19 Score=35.02 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP---TVISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
...+|..++..+.+.|.++.|...+..+...+... .......-++.....|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888888889999999998888887643111 334445556777778888888888877765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.019 Score=47.24 Aligned_cols=91 Identities=10% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 006071 19 PQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98 (662)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 98 (662)
+..+...+...+...+.++....+++.+...+ ...++...+.++..|++.+..+....+++.... .. ...++
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd-----~~~~~ 77 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YD-----LDKAL 77 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHH
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cC-----HHHHH
Confidence 34445556677777788888888888887655 245677788888888888777777777763332 11 23455
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 006071 99 ESYGKKGIVQESVKIFDIM 117 (662)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~ 117 (662)
..|.+.|.++++.-++.++
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCC
T ss_pred HHHHhcchHHHHHHHHHHc
Confidence 5555666666666655554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.34 E-value=14 Score=32.08 Aligned_cols=83 Identities=20% Similarity=0.065 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 473 (662)
|-+..|.-=|.+.....|.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-+.. .-.|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHH
Confidence 44444555555666666667777777777777778888888888777776444333333333322 23467777766555
Q ss_pred HHHH
Q 006071 474 SMIE 477 (662)
Q Consensus 474 ~~~~ 477 (662)
..-.
T Consensus 158 ~fYQ 161 (297)
T COG4785 158 AFYQ 161 (297)
T ss_pred HHHh
Confidence 5544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=33 Score=36.41 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 006071 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (662)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (662)
......-+......++++.+...+..|.... .....-.--+..++...|+.++|...|+.+
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444445556666666666666553321 223333444555555566666666666665
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.15 E-value=24 Score=34.74 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChH
Q 006071 174 SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMD 213 (662)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 213 (662)
.+.++...+++..+...|.......+|.-...|.+.|...
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 4566666666666666655544455555555566655543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.98 E-value=22 Score=34.01 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh---cCCHHHHHHHHH
Q 006071 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE---DGRVQTASRVMK 508 (662)
Q Consensus 432 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~ 508 (662)
.-+.+++++.+.+. .+...+..++..+.+..+.+...+.|+++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34455666555532 355566666666666666666666666666532 2245556555554333 223445555554
Q ss_pred HHHHc------CC------CCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 006071 509 SMVEK------GV------KEN-----LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (662)
Q Consensus 509 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (662)
+.++. +. .+. ...+..+...+.++|..+.|+.+++.+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44332 11 000 12233444556688999999999998887543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.83 E-value=11 Score=30.45 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 006071 496 EDGRVQTASRVMKSMVEKGVK-ENLDLVAKILEALLMRGHVEEALGRIDLMMQSG 549 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 549 (662)
..++.+++..+++.+.-..++ +...++ -...+...|+|++|+.+++++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccC
Confidence 366777777777776655333 122233 2334566777777777777776644
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.35 E-value=4.4 Score=37.03 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=71.7
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (662)
...+....+..-....+++.+...+-++.... .++. +....++.+.+ -++++++.++..=...|+-||..++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555556778888888888877654 1221 22233444433 477899999988889999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 006071 455 LIESYLRKGEPADAKTALDSMIED 478 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~ 478 (662)
+++.+.+.+++.+|..+.-.|+..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999888877754
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.85 E-value=0.88 Score=23.99 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 006071 590 EKVLDALLAAGKTLNAYSILF 610 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~ 610 (662)
..++.++...|++++|...++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 457777777888888777765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.77 E-value=4.9 Score=29.46 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (662)
++.+-++.+....+.|++....+.+.+|.+.+|+..|+++++....+. ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555555555667777777777777777777777777777666441 11334454444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.69 E-value=25 Score=33.05 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHH--cC----ChhHHHHHHHHHHhC
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILR--RG----RYMMAKRYFNKMLSE 155 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~ 155 (662)
+...+++.+.+.|+..+..+|.+....... .. ....|..+|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344555666666655555444443222222 11 134455566666554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.6 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.|..++..+...|++++|.+.+++.++-
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667888899999999999999887754
|
... |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.4 Score=30.74 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 563 EKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
.+.+.++|+..|+++++..+.+. ......++.+|+..|++.+.+++--+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776644433 34455566777777777776665443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.43 E-value=11 Score=33.32 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 006071 568 IAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 620 (662)
..|...|+++.+....+ .......++....+.|++++|.+.+.+++..+..+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34555566666543221 134445788888899999999999999988776544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.17 E-value=14 Score=29.85 Aligned_cols=51 Identities=14% Similarity=-0.136 Sum_probs=29.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
.++.+++..+++.+.-..|..+..-..-...+...|++++|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 556666666666665555544444444444555566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=26 Score=32.60 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALL 273 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 273 (662)
+..+-...+.++.+.++ ..+...+-.+... ++...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444444444444 3344444343332 23333333333333321 12233443433332 23444445555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
.++.+.|+. .+...+-...+.+ + .....+.++...|+. .|...+..+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555553 3333333333321 1 223344444445543 34444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.78 E-value=32 Score=33.43 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
+|..+...+.+.|.++.|...+..+.... ...+.+...-+..+...|+..+|...++....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555544432 11233333334444444555555554444443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.4 Score=24.59 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 590 EKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
..++.++.+.|++++|.+.+++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35777788888888888888887765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.8 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.++.++..|...|++++|.+++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456788888889999999988888765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.44 E-value=14 Score=37.26 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
....+-+...|.++|-.++|+++. +++.. -.....+.|+++.|.++..+.. ++.-|..|.+
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGD 674 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHH
Confidence 446677778888888888887654 22222 1233457899999998877653 5667999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006071 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 179 (662)
+....|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. | . ...++...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-~----AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-L----AFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-h----HHHHHHHcCCHHH
Confidence 99999999999999988875 667888888888887776666666666532 2 2 2334567899999
Q ss_pred HHHHHHHHH
Q 006071 180 AIRFFEDMK 188 (662)
Q Consensus 180 a~~~~~~~~ 188 (662)
+.+++..-.
T Consensus 740 C~~lLi~t~ 748 (794)
T KOG0276|consen 740 CLELLISTQ 748 (794)
T ss_pred HHHHHHhcC
Confidence 998886653
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.36 E-value=6.3 Score=34.05 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHhHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG--VPRDADAYICLIES 458 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 458 (662)
|.+..+..+.+.+...+++...+.-.+..|.+...-..+++.++-.|++++|..-++..-+.. ..+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445556677788999999999999999989999999999999999999999998888776532 23345677777765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.1 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 520 DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.06 E-value=51 Score=35.06 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=91.0
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCc-----HHhHHHHHH--HHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHH
Q 006071 460 LRKGEPADAKTALDSMIEDGH-SPA-----SSLFRSVME--SLFEDGRVQTASRVMK--------SMVEKGVKENLDLVA 523 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 523 (662)
+-.+++..|...++.+.+... .|+ ...+...+. .+...|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 345778888888887774311 111 112222222 3445688888888887 333444444444433
Q ss_pred H--HHHHHHhCCC--HHH--HHHHHHHHHhC-CCCCCHH------HHHHHHh--ccCCHHHHHHHHHHHhcCC-CC--CC
Q 006071 524 K--ILEALLMRGH--VEE--ALGRIDLMMQS-GSVPNFD------SLLSVLS--EKGKTIAAVKLLDFCLGRD-CI--ID 585 (662)
Q Consensus 524 ~--l~~~~~~~g~--~~~--A~~~~~~~~~~-~~~p~~~------~~~~~~~--~~g~~~~A~~~~~~~~~~~-~~--~~ 585 (662)
. ++..+...+. .++ .-++++.+... ...|+.. .+..++. ..-...++...+..+++.. .. .+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 2222333332 222 55555555431 2233311 1222222 1223335655555444432 11 11
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhhH---H--HHHHHHHhcCCcchhHHHHHHhhh
Q 006071 586 ---LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT---DWKSS---D--KLIAGLNQEGNTKQADILSRMIRG 649 (662)
Q Consensus 586 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~---~--~l~~~~~~~g~~~~a~~~~~~~~~ 649 (662)
...++.+...++ .|...|..+............ ....| . .+...|...|+.++|..+......
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 222334444444 788888777666644322111 12222 1 244448889999999777666543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.28 E-value=13 Score=27.64 Aligned_cols=47 Identities=11% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+..+-+..+....+.|++....+.+.+|.+.+++..|+++++.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555567777777788888888888888888888877665
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=85.27 E-value=9.1 Score=28.28 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+...|+|++|..+.+.. +.|+.+.| ++-+-.+.|-.+.+..-+-++-.++.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw--~ALce~rlGl~s~l~~rl~rla~sg~ 99 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPW--LALCEWRLGLGSALESRLNRLAASGD 99 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHH--HHHHHHhhccHHHHHHHHHHHHhCCC
Confidence 345678888887776622 45666666 34445677777777777777666654
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.92 E-value=1.8 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666666665554
|
... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.78 E-value=62 Score=34.89 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=122.6
Q ss_pred HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc---ccHHHHHH-HHHhcCChhHHHHHHHHHHhcCC-----CCHHHH
Q 006071 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA---SSYNPMIQ-HLCHNGQTGKAEIFFRQLMKKGV-----LDPVAF 417 (662)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 417 (662)
.....++.+|..++.++...- +.....+.. ..+..+-. .....|+++.|..+.+.....-+ .....+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l----~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFL----KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHccChHHHHHHHHHHHHHh----CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 345678889988888874432 111111111 12333322 23456889999999888876542 344566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHh---HHHH--HHHHHhcCCh--HHHHHHHHHHHHcC--CCC----cH
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADA---YICL--IESYLRKGEP--ADAKTALDSMIEDG--HSP----AS 484 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~--~~a~~~~~~~~~~~--~~~----~~ 484 (662)
..+..+..-.|++++|..+.....+..-.-+... |..+ ...+...|+. ++....+....... -+| -.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 7777888889999999988877655321223332 3222 2335566633 33333333333211 111 11
Q ss_pred HhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCHHHH--
Q 006071 485 SLFRSVMESLFE-DGRVQTASRVMKSMVEKGVKENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSV--PNFDSL-- 557 (662)
Q Consensus 485 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~-- 557 (662)
.+...++.++.+ .+...++..-++......+.|-.... ..++.+....|+.++|...+.++...... |.....
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 233333444433 22223333333333333333322222 36788888999999999988887752211 332221
Q ss_pred ---HHH-H-hccCCHHHHHHHHHHHhc
Q 006071 558 ---LSV-L-SEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 558 ---~~~-~-~~~g~~~~A~~~~~~~~~ 579 (662)
+.. | ...|+.++|.....+...
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 111 1 257999998888776443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.67 E-value=30 Score=31.13 Aligned_cols=229 Identities=10% Similarity=0.092 Sum_probs=136.2
Q ss_pred CCCCCCCccccHHHHHHHH-HhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---
Q 006071 372 PQSTLDMEASSYNPMIQHL-CHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--- 443 (662)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 443 (662)
.+++..||+..=+..-.+- .+...+++|+.-|+...+.. ...-.+...++....+.+++++..+.+.++...
T Consensus 18 dds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 18 DDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred cccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445556665433322221 23458899999999988765 233446677888999999999999888877531
Q ss_pred CC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006071 444 GV--PRDADAYICLIESYLRKGEPADAKTALDSMIED-----GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--- 513 (662)
Q Consensus 444 ~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 513 (662)
.+ .-+..+.|.++.......+.+--..+++.-.+. +-+.-..|-..+...+...|.+..-.++++++...
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11 124456677777666555555444444432211 11122334456677788888888888888887653
Q ss_pred --CCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC--HHHHHHHHh-----ccCCHHHHHHHHHHH
Q 006071 514 --GVK------ENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPN--FDSLLSVLS-----EKGKTIAAVKLLDFC 577 (662)
Q Consensus 514 --~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~~~~~-----~~g~~~~A~~~~~~~ 577 (662)
|-. --.+.|..-+..|....+-..-..++++.+. ..-.|. +-.++.-|+ +.|++++|-.=|-.+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 0134566666777777776666677776664 222333 334444443 568888886555446
Q ss_pred hcCCC---CCC---hhhHHHHHHHHHhcC
Q 006071 578 LGRDC---IID---LASYEKVLDALLAAG 600 (662)
Q Consensus 578 ~~~~~---~~~---~~~~~~l~~~~~~~g 600 (662)
.+... .|. ..-|..++..+.+.|
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 55421 222 344667777777766
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.54 E-value=12 Score=27.41 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChh
Q 006071 41 QFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW-DEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 108 (662)
.-++...+.+ |.+..+...+...+...|+++.|.+.+-.+++.+... +...-..++..+.-.|.-+
T Consensus 9 ~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 9 AALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3444555555 7788888888999999999999998888888765443 3444555555554444433
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.46 E-value=63 Score=34.75 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=84.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006071 168 LWGFFLSLKLETAIRFFEDMKSRGISLDV--VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (662)
Q Consensus 168 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 245 (662)
=..|...|+++.|+++-..- |+. .++..-...|...+++..|-++|.++.+ .|..+.--+....
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 34566778888877765332 332 2334445667778888888888887742 2333444444455
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHH-----HHHH-HhCCCHH----HHHHHHHHH--------HHcCCCCCcHHHHHH
Q 006071 246 RADDALRIFDEMKSFDVKPNAVTYTAL-----LPGL-CDAGKMV----EVQKVLREM--------VERYIPPKDNSVFMK 307 (662)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~-~~~g~~~----~a~~~~~~~--------~~~~~~~~~~~~~~~ 307 (662)
+.+ +++.|-.=+-..++|...+-..+ +..+ .+.++.+ ++..-++.- ........+.....+
T Consensus 431 ~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 431 QER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 544 33332111111233433332221 2221 1222221 222211111 110011112223333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (662)
....+...|+.+....+-.-+.+ |..++.-+++.+.+.+|++++..-
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445556776666655444433 667788888888888888887664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.30 E-value=5.3 Score=36.53 Aligned_cols=94 Identities=11% Similarity=0.171 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH-----hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-----SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (662)
+...++..-....+++++...+-.++.. |+.. +-...++.+. .-++++++.++..=++.|+-||..+++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3334444444455666666666555532 2111 1112222222 23455666666555566666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 006071 168 LWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 168 l~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
|+.+.+.+++.+|.++...|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666665555543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.18 E-value=47 Score=33.06 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA--AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
++...+.+.|-+++|...+.+.... |+++...|..+++.=-. ..+...+.++++.+...-+ .+...|.....-=..
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhhcc
Confidence 3455555667777777777744443 45555555555543321 3346667777777766544 455555555555556
Q ss_pred cCCcchh-HHHHHHhhhh
Q 006071 634 EGNTKQA-DILSRMIRGE 650 (662)
Q Consensus 634 ~g~~~~a-~~~~~~~~~~ 650 (662)
.|..+.+ ...++.++-+
T Consensus 543 ~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMKTL 560 (568)
T ss_pred CCCcccccHHHHHHHHhh
Confidence 7777777 3334444433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.13 E-value=48 Score=33.09 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=28.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 006071 231 VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 295 (662)
-....+++..+..+-...-+..+..+|...| .+...|..++.+|... ..+.-..+++++++.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 3344444444444444444445555554432 2444455555555444 334444444444443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.00 E-value=35 Score=31.39 Aligned_cols=168 Identities=9% Similarity=0.134 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-cCC-hhHHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK-KGVQWDEDMFEVLIESYGK-KGI-VQESVK 112 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~-~~~A~~ 112 (662)
-++-..+++-....-...... -|..++. ++...-+|+.+|+.... ..+-.|+.+...++..... .+. ...-.+
T Consensus 112 ~~Dli~FL~~~i~~~~~~k~~-~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 112 KEDLISFLKLVIINLSSNKSF-NYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHHhccccccch-HHHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 445566666654443112222 2555553 44557788888874322 2334477788888877765 222 223334
Q ss_pred HHHHHHHc-CCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 006071 113 IFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFED---- 186 (662)
Q Consensus 113 ~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---- 186 (662)
+.+-+... |-.++..+...++..+++.+++.+-.++++..... ++..|...|..+|......|+..-...+.+.
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLL 267 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLL 267 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeE
Confidence 44444332 34677888888999999999999999999888665 5667888899999999999998877777654
Q ss_pred -HHhCCCCCCHHHHHHHHHHHh
Q 006071 187 -MKSRGISLDVVTYNTMINGYN 207 (662)
Q Consensus 187 -~~~~~~~~~~~~~~~ll~~~~ 207 (662)
+++.++..+...-..+-..+.
T Consensus 268 wikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 268 WIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred EeeecCCcCCHHHHHHHHHHHH
Confidence 234456666665555555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.96 E-value=17 Score=31.33 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=57.9
Q ss_pred HHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCChH
Q 006071 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR---GISLDVVTYNTMINGYNRFKKMD 213 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 213 (662)
.+.| -+.|...|-.+...+.--++.....+...| ...+.++++.++-...+. +-.+|...+.+|+..+.+.|+++
T Consensus 118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFG-DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3444 467888888887776555555555555555 478899999998887754 33678999999999999999998
Q ss_pred HHH
Q 006071 214 EAE 216 (662)
Q Consensus 214 ~a~ 216 (662)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.88 E-value=9.7 Score=27.99 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=12.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
.-|++....+.+++|-+.+++..|.++++.+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444444444333
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.76 E-value=6.2 Score=31.10 Aligned_cols=50 Identities=6% Similarity=-0.059 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 566 KTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+..+.+.+++..++..++ ....-.+-|+-++++.|+++.+.++++.+++.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444555566655542211 11222223666666777777777776666654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.59 E-value=9.8 Score=27.96 Aligned_cols=66 Identities=24% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHhcCCcch
Q 006071 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-DWKSSDKLIAGLNQEGNTKQ 639 (662)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 639 (662)
-+++.++.+|. +...-..++..+...|++++|++.+-.++...... +...-..|+..+...|..+.
T Consensus 10 al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 10 ALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 34455555533 44445578999999999999999999988765432 33344567777877777554
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.53 E-value=16 Score=27.11 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=62.7
Q ss_pred HHhcCC--CHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 29 VLHGAK--NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 29 ~l~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
+|...| ..++|-.+-+|+...+ .....+-..-+..+...|+|++|.++.+... .||...|..+.. .+.|.
T Consensus 12 AL~gTG~HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl 83 (115)
T TIGR02508 12 ALIGTGHHCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGL 83 (115)
T ss_pred HHHHccchHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--Hhhcc
Confidence 455555 6789999999987643 1222233334456778999999998887773 478888877654 46777
Q ss_pred hhHHHHHHHHHHHcCCCcCHHhHH
Q 006071 107 VQESVKIFDIMKQLGVERSVKSYD 130 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g~~~~~~~~~ 130 (662)
-+.+...+.++...| .|....|.
T Consensus 84 ~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 84 GSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHH
Confidence 777777787887766 34444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.27 E-value=49 Score=32.59 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=70.8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhH
Q 006071 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQE 109 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 109 (662)
-...|+.-.|-+-...++++. |.+|........++...|+++.+.+.+....+. +.....+...+++.....|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 335666666666555555554 555555555566667777777777776655432 22345566677777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006071 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (662)
Q Consensus 110 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (662)
|...-.-|....+. ++.........--..|-++++.-.|+++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77776666654432 22222222222233455667777676665543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.78 E-value=2.5 Score=22.22 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=8.7
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 006071 61 KMIEILGRVGKLNHARCIL 79 (662)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~ 79 (662)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444444444444444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.70 E-value=55 Score=32.71 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (662)
.....+++..+..+..+.-...+..+++.-+ -+...+..++.+|... ..+.-..+|+++.+..-.+...
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----------e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~ 134 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVI 134 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc----------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHH
Confidence 3334444444444444444444444443322 1222344444444444 3334444444444444333333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
-..|+..|-+ ++.+.+..+|..+.
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHH
Confidence 3333333333 44444444444443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.42 E-value=28 Score=31.64 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006071 591 KVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
.++..+++.|++.+|+.++.-+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 46677778888888877666544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.89 E-value=1.3e+02 Score=36.64 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=175.3
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMI-EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 98 (662)
..+...+..+-.+++.+..|+..++.-............+..++ ..|+..++++...-+...-.. +...+.. |
T Consensus 1383 ~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-i 1456 (2382)
T KOG0890|consen 1383 LIPSDTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-I 1456 (2382)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-H
Confidence 33455677788889999999999998511110011122344444 499999999999888774211 3333333 4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHhcCCH
Q 006071 99 ESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKL 177 (662)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~ 177 (662)
......|++..|..-|+.+.+.+ ++....++.++......|.++..+...+-.... ..+....++.+ +.+--+.+++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 45567899999999999999876 344778888888877888888888766666543 23333333332 3334567777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHH--HHHHhh--cCChHHHHHHHHHHHHC--------CCCCC-HhhHHHHHHHHHhc
Q 006071 178 ETAIRFFEDMKSRGISLDVVTYNTM--INGYNR--FKKMDEAEKLFAEMKEK--------NIEPT-VISYTTMIKGYVAV 244 (662)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~--~g~~~~a~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~ 244 (662)
+....... .+ +..+|... .....+ ..|.-.-.+.++.+.+. +..-+ ...|..++....-.
T Consensus 1535 D~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77766655 22 33333322 222222 12221111222222221 11111 12344444443322
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHH----cCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLRE-MVE----RYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
.-......+...-.......+..-|..-+..-....+..+-+-.+++ +.. .+....-...|...++...+.|.++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 11111111110000000111111222222211111111111111111 111 1223334567888888888899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhh
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (662)
.|...+-...+.+ . +..+--....+-..|+...|+.++++.++...
T Consensus 1688 ~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9988777766654 2 33444555666778999999999999886653
|
|
| >PF13934 ELYS: Nuclear pore complex assembly | Back alignment and domain information |
|---|
Probab=81.85 E-value=33 Score=30.67 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=65.0
Q ss_pred HHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 006071 522 VAKILEAL--LMRGHVEEALGRIDLMMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (662)
Q Consensus 522 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (662)
+...++++ ...+++++|++++- .....|+.. .++.++...|+.+.|..+++ +..... .+..... +......
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~-~~~p~l-~s~~~~~-~~~~~La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLR-AVGPPL-SSPEALT-LYFVALA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHH-hcCCCC-CCHHHHH-HHHHHHH
Confidence 33344444 45678888887762 223445543 57888888899999999998 433221 1222222 3333467
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCC
Q 006071 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (662)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (662)
.|..-||..+.++..+... ...+..++..+.....
T Consensus 153 ~~~v~EAf~~~R~~~~~~~---~~l~e~l~~~~~~~~~ 187 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELR---RRLFEQLLEHCLEECA 187 (226)
T ss_pred cCCHHHHHHHHHhCchhhh---HHHHHHHHHHHHHHhh
Confidence 7999999999888666432 2344457776665543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.81 E-value=39 Score=30.41 Aligned_cols=187 Identities=14% Similarity=0.123 Sum_probs=113.7
Q ss_pred hcCChhHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCcHHhHHHHHHHHHhc
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPR---DADAYICLIESYLRKGEPADAKTALDSMIED---GH--SPASSLFRSVMESLFED 497 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 497 (662)
+...+++|+.-|+...+..... .......++..+.+.+++++....+.++..- .+ .-+..+.+++++....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999999888743221 2345567888999999999998888887631 11 12455677777776666
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhCCC----CCCH---HHHHH-----
Q 006071 498 GRVQTASRVMKSMVEK--GVKENLDLV----AKILEALLMRGHVEEALGRIDLMMQSGS----VPNF---DSLLS----- 559 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~--~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~---~~~~~----- 559 (662)
.+.+--.++++.-++. ..+ |...| ..+...|...|.+.+-.++++++-.+-- ..+. ..++.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 6666666666655443 111 22222 4677888888888887777777664211 1111 12333
Q ss_pred --HHhccCCHHHHHHHHHHHhcCC-CCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 006071 560 --VLSEKGKTIAAVKLLDFCLGRD-CIIDLASYE----KVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 560 --~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
.|-.+.+-..-..++++++... --|.|.... .=+....+.|++++|..-|-...
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 3345566666777788777542 122333332 11234557899999876665544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.42 E-value=51 Score=31.52 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=16.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHCC
Q 006071 200 NTMINGYNRFKKMDEAEKLFAEMKEKN 226 (662)
Q Consensus 200 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 226 (662)
..+...+...|..+.|..+++.+.+.+
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 334444556677777777777766654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.97 E-value=13 Score=31.22 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.+++|..+|+++++. +|+...|..-.+.. .+|-++..++...
T Consensus 95 ~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 95 YFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 466777777777776 44555554333332 2355555554444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.58 E-value=13 Score=31.18 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhc
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRV 69 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (662)
++.|.+.++.....+ |.+...+..-..++...
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHH
Confidence 567777777766666 77888776666555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.44 E-value=52 Score=30.94 Aligned_cols=115 Identities=15% Similarity=-0.005 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCH
Q 006071 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMR----G---HVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKT 567 (662)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~ 567 (662)
+..+|..+++.+.+.|..+.......+...|..- + +...|...+.+....+.......+...|.. ..+.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 6667777777776665543212223344434332 1 224677777777766533334445544432 4488
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCC
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG---------------KTLNAYSILFKIMEKGG 617 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 617 (662)
++|..+|+++.+.+. ......+. .++..| +...|...+......+.
T Consensus 208 ~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 208 KKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 899999998888865 33333455 566555 55556666666555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.04 E-value=0.9 Score=37.23 Aligned_cols=13 Identities=15% Similarity=-0.187 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHhc
Q 006071 415 VAFNNLIRGHSKE 427 (662)
Q Consensus 415 ~~~~~l~~~~~~~ 427 (662)
...+.++..|++.
T Consensus 43 ~~~~~L~~ly~~~ 55 (143)
T PF00637_consen 43 DLHTLLLELYIKY 55 (143)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhc
Confidence 3333333333333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.1 bits (219), Expect = 2e-18
Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 5/224 (2%)
Query: 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKL---FAEMKEKNIEP 229
L L+ +S ++ A L ++K
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE-VQKV 288
T+ Y ++ G+ + + + +K + P+ ++Y A L + + +++
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFC 348
L +M + LL + ++ L A V + L+ +
Sbjct: 224 LEQM-SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282
Query: 349 KAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392
+ KL L + + Q +++ + ++
Sbjct: 283 AKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTL 326
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.3 bits (204), Expect = 1e-16
Identities = 29/252 (11%), Positives = 76/252 (30%), Gaps = 4/252 (1%)
Query: 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113
+ + + +++ R+ A C+ + E+ L++ K +
Sbjct: 55 GEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAP 114
Query: 114 FDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK---MLSEGIEPTRHTYNVMLWG 170
Q + + A FK L + +A + T YN ++ G
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 171 FFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA-EKLFAEMKEKNIEP 229
+ + + +K G++ D+++Y + R + E+ +M ++ ++
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289
+ ++ ++ P V + LL + V K+
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
Query: 290 REMVERYIPPKD 301
+ +
Sbjct: 295 LPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 1e-13
Identities = 34/241 (14%), Positives = 75/241 (31%), Gaps = 5/241 (2%)
Query: 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILL---DMPKKGVQWD 90
K S Q + ++ L + +L A +L+ +K
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM-MAKRYF 149
DM+ ++ + ++G +E V + ++K G+ + SY A + + R+ + +R
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 150 NKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209
+M EG++ V+L + L+ + V + ++
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY 269
KL +K + + V V + E+K +
Sbjct: 285 DGRVSYPKLHLPLKTLQCLFEKQLH-MELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 270 T 270
Sbjct: 344 Q 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 4e-10
Identities = 24/195 (12%), Positives = 65/195 (33%), Gaps = 5/195 (2%)
Query: 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAE---- 400
E + + KL + + Q+ L + + Q A
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 401 IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460
+ Q K+ +L +N ++ G +++G ++ ++ G+ D +Y ++
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 461 RKGEPA-DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL 519
R+ + A + L+ M ++G + ++ ++ +V +
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 520 DLVAKILEALLMRGH 534
+K+L + +
Sbjct: 272 VNTSKLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 4e-07
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 3/132 (2%)
Query: 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD---SMI 476
L++ + + D + + + + L + A L
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 477 EDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536
+ ++ +VM G + V+ + + G+ +L A L+ + +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 537 EALGRIDLMMQS 548
+ R M
Sbjct: 218 GTIERCLEQMSQ 229
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 7e-05
Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 5/146 (3%)
Query: 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKI---MGRRGVPRDADAYIC 454
+ + + + A ++ + ++ D Y
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR-VQTASRVMKSMVEK 513
++ + R+G + L + + G +P + + ++ + + T R ++ M ++
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 514 GVKENLDLVAKILEALLMRGHVEEAL 539
G+K L +L + R V +A+
Sbjct: 231 GLKLQ-ALFTAVLLSEEDRATVLKAV 255
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 2e-16
Identities = 75/500 (15%), Positives = 156/500 (31%), Gaps = 121/500 (24%)
Query: 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153
FE Y K I+ F V ++D K + + +++K + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAF-----------VDNFD--CKDVQDMPKSILSKEEIDHII 55
Query: 154 SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGY-NRFKKM 212
+ + + L+ LS + E +F E+ + + Y +++ ++
Sbjct: 56 ---MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-------VLRINYKFLMSPIKTEQRQP 105
Query: 213 DEAEKLFAEMKEK--NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270
+++ E +++ N Y V R L++ + N +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN--------VSRLQPYLKLRQALLELRPAKNVLID- 156
Query: 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF-MKLLGVQCKSGHLNAAADVLKAMI 329
G+ +GK V + D +F + L + N+ VL+ +
Sbjct: 157 ----GVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQ 203
Query: 330 RL----------------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI----- 368
+L +I + K++ Y+ + +L + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 369 ----IL---RPQSTLD--MEASSYNPMIQHLCHNGQTGKA-EIFFRQL-MKKGVLDPVAF 417
IL R + D A++ + + H + + + L + L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV- 322
Query: 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-------DADAYICLIESYLRKGEPADAKT 470
NP I+ R G+ + D +IES L EPA+ +
Sbjct: 323 --------LTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 471 ALDSM-I--EDGHSPASSLFRSVMESLFEDGRVQTASRVM-----KSMVEKGVKEN---- 518
D + + H P ++ ++ D V+ S+VEK KE+
Sbjct: 374 MFDRLSVFPPSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 519 ----LDLVAKILEALLMRGH 534
L+L K+ + H
Sbjct: 429 PSIYLELKVKLENEYAL--H 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 5e-06
Identities = 77/561 (13%), Positives = 168/561 (29%), Gaps = 198/561 (35%)
Query: 6 WTTRLQNKIRALVPQF-------DHNLVYNVLHGAKNSEHALQFFRWVE-RAGLFNHDR- 56
WT + + +V +F ++ + + + + + ++ ++E R L+N ++
Sbjct: 69 WTLLSKQE--EMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 57 ---------ETHLKMIEILGRVGKLNHARCILLD-MPKKGVQW-------DEDM-----F 94
+ +LK+ + L +L A+ +L+D + G W + F
Sbjct: 126 FAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 95 EVLIESYGKKGIVQESVKIFDIMKQL----------GVERSVKSYDALFKLILRRGRYMM 144
++ + + +++++L + S + + R +
Sbjct: 183 KIFWLNLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFF-LSLK-LETAIRFFEDMKSRGISL-DVV---- 197
+K Y N +L + + N W F LS K L T +R + D +
Sbjct: 240 SKPYENCLL---V--LLNVQNAKAWNAFNLSCKILLT---------TRFKQVTDFLSAAT 285
Query: 198 -TYNTMINGYNRFKKMDEAEKLFA---EMKE-------KNIEPTVIS------------- 233
T+ ++ + DE + L + + P +S
Sbjct: 286 TTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 234 ----------YTTMIKGYVAVERADDALRIFDEMKSF--DVK-PNAV------------- 267
TT+I+ + V + ++FD + F P +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 268 --------------------TYTALLPGL-CDAGKMVEVQKVL-REMVERY--------- 296
T + +P + + +E + L R +V+ Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 297 --IPPKDNSVFMKLLGVQCKSGHLNAAA---------------DVLKAMIRLSIPTEAGH 339
IPP + F +G HL L+ IR
Sbjct: 463 DLIPPYLDQYFYSHIGH-----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 340 YGIL-----IENF----CKAE-MYDRAIKLLDKLVEK--EIILRPQSTLDMEASSYNPMI 387
IL ++ + C + Y+R + + + K E ++ S Y ++
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC---------SKYTDLL 568
Query: 388 QHLCHNGQTGKAEIFFRQLMK 408
+ E +Q+ +
Sbjct: 569 RIALMAEDEAIFEEAHKQVQR 589
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 33/253 (13%), Positives = 60/253 (23%), Gaps = 43/253 (16%)
Query: 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272
+ +K + E V + + Y+A + L P
Sbjct: 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS----APELQAVRMF 71
Query: 273 LPGLCDAGKMVEVQKVLREMVERYIPPKD---------------------------NSVF 305
L + + L + R + + +S+
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 306 MKLLGVQC--KSGHLNAAADVLKAMIRLSI-PTEAGHYGILIENFCKAEMYDRAIKLLDK 362
+ VQ K L+ A LK M T + E A + +
Sbjct: 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 363 LVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422
+ +K + N G+ AE ++ + K P NL+
Sbjct: 192 MADKC----SPT-----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242
Query: 423 GHSKEGNPDSAFE 435
G P
Sbjct: 243 LSQHLGKPPEVTN 255
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 37/307 (12%), Positives = 73/307 (23%), Gaps = 34/307 (11%)
Query: 176 KLETAIRFFEDMKSRGISL---DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-V 231
++ + + L VV + G + + + + + P V
Sbjct: 155 TVQALLPVLC----QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQV 208
Query: 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLR 290
++ + G A+E L + ++ + P V + G + + VL
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266
Query: 291 EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350
+ + P+ G + + VL L+ P +
Sbjct: 267 QAHG--LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGKQAL 323
Query: 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410
E R + +L + L PQ + + Q
Sbjct: 324 ETVQRLLPVLCQAHG----LTPQQ-----VVAIASHDGGKQALETVQRLLPVLCQAHG-- 372
Query: 411 VLDP---VAFNNLIRGHSKEGNPDSAFE-IVKIMGRRGVPRDADAYICLIESYLRKGEPA 466
L P VA + G + + G P A
Sbjct: 373 -LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASHDGGKQALETVQ 429
Query: 467 DAKTALD 473
L
Sbjct: 430 RLLPVLC 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 662 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.96 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.84 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.84 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.77 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.65 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.52 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.22 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.05 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.74 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.73 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.56 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.53 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.47 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.47 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.15 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.09 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.07 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.98 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.73 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.56 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.55 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.21 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.19 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.18 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.1 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.01 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.98 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.31 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.15 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.0 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.82 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.58 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.56 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.83 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.51 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.37 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.65 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.6 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.19 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.63 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.45 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.3 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.08 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.03 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.18 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.54 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.43 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.35 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.56 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=343.35 Aligned_cols=487 Identities=13% Similarity=0.033 Sum_probs=361.5
Q ss_pred cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 124 RSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMI 203 (662)
Q Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (662)
+++..|+.++..+.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4445555555555555555555555555543 2344455555555555555555555555554332 34555555555
Q ss_pred HHHhhcCChHHHHHHHHHHHH---------------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 006071 204 NGYNRFKKMDEAEKLFAEMKE---------------KNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT 268 (662)
Q Consensus 204 ~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (662)
.+|.+.|++++|.++|+++.. .+.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 555555555555555553211 1234457788888888888888888888888887753 334555
Q ss_pred HHHHHHHHHhCCCHHHHHH--H-HHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 269 YTALLPGLCDAGKMVEVQK--V-LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 269 ~~~ll~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
+..+...+...+..+.+.. + +..+...+..+ ...++..++..|.+.|++++|..+|+++.+. +++..++..++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF-LRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH-HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHH-HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 5555544433322222111 1 33333322222 3344555677788889999999999988765 688999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.|.+.|++++|+.+|+++.+.. + .+..++..++.++...|+.++|..+++.+.+..+.+..+++.++.+|.
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID----P-----YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----T-----TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC----c-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 9999999999999999997643 2 256789999999999999999999999999888889999999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (662)
+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 3368899999999999999999999999998753 4477889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-----HHHHHHHHhccCCHHHHHHHHHH
Q 006071 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN-----FDSLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~ 576 (662)
+|+++.+..+. +..+|..++.+|.+.|++++|+++++++.+. +..|+ +..++.+|...|++++|.+++++
T Consensus 463 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999987655 7888999999999999999999999999874 66776 23577788899999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 006071 577 CLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN 632 (662)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (662)
+++.+ +.+...|..++.+|.+.|++++|.+.++++++..+ .+...+..|..+|.
T Consensus 542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 99876 34677888999999999999999999999998743 35555555655543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=344.08 Aligned_cols=501 Identities=12% Similarity=0.073 Sum_probs=279.7
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHH
Q 006071 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147 (662)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (662)
..|....+...+..+.. ++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 33444444444443322 35556666666666666666666666666542 3555666666666666666666666
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHhhcCCh
Q 006071 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR---------------GISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
+|+++.. .+++..+++.++.+|.+.|++++|..+|+++... +.+++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 6666543 2445566666666666666666666666632211 2233466666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH--H-HHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR--I-FDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 289 (662)
++|.++|+++.+.+ +.+...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 66666666666543 2234444444444333322221111 1 333333333333444555555666666666666666
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhh
Q 006071 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEII 369 (662)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (662)
+++.+. |.+..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++.+.+..
T Consensus 296 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 369 (597)
T 2xpi_A 296 SSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-- 369 (597)
T ss_dssp HTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred HHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--
Confidence 665543 2356666666666666666666666666665543 3455566666666666666666666666664322
Q ss_pred ccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 006071 370 LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (662)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (662)
+.+..++..++..|.+.|++++|..+|+++.+..+.+..+|+.++.+|.+.|++++|.++|+.+.+.+ +.+.
T Consensus 370 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 370 -------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp -------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred -------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 12345566666666666666666666666666556666666666666666666666666666666543 2355
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN--LDLVA 523 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~ 523 (662)
.+|..++.+|.+.|++++|..+|+++.+.. +.+..++..++..|.+.|++++|.++|+++.+. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 666666666666666666666666666532 234556666666666666666666666666554 44454 55666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (662)
.++.+|.+.|++++|+++++++.+.. |+ +..++.+|...|++++|.++++++++..+. ++..+..++.+
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 66666666666666666666666522 32 234555666666666666666666665422 33444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.8e-28 Score=238.18 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=261.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+...+...|++++|++.|+.+.+.. |.+..++..+..++...|++++|...++...+..+ .+..+|..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCC
Confidence 3456677888888888888888776 67777888888888888888888888888776543 36778888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
++++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+.++ .+...+..+...+...|++++|...|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888887754 34566788888888888888888888888876532 234456666667777788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
++.+..+ .+..+|..+..++...|++++|...|+++...+ +.+...|..+...+...|++++|...|++..... +.+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 8776532 256777777777788888888888887777653 3345667777777777777777777777766542 334
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 266 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
..++..+..++...|++++|...++++.+. .|.+..++..++..+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 566677777777777777777777777664 45556666667777777777777777776666543 455566666666
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.+.+.|++++|...++++++.. +.+..++..+..++...|++++|...|+++.+..|.++.++..+...+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF---------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC---------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 6666666666666666653211 1123345555555555555555555555555555555555555555444
Q ss_pred hc
Q 006071 426 KE 427 (662)
Q Consensus 426 ~~ 427 (662)
..
T Consensus 385 ~~ 386 (388)
T 1w3b_A 385 EM 386 (388)
T ss_dssp HT
T ss_pred Hc
Confidence 33
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-27 Score=234.68 Aligned_cols=378 Identities=15% Similarity=0.109 Sum_probs=194.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 180 (662)
+.+.|++++|.+.+..+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444444332 2233334444444444444555544444444331 22344444444444455555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
...|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555444432 1133444455555555555555555555544432 122333444444555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
. +.+..+|..+...+...|++++|...|+++.+. .|.+...+..+...+...|++++|...+.+..... |.+..++
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 1 223445555555555555555555555555553 34455555555555555555555555555555432 3344555
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 006071 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (662)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (662)
..+...|...|++++|+..|+++++.. | .+..++..+..++...|++++|...|+.+.+..|.++.++..+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~----p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ----P-----HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC----S-----SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 555555566666666666665554422 1 1233455556666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcC
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDG 498 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 498 (662)
...+...|++++|...++.+.+.. +.+..++..++.++.+.|++++|...++++.+. .|+ ...+..+...+...|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666542 234566666666666666666666666666642 232 444555555544443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=248.69 Aligned_cols=204 Identities=18% Similarity=0.249 Sum_probs=154.5
Q ss_pred HHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC---------hhH
Q 006071 75 ARCILLDMPKKGVQWDE-DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR---------YMM 144 (662)
Q Consensus 75 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~~ 144 (662)
+..+.+.+.+.+....+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455556555554443 45777788888888888888888888888888888888888888876554 567
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006071 225 KNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (662)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (662)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888777664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=244.04 Aligned_cols=205 Identities=19% Similarity=0.219 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHcCCCcCHH-hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---------HH
Q 006071 109 ESVKIFDIMKQLGVERSVK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK---------LE 178 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~ 178 (662)
.+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445556666666555443 4777788888888888888888888888888888888888888876554 56
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 006071 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK 314 (662)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (662)
+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..| +..+++.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888877777 77777777777665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-24 Score=219.64 Aligned_cols=455 Identities=11% Similarity=-0.011 Sum_probs=239.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+...+..+.+.|++++|...|+++.+.+ |+..++..+..++...|++++|...|+.+.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445555666666666666666666665543 355566666666666666666666666665543 3445556666666
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 215 (662)
+...|++++|...|+++...+. ++......++..+........+...+..+...+..|+...+..-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER---------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH----------
Confidence 6666666666666666655432 23333333333332222222222222222222111111111100000
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Q 006071 216 EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD---AGKMVEVQKVLREM 292 (662)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~ 292 (662)
.......|+.......+..+...... .....+.+...+......+.. .|++++|..+++++
T Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 152 ------KDKQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------HhhccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00000111111111111100000000 000001123334444443443 67777777777777
Q ss_pred HH-----cCCC-------CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 006071 293 VE-----RYIP-------PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360 (662)
Q Consensus 293 ~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 360 (662)
.. .... |.+..++..++..+...|+++.|...++.+.... |+...+..+...|...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66 2112 2234556666667777777777777777766653 22666666666777777777777777
Q ss_pred HHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (662)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 440 (662)
+.+++.. +.+...+..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++.+
T Consensus 294 ~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 294 DKALKLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp HHHHTTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHhhcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7664322 1234456666666667777777777777777666666666777777777777777777777766
Q ss_pred hhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 006071 441 GRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PA----SSLFRSVMESLFE---DGRVQTASRVMKSMVE 512 (662)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 512 (662)
.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++.+.+
T Consensus 365 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 6542 224556666667777777777777777666643211 11 2255666666666 6777777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 513 KGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 513 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
..+. +...+..++.+|...|++++|.+.++++.+ ..|+..
T Consensus 444 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 444 LDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred hCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 5443 455666666667777777777777766665 444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-24 Score=217.73 Aligned_cols=448 Identities=10% Similarity=0.043 Sum_probs=263.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
......+...|++++|+..|+.+++.+ |++.+|..++.++...|++++|...++++.+.++. +..++..+..++..
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHH
Confidence 445668889999999999999999986 58999999999999999999999999999987654 78899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRF 183 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 183 (662)
.|++++|...|+.+...+ +++......++..+........+.+.+..+...+..|+...+..-.........
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 157 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN------- 157 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C-------
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC-------
Confidence 999999999999999876 345555555666555544444454444444333333333322221111111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhh-
Q 006071 184 FEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA---VERADDALRIFDEMKS- 259 (662)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~- 259 (662)
.|+.......+..+...... .....+.+...+......+.. .|++++|...|+++..
T Consensus 158 ---------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 158 ---------LPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ---------CCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred ---------CchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 12222211111111100000 000001122233333333332 4555555555555544
Q ss_pred ----CCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 260 ----FDV--------KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 260 ----~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
... +.+..++..+...+...|++++|...++++... .|. ...+..++..+...|+++.|...++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 200 112334555555556666666666666666554 342 55555666666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
+.... +.+...+..+...|...|++++|+..++.+++.. + .+...+..+...+...|++++|...++.+.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD----P-----ENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC----S-----SCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----h-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65543 3445556666666666666666666666665432 1 133455556666666666667776666666
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHhHHHHHHHHHh---cCChHHHHHHHHHHHHcC
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICLIESYLR---KGEPADAKTALDSMIEDG 479 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 479 (662)
+..+.++.++..+...+...|++++|...++.+.+.... ++ ...+..+..++.. .|++++|...++++.+..
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 666666666777777777777777777777766553211 11 2366777777777 777777777777777543
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK 516 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 516 (662)
+.+..++..+...+...|++++|...++++.+..+.
T Consensus 446 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 446 -PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 234556666777777777777777777777776544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-22 Score=202.02 Aligned_cols=301 Identities=19% Similarity=0.186 Sum_probs=165.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
+...+..+...+.+.|++++|+.+|+.+.... +.+..++..+..++...|++++|...++++.+. .|.+..++..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 33444444555555555555555555544331 234444555555555555555555555555443 233445555555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHcCCcHHHHHHHHHHHHHhhhhccCCC
Q 006071 310 GVQCKSGHLNAAADVLKAMIRLSIPTEA---GHYGIL------------IENFCKAEMYDRAIKLLDKLVEKEIILRPQS 374 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (662)
.++...|++++|...|+.+.+.. +.+. ..+..+ ...+...|++++|+..|+.+++.. +
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-- 174 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----V-- 174 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T--
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--
Confidence 55555555555555555554432 1122 222222 334566677777777777665432 1
Q ss_pred CCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 006071 375 TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (662)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (662)
.+...+..+..++...|++++|...|+.+.+..+.++.++..++.+|...|++++|...|+.+.... +.+...+..
T Consensus 175 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 250 (450)
T 2y4t_A 175 ---WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 250 (450)
T ss_dssp ---TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHH
Confidence 2344566666666677777777777777666666666677777777777777777777776666542 123333333
Q ss_pred H------------HHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 455 L------------IESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE 517 (662)
Q Consensus 455 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 517 (662)
+ +..+...|++++|...++++.+.. |+ ...+..+...+.+.|++++|...++++.+..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~- 327 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD- 327 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 3 555666666666666666665432 22 224455555566666666666666666555333
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+...|..++.+|...|++++|+..++++++
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455555566666666666666666666655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-22 Score=207.47 Aligned_cols=253 Identities=12% Similarity=0.061 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcHH-------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 006071 280 GKMVEVQKVLREMVERYIPPKDNS-------VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEM 352 (662)
Q Consensus 280 g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (662)
|++++|..+++++.+. .|.+.. ++..+...+...|+++.|...++.+.+. .|+...+..+...|...|+
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcC
Confidence 3566666666666653 343332 3444555566666777777777766664 2345666666666777777
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDS 432 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 432 (662)
+++|...++.+++.. + .+..++..+...+...|++++|...++.+.+..+.+..++..+..++...|++++
T Consensus 292 ~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLN----P-----EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp CHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhccC----C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 777777777665433 1 1344566666667777777777777777777666666677777777777777777
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----cHHhHHHHHHHHHhc----------
Q 006071 433 AFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-P----ASSLFRSVMESLFED---------- 497 (662)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~---------- 497 (662)
|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... + ....+......+...
T Consensus 363 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 363 SEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 777777776643 234566677777777777777777777776643200 0 111122333445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|++++|...++++.+..+. +...+..++.+|...|++++|++.++++.+
T Consensus 442 ~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777777777777776544 556667777777777777777777777776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-22 Score=201.50 Aligned_cols=318 Identities=14% Similarity=0.089 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDI 116 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 116 (662)
..+...+..+...+ |.+...+..++..+.+.|++++|..+|+++.+..+ .+..++..+..++...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555555554 56677777777777777778878777777776543 2677777777777777778888777777
Q ss_pred HHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCH---HHHHHH------------HHHHHhcCCHHHHH
Q 006071 117 MKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR---HTYNVM------------LWGFFLSLKLETAI 181 (662)
Q Consensus 117 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~ 181 (662)
+.+.+ +.+..++..+..++.+.|++++|...|+++.+.++ .+. ..+..+ ...+...|++++|.
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77654 34566777777777777888888877777776432 122 344333 33366778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
..|+.+.+.. +.+...+..+..+|...|++++|..+|+.+.... +.+..+|..+...|...|++++|+..|+++....
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877653 2367777788888888888888888888877542 4466778888888888888888888888877542
Q ss_pred CCCCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHH
Q 006071 262 VKPNAVTYTAL------------LPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVL 325 (662)
Q Consensus 262 ~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 325 (662)
+.+...+..+ ...+...|++++|...++++... .|.+ ...+..++.++.+.|++++|...+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2334444433 67777888888888888888774 4534 336677778888888888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 006071 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (662)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (662)
+.+.... +.+...+..+..+|...|++++|...++++++
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8877653 45677788888888888888888888888864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-22 Score=209.41 Aligned_cols=403 Identities=13% Similarity=0.080 Sum_probs=309.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
......+...|++++|+..|+.+++.+ |.++.++..++.++...|++++|.+.++++...++. +..++..+..++..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 445668889999999999999999987 789999999999999999999999999999887654 78899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCcCHHH--------------
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG------IEPTRHT-------------- 163 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~-------------- 163 (662)
.|++++|...|+.+ .. .|+ .....+..+...+....|...++.+.... ..|+...
T Consensus 106 ~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 99999999999744 22 222 22233445555566677888888875421 1122221
Q ss_pred ----------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCCh
Q 006071 164 ----------------YNVMLWGFF--------LSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKM 212 (662)
Q Consensus 164 ----------------~~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~ 212 (662)
...+...+. ..|++++|..+++.+.+.... +. .++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccH
Confidence 111111111 124788999999999876432 32 3466677888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 292 (662)
++|...|+.+... .|+...+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...++++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999886 4668889999999999999999999999998764 557888999999999999999999999999
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccC
Q 006071 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372 (662)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 372 (662)
... .|.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+.+++....
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--- 410 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV--- 410 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc---
Confidence 986 56678899999999999999999999999998864 566778999999999999999999999999876521
Q ss_pred CCCCCCccccHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 373 QSTLDMEASSYNPMIQHLCHN----------GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
..........+.....++... |++++|...|+.+.+..+.++.++..+..++...|++++|...|+.+.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111111222234445566666 8888888888888887777788888888888888888888888888777
Q ss_pred CC
Q 006071 443 RG 444 (662)
Q Consensus 443 ~~ 444 (662)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-17 Score=174.92 Aligned_cols=378 Identities=13% Similarity=0.098 Sum_probs=209.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAG-LFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
....+.+...|.+.+|+++++.+.-.+ .+..+...-+.++....+. +..+..++..+..+. + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 344455556667777777776665322 1223444444455544444 445555554444321 1 223555556
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++++|..
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666777766666652 12222222222 456666666666654 135556666666666677776666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (662)
.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. .
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 66443 255666666666666677777766666555432 23333334666666666665422221 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
.++...|..+...|...|++++|..+|..+ ..|..++.++.+.|+++.|.+.+++. .+..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 344555556666666666777766666653 24666666666666666666666654 23456666
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++......+.+...|+-+..
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii-------------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV-------------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh-------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 6666666666666666554331 123345566666666777777777776666655555556666655
Q ss_pred HHHhc--CChhHHHHHHHHHhhCCCCC------CHHhHHHHHHHHHhcCChHHHH
Q 006071 423 GHSKE--GNPDSAFEIVKIMGRRGVPR------DADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 423 ~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
++++. ++..++.+.|..-. ++++ +...|..++..|.+.|+++.|.
T Consensus 1323 LyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 55553 22233333332211 1222 3455666666666666666665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-19 Score=171.95 Aligned_cols=313 Identities=12% Similarity=0.019 Sum_probs=255.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
..+...+...|++++|+..|+.+.+.. |.++.++..++.++...|++++|...++++.+..+. +...+..+...+..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 455668889999999999999999987 788999999999999999999999999999886543 77899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCC---cCHHhHHHH------------HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVE---RSVKSYDAL------------FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
.|++++|...|+.+.+.. + .+...+..+ ...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 84 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp HTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 999999999999998854 2 244455444 577889999999999999998764 34677888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH------------H
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT------------T 236 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~ 236 (662)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+.. +.+...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 3478899999999999999999999999988753 23333333 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 006071 237 MIKGYVAVERADDALRIFDEMKSFDVKPNA----VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (662)
+...+...|++++|...++++.... +.+. ..+..+..++...|++++|...+++..+. .|.+..++..+..++
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 3667889999999999999988753 2233 23455778888999999999999999886 576888999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006071 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (662)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (662)
...|++++|...|+.+.+.. |.+...+..+..+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99999999999999998864 44455555555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-18 Score=174.54 Aligned_cols=434 Identities=10% Similarity=0.079 Sum_probs=263.2
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC
Q 006071 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE 228 (662)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 228 (662)
|++.++.. +-+...|..++. +.+.|+++.|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444432 235667777776 35677777777777777765 3346677777777777777777777777777765 3
Q ss_pred CCHhhHHHHHHHH-HhcCCHHHHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHHHHH
Q 006071 229 PTVISYTTMIKGY-VAVERADDALR----IFDEMKS-FDVKP-NAVTYTALLPGLCD---------AGKMVEVQKVLREM 292 (662)
Q Consensus 229 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~ 292 (662)
|+...|..++... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666666665422 33455555443 5555433 23332 34555555554433 45666677777666
Q ss_pred HHcCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhc
Q 006071 293 VERYIPPKD--NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (662)
Q Consensus 293 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (662)
+.. |.. ...|..........|. . +...++. ...+++..|..++..........
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 652 211 1222221111111110 0 0011110 12345677777666532211111
Q ss_pred cC-CCCCCCc--------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------
Q 006071 371 RP-QSTLDME--------ASSYNPMIQHLCHN----GQT----GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK------- 426 (662)
Q Consensus 371 ~~-~~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 426 (662)
.. ...++|+ ...|...+...... ++. ..+..+|+++....|.++..|..++..+..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 00 0112232 13444444333222 222 367788998888888889999888888875
Q ss_pred cCChh-------HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhc
Q 006071 427 EGNPD-------SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFED 497 (662)
Q Consensus 427 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 497 (662)
.|+++ +|..+++...+.-.+.+...|..++..+.+.|++++|..+++++++. .|+ ...|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 68877 88889988886212346788888888888899999999999998874 343 24677777777888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHhccCCHHHHHHHH
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGRIDLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLL 574 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~ 574 (662)
|++++|..+|+++++..+. +...+...+.. +...|++++|..+|++.++. +..|. +..++..+...|+.++|+.+|
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 8899999999988876433 33333222222 33578888888888887762 22222 334566666788888888888
Q ss_pred HHHhcCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 575 DFCLGRDCII---DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 575 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
++++...+.+ ....|...+......|+.+.+.++.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888764321 2335666677777788888888888887765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-19 Score=173.44 Aligned_cols=334 Identities=11% Similarity=0.059 Sum_probs=191.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 90 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
++..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777777777777777777777654 3456677777777777777777777777776653 225566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (662)
.+...|++++|...++.+.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777765220 12333333311100 01122234555666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
++|...++++.... +.+...+..+..++...|++++|...++++... .|.+...+..+...+...|+++.|...++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666665542 345556666666666666666666666666653 454666666666666666666666666666
Q ss_pred HHhCCCCCChhhHH------------HHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC
Q 006071 328 MIRLSIPTEAGHYG------------ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ 395 (662)
Q Consensus 328 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (662)
..+.. +.+...+. .+...+...|++++|...++++++.. +.. .......+..+..++...|+
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSV-AEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSS-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCc-hHHHHHHHHHHHHHHHHccC
Confidence 65542 22222222 22444566666666666666665432 110 00000123334455556666
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+++|...++.+.+..+.++.++..+..++...|++++|...|+.+.+..+ .+...+..+..+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 349 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 66666666666665555666666666666666666666666666655431 134444444333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-16 Score=167.12 Aligned_cols=519 Identities=13% Similarity=0.114 Sum_probs=323.0
Q ss_pred HHHHHHhhcCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 9 RLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
.+..++..+. ..+..-+..++...|.+++|..+|+.+. ....+...++. ..+++++|.++++++.
T Consensus 1039 Rv~eyI~kLd-~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn----- 1103 (1630)
T 1xi4_A 1039 RVMEYINRLD-NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN----- 1103 (1630)
T ss_pred hHHHHHHHhh-hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----
Confidence 3444555555 5667778888888999999999998762 22223333332 6778899988888662
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
++.+|..+..++...|++++|+..|.+. .+...|..++..+.+.|++++|.+.+....+.. +++...+.++
T Consensus 1104 -~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 -EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 5778889999999999999999988664 567788888999999999999999988876653 3333344577
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD 248 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (662)
.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...+.+.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 8888888887544332 2 346667777888888999999999998874 37888888999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
+|.+.+++. .+..+|..+..+|...|++..|......+.. ++..+..++..|.+.|.+++|+.+++..
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv------~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888876 3567888888888888888888887664322 5666778888889999999999999887
Q ss_pred HhCCCCCChhhHHHHHHHHHcC--CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 329 IRLSIPTEAGHYGILIENFCKA--EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQL 406 (662)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (662)
.... +.....|.-+...|++. ++..++.+.|..-.+...+. ...-+...|..++..|.+.|+++.|....-.-
T Consensus 1307 L~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~----r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1307 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL----RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred hccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 7654 44555666666666653 44556666665442221100 01124456788888888888888877322111
Q ss_pred Hhc------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 407 MKK------------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 407 ~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
... ...++..|...+..|.. ....++.-+.......+. +...+..+.+.|+..-+..++..
T Consensus 1382 ~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~--~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~ 1454 (1630)
T 1xi4_A 1382 PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRS 1454 (1630)
T ss_pred cHhhhhhHHHHHHhcccccHHHHHHHHHHHHh--hChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHH
Confidence 100 14456666666666652 222333332222221111 22344445555555555555555
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH------------HHHHHcCCCCCHHHHHHHHHH-HHhCCCHHHHHHH
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVM------------KSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGR 541 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 541 (662)
....+ +...-..+.+.+....+++.-..-. +++.+. ...-+..+... |.+.|+|..|+++
T Consensus 1455 vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l 1527 (1630)
T 1xi4_A 1455 VQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVEL 1527 (1630)
T ss_pred HHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44322 1112222233333333332211111 111110 11122334333 3444777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 542 IDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
+++-. .+...+....+.|+.+.+.+++...++.+ ....|......++..-+++-+++
T Consensus 1528 ~k~d~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~~---~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1528 CKKDS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHhcc------CHHHHHHHHHHcCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCchHHHH
Confidence 65332 23445666667777777777777666652 23445455555555556665554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-18 Score=173.22 Aligned_cols=217 Identities=10% Similarity=0.114 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 006071 284 EVQKVLREMVERYIPPKDNSVFMKLLGVQCK-------SGHLN-------AAADVLKAMIRLSIPTEAGHYGILIENFCK 349 (662)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 349 (662)
.+..+|++++.. .|.++.+|..++..+.+ .|+++ .|..+|++..+.-.|.+...|..++..+.+
T Consensus 256 ~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 444555555543 34455555555555443 45544 555555555542123345555555555555
Q ss_pred CCcHHHHHHHHHHHHHhhhhccCCCCCCCc--cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH-HHh
Q 006071 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDME--ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRG-HSK 426 (662)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 426 (662)
.|++++|..+|+++++.. |+ ...|...+..+.+.|+.+.|..+|++..+..+.+...+...+.. +..
T Consensus 334 ~g~~~~A~~~~~~al~~~----------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIE----------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp TTCHHHHHHHHHHHHHSS----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCcc----------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 555555555555554321 11 12455555555555555666666665555543333333322222 223
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCc--HHhHHHHHHHHHhcCCHHHH
Q 006071 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-HSPA--SSLFRSVMESLFEDGRVQTA 503 (662)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a 503 (662)
.|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 566666666666555432 2245556666666666666666666666665532 1221 22454555555555666666
Q ss_pred HHHHHHHHHc
Q 006071 504 SRVMKSMVEK 513 (662)
Q Consensus 504 ~~~~~~~~~~ 513 (662)
..+++++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-17 Score=166.80 Aligned_cols=352 Identities=13% Similarity=0.059 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHhh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCH
Q 006071 195 DVVTYNTMINGYNR----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNA 266 (662)
Q Consensus 195 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 266 (662)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555443 44455555555555 555555555555555433 33
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChh
Q 006071 267 VTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAG 338 (662)
Q Consensus 267 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 338 (662)
..+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 444444444444 455555555555555432 34445555555544 455555555555555432 344
Q ss_pred hHHHHHHHHHc----CCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 006071 339 HYGILIENFCK----AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH----NGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 339 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 410 (662)
.+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|..+|++..+.+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 44445555544 455555555555553321 22233444444443 455555555555555442
Q ss_pred CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCC
Q 006071 411 VLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-----GEPADAKTALDSMIEDGHS 481 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~ 481 (662)
++..+..+..+|.. .+++++|..+|+...+.+ +...+..+...|... +++++|...+++..+.+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 33444455555554 556666666666655543 344555555555554 56666666666655543
Q ss_pred CcHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCH
Q 006071 482 PASSLFRSVMESLFEDG---RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
+...+..+...+...| ++++|+++|++..+.+ +...+..+...|.. .+++++|++.+++..+.+.....
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 2233444444444434 5556666666655542 34455555555555 55666666666655554321112
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHhcCC
Q 006071 555 DSLLSVLSE----KGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 555 ~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 581 (662)
..+...|.. .+++++|..+++++++.+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 334444443 456666666666655554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-16 Score=161.40 Aligned_cols=220 Identities=11% Similarity=0.007 Sum_probs=116.1
Q ss_pred CHHhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 006071 125 SVKSYDALFKLILR----RGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL----SLKLETAIRFFEDMKSRGISLDV 196 (662)
Q Consensus 125 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 196 (662)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555555555555 566666666666665543 34444455555555 556666666666665543 44
Q ss_pred HHHHHHHHHHhh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 006071 197 VTYNTMINGYNR----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNAVT 268 (662)
Q Consensus 197 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (662)
..+..|...|.. .+++++|...|+.....| +...+..|...|.. .+++++|+..|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 556666666666655543 44555555555554 455666666666555543 4445
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 269 YTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 269 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
+..+...|.. .+++++|..+|++..+.+ +......+...|.. .+++++|...|+...+.+ +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 5555555554 555666666666555532 34445555555543 455555555555554432 23333
Q ss_pred HHHHHHHHc----CCcHHHHHHHHHHH
Q 006071 341 GILIENFCK----AEMYDRAIKLLDKL 363 (662)
Q Consensus 341 ~~l~~~~~~----~~~~~~a~~~~~~~ 363 (662)
..+...|.. .+++++|+..|+..
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 334444433 44444444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-18 Score=167.68 Aligned_cols=299 Identities=10% Similarity=0.026 Sum_probs=210.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006071 160 TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIK 239 (662)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 239 (662)
+...+..+...+...|++++|..+++++.+... .+...+..++.++...|++++|..+++++.... +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 444455555566666666666666666665532 244455555566666677777777776666542 335556666677
Q ss_pred HHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 006071 240 GYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 240 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (662)
.+...| ++++|...|+++.... +.+...+..+...+...|++++|...++++.+. .|.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 777777 6777777777766543 334566777777777777777777777777765 344566667777778888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhH
Q 006071 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (662)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (662)
+.|...++.+.+.. +.+...+..+...+...|++++|...++++++...........+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888877754 55667788888888888888888888888876542211111223345678888889999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH-HhcCCh
Q 006071 399 AEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY-LRKGEP 465 (662)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 465 (662)
|...++.+.+..+.+..++..+..++...|++++|...++.+.+.. +.+...+..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999999998888888899999999999999999999999888764 33677777777777 344544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-18 Score=168.24 Aligned_cols=291 Identities=14% Similarity=0.019 Sum_probs=225.5
Q ss_pred CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 006071 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (662)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (662)
+.+...+..+...+...|++++|+.+|+++++.. | .+...+..++.++...|++++|..+++++.+..+.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----P-----FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C-----CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 5566677777888888888888888888887653 2 234456667777888888999999998888888888
Q ss_pred HHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 006071 414 PVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVME 492 (662)
Q Consensus 414 ~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (662)
+.++..+...+...| ++++|...++.+.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 888888888888888 8899999998888764 3356778888888999999999999999888754 233556667888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----C---CCC----HHHHHHHH
Q 006071 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG----S---VPN----FDSLLSVL 561 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~p~----~~~~~~~~ 561 (662)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++.+.. . .|. +..++.++
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 888899999999999998887655 67788888999999999999999988887621 0 022 34567778
Q ss_pred hccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH-HhcCCcc
Q 006071 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL-NQEGNTK 638 (662)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 638 (662)
...|++++|...++++++..+. +...+..++.++.+.|++++|.+.+++.+... +.+...+..+..++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8889999999999998887543 45667789999999999999999999988764 34566677777777 5555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=169.49 Aligned_cols=289 Identities=13% Similarity=0.082 Sum_probs=226.5
Q ss_pred HHcCCcHHHHHH-HHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 347 FCKAEMYDRAIK-LLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 347 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+...|++++|+. .+++.+... +. ....+...+..+...+...|++++|...|+.+.+..+.+..++..++.++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~----~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE----EE-NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp -----------CHHHHCCCCCC----SS-CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcC----CC-CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344578888888 777654321 11 112245678889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHH---------------H
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRS---------------V 490 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l 490 (662)
..|++++|...++.+.+.. +.+..++..++.++...|++++|...++++.+.... +...+.. .
T Consensus 110 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 110 ENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 9999999999999998865 347889999999999999999999999999975422 2222211 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccC
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKG 565 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g 565 (662)
+..+...|++++|...++++.+..+.. +...+..++.++...|++++|+..++++... .|+ +..++.++...|
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcC
Confidence 334448899999999999999885543 5788899999999999999999999999873 344 345677888999
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------cHhhHHHHHHHHHhcC
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----------DWKSSDKLIAGLNQEG 635 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g 635 (662)
++++|+..++++++..+ .....+..++.++.+.|++++|.+.+++++...... ....|..+..+|...|
T Consensus 266 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 266 QSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 99999999999998753 456777889999999999999999999988753221 2677889999999999
Q ss_pred CcchhHHHHH
Q 006071 636 NTKQADILSR 645 (662)
Q Consensus 636 ~~~~a~~~~~ 645 (662)
++++|..+.+
T Consensus 345 ~~~~A~~~~~ 354 (368)
T 1fch_A 345 QSDAYGAADA 354 (368)
T ss_dssp CGGGHHHHHT
T ss_pred ChHhHHHhHH
Confidence 9999976654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=167.13 Aligned_cols=267 Identities=10% Similarity=-0.006 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
.+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555554432 2344444555555555555555555555554432 223444444455555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHhhcCChHHHHHHHHHHHHCCCC-CCHhhHHH
Q 006071 173 LSLKLETAIRFFEDMKSRGISLDVVTYNT---------------MINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYTT 236 (662)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 236 (662)
..|++++|...++.+...... +...+.. .+..+...|++++|...|+.+...... ++..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 555555555555555443211 1111110 122233667777777777777654211 13566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 006071 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (662)
+...+...|++++|+..|+++.... +.+..++..+..++...|++++|...++++... .|.+..++..+..++...|
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence 7777777777777777777776542 345667777777777777777777777777764 4556777777777777777
Q ss_pred ChHHHHHHHHHHHhCCCC----------CChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 006071 317 HLNAAADVLKAMIRLSIP----------TEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (662)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (662)
++++|...|+.+...... ....+|..+..+|...|++++|..++...++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 777777777776653211 1156777778888888888887777664443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-16 Score=159.77 Aligned_cols=385 Identities=11% Similarity=-0.014 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEK--------NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF-----D 261 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 261 (662)
....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456677777777777777777777665431 01123445666666677777777776666665421 0
Q ss_pred --CCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH---hcCChHHHHHHHHHHHhCCCC
Q 006071 262 --VKPNAVTYTALLPGLCD--AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC---KSGHLNAAADVLKAMIRLSIP 334 (662)
Q Consensus 262 --~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~ 334 (662)
......++.....++.. .+++++|+..|++.++. .|.++..+..+..++. ..++.+.|+..+++..+.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 01123344444433333 33566666666666653 4545555554444422 3344555555555555432 3
Q ss_pred CChhhHHHHHHHHHcC----CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 006071 335 TEAGHYGILIENFCKA----EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 335 ~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (662)
.+...+..+...+... +++++|...+++..... +.+...+..+...+...|++++|...++++.+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 3334444443333332 33444555555443322 1123334444455555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (662)
|.+..++..+..+|...+... .... ... ........+.++.|...+++..+.. +.+...+..+
T Consensus 278 p~~~~~~~~lg~~y~~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 555555544444432211000 0000 000 0000011123466777777766543 2334556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCH
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLD--LVAKILE-ALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKT 567 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~ 567 (662)
...+...|++++|+..|+++++..+.+... .+..+.. .+...|++++|++.+++.++ +.|+.... .+..
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~------~~~~ 412 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK------EKMK 412 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH------HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH------HHHH
Confidence 777788888888888888877765443221 1222222 23466778888888877776 45543211 1223
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
..+..++++++... +.++..|..++.+|...|++++|++.+++.++.+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34555666666654 33455666788888888888888888888776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=155.79 Aligned_cols=289 Identities=13% Similarity=0.134 Sum_probs=129.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
.++...|+.++|.++++.+. ++.+|+.++.++.+.|++.+|++.|.+. +|...|..++..+...|++
T Consensus 11 ~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 35557788999999998872 2359999999999999999999999653 4777899999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988877763 4567788899999999999999887774 367779999999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006071 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (662)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (662)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. ..+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 37889999999999999999999988 278999999999999999999966554422 3334
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCC------Chhh
Q 006071 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS--GHLNAAADVLKAMIRLSIPT------EAGH 339 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~ 339 (662)
....++..|.+.|.++++..+++..+.. .+....+|+.+.-.|++- ++..+.++.|.. +.++++ +...
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 4556888899999999999999988754 555777888887777754 334444444432 122333 4556
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDK 362 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~ 362 (662)
|.-++..|.+.++++.|....-+
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHh
Confidence 77777777788888877765443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=161.81 Aligned_cols=262 Identities=14% Similarity=0.093 Sum_probs=216.5
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+..+...+...|++++|...|+.+.+..|.+..++..++.++...|++++|...|+.+.+.. +.+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455688889999999999999999999999999999999999999999999999999999998864 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH-HhH----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPAS-SLF----------RSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKIL 526 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 526 (662)
|...|++++|...++++.+.. |+. ..+ ..+...+...|++++|...++++++..+. ++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998753 332 222 23467888999999999999999998654 2688899999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCH
Q 006071 527 EALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 602 (662)
.+|...|++++|++.++++++ ..|+ +..++.++...|++++|+..++++++..+ .+...+..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 999999999999999999987 3444 34577788899999999999999999853 3467788899999999999
Q ss_pred HHHHHHHHHHHHcCCC-----------CcHhhHHHHHHHHHhcCCcchhHHHHHH
Q 006071 603 LNAYSILFKIMEKGGV-----------TDWKSSDKLIAGLNQEGNTKQADILSRM 646 (662)
Q Consensus 603 ~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (662)
++|++.+++++..... .....|..|..++...|+.+.|..+.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998864321 1356778899999999999988655443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=162.45 Aligned_cols=235 Identities=12% Similarity=0.027 Sum_probs=131.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
+...+..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...|+++... .|.+..++..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 34457777777778888888888887777653 446677777777777888888888888877775 455677777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc
Q 006071 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAG----------HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME 379 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 379 (662)
.++...|++++|...++++.+.. +.+.. .+..+...+...|++++|+..++++++.. +. .++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~---~~~ 212 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN----GD---MID 212 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS----CS---SCC
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----cC---ccC
Confidence 77777788888887777776642 11111 12223445555555555555555554432 11 012
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
..++..+...+...|++++|...|+++.+..+.++.++..++.+|...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 33444444455555555555555555555444444455555555555555555555555444432 11344444444444
Q ss_pred HhcCChHHHHHHHHHHH
Q 006071 460 LRKGEPADAKTALDSMI 476 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~ 476 (662)
...|++++|...++++.
T Consensus 292 ~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 292 INLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHTCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44444444444444444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-15 Score=154.06 Aligned_cols=345 Identities=12% Similarity=0.017 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCC
Q 006071 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRL--------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (662)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (662)
...|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...++++.+........
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666655331 113345677888888888899999888888877654321111
Q ss_pred CCCCCccccHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH---HhcCChhHHHHHHHHHhhCCCCCC
Q 006071 374 STLDMEASSYNPMIQHLCH--NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH---SKEGNPDSAFEIVKIMGRRGVPRD 448 (662)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 448 (662)
.......++.....++.. .+++++|...|+++.+..|.++..+..+..++ ...++.++|++.++...+.+ +.+
T Consensus 131 -~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 -YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp -SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred -cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 111122345555545544 45789999999999999998998888777664 45678889999999888764 336
Q ss_pred HHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006071 449 ADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (662)
Q Consensus 449 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (662)
...+..+...+.. .|++++|...+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 6667666655554 467789999999988754 345677888899999999999999999999988766 6677777
Q ss_pred HHHHHHhC-------------------CCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Q 006071 525 ILEALLMR-------------------GHVEEALGRIDLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 525 l~~~~~~~-------------------g~~~~A~~~~~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (662)
+..+|... +.+++|+..+++..+. +..+. ...++..+...|++++|+.+|+++++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 77666432 2357788888887762 22222 556888889999999999999999987655
Q ss_pred CCh--hhHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-----------------------CCCcHhhHHHHHHHHHhcCCc
Q 006071 584 IDL--ASYEKVLDA-LLAAGKTLNAYSILFKIMEKG-----------------------GVTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 584 ~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~ 637 (662)
+.. ..+..++.. +...|++++|++.+++.+... .+.+..++..|+.+|...|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 432 233344443 457899999999999877543 234566788899999999999
Q ss_pred chhHHHHHHhhhh
Q 006071 638 KQADILSRMIRGE 650 (662)
Q Consensus 638 ~~a~~~~~~~~~~ 650 (662)
++|....++....
T Consensus 447 ~~A~~~y~kALe~ 459 (472)
T 4g1t_A 447 QQADEDSERGLES 459 (472)
T ss_dssp C------------
T ss_pred HHHHHHHHHHHhc
Confidence 9996665554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-17 Score=155.17 Aligned_cols=288 Identities=14% Similarity=0.153 Sum_probs=132.2
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHH
Q 006071 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146 (662)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 146 (662)
-+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 36788999999999983 3359999999999999999999999753 67779999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 006071 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN 226 (662)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 226 (662)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 987777663 4567788999999999999999998884 367789999999999999999999999976
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHH
Q 006071 227 IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM 306 (662)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 306 (662)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. . .+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~-~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V-HADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T-CHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h-CHhhHH
Confidence 47999999999999999999999988 278999999999999999999966555422 1 444456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC--CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH
Q 006071 307 KLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA--EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (662)
Q Consensus 307 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (662)
.++..|.+.|.+++|..+++...... +.....|.-+..+|++- ++..+.++.|..-+....+.+. .-+...|.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~----~~~~~~w~ 286 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA----AEQAHLWA 286 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH----HHTTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHH
Confidence 78899999999999999999998765 56677788887777764 3455555555432111100000 01345677
Q ss_pred HHHHHHHhcCChhHHHH
Q 006071 385 PMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~ 401 (662)
.+...|...++++.|..
T Consensus 287 e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhchHHHHHH
Confidence 77777777777777654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=154.14 Aligned_cols=261 Identities=10% Similarity=0.024 Sum_probs=218.2
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+......+...|++++|..+|+++.+..+.+..++..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 455677888899999999999999999999999999999999999999999999999999998864 3478899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPA-SSLFRSV--------------ME-SLFEDGRVQTASRVMKSMVEKGVKENLDLV 522 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 522 (662)
+...|++++|...++++.+.. |+ ...+..+ .. .+...|++++|...++++.+..+. +...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999999753 33 2233222 22 377889999999999999988665 78889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 006071 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (662)
..++.++...|++++|++.++++.+. .|+ +..++..+...|++++|...++++++..+ .+...+..++.++..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 99999999999999999999999873 343 34567788899999999999999998763 356677789999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----------cHhhHHHHHHHHHhcCCcchhHHHHHH
Q 006071 599 AGKTLNAYSILFKIMEKGGVT-----------DWKSSDKLIAGLNQEGNTKQADILSRM 646 (662)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (662)
.|++++|.+.++++....... ....+..+..++...|++++|..+.+.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999988764432 466788899999999999999665443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=152.45 Aligned_cols=278 Identities=12% Similarity=0.020 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 006071 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV 311 (662)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (662)
..+..+...+...|++++|..+|+++.... +.+..++..+..++...|++++|...++++.+. .|.+..++..++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHH
Confidence 344555566666666666666666665542 334555555666666666666666666666554 34455555555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHH-HH-H
Q 006071 312 QCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM-IQ-H 389 (662)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-~ 389 (662)
+...|+++.|...++.+.... +.+...+..+.... |+......+ .. .
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------------------VDIDDLNVQSEDFF 147 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------------------CC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------------------HHHHHHHHHHHhHH
Confidence 666666666666665555432 11111111110000 000011111 11 2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
+...|++++|...++.+.+..+.+..++..++..+...|++++|...++.+.+.. +.+..++..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5667888999999999988888888889999999999999999999998888754 336788888888888999999999
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhCCCHHHH
Q 006071 470 TALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-----------NLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A 538 (662)
..++++.+.. +.+...+..+...+...|++++|...++++.+..+.. +...+..+..++...|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9998888653 2346677788888888889999988888887764442 456777788888888888888
Q ss_pred HHHHHHH
Q 006071 539 LGRIDLM 545 (662)
Q Consensus 539 ~~~~~~~ 545 (662)
..++++.
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 8776643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-16 Score=146.09 Aligned_cols=249 Identities=12% Similarity=0.134 Sum_probs=156.5
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006071 207 NRFKKMDEAEKLFAEMKEKNIEPTV--ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE 284 (662)
Q Consensus 207 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 284 (662)
...|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 4456666666666554432 2222 23445566666777776666544331 24555566666666667777777
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 006071 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (662)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (662)
|++.++++...+..|.+...+..+...+...|++++|...++. +.+...+..++..|.+.|++++|...++.++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777766555565666666666777777777777776665 4556666667777777777777777777775
Q ss_pred HhhhhccCCCCCCCccccH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 365 EKEIILRPQSTLDMEASSY---NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
+.. |+.... ...+..+...|++++|..+|+++.+..|.++.+++.+..++...|++++|...++++.
T Consensus 158 ~~~----------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 158 DQD----------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHC----------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhC----------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 222111 1122233344677777777777777777777777777777777777777777777776
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 006071 442 RRGVPRDADAYICLIESYLRKGEPAD-AKTALDSMIED 478 (662)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 478 (662)
+.. +.++.++..++..+...|+.++ +..+++++.+.
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 653 2366677777777777777754 45677776653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=147.65 Aligned_cols=274 Identities=13% Similarity=0.066 Sum_probs=162.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH
Q 006071 276 LCDAGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYD 354 (662)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 354 (662)
....|++..|+..++..... .|.+ ......+.++|...|+++.|...++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665544321 2312 12334455666666666666654433 12445555666666666666666
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCC-ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 006071 355 RAIKLLDKLVEKEIILRPQSTLDM-EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (662)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 433 (662)
+|++.+++++... ..| +...+..+...+...|++++|+..+++ +.++.++..++..+.+.|++++|
T Consensus 83 ~A~~~l~~ll~~~--------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 83 AIVAELDREMSRS--------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHSC--------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcc--------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 6666666664321 112 233344455566666777777666665 45666777777777777777777
Q ss_pred HHHHHHHhhCCCCCCHH-h--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 434 FEIVKIMGRRGVPRDAD-A--YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 434 ~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
...++.+.+.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776643 3321 1 112233344456777777777777764 3345666677777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHH
Q 006071 511 VEKGVKENLDLVAKILEALLMRGHVEE-ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLL 574 (662)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~ 574 (662)
++..+. +..++..++.++...|+.++ +.++++++.+ ..|+...+.+...+.+.++++..-|
T Consensus 227 l~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 227 LDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHHHHHc
Confidence 776555 66667777777777777654 4567777766 5666555666555555555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-15 Score=149.83 Aligned_cols=378 Identities=10% Similarity=0.074 Sum_probs=216.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA---DDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (662)
+...+.+.|++++|.+.|+...+.| +...+..|...|...|+. ++|..+|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566777777777777776654 344445555556666666 7777777777643 44445555554444
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 006071 279 AG-----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN---AAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (662)
Q Consensus 279 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (662)
.+ ++++|..+|++..+.+ +...+..+...|...+..+ .+...+......+ ++.....+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 43 6677888887777754 3335666666666554332 3444444444433 344556666667666
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG---QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (662)
+.++.+......+.+.. .. .++..+..+...|...| +.++|...|++..+.++++...+..+..+|...
T Consensus 155 ~~~~~~~~~a~~~~~~a----~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAA----LN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA 226 (452)
T ss_dssp TCGGGGHHHHHHHHHHH----TT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG
T ss_pred CCcccCHHHHHHHHHHH----Hc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 64443333322222111 11 22336777777777788 888888888888888888887777777777654
Q ss_pred ----CChhHHHHHHHHHhhCCCCCCHHhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC--
Q 006071 428 ----GNPDSAFEIVKIMGRRGVPRDADAYICLIES-Y--LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG-- 498 (662)
Q Consensus 428 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 498 (662)
+++++|..+|+... .| ++..+..+... + ...+++++|...|++..+.| +......+...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 68888888888877 32 55566666665 3 45778888888888888765 4455555555555 45
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCH
Q 006071 499 ---RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKT 567 (662)
Q Consensus 499 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~ 567 (662)
++++|..+|++.. .-+...+..+...|.. ..++++|+..+++..+.|.......+...|.. ..+.
T Consensus 299 ~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp SCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCH
Confidence 8888888888876 2255666667776665 33788888888887776654445556655542 4578
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++|..+++++.+.+........ ..+......++..+|..+.++...
T Consensus 375 ~~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888888777632211111 111111223455566666665444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-12 Score=132.64 Aligned_cols=451 Identities=12% Similarity=0.104 Sum_probs=289.6
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC---hHHHHH
Q 006071 141 RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK---MDEAEK 217 (662)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~ 217 (662)
...+.+..|+..+..+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555566665554 358888888888888888888888888888876 55577888888888888888 888888
Q ss_pred HHHHHHHCC-CCCCHhhHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHHh-------
Q 006071 218 LFAEMKEKN-IEPTVISYTTMIKGYVAVERA--------DDALRIFDEMKS-FDV-KP-NAVTYTALLPGLCD------- 278 (662)
Q Consensus 218 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~------- 278 (662)
+|++..... .+|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888887652 137777887777665555442 334466666543 454 34 34566666654432
Q ss_pred --CCCHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 006071 279 --AGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDR 355 (662)
Q Consensus 279 --~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (662)
.++++.+..+|++++.. +..+ ..+|......-...+. ..+.. ++.- ...+++.
T Consensus 205 eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~-------------------~~~e--~~~~y~~ 260 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARR-------------------HIGE--LSAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHH-------------------HHHH--HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHH-------------------HHHH--hhHHHHH
Confidence 23456677777777642 2111 1222221111110000 00111 1111 1123444
Q ss_pred HHHHHHHHHHhhhhcc---CC-------CCCCC-c------cccHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCC
Q 006071 356 AIKLLDKLVEKEIILR---PQ-------STLDM-E------ASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 356 a~~~~~~~~~~~~~~~---~~-------~~~~~-~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~ 411 (662)
|...+..+........ +. ..+++ + ...|...+.--...+ ..+.+..+|++++...+
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p 340 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC 340 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC
Confidence 5555544332211100 00 00010 0 123444444333322 12345678999999889
Q ss_pred CCHHHHHHHHHHHHhcCChhHHH-HHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------C
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAF-EIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH---------S 481 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~ 481 (662)
.++..|...+..+...|+.++|. .+|+..... .+.+...|..++....+.|+++.|..+|+++++... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999997 999999874 345777788889999999999999999999986310 1
Q ss_pred C------------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHh-
Q 006071 482 P------------ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQ- 547 (662)
Q Consensus 482 ~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~- 547 (662)
| ...+|...+....+.|..+.|..+|..+++..+......|...+..-.+.| +++.|.++|+..++
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 123677778878888999999999999988622223445544444444554 58999999998887
Q ss_pred CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 548 SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 548 ~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
.+..|.+ ..++..+...|+.+.|+.+|++++...+++ ....|...+..-.+.|..+.+.++.+++.+.-+.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3333332 345555667899999999999999986532 2456666667677899999999999999987543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=145.57 Aligned_cols=308 Identities=11% Similarity=0.043 Sum_probs=169.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh---HHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKL---NHARCILLDMPKKGVQWDEDMFEVLIES 100 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (662)
..+...+.+.|++++|++.|+.+.+.+ ++.++..+..++...|+. ++|..+|++..+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 456777888899999999999988765 445566677777777877 8899999888764 55566666665
Q ss_pred HHhcC-----ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 101 YGKKG-----IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMM---AKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 101 ~~~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
+...| ++++|...|++..+.|. +..+..|...|...+..++ +.+.+......| +......+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 55554 67889999988888653 2366677777776554333 444444444333 2334445555565
Q ss_pred hcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-
Q 006071 173 LSLKLETA----IRFFEDMKSRGISLDVVTYNTMINGYNRFK---KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAV- 244 (662)
Q Consensus 173 ~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 244 (662)
..+.++.+ ..++...... +...+..|..+|...| +.++|...|+.....| +++...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 55544333 3333333322 2236666666777777 7777777777777665 33444445566665444
Q ss_pred ---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC--
Q 006071 245 ---ERADDALRIFDEMKSFDVKPNAVTYTALLPG-L--CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG-- 316 (662)
Q Consensus 245 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 316 (662)
+++++|+.+|+... . -+...+..+... + ...+++++|..+|++..+.| +......+..+|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCC
Confidence 57777777777766 2 234444455444 3 34667777777777766643 5556666666665 44
Q ss_pred ---ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCcHHHHHHHHHHH
Q 006071 317 ---HLNAAADVLKAMIRLSIPTEAGHYGILIENFCK----AEMYDRAIKLLDKL 363 (662)
Q Consensus 317 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 363 (662)
++++|...|+... +.++.....+...|.. ..++++|...|+..
T Consensus 299 ~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp SCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 6666666666655 2344455555555544 22556666666555
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-15 Score=131.52 Aligned_cols=189 Identities=22% Similarity=0.215 Sum_probs=81.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+...+...|++++|...|+++.+..|.++.++..+..++...|++++|...++...+.+ +.+...+..+..++..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444432 1133444444444444
Q ss_pred c-----------CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 462 K-----------GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 462 ~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
. |++++|+..+++.++.. +-+...+..+...+...|++++|+..|+++++.+ .+...+..+..+|.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 4 55555555555554432 1123344444445555555555555555555544 34444555555555
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHH
Q 006071 531 MRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~ 576 (662)
..|++++|+..+++.++ ..|+ ...++.++...|++++|+..+++
T Consensus 163 ~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555544 2222 12233444455555555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=163.22 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=90.8
Q ss_pred CHHhHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLS---EGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
...+|+++|.+|++.|+.++|.++|.+|.+ .|+.||..|||++|.+|++.|++++|.++|++|...|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 36778888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 202 MINGYNRFKKM-DEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 202 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
+|.++++.|+. ++|.++|++|...|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 88888887764 6777888888888888888888877755433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-14 Score=131.60 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=144.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cC----HHhH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVE--RS----VKSY 129 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~ 129 (662)
...+..+...+...|++++|..+|+++.+.. .+..++..+...+...|++++|...|+.+.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566677777777777777777777777665 46677777777777777777777777776654211 11 4666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 006071 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209 (662)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 209 (662)
..+...+...|++++|...|++..... |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 777777777777777777777776642 332 23444566677777777766652 12445566666666667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289 (662)
Q Consensus 210 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 289 (662)
|++++|...|+...... +.+..++..+...+...|++++|...|+.+.... +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777776666542 3345566666666666666666666666665542 334556666666666666666666666
Q ss_pred HHHHHc
Q 006071 290 REMVER 295 (662)
Q Consensus 290 ~~~~~~ 295 (662)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=161.85 Aligned_cols=150 Identities=12% Similarity=0.109 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQ---LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (662)
..+|+++|.+|++.|++++|..+|+.|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC------HhhHHHHHHH
Q 006071 168 LWGFFLSLK-LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT------VISYTTMIKG 240 (662)
Q Consensus 168 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 240 (662)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. .+++.++++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999998755443 333333333 2233433 4455556666
Q ss_pred HHhcC
Q 006071 241 YVAVE 245 (662)
Q Consensus 241 ~~~~~ 245 (662)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-14 Score=128.26 Aligned_cols=198 Identities=14% Similarity=0.045 Sum_probs=93.0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
|+++..+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|...|++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345555555555555556666666655555554332 45555555555555566666666555555543 2344455555
Q ss_pred HHHHHHc-----------CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 133 FKLILRR-----------GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 133 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
..++... |++++|+..|++.++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 5555555 555555555555544321 133444444444555555555555555554443 34444555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (662)
+..++...|++++|...|+...+.. +.+...+..+...+...|++++|+..|++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555544431 22334444444555555555555544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-14 Score=136.38 Aligned_cols=246 Identities=9% Similarity=0.005 Sum_probs=202.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
..|..+...+...|++++|+..+++++...|.+..+|+.+..++...|+ +++|+..|+++...+.. +...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4567777888899999999999999999999999999999999999997 99999999999987544 789999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCCHHHH
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM-RGHVEEA 538 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 538 (662)
...|++++|+..++++++.. +-+...|..+..++...|++++|+..++++++.++. +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999754 335788999999999999999999999999999877 78889999999999 6665777
Q ss_pred -----HHHHHHHHhCCCCCC----HHHHHHHHhccC--CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC-------
Q 006071 539 -----LGRIDLMMQSGSVPN----FDSLLSVLSEKG--KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG------- 600 (662)
Q Consensus 539 -----~~~~~~~~~~~~~p~----~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 600 (662)
++.+++.+. ..|+ +..+..++...| ++++|++.++++ +.. +.+...+..++++|.+.|
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 588888887 5566 334566777777 689999999877 433 445677788999999874
Q ss_pred --CHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 601 --KTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 601 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
..++|+++++++....++.....|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999998333344344555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-14 Score=131.37 Aligned_cols=246 Identities=12% Similarity=0.055 Sum_probs=186.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHhHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIES 458 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 458 (662)
..+......+...|++++|...|+.+.+..|.++.++..+..++...|++++|...++.+.+....+ ....|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3456677788899999999999999999888888889999999999999999999999988842111 23448889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++++..+. +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 234577888888999999999999999998877544 677777777344455699999
Q ss_pred HHHHHHHHhCCCCCCH----HHHHHHHhccCC---HHHHHHHHHHHhcCC---CCCC----hhhHHHHHHHHHhcCCHHH
Q 006071 539 LGRIDLMMQSGSVPNF----DSLLSVLSEKGK---TIAAVKLLDFCLGRD---CIID----LASYEKVLDALLAAGKTLN 604 (662)
Q Consensus 539 ~~~~~~~~~~~~~p~~----~~~~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~ 604 (662)
++.++++.+ ..|+. ..++.++...|+ +++|...++++++.. +.++ ...|..++..+...|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999887 44442 234555556666 888999998888753 2211 2567778999999999999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 006071 605 AYSILFKIMEKGGVTDWKSSDKLIAGL 631 (662)
Q Consensus 605 A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (662)
|.+.+++++...+ .+......+....
T Consensus 240 A~~~~~~al~~~p-~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDP-TNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHC---
T ss_pred HHHHHHHHHhcCc-cHHHHHHHhhhhh
Confidence 9999999988753 3444444444333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-13 Score=127.48 Aligned_cols=224 Identities=9% Similarity=-0.048 Sum_probs=166.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHhHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICL 455 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (662)
...+..+...+...|++++|...|++..+ +.++.++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34566677777788888888888888877 4456677778888888 888888888888887764 67777788
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 456 IESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 456 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
...|.. .+++++|...+++..+.+ +...+..+...|.. .|++++|...+++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 888888 888888888888887754 55666777777777 788888888888887765 4556666777
Q ss_pred HHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh-
Q 006071 528 ALLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA- 598 (662)
Q Consensus 528 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 598 (662)
.|.. .+++++|+..+++..+.+.......+...+.. .+++++|+.+++++++.++ ...+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcC
Confidence 7777 77888888888887775432223456666666 7888888888888877643 4555667788887
Q ss_pred ---cCCHHHHHHHHHHHHHcCC
Q 006071 599 ---AGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 599 ---~g~~~~A~~~~~~~~~~~~ 617 (662)
.|++++|++.+++..+.+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888777653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.6e-12 Score=128.15 Aligned_cols=452 Identities=9% Similarity=0.062 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI---VQESVK 112 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 112 (662)
..+-+..|+..+..+ |.+...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 445666777777777 789999999999999999999999999999886 44578889999998888888 999999
Q ss_pred HHHHHHHcC-CCcCHHhHHHHHHHHHHcCCh--------hHHHHHHHHHHh-CCC-Cc-CHHHHHHHHHHHHh-------
Q 006071 113 IFDIMKQLG-VERSVKSYDALFKLILRRGRY--------MMAKRYFNKMLS-EGI-EP-TRHTYNVMLWGFFL------- 173 (662)
Q Consensus 113 ~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~------- 173 (662)
+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998753 138888998888777665553 334477777654 355 44 34677777765432
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 006071 174 --SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDAL 251 (662)
Q Consensus 174 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (662)
.++++.+..+|+.++......-..+|......-...+. ..+.+++.+.. .+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHHHH
Confidence 34567888999888864222112344332221111111 01111111110 0111122
Q ss_pred HHHHHHhh--CCC----C-----------C-----C---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCC
Q 006071 252 RIFDEMKS--FDV----K-----------P-----N---AVTYTALLPGLCDAG-------KMVEVQKVLREMVERYIPP 299 (662)
Q Consensus 252 ~~~~~~~~--~~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~ 299 (662)
..+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++++.. .|
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p 340 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VC 340 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cC
Confidence 22221100 000 0 0 0 122333333222211 123455666666664 44
Q ss_pred CcHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhh-------hcc
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAA-DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI-------ILR 371 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~ 371 (662)
....+|...+..+...|+.+.|. .+|+..... +|.+...|...+...-+.|+++.|..+|+.+++... ...
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 46677777777777777776775 777776653 345555566666666677777777777777665310 000
Q ss_pred CC-----CCCC-CccccHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhhC
Q 006071 372 PQ-----STLD-MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK-GVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGRR 443 (662)
Q Consensus 372 ~~-----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 443 (662)
|. .... .....|...+....+.|..+.|..+|.++.+. .......|...+..-.+. ++.+.|..+|+...+.
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 10 0000 01235667777777777788888888888776 433344454444443343 3478888888877765
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK 516 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 516 (662)
.+.+...|...+......|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..+.+++.+.-+.
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34466667777777777788888888888877643211 3456666666667778888888888888777554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-14 Score=128.72 Aligned_cols=222 Identities=11% Similarity=0.028 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----hhhHHH
Q 006071 269 YTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--PTE----AGHYGI 342 (662)
Q Consensus 269 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 342 (662)
+..+...+...|++++|...++++.+.. .+..++..+..++...|+++.|...++.+.+... .++ ..++..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3344444444444444444444444433 1344444444444444444444444444433210 001 234444
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
+...|...|++++|+..|+++++.. |+ ...+...|++++|...++.+....+.+..++..+..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~----------~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH----------RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----------CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC----------ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 5555555555555555555554321 11 122333344444555554444444444444444445
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (662)
.+...|++++|...++.+.+.. +.+..+|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 5555555555555555444432 1134444444444444444444444444444322 1123334444444444444444
Q ss_pred HHHHHHHHHH
Q 006071 503 ASRVMKSMVE 512 (662)
Q Consensus 503 a~~~~~~~~~ 512 (662)
|...++++.+
T Consensus 226 A~~~~~~a~~ 235 (258)
T 3uq3_A 226 ALETLDAART 235 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-13 Score=132.32 Aligned_cols=225 Identities=9% Similarity=0.054 Sum_probs=147.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK-LNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
.+..++...|++++|+..|+.+++.+ |.+..+|..+..++...|+ +++|+..|++++...+. +..+|..+..++..
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 34446666777777777777777766 6677777777777777775 77777777777766544 66777777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHH--
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL-SLKLETA-- 180 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a-- 180 (662)
.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++++..+ .+...|+.+..++.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHH
Confidence 777777777777777654 35666777777777777777777777777776532 256666666666666 4444555
Q ss_pred ---HHHHHHHHhCCCCCCHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---------C
Q 006071 181 ---IRFFEDMKSRGISLDVVTYNTMINGYNRFK--KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE---------R 246 (662)
Q Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~ 246 (662)
+..+++....... +...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+...|.+.| .
T Consensus 257 ~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 257 EREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 3666666655322 5566666666666666 466666666665 22 2334556666666666543 2
Q ss_pred HHHHHHHHHHH
Q 006071 247 ADDALRIFDEM 257 (662)
Q Consensus 247 ~~~a~~~~~~~ 257 (662)
.++|+.+|+++
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36666666666
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=128.14 Aligned_cols=163 Identities=11% Similarity=0.036 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
|..+..++...|++++|...|+++.+..+.+..++..+..+|...|++++|...++...+.. +.+...|..+...+...
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444455555555555555555555555444432 22344444444122222
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhC
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKG-VKEN------LDLVAKILEALLMR 532 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 532 (662)
+++++|...++++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 35555555555554422 1123333344444444444 444555555444331 1111 13344455555555
Q ss_pred CCHHHHHHHHHHHHh
Q 006071 533 GHVEEALGRIDLMMQ 547 (662)
Q Consensus 533 g~~~~A~~~~~~~~~ 547 (662)
|++++|++.++++.+
T Consensus 235 ~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 235 RDKVKADAAWKNILA 249 (272)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555555554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-13 Score=123.87 Aligned_cols=228 Identities=12% Similarity=-0.059 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHh
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSL 486 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 486 (662)
+.++.++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|...+++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 456788889999999999999999999999884 366788889999999 999999999999999865 6677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006071 487 FRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLL 558 (662)
Q Consensus 487 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 558 (662)
+..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .|++++|++.+++..+.+.......+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888888988 999999999999999875 67788889999999 999999999999999865222244566
Q ss_pred HHHhc----cCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 006071 559 SVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAG 630 (662)
Q Consensus 559 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (662)
..+.. .+++++|+.+++++++.+ ++..+..++.+|.. .|++++|++.+++..+.+. ...+..+..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 67766 899999999999999874 35667789999999 9999999999999998853 5566778999
Q ss_pred HHh----cCCcchhHHHHHHhhhhccc
Q 006071 631 LNQ----EGNTKQADILSRMIRGEMSR 653 (662)
Q Consensus 631 ~~~----~g~~~~a~~~~~~~~~~~~~ 653 (662)
|.. .+++++|....++....++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 998 99999997776666655543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=129.25 Aligned_cols=244 Identities=10% Similarity=-0.082 Sum_probs=193.7
Q ss_pred hcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHH
Q 006071 392 HNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPAD 467 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (662)
..|++++|...++.+.+.. +.++.++..++.++...|++++|...|+.+.+.. +.+...|..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4578999999999999874 3456788999999999999999999999998864 3378999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +.. .......+...|++++|+..+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPF-RSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH-HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-ChH-HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999753 335678888999999999999999999999987654 332 23344445677999999999987776
Q ss_pred -CCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhh
Q 006071 548 -SGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID---LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKS 623 (662)
Q Consensus 548 -~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 623 (662)
.+..+....++..+...++.++|...+++++...+... ...+..++.++.+.|++++|.+.+++.+...+ .++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 251 (275)
T 1xnf_A 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-HNFVE 251 (275)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTCHH
T ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-hhHHH
Confidence 33333344566677788889999999999988754321 46777899999999999999999999998753 24433
Q ss_pred HHHHHHHHHhcCCcchhHHH
Q 006071 624 SDKLIAGLNQEGNTKQADIL 643 (662)
Q Consensus 624 ~~~l~~~~~~~g~~~~a~~~ 643 (662)
...++...|++++|...
T Consensus 252 ---~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDD 268 (275)
T ss_dssp ---HHHHHHHHHHHHHC---
T ss_pred ---HHHHHHHHHHHHhhHHH
Confidence 46677888888888533
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-14 Score=131.68 Aligned_cols=219 Identities=17% Similarity=0.023 Sum_probs=96.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+..++...|++++|...|+++....+.++.++..++.++...|++++|...++.+.+.. +.+...+..+..++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHH
Confidence 334444444444444444444444444444444455555555555555555555555544432 1134444555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
.|++++|...++++.+.. |+.......+..+...|++++|...++......+. +...+. ++..+...++.++|++.
T Consensus 124 ~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHH
Confidence 555555555555554422 22222222233334445555555555544443222 122222 33444444455555555
Q ss_pred HHHHHhCCCC--CC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 542 IDLMMQSGSV--PN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 542 ~~~~~~~~~~--p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+++....... |+ +..++..+...|++++|...+++++...+.. +...+.++...|++++|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHHhhHHHH
Confidence 5544431110 00 1223444455556666666666555543211 112244555556666655554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-12 Score=117.38 Aligned_cols=198 Identities=11% Similarity=-0.013 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444444445555555555555444432 2234444444555555555555555555544432 123344444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 006071 173 LSLKLETAIRFFEDMKSRGISL-DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDAL 251 (662)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (662)
..|++++|..+++++...+..| +...+..+..++...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544411122 23344444455555555555555555544432 223444445555555555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 252 RIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
..++.+.... +.+...+..+...+...|++++|...++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555544432 23344444444445555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=119.93 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=169.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
+..+..++..+...|++++|...|+++.+..+. +..++..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 567888888999999999999999998876543 67888899999999999999999999988765 3577888889999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 214 (662)
+...|++++|...|+++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999997732233 456777888888899999999999999887643 368888899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 215 AEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
|...++.+.... +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999988753 456778888889999999999999999998875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=136.21 Aligned_cols=302 Identities=15% Similarity=0.046 Sum_probs=161.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCC
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE----AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL 376 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (662)
....+......+...|++++|...|+++.+.. +.+ ..++..+...|...|++++|...++++++.... .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~ 82 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----IGD 82 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----ccc
Confidence 34445556666666666666666666666542 222 234555556666666666666666665443211 000
Q ss_pred CCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHh
Q 006071 377 DMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDADA 451 (662)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 451 (662)
. +....++..+...+...|++++|...++.+.+. +. .....+
T Consensus 83 ~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 83 Q---------------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp H---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred c---------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 0 111233444444555555555555555444321 00 001234
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCc-HHhHHHHHHHHHhcCCHHHHHHH
Q 006071 452 YICLIESYLRKGE--------------------PADAKTALDSMIED----GHSPA-SSLFRSVMESLFEDGRVQTASRV 506 (662)
Q Consensus 452 ~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 506 (662)
+..+...|...|+ +++|...+++..+. +..|. ..++..+...+...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5555555555555 55555555554421 11111 23455555566666777777777
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHhccCCHHHHHHH
Q 006071 507 MKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN-------FDSLLSVLSEKGKTIAAVKL 573 (662)
Q Consensus 507 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~~~~~~g~~~~A~~~ 573 (662)
++++.+.... ++ ...+..++.++...|++++|+..+++.... +..++ ...++..+...|++++|..+
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 6666544111 11 224556666777777777777777666541 11111 12345556667777777777
Q ss_pred HHHHhcCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C-CcHhhHHHHHHHHHhcCCcchh
Q 006071 574 LDFCLGRDCIID-----LASYEKVLDALLAAGKTLNAYSILFKIMEKGG----V-TDWKSSDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 574 ~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~a 640 (662)
++++++...... ...+..++.+|...|++++|.+.+++.+.... . .....+..+...+...|+...+
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 777665422111 44566788888888888888888888664311 1 1234555677778887776443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-12 Score=115.50 Aligned_cols=200 Identities=15% Similarity=0.095 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006071 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (662)
Q Consensus 267 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (662)
..+..+...+...|++++|...++++.+. .|.+...+..++..+...|+++.|...++.+.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34444444555555555555555555443 23344455555555555555555555555554432 3344445555555
Q ss_pred HHcC-CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 347 FCKA-EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 347 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+... |++++|...++.+++. + ..+.+...+..+..++...|++++|...++.+.+..+.++.++..+..++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-----P--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-----T--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----c--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5555 5555555555555320 0 001112334444455555555555555555555555555555555555555
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
..|++++|...++.+.+.....+...+..+...+...|+.+++..+++.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555555555555543221244445555555555555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-12 Score=115.10 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006071 167 MLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 167 ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
+...+...|++++|...++.+.
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~ 35 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDAL 35 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333344444444433333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=123.22 Aligned_cols=190 Identities=12% Similarity=0.081 Sum_probs=82.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+...|++++|+..|+.+.+.. |.+..++..++.++...|++++|...++++.+.... +..++..+...+...|+++
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ----------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHH
Confidence 4444455555555555554443 444455555555555555555555555554443221 3444444445555555555
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
+|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 109 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 109 EAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544432 2334444444444445555555555554444331 1233344444444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+... .+..++..+..++...|++++|...++.+.+
T Consensus 187 ~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 187 EQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 3321 1334444444444444444444444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=137.78 Aligned_cols=271 Identities=11% Similarity=0.041 Sum_probs=207.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----C-CCCCHHhH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADAY 452 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 452 (662)
.+..+...+...|++++|...|+.+.+..+.++ .++..+...|...|++++|...++++.+. + .+.....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344566678899999999999999999887766 47888999999999999999999887652 1 12234678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 006071 453 ICLIESYLRKGEPADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGR-----------------VQTASRVMKSM 510 (662)
Q Consensus 453 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 510 (662)
..+...|...|++++|...++++.+. +-.+ ...++..+...+...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999988753 1112 24467778888999999 99999999987
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHhccCCHHHHHHHHHHH
Q 006071 511 VEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLLDFC 577 (662)
Q Consensus 511 ~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~ 577 (662)
.+. +..+ ....+..+..++...|++++|++.+++..+.. ..++ ...++..+...|++++|..+++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 654 1111 23467788999999999999999999887621 1122 234667788899999999999988
Q ss_pred hcCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CcHhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 578 LGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-----TDWKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 578 ~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
++..... ....+..++.++...|++++|.+.+++.+..... .....+..+..+|...|++++|....+..
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8754322 1456778999999999999999999998764211 12346677999999999999996666555
Q ss_pred hhhcc
Q 006071 648 RGEMS 652 (662)
Q Consensus 648 ~~~~~ 652 (662)
....+
T Consensus 370 l~~~~ 374 (411)
T 4a1s_A 370 LQLAX 374 (411)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 54433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-13 Score=121.43 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 006071 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (662)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (662)
|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.+. .|.+...+..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHH
Confidence 3344444444444444444444444321 223344444444444444444444444444443 2333444444444444
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (662)
..|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444444444444332 223333333444444444444444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=133.24 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=202.2
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc--cccHHHHHHHHHhcCChhHHHHHHHHHHhcC------
Q 006071 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME--ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG------ 410 (662)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 410 (662)
.+..+...+...|++++|+..|+++++.. +. .+. ...+..+...+...|++++|...++++....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG----TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc----cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 34456667788899999999998887653 11 011 1357778888889999999999999887652
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----C-CCCCHHhHHHHHHHHHhcCC-----------------hHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADAYICLIESYLRKGE-----------------PADA 468 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a 468 (662)
+....++..+...|...|++++|...++.+.+. + .+....++..+...|...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 344567888999999999999999999887653 1 11234578888899999999 9999
Q ss_pred HHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhCCCHHHH
Q 006071 469 KTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 469 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A 538 (662)
...+++..+. +..+ ....+..+...+...|++++|...+++..+.... ++ ...+..+..+|...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 9988887642 1111 2346777788899999999999999998765211 12 23677889999999999999
Q ss_pred HHHHHHHHhCCC-CCC-------HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC-----ChhhHHHHHHHHHhcCCHHHH
Q 006071 539 LGRIDLMMQSGS-VPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNA 605 (662)
Q Consensus 539 ~~~~~~~~~~~~-~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A 605 (662)
++.+++...... ..+ ...++.++...|++++|..+++++++..... ....+..++.+|.+.|++++|
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 999998876211 111 2346667778999999999999888753221 144677899999999999999
Q ss_pred HHHHHHHHHcCC
Q 006071 606 YSILFKIMEKGG 617 (662)
Q Consensus 606 ~~~~~~~~~~~~ 617 (662)
.+.+++......
T Consensus 363 ~~~~~~al~~~~ 374 (411)
T 4a1s_A 363 LKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=133.42 Aligned_cols=282 Identities=12% Similarity=0.001 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT----VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (662)
....+......+...|++++|...|++....+ +.+ ...+..+...+...|++++|...+++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 34444455555555566666666665555432 112 1344455555555555555555555543210
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCChhhHHHHHH
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI-----PTEAGHYGILIE 345 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~ 345 (662)
...+..|....++..+...+...|+++.|...+++...... .....++..+..
T Consensus 78 ----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ----------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 00011111223344444444444555555544444433100 001234555666
Q ss_pred HHHcCCc--------------------HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHH
Q 006071 346 NFCKAEM--------------------YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQ 405 (662)
Q Consensus 346 ~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (662)
.|...|+ +++|...+.+.++..... ........++..+...+...|++++|...+++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666 666666666654432110 00001122445555566666666666666666
Q ss_pred HHhcC--CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 406 LMKKG--VLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 406 ~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
..+.. .++ ..++..+..++...|++++|...++..... +..+ ...++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 55432 111 124555555555566666666555554431 0000 023444555555555555555555555
Q ss_pred HHHcC----CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 475 MIEDG----HSPA-SSLFRSVMESLFEDGRVQTASRVMKSMV 511 (662)
Q Consensus 475 ~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (662)
..+.. ..+. ..++..+...+...|++++|...+++..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44220 0000 2233344444444555555555555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-11 Score=116.61 Aligned_cols=217 Identities=10% Similarity=0.050 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh-------cCCh-------HHHHHHHHhccc-CCCCCCHHHHHHHHHHH
Q 006071 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGR-------VGKL-------NHARCILLDMPK-KGVQWDEDMFEVLIESY 101 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 101 (662)
+.|+..|+.++... |.++..|..++..+.. .|++ ++|..+|++... ..+ .+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 78999999999986 8899999999988764 5776 889999998887 333 3677888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcC-HH-hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERS-VK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF-LSLKLE 178 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~ 178 (662)
.+.|++++|..+|+++.+.. |+ .. .|..++..+.+.|++++|..+|++.++.++ .+...|........ ..|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 89999999999999988743 43 33 788888888888999999999998887642 34444443333322 258888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEP--TVISYTTMIKGYVAVERADDALRIFD 255 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 255 (662)
+|..+|+...+..+ .+...|..++..+.+.|++++|..+|++..... ++| ....|..++......|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888876532 367778888888888888888888888887752 344 35577777777777888888888887
Q ss_pred HHhhC
Q 006071 256 EMKSF 260 (662)
Q Consensus 256 ~~~~~ 260 (662)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-11 Score=115.71 Aligned_cols=216 Identities=8% Similarity=0.022 Sum_probs=173.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-------EGNP-------DSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
++|...|+++....|.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 688899999999889999999999888763 5886 89999999999831233677899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCc-HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPA-SS-LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL-MRGHVEEAL 539 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 539 (662)
|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.++. +...|...+.... ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999964 454 33 7888888899999999999999999987554 4555544443322 379999999
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCC-CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 540 GRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD-CI--IDLASYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
++|++.++ ..|+ +..++..+...|++++|+.+|++++... .+ .....|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 3344 3345667778899999999999999963 22 34667888888999999999999999998
Q ss_pred HHcCC
Q 006071 613 MEKGG 617 (662)
Q Consensus 613 ~~~~~ 617 (662)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-13 Score=128.79 Aligned_cols=269 Identities=13% Similarity=0.043 Sum_probs=202.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC-CCHHhHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP-RDADAYI 453 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 453 (662)
+......+...|++++|...|+++.+..+.++ .++..+...+...|++++|...++.+... +.. ....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 44556678899999999999999999886663 67888999999999999999999886542 111 1256788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIEDGH-SPA----SSLFRSVMESLFEDGR--------------------VQTASRVMK 508 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~ 508 (662)
.+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 899999999999999999998875311 111 3367777788889999 999999999
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHhccCCHHHHHHHHH
Q 006071 509 SMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN-------FDSLLSVLSEKGKTIAAVKLLD 575 (662)
Q Consensus 509 ~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-------~~~~~~~~~~~g~~~~A~~~~~ 575 (662)
+.... +..+ ....+..+...+...|++++|++.+++..+. +..++ ...++..+...|++++|..+++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87654 2111 2346778889999999999999999988752 11122 2345667778999999999999
Q ss_pred HHhcCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C-CcHhhHHHHHHHHHhcCCcchhHHHHH
Q 006071 576 FCLGRDCIID-----LASYEKVLDALLAAGKTLNAYSILFKIMEKGG----V-TDWKSSDKLIAGLNQEGNTKQADILSR 645 (662)
Q Consensus 576 ~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (662)
++++...... ...+..++.++...|++++|.+.+++...... . .....+..+..+|...|++++|....+
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 8886532221 45677899999999999999999999875421 1 124466679999999999999977666
Q ss_pred Hhhhhc
Q 006071 646 MIRGEM 651 (662)
Q Consensus 646 ~~~~~~ 651 (662)
......
T Consensus 328 ~a~~~~ 333 (338)
T 3ro2_A 328 KHLEIS 333 (338)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 655443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=131.64 Aligned_cols=210 Identities=12% Similarity=0.001 Sum_probs=172.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP-DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 473 (662)
..+.+...++......+.+...+..+..++...|++ ++|...|+++.+.. +.+...|..+..+|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356677777777777788899999999999999999 99999999988864 3368899999999999999999999999
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--------CCHH
Q 006071 474 SMIEDGHSPASSLFRSVMESLFED---------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR--------GHVE 536 (662)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 536 (662)
+..+. .|+...+..+...+... |++++|+..++++++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99864 47777888888888888 9999999999999988766 678888899999888 8899
Q ss_pred HHHHHHHHHHhCCCCC---C----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 537 EALGRIDLMMQSGSVP---N----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 537 ~A~~~~~~~~~~~~~p---~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+|++.+++.++ ..| + +..++.++...|++++|...++++++..+. ....+..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887 334 3 345677778889999999999988887643 4555667888888889998888765
Q ss_pred HH
Q 006071 610 FK 611 (662)
Q Consensus 610 ~~ 611 (662)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-12 Score=109.22 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=108.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
+..|..+...+...|++++|+..|+++.+..|.++.++..+..+|...|++++|...+........ .+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHH
Confidence 345666667777777777777777777777777777777777777777777777777776665432 2555666666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
...++++.|...+.+..+.. +.+...+..+...+...|++++|+..|+++++.++. +...|..++.+|...|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 66777777777776666532 223455566666666677777777777776666554 5566666666677777777777
Q ss_pred HHHHHHHh
Q 006071 540 GRIDLMMQ 547 (662)
Q Consensus 540 ~~~~~~~~ 547 (662)
+.+++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=124.85 Aligned_cols=270 Identities=15% Similarity=0.050 Sum_probs=130.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCChhhHHH
Q 006071 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVLKAMIRL----S-IPTEAGHYGI 342 (662)
Q Consensus 272 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 342 (662)
....+...|++++|...++++.+. .|.+ ...+..+...+...|+++.|...+++.... + .+....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 334445555555555555555553 2323 234445555555556666666555554331 1 0112345566
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC--------------------hhHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ--------------------TGKAEIF 402 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 402 (662)
+...|...|++++|...+++.++..... ........++..+...+...|+ +++|...
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISREL---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6777777777777777777765543110 0000112245556666666677 6667666
Q ss_pred HHHHHhcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHhHHHHHHHHHhcCChHHHHHH
Q 006071 403 FRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDADAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 403 ~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
++...... +....++..+...+...|++++|...++...+. +. .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66654431 112234555566666666666666666555431 00 00112445555555555555555555
Q ss_pred HHHHHHcCCC-Cc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 472 LDSMIEDGHS-PA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-----ENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 472 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
+++..+.... ++ ..++..+...+...|++++|...++++.+.... .....+..+..+|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5554421100 00 223344444455555555555555554432100 0022333444444444555555544
Q ss_pred HHHHH
Q 006071 542 IDLMM 546 (662)
Q Consensus 542 ~~~~~ 546 (662)
+++..
T Consensus 326 ~~~a~ 330 (338)
T 3ro2_A 326 AEKHL 330 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-12 Score=122.55 Aligned_cols=233 Identities=10% Similarity=-0.013 Sum_probs=141.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC--CCC---ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCC--CCcc
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLS--IPT---EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL--DMEA 380 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~ 380 (662)
....+...|+++.|...+++..+.. .+. ...++..+...|...|+++.|+..+.+.++... ..+. ....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK----EHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCccchHHHH
Confidence 5566777888888888888876631 111 235677788888899999999999988876542 1110 1122
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDA 449 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 449 (662)
.++..+..+|...|++++|...++++.+.. ..+ ..++..+..+|...|++++|...+++..+. +. +...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 356667777778888888888887776543 111 235666777777777777777777766551 22 2234
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC-CHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDG----HSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKE-NLDL 521 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~ 521 (662)
.++..+..+|.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|..++++. +..| ....
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 566677777777777777777777665321 11111223445555566666 45555554443 1111 2234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+..+...|...|++++|.+.+++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666666666666666665553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=107.01 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=87.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
+...|..+...|.+.|++++|+..|++.++.. +-+...+..+...+...|++++|...++.+....+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34455555555555555555555555555432 123344455555555555555555555555554433 3444444555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHH
Q 006071 528 ALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTL 603 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 603 (662)
.+...++++.|.+.+++... ..|+ ...++.++...|++++|++.++++++..| .++..|..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 55555555555555555554 2222 22344455555666666666666665542 23445556666666666666
Q ss_pred HHHHHHHHHHHc
Q 006071 604 NAYSILFKIMEK 615 (662)
Q Consensus 604 ~A~~~~~~~~~~ 615 (662)
+|++.+++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 666666666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=121.76 Aligned_cols=235 Identities=14% Similarity=0.035 Sum_probs=162.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc----CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCChhhHH
Q 006071 272 LLPGLCDAGKMVEVQKVLREMVER----YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI------PTEAGHYG 341 (662)
Q Consensus 272 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~ 341 (662)
....+...|++++|...+++.... +..+....++..+...+...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556667777777777776553 11111234566677777777777777777776654210 11234677
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCC-CCccccHHHHHHHHHhcCChhHHHHHHHHHHh-----cC-CCCH
Q 006071 342 ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL-DMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK-----KG-VLDP 414 (662)
Q Consensus 342 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~ 414 (662)
.+...|...|++++|+..+++.++.... .+. .....++..+..+|...|++++|...+++... .. +...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEA----EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 7788888889999998888888765421 110 11123677788889999999999999999888 44 5567
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCc-HHh
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPRDADAYICLIESYLRKGE---PADAKTALDSMIEDGHSPA-SSL 486 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~ 486 (662)
.++..+..++...|++++|...++...+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 78899999999999999999999887652 111122345678888888888 67777777665 33333 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+..+...|...|++++|...+++..+.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667888899999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=122.47 Aligned_cols=236 Identities=10% Similarity=0.016 Sum_probs=166.9
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------C
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKK--------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------G 444 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 444 (662)
...++..+...+...|++++|..+++.+.+. .+....++..+...+...|++++|...++.+... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888899999999999999999884 3555678889999999999999999999988753 1
Q ss_pred -CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006071 445 -VPRDADAYICLIESYLRKGEPADAKTALDSMIED------GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--- 513 (662)
Q Consensus 445 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 513 (662)
.+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567888999999999999999999998864 2223 3456777888899999999999999998875
Q ss_pred ---CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCCC---HHHH-------HHHHhccCCHHHHHH
Q 006071 514 ---GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS-------GSVPN---FDSL-------LSVLSEKGKTIAAVK 572 (662)
Q Consensus 514 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~---~~~~-------~~~~~~~g~~~~A~~ 572 (662)
+..| ....+..+..+|...|++++|++.++++.+. ...+. .... ...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456778899999999999999999988752 12222 1111 112224566666677
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.++.+.... +.....+..++.+|.+.|++++|.+.+++.++.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777555532 233566778899999999999999999887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-12 Score=126.33 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=149.5
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHH
Q 006071 72 LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV-QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFN 150 (662)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 150 (662)
++++...++....... .+...+..+...+...|++ ++|.+.|+++.+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666554332 3667777777777777777 77777777777654 3456677777777777777777777777
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc--------CChH
Q 006071 151 KMLSEGIEPTRHTYNVMLWGFFLS---------LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF--------KKMD 213 (662)
Q Consensus 151 ~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~ 213 (662)
+.++. .|+...+..+...+... |++++|...+++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77764 34556667777777777 7777777777777766332 567777777777777 7788
Q ss_pred HHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 214 EAEKLFAEMKEKNIE---PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (662)
Q Consensus 214 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 290 (662)
+|...|++..... + .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|...+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887777642 2 366677777777888888888888887776643 3455667777777777777777776665
Q ss_pred HH
Q 006071 291 EM 292 (662)
Q Consensus 291 ~~ 292 (662)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-12 Score=120.72 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CC
Q 006071 268 TYTALLPGLCDAGKMVEVQKVLREMVER------YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL------S-IP 334 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~ 334 (662)
++..+...+...|++++|...++++.+. +..|.....+..+...+...|++++|...++.+... + .+
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4444444555555555555555554442 112223444555556666666666666666655442 1 11
Q ss_pred CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHh
Q 006071 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (662)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (662)
....++..+...|...|++++|...++++++.
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22345556666677777777777777766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-10 Score=113.02 Aligned_cols=227 Identities=10% Similarity=-0.035 Sum_probs=166.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CC-CHHhHH
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKG--VL----DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PR-DADAYI 453 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 453 (662)
....+...|++++|...|+++.... .+ ...++..+..+|...|+++.|...++...+. +. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4445678899999999999988754 22 3457888899999999999999999887652 11 11 245778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVE-----KGVKENLDLVA 523 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 523 (662)
.+..+|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.++ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 8999999999999999999888753 1111 134567778888999999999999999887 4333 366778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCC-C--CCCHH----HHHHHHhccCC---HHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQSG-S--VPNFD----SLLSVLSEKGK---TIAAVKLLDFCLGRDCIIDLASYEKVL 593 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~p~~~----~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (662)
.++.++...|++++|++.+++..+.. . .|... .+...+...|+ +++|+.++++.- ..+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence 89999999999999999999888722 1 23322 23344556677 788888887521 1112244566789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 006071 594 DALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
..|...|++++|.+.+++....
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-10 Score=112.02 Aligned_cols=166 Identities=16% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CC----CChhhHHH
Q 006071 273 LPGLCDAGKMVEVQKVLREMVERYI----PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS--IP----TEAGHYGI 342 (662)
Q Consensus 273 l~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~~ 342 (662)
...+...|++++|...++++..... .+....++..+...+...|+++.|...+.+..... .. ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777765311 11123456667777777788877777777765421 01 12345667
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCC-CccccHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD-MEASSYNPMIQHLCHNGQTGKAEIFFRQLMK-----KGVLDPVA 416 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 416 (662)
+...|...|++++|...+++.++.... .+.. ....++..+..++...|++++|...+++... ..+....+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMD----IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 777888888888888888877654311 0000 1122344555556666666666666666555 33333445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
+..+..++...|++++|...++...+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-10 Score=109.31 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=127.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC--CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCC--C-CHHhH
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKG--VLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP--R-DADAY 452 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~ 452 (662)
+...+...|+++.|...+++..... ..++ .++..+...+...|++++|...++..... +.. | ....+
T Consensus 59 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 138 (373)
T 1hz4_A 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHH
Confidence 3344444555555555555544432 1111 23445566666677777777666665431 111 1 22445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHH---
Q 006071 453 ICLIESYLRKGEPADAKTALDSMIEDGHS--P--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVA--- 523 (662)
Q Consensus 453 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~--- 523 (662)
..+...+...|++++|...+++....... + ....+..+...+...|++++|...+++.......+ ......
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 55666677777777777777776643211 1 12345555566677777777777777766541111 111111
Q ss_pred -HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC----C-hhhHHH
Q 006071 524 -KILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII----D-LASYEK 591 (662)
Q Consensus 524 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~-~~~~~~ 591 (662)
..+..+...|++++|...+++.......+. ...+...+...|++++|...+++++...... . ...+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 223345677777777777776654221111 1234455666777777777777666532111 1 124556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006071 592 VLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++.++...|++++|...+++...
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 67778888888888888887664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.3e-10 Score=108.26 Aligned_cols=238 Identities=12% Similarity=0.045 Sum_probs=114.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-Chhh
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVLKAMIRL----SIP--T-EAGH 339 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~ 339 (662)
.+...+...|+++.|...+++.........+ ..++..+...+...|+++.|...+++.... +.+ | ....
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 3334444455555555555554432100001 122344555556666666666666555432 111 1 2234
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAF 417 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 417 (662)
+..+...+...|++++|...+++.++.. +..+......++..+...+...|++++|...++...... ...+..+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVL----SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh----hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 4556666777777777777777766543 111111112344555556666677777777766665432 1111111
Q ss_pred H-----HHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcH-
Q 006071 418 N-----NLIRGHSKEGNPDSAFEIVKIMGRRGVPR---DADAYICLIESYLRKGEPADAKTALDSMIED----GHSPAS- 484 (662)
Q Consensus 418 ~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~- 484 (662)
. ..+..+...|++++|...++........+ ....+..+...+...|++++|...+++.... |..++.
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 1 22233556677777776666655432111 1123445555566666666666666555422 111111
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVE 512 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (662)
..+..+..++...|+.++|...+++...
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1233334444555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-10 Score=102.10 Aligned_cols=195 Identities=12% Similarity=-0.027 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (662)
+.++..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 457788888999999999999999999998886544677777779999999999999999999998753 2346678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHH----H
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENL-------DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDS----L 557 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~----~ 557 (662)
...+...|++++|+..++++++..+. +. ..|..+..++...|++++|++.++++++ ..|+ ... +
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 88899999999999999999887655 44 4577788888899999999999998887 5665 322 3
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
+.++. ..+..+++++..... .+...|. .......|.+++|++.+++..+..+
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~-~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLAS-SNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTT-TCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHH-----HHHHHHHHHHHhccc-CCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 33333 334444555555432 2233332 2334456778999999999888743
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-10 Score=98.49 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=105.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344555566667777777777777666666666677777777777777777777777666542 2355666666667777
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777666542 234455566666666677777777777766665433 455666666666666777777666
Q ss_pred HHHHHh
Q 006071 542 IDLMMQ 547 (662)
Q Consensus 542 ~~~~~~ 547 (662)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-10 Score=95.92 Aligned_cols=165 Identities=15% Similarity=0.060 Sum_probs=123.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+..++..+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456677778888888888888888888776443 67778888888888888888888888887754 3466777777888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 215 (662)
+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 3356667777777777788888888887777653 23566777777777777777777
Q ss_pred HHHHHHHHH
Q 006071 216 EKLFAEMKE 224 (662)
Q Consensus 216 ~~~~~~~~~ 224 (662)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=120.86 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=149.0
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...++.+...+...|++++|+..|+++++..|.+..++..+..+|...|++++|+..|+++.+.+.. +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999886533 68899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
|.+.|++++|++.+++.++.. +-+...+..+...+...|++++|++.|+++++..+. +...+..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999754 234678889999999999999999999999998776 788889999999999999999
Q ss_pred HHHHHHHHh
Q 006071 539 LGRIDLMMQ 547 (662)
Q Consensus 539 ~~~~~~~~~ 547 (662)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-10 Score=120.36 Aligned_cols=164 Identities=20% Similarity=0.159 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 266 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
..+|+.+..++...|++++|+..|++.++. .|.+..++..+..++.+.|++++|+..|++.++.. +.+...+..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344555555555555555555555555553 44455555555555555555555555555555432 333444555555
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+|...|++++|++.|+++++.. + -+...|..+..++...|++++|+..|+++.+..|.+..++..++.++.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~----P-----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN----P-----AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 5555555555555555544332 1 123344444444445555555555555555444444445555555555
Q ss_pred hcCChhHHHHHHHHHh
Q 006071 426 KEGNPDSAFEIVKIMG 441 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~ 441 (662)
..|++++|.+.++++.
T Consensus 157 ~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLV 172 (723)
T ss_dssp HTTCCTTHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHH
Confidence 5555555544444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-11 Score=110.79 Aligned_cols=223 Identities=11% Similarity=0.015 Sum_probs=152.7
Q ss_pred hcCChhHHHHHHHHHHhc-------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------CC-CCCHHhHHHHH
Q 006071 392 HNGQTGKAEIFFRQLMKK-------G-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------GV-PRDADAYICLI 456 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 456 (662)
..|+++.|..++++..+. . +....++..+..++...|++++|...++.+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777766652 2 345668889999999999999999999988753 11 22456788999
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHH
Q 006071 457 ESYLRKGEPADAKTALDSMIED------GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GV-KE-NLDLV 522 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~ 522 (662)
..|...|++++|...++++.+. .-.| ...++..+...+...|++++|...++++++. +. .| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998864 1113 3566778888999999999999999998875 11 22 34567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCCC---H-HHHHHHHhc------cCCHHHHHHHHHHHhcCCCCCC
Q 006071 523 AKILEALLMRGHVEEALGRIDLMMQS-------GSVPN---F-DSLLSVLSE------KGKTIAAVKLLDFCLGRDCIID 585 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~---~-~~~~~~~~~------~g~~~~A~~~~~~~~~~~~~~~ 585 (662)
..+..+|...|++++|+++++++.+. ...+. . ..+...... ...+.++...++... ...+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK-VDSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC-CCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-CCCHHH
Confidence 88999999999999999999988752 12222 1 112222222 223333444433221 111223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 586 LASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
...+..++.+|...|++++|.+.+++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556778999999999999999999987653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-09 Score=97.23 Aligned_cols=203 Identities=8% Similarity=0.022 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 90 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
++..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++.++..+ .+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 55677777777777777777777777777765335666666677777777777777777777776532 24556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT---VISYTTMIK 239 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 239 (662)
.+...|++++|...+++..+..+. +. ..|..+...+...|++++|...|+...+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 777777777777777777765322 34 34556666666777777777777776654 233 345555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHH
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM 306 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 306 (662)
+|...| ..+++.+...+ ..+...|..... ...+.+++|...+++..+. .|.+..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~~~ 218 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEIKQ 218 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 554433 23334443332 223333333222 2334456666666666654 444444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-10 Score=105.28 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSF------DV-KPNAVTYTALLPGLCDAGKMVEVQKVLREMVER------YIPP 299 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~ 299 (662)
++..+...+...|++++|...++++... +- +....++..+...+...|++++|...+.++... ...|
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4444445555555555555555444321 11 112334555555555666666666665555443 1123
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHh
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL------S-IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (662)
....++..+...+...|++++|...+++..+. + .+....++..+...|...|++++|...++++++.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666677777777777777666553 1 1223456677778888888888888888887664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=100.02 Aligned_cols=213 Identities=11% Similarity=0.033 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc-HH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---ADAYICLIESYLRKGEPADAKTALDSMIEDGH-SPA-SS 485 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~ 485 (662)
+.++..+..+...+...|++++|...|+.+.+.... + ...+..+..+|.+.|++++|...|++.++... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 455666666666677777777777777776664321 2 45666666667777777777777777665421 111 23
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006071 486 LFRSVMESLFE--------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSL 557 (662)
Q Consensus 486 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 557 (662)
.+..+..++.. .|++++|+..|+++++..+.. ......+.......+...+ ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~~~~~~~~~~~---------------~~~~l 154 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELVDDATQKIRELRAKLAR---------------KQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 44455555555 666666666666666654331 1111111100000000000 01345
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCc--Hhh
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAA----------GKTLNAYSILFKIMEKGGVTD--WKS 623 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~~~ 623 (662)
+..+...|++++|+..++++++..+... ...+..++.+|... |++++|++.+++++...+... ...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 234 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTA 234 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHH
Confidence 6677788999999999998888765432 45566788888866 888999999999887643322 223
Q ss_pred HHHHHHHHHhcCCcchh
Q 006071 624 SDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 624 ~~~l~~~~~~~g~~~~a 640 (662)
...+..++...|+.+++
T Consensus 235 ~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 235 EELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34455556555555554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.2e-10 Score=103.74 Aligned_cols=193 Identities=13% Similarity=0.017 Sum_probs=116.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhC----CCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHhHHHH
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRR----GVPRD-ADAYICLIESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSV 490 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l 490 (662)
+..|...|++++|...|.+.... +-+++ ..+|+.+..+|...|++++|+..+++.++... .+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888877766542 21111 45777778888888888888888877764310 111 2356666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-C--------HH
Q 006071 491 MESLFED-GRVQTASRVMKSMVEKGVKE-N----LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP-N--------FD 555 (662)
Q Consensus 491 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~--------~~ 555 (662)
...|... |++++|+..|++.++..+.. + ..++..++..+...|++++|+..+++..+..... . +.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 6777775 88888888888777652211 1 3456677777778888888888887777632221 1 12
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCCh----hhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL----ASYEKVLDALL--AAGKTLNAYSILFKIM 613 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 613 (662)
.++.++...|++++|+..++++++..+.... ..+..++..+. ..+++++|++.++++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 2344556677888888888877776543221 12233444443 3456777777765543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=9.5e-09 Score=93.57 Aligned_cols=242 Identities=10% Similarity=0.062 Sum_probs=131.6
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH
Q 006071 66 LGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA 145 (662)
Q Consensus 66 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 145 (662)
..-.|++..++.-...+... ........+.++|...|++... ....|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34556666666644433221 1223333444666666665531 01123332333332222 211 5
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 146 KRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI-SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+..|++++..+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666665543 33444445566666677777777777777655543 12456666667777777777777777777765
Q ss_pred CCCCC-----CHhhHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 006071 225 KNIEP-----TVISYTTMIKG--YVAVE--RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (662)
Q Consensus 225 ~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 295 (662)
. .| +..+...|+.+ ....| ++.+|..+|+++... .|+..+...++.++.+.|++++|...++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 34 23444444444 22223 677777777776554 344333333444666777777777777755442
Q ss_pred C-----C---CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006071 296 Y-----I---PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (662)
Q Consensus 296 ~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (662)
. . .|.++.+...++......|+ .|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 1 0 25566666566555555665 666777777664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-08 Score=100.20 Aligned_cols=376 Identities=7% Similarity=0.020 Sum_probs=219.6
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHH
Q 006071 173 LSL-KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER-ADDA 250 (662)
Q Consensus 173 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 250 (662)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777777777654 223 8888888898888774 4688888888877776663 3455
Q ss_pred HHHHHHHhh-CCC-CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCChHHHHH
Q 006071 251 LRIFDEMKS-FDV-KPNAVTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDN-SVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 251 ~~~~~~~~~-~~~-~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~ 323 (662)
..+|+.... .|. ..+...|...+..+.. .++.+.+..+|++++.. ++.+. ..|...... ........+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHH
Confidence 667776654 232 3356677777665432 35677788888888773 22122 122222111 11111222222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcC-C------h
Q 006071 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG-Q------T 396 (662)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------~ 396 (662)
++.+. .+.+..|..+++.+.... +. .+...|...+..-...+ . .
T Consensus 145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~----~~----~s~~~W~~y~~~E~~~~~~~~~~~~~ 195 (493)
T 2uy1_A 145 IVGDT---------------------LPIFQSSFQRYQQIQPLI----RG----WSVKNAARLIDLEMENGMKLGGRPHE 195 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHH----HT----CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHH---------------------hHHHHHHHHHHHHHHHHH----hh----ccHHHHHHHHHHHhcCCccCcchhhH
Confidence 22211 123444555555543221 11 12234555444433221 1 3
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
+.+..+|++++...+.++..|...+..+...|+.+.|..+++..... +.+...|.. |....+.++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 45678999999888888999999999999999999999999999887 334333332 2222122222 22222
Q ss_pred HcC---------C---CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 006071 477 EDG---------H---SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRID 543 (662)
Q Consensus 477 ~~~---------~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 543 (662)
+.- . ......|...+..+.+.+..+.|..+|+++ .. +..+...|...+..-...+ +++.|..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 011245666666666778899999999998 32 2335555543333333334 6899999999
Q ss_pred HHHh-CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 544 LMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 544 ~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
..++ .+..|+. ...++.....|+.+.|+.+++++.+ ....|...++.-...|+.+.+.+++++...
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8887 3333332 2345555678899999999998732 355566666656677999999888888774
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-08 Score=92.46 Aligned_cols=173 Identities=9% Similarity=0.015 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----CHHhHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-----DADAYI 453 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ 453 (662)
.++..+..++...|++++|+.++.+.+..++ .+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+..
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHH
Confidence 3344555666667777777777777666554 56667777777777777777777777777664 34 234444
Q ss_pred HHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCCHH
Q 006071 454 CLIES--YLRKG--EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV---------KENLD 520 (662)
Q Consensus 454 ~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~ 520 (662)
.++.+ ....| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+..+ ..++.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 44444 22223 777777777777643 24422333344467777788888777776554310 12455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVL 561 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 561 (662)
++..++.+....|+ +|.+++.++.+ ..|+...+.+.-
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~~ 293 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHHH
Confidence 55455555555665 67777777776 556644444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-08 Score=91.19 Aligned_cols=230 Identities=8% Similarity=-0.005 Sum_probs=179.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH----Hhc---
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG--NPDSAFEIVKIMGRRGVPRDADAYICLIESY----LRK--- 462 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 462 (662)
.....++|+.+++.++..+|.+..+|+.-..++...+ ++++++.+++.+...++. +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3445578999999999999999999999999999999 999999999999986544 566776655555 555
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--TASRVMKSMVEKGVKENLDLVAKILEALLMRGH------ 534 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 534 (662)
+++++++.+++.+.+.. +-+..+|..-...+...|.++ ++++.++++++.++. |...|+.-...+...|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999754 446788888777888888888 999999999999887 88888888887888776
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHH-HHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTI-AAVKLLDFCLGRD--CIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~-~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
++++++.+++++. ..|+ +.....++.+.|+.. ++..+.++.++.+ ...++..+..++++|.+.|+.++|++
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8999999998887 5555 334555666777644 4666777766643 12345667789999999999999999
Q ss_pred HHHHHHHcCCCCcHhhHHH
Q 006071 608 ILFKIMEKGGVTDWKSSDK 626 (662)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~ 626 (662)
.++.+.++-++-...-|+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHhccChHHHHHHHH
Confidence 9999887544434444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.14 E-value=9e-08 Score=95.92 Aligned_cols=370 Identities=9% Similarity=-0.019 Sum_probs=205.1
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC-hhHHHHHHHHHHhC-CCC-cCHHHHHHHHHHHH----hcCCH
Q 006071 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR-YMMAKRYFNKMLSE-GIE-PTRHTYNVMLWGFF----LSLKL 177 (662)
Q Consensus 105 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~ll~~~~----~~~~~ 177 (662)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..+.. |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888873 4788888888877777663 35566777776553 432 35566776666543 23567
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (662)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (662)
+.+..+|+.+.......-...|......- .......+..++.+.. +.+..|..+++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 77888888888742111112232222211 1112222333322211 1223333333333
Q ss_pred hhCCCCCCHHHHHHHHHHHHhC--CC-----HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 258 KSFDVKPNAVTYTALLPGLCDA--GK-----MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
...--..+...|...+..-... |- .+.+..+|++++.. .|..+..|...+..+.+.|+.+.|..++++...
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2110001333555544432221 11 34577888888885 355788899999999999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 006071 331 LSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (662)
. |.+...+.. |....+.++ +++.+.+.... ...+.+. . ...
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~---~~~~l~~~~~~------------------------~~~~~~~-----~-~~~ 282 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEA---VYGDLKRKYSM------------------------GEAESAE-----K-VFS 282 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTH---HHHHHHHHTC----------------------------------------CH
T ss_pred C--CCcHHHHHH----HHhhcchhH---HHHHHHHHHHh------------------------hccchhh-----h-hcc
Confidence 7 444333322 221111111 13333211100 0000000 0 000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCcHHhHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLFRS 489 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (662)
.....+|...+....+.++.+.|..+|+.+ .. ...+...|...+..-...+ +++.|..+|+...+.. +-+...+..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 112345666666666677788888888887 32 1234445543333222233 5888888888887643 222344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+......|+.+.|..+|+.+. .....|...+..-...|+.+.+.+++++...
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666677788888888888862 1466777777766777888888887777664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.12 E-value=8.7e-09 Score=92.13 Aligned_cols=193 Identities=10% Similarity=0.047 Sum_probs=119.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 006071 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHS-P-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVA 523 (662)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 523 (662)
+...+..+...+.+.|++++|+..|+++++.... | ....+..+..++...|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888889999999999998865321 1 1346677788888899999999999998887554322 2344
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCC
Q 006071 524 KILEALLM------------------RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID 585 (662)
Q Consensus 524 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (662)
.+..++.. .|++++|+..++++++ ..|+......++...+..... +
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~-------~------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDR-------L------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHH-------H-------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHH-------H-------
Confidence 45555544 3455555555555554 222211111111000000000 0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHHhcCCcchhHHHHHHhhhhccccch
Q 006071 586 LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQ 656 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 656 (662)
......++..|.+.|++++|+..++++++..+... ...+..+..+|.+.|++++|....+.+...++....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 00113567888888999999999998887643322 345677888899999999997777777766655544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=102.30 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCC---CC-c-
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRK-GEPADAKTALDSMIEDGH---SP-A- 483 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~-~- 483 (662)
.+++.+..+|...|++++|+..++...+. |-.. -..++..+...|... |++++|+..+++.++... .+ .
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555555555555555555555554431 1000 124566677777774 777777777777664310 00 0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH--
Q 006071 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL------DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD-- 555 (662)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 555 (662)
..++..+...+...|++++|+..|+++.+..+.... ..+..++.++...|++++|+..+++.++ +.|++.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc
Confidence 235666677777778888888888777776443221 1456677777778888888888777765 344321
Q ss_pred -------HHHHHHh--ccCCHHHHHHHHHHHhcC
Q 006071 556 -------SLLSVLS--EKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 556 -------~~~~~~~--~~g~~~~A~~~~~~~~~~ 580 (662)
.+...+. ..+++++|+..+++++..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1233332 346677777777765554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-09 Score=90.22 Aligned_cols=163 Identities=9% Similarity=-0.006 Sum_probs=114.6
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH-
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES- 100 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 100 (662)
........+...|++++|+..|+.+++.+ |.++.++..+..++...|++++|...++++....+ ++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 34455667788889999999998888776 77888888888889999999999999988877643 44433332222
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLET 179 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 179 (662)
+...+...+|...|++..+.. +.+...+..+..++...|++++|...|+++++..+.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233345677777777654 3456777778888888888888888888877754332 34566677777777788887
Q ss_pred HHHHHHHHHh
Q 006071 180 AIRFFEDMKS 189 (662)
Q Consensus 180 a~~~~~~~~~ 189 (662)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-09 Score=96.20 Aligned_cols=206 Identities=13% Similarity=-0.013 Sum_probs=135.7
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-C-CCHHhHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD---PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-P-RDADAYI 453 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~ 453 (662)
+...+......+...|++++|...|+.+....|.+ +.++..+..++...|++++|...|+.+.+..+ . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44556677778889999999999999999988777 88899999999999999999999999988532 1 2246677
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006071 454 CLIESYLR--------KGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (662)
Q Consensus 454 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (662)
.+..++.. .|++++|...|+++++.. |+. .....+. .+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHHH
Confidence 88888888 999999999999999753 432 2221110 01111000 0112445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC-CCCCCH----HHHHHHHhcc----------CCHHHHHHHHHHHhcCCCCCC--hh
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQS-GSVPNF----DSLLSVLSEK----------GKTIAAVKLLDFCLGRDCIID--LA 587 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~----~~~~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~~ 587 (662)
++.+|...|++++|+..++++++. +..|.. ..++.++... |++++|+..++++++..|... ..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 667777777777777777777662 222221 1233444433 777778888877777654433 22
Q ss_pred hHHHHHHHHHhcCCHHH
Q 006071 588 SYEKVLDALLAAGKTLN 604 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~ 604 (662)
....+..++...|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33344444444454444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-08 Score=91.38 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH----h
Q 006071 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-R-DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS----L 486 (662)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 486 (662)
++..+..++..+...|++++|...|+.+.+..+. | ....+..++.+|.+.|++++|+..|+++++.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4566777888899999999999999999875322 1 24678889999999999999999999999754 3321 3
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 006071 487 FRSVMESLFE------------------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (662)
Q Consensus 487 ~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (662)
+..+..++.. .|++++|+..|+++++..+. +...+...... +... ..+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~~~~------~~~~~- 148 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----VFLK------DRLAK- 148 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----HHHH------HHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----HHHH------HHHHH-
Confidence 4444444443 57899999999999987554 22222211110 0000 01100
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 549 GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 549 ~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
....++..+...|++++|+..++++++..|... +..+..++.++.+.|++++|++.++++...++
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 012356677889999999999999999865543 35677899999999999999999998887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-07 Score=87.61 Aligned_cols=223 Identities=11% Similarity=0.113 Sum_probs=153.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHhcccCCCCCCHHHHHHHHHHH----Hhc
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG--KLNHARCILLDMPKKGVQWDEDMFEVLIESY----GKK 104 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 104 (662)
......++|++.++.++..+ |.+..+|+.-..++...| ++++++.+++.+....+. +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 34445679999999999987 788889999999998888 999999999988887655 666777665555 444
Q ss_pred ---CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChh--HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---
Q 006071 105 ---GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK--- 176 (662)
Q Consensus 105 ---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--- 176 (662)
+++++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++++..+ .|...|+.....+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 67888888888888765 567778877777777778877 88888888877643 366677666555555555
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHH
Q 006071 177 ---LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE-AEKLFAEMKEKN--IEPTVISYTTMIKGYVAVERADDA 250 (662)
Q Consensus 177 ---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 250 (662)
++++++.++.+....+. |...|+.+-..+.+.|+... +..+.+.+...+ -+.+...+..++..|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 66677777766665433 66667666666666665333 334444443321 123455566666666666666666
Q ss_pred HHHHHHHhh
Q 006071 251 LRIFDEMKS 259 (662)
Q Consensus 251 ~~~~~~~~~ 259 (662)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-09 Score=92.53 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=88.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHH----------------HHHHHHhcCChHHHHHHHHhcccCCCCCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLK----------------MIEILGRVGKLNHARCILLDMPKKGVQWD 90 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 90 (662)
...+...|++++|+..|+.+.+.+ |.++.+|.. +..++.+.|++++|...|++..+..+. +
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-N 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-C
Confidence 346678999999999999999876 666777766 566666666666666666665554433 5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR--YMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
...+..+...+...|++++|...|+++.+.. |.+..+|..+..++...|+ ...+...+..... ..|....+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 5556666666666666666666666665543 2345555555555544332 2233333433321 111111222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 006071 169 WGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.++...|++++|...|++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 3333445555555555555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=90.59 Aligned_cols=145 Identities=7% Similarity=-0.023 Sum_probs=108.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
..++...|+++.|+..++.+.... |.++..+..+..+|.+.|++++|...|++.++..+. +..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 345556778899999998887654 556667788888999999999999999988877654 78888888889999999
Q ss_pred hhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHH-HHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006071 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRY-FNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 176 (662)
+++|...|+...+.. +.++.+|..+...+.+.|++++|... +++.++.. +-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999888765 34677888888888888888776654 47776653 2356666666666555553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-08 Score=88.60 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC----CHHHHHHHH
Q 006071 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG----RVQTASRVM 507 (662)
Q Consensus 432 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 507 (662)
+|...|+...+.| ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555543 55556666666666666666666666666543 33444444444544 4 666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCC---CC-HHHHHHHHhc----cCCHHHHHHHHH
Q 006071 508 KSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSV---PN-FDSLLSVLSE----KGKTIAAVKLLD 575 (662)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---p~-~~~~~~~~~~----~g~~~~A~~~~~ 575 (662)
++..+.+ +...+..+...|.. .+++++|++.+++..+.+.. |. ...+...|.. .+++++|+.+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 34455556666655 56667777776666654442 22 3344555544 567777777777
Q ss_pred HHhcCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 006071 576 FCLGRDCIIDLASYEKVLDALLAA-G-----KTLNAYSILFKIMEKGG 617 (662)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 617 (662)
++++.+ .++..+..++.+|... | ++++|++++++..+.+.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777651 2233445577776653 3 77777777777777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-09 Score=111.20 Aligned_cols=174 Identities=11% Similarity=-0.063 Sum_probs=113.7
Q ss_pred hcCCCHHHHHHHHHHHH--------HcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 31 HGAKNSEHALQFFRWVE--------RAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
...|++++|++.|+.++ +.+ |.+..++..+..++...|++++|...|+++.+..+. +...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 56677777777777776 444 566677777777777777777777777777665443 5667777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..|++++|...|+++.+.. +.+...|..+..++.+.|++++ +..|++.++.++ .+...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776654 3355666677777777777777 777777766532 255566666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
.|+++.+.+.. +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 77776655221 34555555555554443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=95.29 Aligned_cols=161 Identities=13% Similarity=0.096 Sum_probs=127.8
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH--H--
Q 006071 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD--S-- 556 (662)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-- 556 (662)
+.+...+..+...+...|++++|...|+++++..+. +...+..++.++.+.|++++|+..++++.. ..|+.. .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHH
Confidence 344566677778888999999999999999998776 678888899999999999999999998876 345532 1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcC
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 635 (662)
....+...++.++|...++++++..| .+...+..++..|...|++++|++.+++++..... .+...+..|+..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22235567888889999999998864 34556668999999999999999999999987543 23667788999999999
Q ss_pred CcchhHHHHH
Q 006071 636 NTKQADILSR 645 (662)
Q Consensus 636 ~~~~a~~~~~ 645 (662)
+.++|....+
T Consensus 270 ~~~~a~~~~r 279 (287)
T 3qou_A 270 TGDALASXYR 279 (287)
T ss_dssp TTCHHHHHHH
T ss_pred CCCcHHHHHH
Confidence 9999854433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-08 Score=79.93 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (662)
+..++..+...|++++|..+++.+.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555556666666555555432 2244555555555555566666666666555432 2233445555555566
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|++++|..+++.+.+..+. +...+..++.++...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666555333 344555566666666666666666665554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-08 Score=80.62 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=116.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
.+..+...+...|++++|..+++.+.+..+.+..++..++..+...|++++|..+++.+...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 466778888899999999999999999888889999999999999999999999999998764 3467888999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (662)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998754 33567788888999999999999999999987644
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=88.65 Aligned_cols=191 Identities=11% Similarity=0.039 Sum_probs=91.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+...+..+...|++++|...|++.....+. +...+... ..... ..........+..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHH
Confidence 334444555566677777777777776654321 23333330 00000 00001111225555
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC--hH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK--MD 213 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~ 213 (662)
+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...|+++.+..+. +...+..+..+|...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 556666666666666665542 224555555555666666666666666666554322 45555555555544332 22
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006071 214 EAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272 (662)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (662)
.+...++.... ..|....+..+..++...|++++|+..|++..+. .|+......+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 33344433321 1222223333444555566666666666666653 4555444433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=107.44 Aligned_cols=159 Identities=9% Similarity=-0.046 Sum_probs=137.5
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 391 CHNGQTGKAEIFFRQLM--------KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
...|++++|+..++++. +..+.+...+..+..++...|++++|...++.+.+.+. .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67899999999999998 66688888999999999999999999999999988643 3788999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
|++++|...|++.++.. +-+...+..+..++...|++++ +..|+++++.++. +...|..+..++...|++++|++.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998754 2245677888889999999999 9999999998776 6778888999999999999999999
Q ss_pred HHHHhCCCCCCHH
Q 006071 543 DLMMQSGSVPNFD 555 (662)
Q Consensus 543 ~~~~~~~~~p~~~ 555 (662)
+++.+ ..|+..
T Consensus 558 ~~al~--l~P~~~ 568 (681)
T 2pzi_A 558 DEVPP--TSRHFT 568 (681)
T ss_dssp HTSCT--TSTTHH
T ss_pred Hhhcc--cCcccH
Confidence 98876 677743
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.3e-08 Score=86.49 Aligned_cols=180 Identities=12% Similarity=-0.005 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----CHHHHHHH
Q 006071 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG----HVEEALGR 541 (662)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 541 (662)
.+|...|++..+.| +...+..+...|...+++++|+.+|++..+.+ +...+..+...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 66777788888889999999999999998875 56777778888888 6 89999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHhc----cCCHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 006071 542 IDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLA----AGKTLNAYSILFKI 612 (662)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 612 (662)
+++..+.+.......+...|.. .+++++|+.+++++++.++. ..+..+..++.+|.. .+++++|++++++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999876654445667777776 78999999999999998643 125666789999998 88999999999999
Q ss_pred HHcCCCCcHhhHHHHHHHHHhc-C-----CcchhHHHHHHhhhhcccc
Q 006071 613 MEKGGVTDWKSSDKLIAGLNQE-G-----NTKQADILSRMIRGEMSRG 654 (662)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~ 654 (662)
.+.++ +..++..|..+|... | +.++|....++....+...
T Consensus 156 ~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 156 SSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 98833 334566788888764 3 7899987777766655433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.8e-09 Score=88.02 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=98.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH-HH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES-YL 460 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 460 (662)
.+......+...|++++|...|+++.+..|.++..+..+..++...|++++|...++.+.... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 345556667777888888888888777777777888888888888888888888887776543 244333222211 11
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
..+...+|...+++..+.. +.+...+..+...+...|++++|...|+++++..+.+ +...+..+..++...|+.++|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222234566666665432 1234555566666666666666666666666655443 2345555666666666666666
Q ss_pred HHHHHHH
Q 006071 540 GRIDLMM 546 (662)
Q Consensus 540 ~~~~~~~ 546 (662)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-08 Score=91.62 Aligned_cols=154 Identities=13% Similarity=0.033 Sum_probs=74.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHH-HHHHHHHHHhcCCh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDM-FEVLIESYGKKGIV 107 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 107 (662)
.+...|++++|+..|+.+++.. |.++.++..+..++...|++++|...++++....+ +... .......+...++.
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHHHHHhhccc
Confidence 4445555555555555555554 45555555555555555555555555555554322 2221 11122223444455
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFED 186 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 186 (662)
++|...+++..... +.+...+..+...+...|++++|+..|.++++..+.. +...+..+...+...|+.++|...+++
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 55555555554433 2344455555555555555555555555554432211 133444455555555555555544444
Q ss_pred H
Q 006071 187 M 187 (662)
Q Consensus 187 ~ 187 (662)
.
T Consensus 281 a 281 (287)
T 3qou_A 281 Q 281 (287)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=87.57 Aligned_cols=139 Identities=10% Similarity=-0.044 Sum_probs=71.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
..|++++|+..++......+.++..+..+...|...|++++|.+.|+...+.++ -+..+|..+..+|.+.|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 345555555555555544444444555555556666666666666655555432 2455555555556666666666666
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006071 472 LDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRV-MKSMVEKGVKENLDLVAKILEALLMRG 533 (662)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (662)
|++.++.. +-+...+..+...+.+.|++++|.+. ++++++..+. ++..|......+...|
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 65555432 11234455555555555555444333 3555554443 4444544444444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.8e-09 Score=96.78 Aligned_cols=187 Identities=11% Similarity=-0.016 Sum_probs=104.8
Q ss_pred cCChhHHHHHHHHHHhcCC-------CCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHH
Q 006071 393 NGQTGKAEIFFRQLMKKGV-------LDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLI 456 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~-------~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~ 456 (662)
.|++++|.+++++..+..+ ++. ..|...+..|...|++++|...+....+. +-.+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666666554221 111 23445556667777777777777665442 1000 134666677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC---CCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-----NLDLVAKIL 526 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 526 (662)
.+|...|++++|+..+++.++... .+. ..++..+...|.. |++++|+..+++.++..... ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 777777777777777777654210 111 2345556666666 77777777777766542111 134556667
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC----CCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 527 EALLMRGHVEEALGRIDLMMQS----GSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.+|...|++++|++.+++.+.. +..+.. ..++.++...|++++|...+++++ ..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 7777777777777777766651 111111 112233345577777777777776 44
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-08 Score=99.72 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=115.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 472 (662)
.|++++|...++++.+..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3678889999999988888889999999999999999999999999998864 336788999999999999999999999
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHh
Q 006071 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GHVEEALGRIDLMMQ 547 (662)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 547 (662)
++..+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+..++... |++++|.+.+++.++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998754 234677888888999999999999999999888665 677888899999999 999999999998887
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-08 Score=101.85 Aligned_cols=155 Identities=9% Similarity=-0.071 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
.|++++|++.|+.+.+.. |.+..++..+..++...|++++|...+++..+..+. +...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999998876 778889999999999999999999999998887544 67888899999999999999999
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006071 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKLETAIRFFEDMKS 189 (662)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 189 (662)
.|++..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988865 4567788889999999999999999999988764 23567778888888888 899999999988887
Q ss_pred CCC
Q 006071 190 RGI 192 (662)
Q Consensus 190 ~~~ 192 (662)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-08 Score=91.59 Aligned_cols=130 Identities=12% Similarity=-0.041 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--cHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGH---SP--ASS 485 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 485 (662)
+++.+..+|...|++++|...+++..+. |-.. ...++..+...|.. |++++|+..+++.++... .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4555666666666666666666655431 1110 12456666677766 777777777777664210 00 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVK----EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
++..+...+...|++++|+..|+++++.... +. ...+..++.++...|++++|+..+++.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666677777888888888888877764111 11 2245556667777788888888888776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-06 Score=80.73 Aligned_cols=224 Identities=7% Similarity=-0.025 Sum_probs=166.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-C-ChH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-G-EPA 466 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 466 (662)
....+..++|+.+++.++..+|.+..+|+.-..++...| .+++++.+++.+...+.+ +..+|+.-...+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 344566678999999999999999999999998888888 599999999999987644 788888888777776 7 889
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC----
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--------TASRVMKSMVEKGVKENLDLVAKILEALLMRGH---- 534 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 534 (662)
+++.+++++.+.. +-+...|+.-...+...|.++ ++++.++++++.++. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 9999999999643 346677776665655555555 899999999999887 88889888888888776
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCH--------------------HHHHHHHHHHhcCC-----C
Q 006071 535 ---VEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKT--------------------IAAVKLLDFCLGRD-----C 582 (662)
Q Consensus 535 ---~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~ 582 (662)
++++++.+++.+. ..|+. ..+...+.+.|+. .+........+... .
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7899999988887 55653 2334455554443 22222222222221 0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 583 IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 583 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
..++.....++++|...|+.++|.+.++.+.++-++
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 234566678999999999999999999998876554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-06 Score=79.88 Aligned_cols=177 Identities=9% Similarity=0.047 Sum_probs=130.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-C-
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK-G- 105 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 105 (662)
++...+..++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.+....++ +..+|+.-...+... +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 4455667788999999999987 788889998888888888 589999999998887665 788888887777776 6
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChh--------HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--------MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK- 176 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~- 176 (662)
++++++..++.+.+.. +.|..+|+-..-++.+.|.++ ++++.++++++..+ -|...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 8888999999988765 467777777666666666665 78888888877643 367777777666666665
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 177 ------LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 177 ------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
++++++.++++....+. |...|+-+-..+.+.|.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 56777777776665433 66667665555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=84.66 Aligned_cols=185 Identities=14% Similarity=-0.046 Sum_probs=105.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHhhCCCCCC----------------
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNL-------IRGHSKEGNPDSAFEIVKIMGRRGVPRD---------------- 448 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 448 (662)
..++...|...|.++....|.....|..+ ...+...++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999999999999999988 5666666666666655555443 2222
Q ss_pred ------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HH
Q 006071 449 ------ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LD 520 (662)
Q Consensus 449 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 520 (662)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1223345556666677777777666665422 433344444445666666666666665432221 110 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-F----DSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.+..+..++...|++++|+..|++....+..|. . ...+.++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455556666666666666665554332243 1 123334445555555555555555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-07 Score=83.15 Aligned_cols=189 Identities=7% Similarity=-0.114 Sum_probs=135.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHH-------HHHHHhcCChHHHHHHHHhcccC------------CC-----
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKM-------IEILGRVGKLNHARCILLDMPKK------------GV----- 87 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~------------~~----- 87 (662)
..+++..|.+.|..+.+.+ |.....|..+ ..++...++..++...++.-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999998 8899999988 67777777777777666665541 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcC--HH
Q 006071 88 ---QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT--RH 162 (662)
Q Consensus 88 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~ 162 (662)
.........+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0113445566777888899999999998887644 433255566667888899999998888654431 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 225 (662)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 556667778888888888888888875432143 345566677778888888888888888775
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.6e-07 Score=78.70 Aligned_cols=93 Identities=8% Similarity=-0.094 Sum_probs=68.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|+..++++++..+. +...+..++.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345556677777888888888777653 456677777777778888888888888887776544 566777777788
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 006071 530 LMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~ 547 (662)
...|++++|++.+++..+
T Consensus 82 ~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHH
Confidence 888888888888877776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.5e-08 Score=79.69 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006071 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (662)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (662)
+...+..+...+.+.|++++|+..|++++. ..|+ +..++.++...|++++|+..|+++++..|. ++..|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 345667788888899999999999998887 4444 345667777889999999999988888654 455566789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 594 DALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+|.+.|++++|++.|++.+....
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-06 Score=79.04 Aligned_cols=161 Identities=7% Similarity=-0.010 Sum_probs=114.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIEDG-HSPASS----LFRSVMESLFEDGRVQTASRVMKSMVEKGVK-EN----LDLVA 523 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 523 (662)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..++++++.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999988632 122221 2223555667778999999999999885222 22 33678
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh----C-CCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC----C-hhhH
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQ----S-GSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII----D-LASY 589 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~-~~~~ 589 (662)
.++.+|...|++++|+..++++++ . +..+. ...++..|...|++++|+.+++++++..... . ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999988874 1 11111 2346667778999999999999888643221 1 5667
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 006071 590 EKVLDALLAAGK-TLNAYSILFKIME 614 (662)
Q Consensus 590 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 614 (662)
..++.++.+.|+ +++|.+.+++.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 789999999994 6999999988664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-06 Score=80.94 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=100.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHhHHHH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPV------AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICL 455 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 455 (662)
+..+...|++++|..+++......+.++. .+..+...+...+++++|...++.+...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566777777777777777765432222 2334566666667778888887777663211 12 2357777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 006071 456 IESYLRKGEPADAKTALDSMIED-----GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN-LDLVAK 524 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 524 (662)
..+|...|++++|...++++.+. +..+. ..++..+...|...|++++|...+++.++. +..+. ...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777778888887777777631 11111 235566666777777777777777776654 11111 456666
Q ss_pred HHHHHHhCC-CHHHHHHHHHHHHh
Q 006071 525 ILEALLMRG-HVEEALGRIDLMMQ 547 (662)
Q Consensus 525 l~~~~~~~g-~~~~A~~~~~~~~~ 547 (662)
++.++...| .+++|++.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777777777 35777777766553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-07 Score=72.82 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=54.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+...+..+.+.|++++|+..|++.++..+. +..+|..+..+|...|++++|+..|++..+.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 344555555555566666666666555554332 45555555555555666666666665555543 2345555555566
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 006071 136 ILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~ 155 (662)
+...|++++|+..|++.++.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 66666666666666655553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-07 Score=72.99 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006071 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (662)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (662)
|.....+...+..+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|+..|++.++.. + .
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p-----~ 79 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD----S-----K 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----T
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----h-----h
Confidence 3333444444445555555555555555544432 3334444444444444444544444444443322 1 1
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (662)
+...|..+..++...|++++|...|++..+..|.+..+...+
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 223344444444444444444444444444444444444333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-06 Score=75.13 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
.+..+...+...|++++|...|++.. .++..++..+...+...|++++|...|+...+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888775 3467788888888888888888888888887754 456677888888888
Q ss_pred HcCChhHHHHHHHHHHhCCCCc---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 138 RRGRYMMAKRYFNKMLSEGIEP---------------TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
..|++++|+..|++..+..... ....+..+..++...|++++|...|+.+.+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887653211 12556667777777888888888888877663
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.9e-06 Score=76.61 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=85.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCC--HHhHH
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDP------VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV---PRD--ADAYI 453 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 453 (662)
..+..+...|++++|...+....+..+... ..+..+...+...|++++|...++....... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455566666666666666655443222 1233344555566666677666666654211 111 33566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH---cC-CCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIE---DG-HSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKG----VKE-NLDLV 522 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~ 522 (662)
.+...|...|++++|...++++.+ .. ..+ ...++..+...|...|++++|...+++.++.. ... -...|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666666666666552 11 011 11355555556666666666666666655431 000 13445
Q ss_pred HHHHHHHHhCCCHHHH-HHHHHHHH
Q 006071 523 AKILEALLMRGHVEEA-LGRIDLMM 546 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A-~~~~~~~~ 546 (662)
..++.+|...|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566666666666666 44455443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-05 Score=72.97 Aligned_cols=220 Identities=8% Similarity=-0.112 Sum_probs=155.4
Q ss_pred HhcCChh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 391 CHNGQTG-KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN----------PDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 391 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
.+.|.++ +|+.+++.+...+|.+..+|+.--..+...+. +++++.+++.+...+++ +..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3445544 79999999999999999998876666655444 57888888888876543 788888888888
Q ss_pred HhcCC--hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----
Q 006071 460 LRKGE--PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR-VQTASRVMKSMVEKGVKENLDLVAKILEALLMR---- 532 (662)
Q Consensus 460 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 532 (662)
...+. +++++.+++.+.+.. +-|...|+.-...+...|. ++++++.++.+++.++. |...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 88774 789999999999754 3467778777777777887 68999999999998877 777887766666554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHH----HHHHHHhcc-----------CCHHHHHHHHHHHhcCCCCCChh
Q 006071 533 ----------GHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEK-----------GKTIAAVKLLDFCLGRDCIIDLA 587 (662)
Q Consensus 533 ----------g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 587 (662)
+.++++++.+++... ..|+.. ..-..+... +.++++++.++++++..|.. ..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 457788888888776 455532 222333332 35678888888888776543 22
Q ss_pred hHHHHHH---HHHhcCCHHHHHHHHHHHHHcC
Q 006071 588 SYEKVLD---ALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 588 ~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
.+..++. .+-..|..++..+.+.++.+..
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 2222221 1224677778888888877653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8.7e-08 Score=78.51 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=50.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 134 (662)
+..++..+...+.+.|++++|...|+++....+. +...|..+..+|...|++++|+..|+++.+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3444555555555555555555555555544332 44555555555555555555555555555443 233444555555
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 006071 135 LILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~ 154 (662)
+|...|++++|+..|++.++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=80.41 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=102.9
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCCh-
Q 006071 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-YGKKGIV- 107 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 107 (662)
+...|+++.|+..|+.+.+.. |.++.+|..+..++...|++++|...|++.....+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 356789999999999999887 788999999999999999999999999998876543 67788888888 7788998
Q ss_pred -hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006071 108 -QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (662)
Q Consensus 108 -~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (662)
++|...|+.+.+.. +.+...+..+...+...|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998865 4567888889999999999999999999998864
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.3e-07 Score=78.97 Aligned_cols=155 Identities=13% Similarity=-0.075 Sum_probs=79.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh----CCCC-CCHHhHHHHHHHHHhcCChH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR----RGVP-RDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~ 466 (662)
..|++++|...++.+.........++..+...+...|++++|...+++... .+.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 356666666644444332234555666666666667777777666666544 1111 12345555666666666666
Q ss_pred HHHHHHHHHHHc----CCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhCCCH
Q 006071 467 DAKTALDSMIED----GHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKG--V-KEN--LDLVAKILEALLMRGHV 535 (662)
Q Consensus 467 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~ 535 (662)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+.. . .+. ...+..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666665532 1011 12234445555666666666666666655331 1 100 12234455555566666
Q ss_pred HHHHHHHHHHH
Q 006071 536 EEALGRIDLMM 546 (662)
Q Consensus 536 ~~A~~~~~~~~ 546 (662)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-05 Score=71.76 Aligned_cols=219 Identities=10% Similarity=-0.014 Sum_probs=159.7
Q ss_pred cCCcH-HHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCHHHH
Q 006071 349 KAEMY-DRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ----------TGKAEIFFRQLMKKGVLDPVAF 417 (662)
Q Consensus 349 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~ 417 (662)
+.|.+ ++|+.+++.++..+ |. +...|+.--..+...+. +++++.+++.+....|.+..+|
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n----P~-----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW 111 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN----PD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW 111 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC----TT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC----ch-----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34443 46778877775433 11 22334433333322222 6789999999999999999999
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 006071 418 NNLIRGHSKEGN--PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGE-PADAKTALDSMIEDGHSPASSLFRSVMESL 494 (662)
Q Consensus 418 ~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (662)
+.-..++...++ +++++.+++.+.+.... |...|+.-...+...|. ++++++.++++++.. +-|...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 999888888884 89999999999987544 88899888888888888 599999999999865 34566776666555
Q ss_pred Hhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHhCC
Q 006071 495 FED--------------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR-----------GHVEEALGRIDLMMQSG 549 (662)
Q Consensus 495 ~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 549 (662)
... +.++++++.+..++...+. |...|+.+-..+.+. +.++++++.++++.+
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle-- 266 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE-- 266 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--
Confidence 544 4588999999999998877 888887666656555 457899999999998
Q ss_pred CCCCH--HH--H---HHHHhccCCHHHHHHHHHHHhcCC
Q 006071 550 SVPNF--DS--L---LSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 550 ~~p~~--~~--~---~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
..|+. .. + ...+...|..+++..++.+..+.+
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 66662 21 1 112234678889999999888875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=9.9e-07 Score=74.24 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=44.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+...|+++.|+..|+.+.+.. |.+..++..++.++...|++++|...+++..+..+. +..++..+...+...|+++
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 98 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhccHH
Confidence 4444555555555555555443 444555555555555555555555555554443321 3444444555555555555
Q ss_pred HHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQ 119 (662)
Q Consensus 109 ~A~~~~~~~~~ 119 (662)
+|...|+++.+
T Consensus 99 ~A~~~~~~a~~ 109 (166)
T 1a17_A 99 AALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-06 Score=72.33 Aligned_cols=127 Identities=16% Similarity=0.059 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (662)
.+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555555555555555555432 2244555555555555566666665555555432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAK--ILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~ 545 (662)
..|++++|...++++.+..+. +...+.. .+..+...|++++|++.+.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 566666666666665555333 3333322 222244555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=90.41 Aligned_cols=151 Identities=11% Similarity=-0.072 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--------------HHhHHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD--------------ADAYICLIESY 459 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 459 (662)
+++++|...++......+.+...+..+...+...|++++|...|+...+...... ...|..+..+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444443344667788888888888999999999988887543221 46777777788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA- 538 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 538 (662)
.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++++..+. +...+..+..++...|++++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877643 234566777777777788888888888887777655 566677777777777777777
Q ss_pred HHHHHHHH
Q 006071 539 LGRIDLMM 546 (662)
Q Consensus 539 ~~~~~~~~ 546 (662)
..++++|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-06 Score=79.54 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (662)
+...+..+...+...|++++|...|++.+.. .|.+...+..+..++.+.|++++|...++...+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455566666677777777777777777664 45567777777777777777777777777776653 44566677777
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhh
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.+|...|++++|+..|+.+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777777776554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.3e-07 Score=74.54 Aligned_cols=110 Identities=9% Similarity=-0.020 Sum_probs=78.0
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006071 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (662)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 121 (662)
.|+.++..+ |.+...+..+...+...|++++|...|+......+. +...|..+..++...|++++|+..|+++....
T Consensus 9 ~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555544 556667777777777788888888888777765443 67777777777777788888888887777654
Q ss_pred CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
+.++..+..+..++...|++++|+..|++.++.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666777777777788888888877777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-05 Score=73.85 Aligned_cols=166 Identities=11% Similarity=-0.010 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC-----HHhHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CcC--HH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERS-----VKSYDALFKLILRRGRYMMAKRYFNKMLSEGI---EPT--RH 162 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 162 (662)
.+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344445555666666666666665554321111 01233344455556666666666666654211 111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC-CC--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC----CCCC-CH
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKS---RGI-SL--DVVTYNTMINGYNRFKKMDEAEKLFAEMKEK----NIEP-TV 231 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 231 (662)
+++.+...|...|++++|...++++.+ ... .+ ...++..+..+|...|++++|...+++.... +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 556666666666666666666666552 110 11 1145666666666677777777666665432 1111 13
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 006071 232 ISYTTMIKGYVAVERADDA-LRIFDEMK 258 (662)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 258 (662)
.+|..+..+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4566666667777777666 55555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.5e-07 Score=77.64 Aligned_cols=121 Identities=11% Similarity=0.058 Sum_probs=61.9
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC----CC-CCCHHHHHHHHHHHHhcC
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK----GV-QWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 105 (662)
...|++++|.+.++.+... .+....++..+..++...|++++|...+++.... +. .....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3456777777755544332 1244556666666667777777776666665431 11 112334555555666666
Q ss_pred ChhHHHHHHHHHHHc----CCC--cCHHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQL----GVE--RSVKSYDALFKLILRRGRYMMAKRYFNKML 153 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~----g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 153 (662)
++++|...+++..+. +.. .....+..+...+...|++++|...+++..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666666555442 100 112334455555555566666655555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-06 Score=82.65 Aligned_cols=126 Identities=11% Similarity=0.002 Sum_probs=86.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (662)
..+..+...+...|++++|+..|+++++..+... ...|..+..+|...|++++|+..++++++ .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--L 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 3455555566666666666666666666544422 46677788888888888888888888877 3
Q ss_pred CCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006071 551 VPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA-YSILFKIM 613 (662)
Q Consensus 551 ~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 613 (662)
.|+ +..++.++...|++++|+..|+++++..+. +...+..++.++.+.|++++| .+.++++.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 234566677788888888888888877543 345566788888888888888 44555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-06 Score=68.62 Aligned_cols=119 Identities=12% Similarity=-0.000 Sum_probs=66.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 134 (662)
+...+..++..+...|++++|...+++.....+. +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555556666666666666666665544322 45555566666666666666666666655543 234555566666
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006071 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 176 (662)
.+...|++++|...|++..+..+ .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666655421 244445555555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.9e-07 Score=72.62 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
.+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|++++..++. +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33344444444444444444444444322 112333444444444444444444444444444333 2333344444444
Q ss_pred hCCCHHHHHHHHHHHHh
Q 006071 531 MRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|++.|++.++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.1e-07 Score=84.19 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=57.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 006071 231 VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLG 310 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (662)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...+++.++. .|.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445555555666666666666666655432 234555666666666666666666666666553 4555666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 006071 311 VQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~ 330 (662)
++...|++++|...|....+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=73.69 Aligned_cols=120 Identities=8% Similarity=0.080 Sum_probs=55.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH-HHhcCCh--HHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES-YLRKGEP--ADA 468 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 468 (662)
..|++++|...++......+.++.++..+..+|...|++++|...|+.+.+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34555555555555555555555555555555555555555555555554432 1234444444444 4444444 555
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
...++++.+.. +.+...+..+...+...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555444322 112333334444444444444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-06 Score=68.57 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=78.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
+.+...+..++..+...|++++|...|++..+.... +..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 445567777777777777888887777777665433 56677777777777777777777777777653 3456677777
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 173 (662)
..++...|++++|...|++..+... .+...+..+...+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 7777777777777777777765422 233344444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-06 Score=66.88 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=76.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...+..++..+...|++++|..+++++.+..+ .+..++..+...+...|++++|...|+.+.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 55667777777777777777777777766543 256677777777777777777777777776654 3456677777777
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006071 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (662)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 172 (662)
+...|++++|...|+++....+ .+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 7777778788777777766532 24444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-06 Score=67.50 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=60.7
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+..+...+...|++++|...|+.+....+.+..++..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666666666665542 2245556666666
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 006071 459 YLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~ 477 (662)
+...|++++|...+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-06 Score=65.49 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (662)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 333333444444444444444333321 1123333334444444444444444444433321 11223333333334444
Q ss_pred CCHHHHHHHHHHHHH
Q 006071 498 GRVQTASRVMKSMVE 512 (662)
Q Consensus 498 g~~~~a~~~~~~~~~ 512 (662)
|++++|...++++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-06 Score=68.39 Aligned_cols=118 Identities=8% Similarity=0.023 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG 170 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 170 (662)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555666666666666666655543 2345555556666666666666666666655542 2234455555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 171 FFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
+...|++++|...++...+... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666555422 244555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.7e-07 Score=71.97 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=54.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 133 (662)
.+...+..+...+...|++++|...|+.....++. +...|..+..++...|++++|...|+...... +.++..+..+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 34444555555555566666666666555554332 45555555555555566666666665555543 23444555555
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 006071 134 KLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~ 154 (662)
.++...|++++|...|++.++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666665555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.5e-06 Score=65.76 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
.|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++++.++. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 44444555555555555555555555432 123444555555555555555555555555555443 3444555555555
Q ss_pred hCCCHHHHHHHHHHHHh
Q 006071 531 MRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|++.+++.++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.1e-07 Score=77.76 Aligned_cols=144 Identities=9% Similarity=-0.019 Sum_probs=73.9
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---------------HHhHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---------------ADAYICLIES 458 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~ 458 (662)
|+++.+.+.++......+.....+..+...+...|++++|...|+.......... ...|..+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 97 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97 (198)
T ss_dssp ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332222223344566667777777777777777777766421111 1455555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
|...|++++|+..+++.++.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..++...++.+++
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655432 223444555555555666666666666665555433 444455555555544444444
Q ss_pred H
Q 006071 539 L 539 (662)
Q Consensus 539 ~ 539 (662)
.
T Consensus 176 ~ 176 (198)
T 2fbn_A 176 D 176 (198)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.4e-06 Score=65.79 Aligned_cols=95 Identities=11% Similarity=-0.029 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
.|......+.+.|++++|...|++..+..+. +...|..+..++...|++++|...|++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4444444455555555555555554443322 34445555555555555555555555544432 223444444555555
Q ss_pred HcCChhHHHHHHHHHHh
Q 006071 138 RRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~ 154 (662)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-06 Score=68.81 Aligned_cols=92 Identities=12% Similarity=-0.053 Sum_probs=83.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+...+...|++++|+..|+.+...+ |.++..|..+..++...|++++|...|++....++. ++..+..+..++...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 4557788999999999999999987 789999999999999999999999999999887654 7788999999999999
Q ss_pred ChhHHHHHHHHHHHc
Q 006071 106 IVQESVKIFDIMKQL 120 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~ 120 (662)
++++|...|+...+.
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=5e-06 Score=65.98 Aligned_cols=96 Identities=10% Similarity=0.109 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CcC----HHhHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV--ERS----VKSYDA 131 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~~ 131 (662)
++..++..+.+.|++++|+..|++.++..+. +..+|..+..+|...|++++|+..|+...+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3344444444444444444444444443322 344444444444444444444444444443210 000 123444
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 006071 132 LFKLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~ 154 (662)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=62.57 Aligned_cols=97 Identities=18% Similarity=0.080 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
..+..++..+...|++++|...|+......+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34445555555555555555555555543322 44555555555555555555555555555443 23445555555555
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 006071 137 LRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~ 155 (662)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5566666666666555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=76.16 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
+..+...+...|++++|...|++..+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555554444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.8e-06 Score=67.89 Aligned_cols=96 Identities=8% Similarity=-0.028 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
..+..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|+..++++++.++. +...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555554432 113344444444455555555555555555444333 344444445555
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 006071 530 LMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~ 547 (662)
...|++++|++.+++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 555555555555444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-06 Score=64.62 Aligned_cols=98 Identities=8% Similarity=-0.015 Sum_probs=46.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc--CHHhHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVER--SVKSYDAL 132 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l 132 (662)
+...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 3444444455555555555555555554443222 34444444455555555555555555554432 12 34444445
Q ss_pred HHHHHHc-CChhHHHHHHHHHHh
Q 006071 133 FKLILRR-GRYMMAKRYFNKMLS 154 (662)
Q Consensus 133 ~~~~~~~-g~~~~A~~~~~~~~~ 154 (662)
..++... |++++|.+.++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 5555555 555555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=66.26 Aligned_cols=94 Identities=12% Similarity=-0.107 Sum_probs=62.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
.......+...|++++|+..|+.+++.. |.++.+|..+..++...|++++|+..|++..+..+. +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444556666777777777777776665 566667777777777777777777777766665443 5566666666666
Q ss_pred hcCChhHHHHHHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~ 119 (662)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66777777777766655
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-05 Score=64.12 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (662)
+...+..+...+...|++++|...|+..+.. .|.+..++..+..++...|+++.|...++...+.. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 4455555666666666666666666666554 34455666666666666666666666666665543 34455666666
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhh
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.+|...|++++|+..|+.+++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666666665544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=61.20 Aligned_cols=95 Identities=16% Similarity=0.017 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 33444444444444444444444444321 112333444444444445555555555444444332 3344444444444
Q ss_pred hCCCHHHHHHHHHHHHh
Q 006071 531 MRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=7.7e-06 Score=64.18 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006071 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (662)
+...+.+.|++++|...+++.++.. +.+...+..+..++...|++++|+..++++++.++. +...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344444455555555555444322 113334444444444455555555555554444333 33444444444445555
Q ss_pred HHHHHHHHHHHHh
Q 006071 535 VEEALGRIDLMMQ 547 (662)
Q Consensus 535 ~~~A~~~~~~~~~ 547 (662)
+++|+..+++.++
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-05 Score=63.95 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCC----HHhHHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRD----ADAYICLI 456 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~ 456 (662)
+..+...+.+.|++++|+..|+++++..|.++.+|..+..+|...|++++|+..++...+.+. .++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 444555555666666666666666665555666666666666666666666666655543210 001 12344444
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 006071 457 ESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~ 477 (662)
.++...|++++|+..|++.++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-05 Score=77.20 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 388 QHLCHNGQTGKAEIFFRQLMKKGVLDP-----------------VAFNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
..+...|++++|.+.|..+.+..+... .++..++..|...|++++|.+++..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566777777777777666552211 124445555555555555555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-05 Score=66.52 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=63.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
...+..+...+...|++++|+..|++..+..+.+...+..+..+|...|++++|+..++...+.. +.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455566666666777777777777766666666666666666666777777777666666643 22456666666666
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 006071 460 LRKGEPADAKTALDSMIED 478 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~ 478 (662)
...|++++|...|++.++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.7e-06 Score=68.26 Aligned_cols=55 Identities=15% Similarity=-0.095 Sum_probs=30.8
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCI-----IDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.+...|++++|..+++++++.... .....+..++..+...|++++|.+.+++...
T Consensus 98 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334455555555555544432100 0133455677777777888888877777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=61.25 Aligned_cols=98 Identities=8% Similarity=-0.013 Sum_probs=66.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHhHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIE 457 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 457 (662)
...+..+...+...|++++|...++++.+..+.+..++..+..++...|++++|...++...+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34555666666777777777777777777666667777777777777777777777777766642 22 4566666677
Q ss_pred HHHhc-CChHHHHHHHHHHHHc
Q 006071 458 SYLRK-GEPADAKTALDSMIED 478 (662)
Q Consensus 458 ~~~~~-~~~~~a~~~~~~~~~~ 478 (662)
++... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-05 Score=63.35 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
...+..+...+...|+++.|...|+......+.++.++..+..++...|++++|...++...+.+ +.+...+..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 33445555555555666666666666555555555555555555555556665555555555533 22445555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 006071 460 LRKGEPADAKTALDSMIE 477 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~ 477 (662)
...|++++|...+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.2e-05 Score=62.50 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006071 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (662)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (662)
...+..+...+...|++++|...+++..+. .|+ ...+..+...+...|++++|+..+++.++..+. +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 334444444444444444444444444432 122 233444444444455555555555554444332 3444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+..++...|++++|++.+++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555554444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.4e-05 Score=75.91 Aligned_cols=198 Identities=10% Similarity=-0.022 Sum_probs=113.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCH---------------HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDR---------------ETHLKMIEILGRVGKLNHARCILLDMPKKGVQW- 89 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 89 (662)
-.+.+...|++++|++.|..+++..+...+. .++..++.+|...|++++|.+.+..+.+.-...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3556778899999999999998865222221 236677788888888888888877765421111
Q ss_pred CH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHhHHHHHHHHHHcCChhHHHHHHHHHHhC--CC-
Q 006071 90 DE----DMFEVLIESYGKKGIVQESVKIFDIMKQL----GVER-SVKSYDALFKLILRRGRYMMAKRYFNKMLSE--GI- 157 (662)
Q Consensus 90 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~- 157 (662)
+. .+.+.+...+...|+++.|..++...... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12222333334457777777777665432 1111 2345666677777777777777777666432 11
Q ss_pred -Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 158 -EP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSR----GISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 158 -~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
.+ ...++..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1335556666666667777777666665432 11111 2334444455556666666665555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=9.2e-06 Score=64.80 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=51.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CcC----HHhHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV--ERS----VKSYD 130 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 130 (662)
..+..++..+...|++++|...|++.....+. +..++..+...+...|++++|...++.+.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34455555555555666666555555544322 445555555555555566666555555544321 011 44455
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 131 ALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
.+..++...|++++|...|++....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555556666666655555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.9e-05 Score=60.40 Aligned_cols=92 Identities=12% Similarity=-0.070 Sum_probs=57.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHH
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDR---ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIE 99 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 99 (662)
+...+...|++++|+..|+.+.+.. |.++ .++..+..++...|++++|...|+.+.+..+. + ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 4445566677777777777776654 3344 46666666666777777777777666654332 2 445556666
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 006071 100 SYGKKGIVQESVKIFDIMKQL 120 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~ 120 (662)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.6e-05 Score=60.30 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 006071 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN----AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMK 307 (662)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 307 (662)
..+..+...+...|++++|...|++.... .|+ ...+..+..++...|++++|...+++.... .|.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 34444444445555555555555554443 233 344444455555555555555555555543 3334455555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
+..++...|++++|...|++...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=63.96 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC--CC----HHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ--WD----EDMFEVL 97 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 97 (662)
..+...+...|+++.|+..|+.+.+.. |.++.++..++.++...|++++|...+++.....+. ++ ..++..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 445667888999999999999999887 778999999999999999999999999998765432 12 6788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 98 IESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 98 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
...+...|++++|...|+.+.+.. |+...+..+....
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 999999999999999999998854 5666655554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=7.4e-06 Score=81.94 Aligned_cols=118 Identities=9% Similarity=-0.055 Sum_probs=92.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+...|++++|++.|+.+++.. |.+..+|..+..++.+.|++++|...+++..+..+. +..++..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 4567889999999999999887 778899999999999999999999999998887554 6788888999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHH--HHHcCChhHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKL--ILRRGRYMMAKRYFN 150 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 150 (662)
+|.+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988764 2344455555555 777888888888887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=65.63 Aligned_cols=59 Identities=17% Similarity=0.012 Sum_probs=44.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
++.++...|++++|+..++++++.++ .+...|..++.+|...|++++|++.+++.+...
T Consensus 69 la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 69 MSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45566677888888888888877653 345566678888888888888888888888764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.5e-05 Score=76.73 Aligned_cols=119 Identities=11% Similarity=-0.057 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (662)
.+..+...+.+.|++++|+..|+++++..+... ...|..+..+|.+.|++++|+..++++++ ..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC
Confidence 344444455555555555555555555433211 45677777888888888888888887776 34
Q ss_pred CC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 552 PN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 552 p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
|+ +..++.+|...|++++|+..|+++++..+. +...+..++.++.+.|++++|.+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 234556667778888888888888877543 33455567777878887777764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-06 Score=83.67 Aligned_cols=131 Identities=12% Similarity=-0.025 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
++++|...|+......+.....+..+...+.+.|++++|...|+++.+....... + ..+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----H
Confidence 3444444444333333344556777777788888888888888777663211110 0 000000 0
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
... .....+..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++
T Consensus 312 ~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 312 SES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 000 01233444444555555555555555555554433 444455555555555555555555555554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0001 Score=58.41 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHhHHHHHHH
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDP---VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---ADAYICLIES 458 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 458 (662)
.+...+...|++++|...|+.+.+..|.++ .++..+..++...|++++|...++.+.+.... + ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344455566666666666666666554444 45556666666666666666666666553211 2 4445555666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 006071 459 YLRKGEPADAKTALDSMIED 478 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~ 478 (662)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=65.87 Aligned_cols=131 Identities=17% Similarity=0.024 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-cHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICLIESYLRKGEPADAKTALDSMIEDG----HSP-ASS 485 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 485 (662)
++..+...+...|++++|...++...+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555555555555555554431000 01 1244555555556666666666555554321 000 022
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKG--VK---ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
.+..+...+...|++++|...+++..+.. .. .....+..+..++...|++++|++.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444445555566666665555554330 00 012233444555555555555555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.9e-06 Score=64.51 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 33 AKNSEHALQFFRWVERAGL-FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
.|++++|+..|+.+++.+. .|.+..++..+..++...|++++|...|++..+..+. +..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776520 0345566777777777777777777777777665543 5666777777777777777777
Q ss_pred HHHHHHHHc
Q 006071 112 KIFDIMKQL 120 (662)
Q Consensus 112 ~~~~~~~~~ 120 (662)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-05 Score=60.88 Aligned_cols=103 Identities=17% Similarity=0.038 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKE------NL-----DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
+......+...|++++|+..|++.++..+.. +. ..|..+..++...|++++|+..+++.++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~-------- 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH-------- 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3444455666777777777777776664431 22 2666777777777777777776665544
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASY----EKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+|++..+..+ .....| +..+.+|...|++++|++.|++.++.
T Consensus 86 -----------------l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 -----------------YFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp -----------------HHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------hhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2333333332 223344 56777777888888888888777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00018 Score=73.30 Aligned_cols=172 Identities=8% Similarity=-0.100 Sum_probs=138.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN----------PDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
....++|+..++.+....|.+..+|+.-..++...|+ ++++++.++.+.+.+.+ +..+|..-..++.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3455688999999999999999999988888888777 89999999999987544 888999888888899
Q ss_pred C--ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-------
Q 006071 463 G--EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG-RVQTASRVMKSMVEKGVKENLDLVAKILEALLMR------- 532 (662)
Q Consensus 463 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 532 (662)
+ ++++++..++++.+.. +-+...|+.-...+...| .++++++.++++++.++. |...|+....++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999865 346778888777888888 899999999999988777 788888777776653
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHH
Q 006071 533 -------GHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (662)
Q Consensus 533 -------g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (662)
+.++++++.+++... ..|+ +......+...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999988887 4454 4445666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=4.1e-05 Score=76.55 Aligned_cols=158 Identities=8% Similarity=-0.005 Sum_probs=115.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (662)
...+...|++++|...|+++.+..+.+..++..+..+|...|++++|...++++.+... .+...|..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 33456789999999999999999999999999999999999999999999999998753 37889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHcCC----------CCCHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMES--LFEDGRVQTASRVMK-----------SMVEKGV----------KENLDLVA 523 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~-----------~~~~~~~----------~~~~~~~~ 523 (662)
+|...+++..+... .+...+..+..+ +...|++++|++.++ +...... ..+...+.
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 99999999987531 223344444444 788899999999988 3332211 12345566
Q ss_pred HHHHHHHhCCC--HHHHHHHHHHHH
Q 006071 524 KILEALLMRGH--VEEALGRIDLMM 546 (662)
Q Consensus 524 ~l~~~~~~~g~--~~~A~~~~~~~~ 546 (662)
.++..+...+. .+++..++.+..
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a~ 195 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQVK 195 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 67777776664 344444555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=62.60 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=49.9
Q ss_pred cCChHHHHHHHHHHHHcCC--CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006071 462 KGEPADAKTALDSMIEDGH--SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
.|++++|+..|++.++.+. +.+...+..+...+...|++++|+..++++++..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666664321 122345555666666667777777777766666554 4556666666667777777777
Q ss_pred HHHHHHHh
Q 006071 540 GRIDLMMQ 547 (662)
Q Consensus 540 ~~~~~~~~ 547 (662)
+.+++.+.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0003 Score=71.67 Aligned_cols=173 Identities=7% Similarity=-0.035 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK----------LNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
....++|++.++.++..+ |.+..+|+.-..++...|+ ++++...++.+.+..++ +..+|..-...+.
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345678899999998887 7888888888888877777 78888888888876655 7778888888888
Q ss_pred hcC--ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-----
Q 006071 103 KKG--IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG-RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS----- 174 (662)
Q Consensus 103 ~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----- 174 (662)
+.| +++++++.++++.+.. +.+..+|+...-++.+.| .++++++.++++++..+ -|...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc
Confidence 888 6688888888888765 467778887777777777 78888888888877643 3666676665555442
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006071 175 ---------LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (662)
Q Consensus 175 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 211 (662)
+.++++.+.++.+....+. |...|+.+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3345555555555544322 45555555444444444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.8e-05 Score=73.10 Aligned_cols=80 Identities=14% Similarity=-0.058 Sum_probs=37.9
Q ss_pred HHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcc
Q 006071 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTK 638 (662)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 638 (662)
.++...|++++|+..++++++..+ .+...|..++.+|...|++++|++.++++++... .+...+..+..++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444432 2233344455555555555555555555554432 23333444455555555554
Q ss_pred hh
Q 006071 639 QA 640 (662)
Q Consensus 639 ~a 640 (662)
++
T Consensus 359 ~a 360 (370)
T 1ihg_A 359 DK 360 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=58.94 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------c-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSP------A-----SSLFRSVMESLFEDGRVQTASRVMKSMVEK------ 513 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 513 (662)
.+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666666432110 1 227777788888888999988888888876
Q ss_pred -CCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 514 -GVKENLDLV----AKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 514 -~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
++. +...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 45667 7788888999999999999888876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.9e-05 Score=73.86 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555554433 444555555555555555555555555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=61.27 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=59.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKK------------------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
.+......+.+.|+++.|...|...+.. .+.+..++..+..+|.+.|++++|+..++.+.+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4566677788889999999999888775 2223345555555666666666666666655554
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
+ +.+...|..+..+|...|++++|...|++.++
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 22455555556666666666666666665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=6e-05 Score=72.42 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=68.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAG--------------LFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
+..+...+...|++++|+..|+.+++.. ..+.+..+|..+..++.+.|++++|+..+++..+..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3445567778889999999988887621 00334455555556666666666666666655554332
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA 145 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 145 (662)
+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666666665555542 22344444444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.9e-05 Score=73.51 Aligned_cols=123 Identities=11% Similarity=-0.035 Sum_probs=80.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------CCCCCC----HH
Q 006071 493 SLFEDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQ------SGSVPN----FD 555 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~p~----~~ 555 (662)
.+...|++++|+.++++.++. |.. | ...+++.++.+|...|++++|+.++++.++ .+..|+ ..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888777654 221 1 234567788888888888888887777664 123333 23
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcC-----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGR-----DCII--DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.++.+|...|++++|+.+++++++. |+.. .......+..++...|++++|...++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777777777777776642 2221 1344456777777888888888888887653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00022 Score=57.23 Aligned_cols=111 Identities=11% Similarity=-0.070 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCHHHHHHHH
Q 006071 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLL 574 (662)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~ 574 (662)
++++|..+|++..+.+.. ... +...|...+.+++|++.+++..+.+.......+...|.. .+++++|..++
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 456666666666655422 222 445555555566666666666654433334445555544 56777777777
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 006071 575 DFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 617 (662)
+++.+.+ ++..+..++..|.. .+++++|++++++..+.+.
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7776653 23444556777766 6777777777777766653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.2e-05 Score=72.66 Aligned_cols=146 Identities=12% Similarity=-0.007 Sum_probs=71.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
+......+...|++++|+..|+.+++.. +.+. . +...|+..++...+. ..+|..+..+|.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-M-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-H-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-h-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3455667778999999999999988764 2222 1 112233333332221 125666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHhcCCHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG-FFLSLKLETAI 181 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~ 181 (662)
+.|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++.++..+ .+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776654 34566777777777777777777777777765421 123333333333 22345566666
Q ss_pred HHHHHHHhC
Q 006071 182 RFFEDMKSR 190 (662)
Q Consensus 182 ~~~~~~~~~ 190 (662)
..|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0012 Score=52.86 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCChHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKT 470 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 470 (662)
+.++|...|++..+.+.+... +...|...+.+++|.++|+...+.| ++..+..+...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 455566666666665533333 5555555555566666666655543 44555555555555 455556666
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006071 471 ALDSMIEDGHSPASSLFRSVMESLFE----DGRVQTASRVMKSMVEKG 514 (662)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 514 (662)
.|++..+.| +......+...|.. .+++++|..+|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 665555543 23334444444444 455555555555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00017 Score=71.57 Aligned_cols=121 Identities=10% Similarity=-0.080 Sum_probs=89.6
Q ss_pred HHHhCCCHHHHHHHHHHHHh---CCCCC---C----HHHHHHHHhccCCHHHHHHHHHHHhcC-----CCC--CChhhHH
Q 006071 528 ALLMRGHVEEALGRIDLMMQ---SGSVP---N----FDSLLSVLSEKGKTIAAVKLLDFCLGR-----DCI--IDLASYE 590 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~---~~~~p---~----~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~ 590 (662)
.+...|++++|+.++++.++ .-+.| + .+.++.+|...|++++|..+++++++. ++. .....++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46688999999999998875 22333 3 344677888999999999999988853 211 1256688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-cHhhHHHHHHHHHhcCCcchhHHHHHHhh
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEK-----G-GVT-DWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (662)
.|+.+|...|++++|..++++.+.. | +.| .......|..++...|++++|+.+..+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997742 1 223 23344567777888999999987766664
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00018 Score=55.60 Aligned_cols=80 Identities=6% Similarity=-0.062 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 38 HALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIM 117 (662)
Q Consensus 38 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 117 (662)
.|+..|+.+.+.. |.++..+..+..++...|++++|...|++.....+. +...|..+..++...|++++|...|+..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888776 678888888888888999999999988888876543 6778888888888888888888888887
Q ss_pred HHc
Q 006071 118 KQL 120 (662)
Q Consensus 118 ~~~ 120 (662)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=6.2e-05 Score=60.57 Aligned_cols=87 Identities=8% Similarity=-0.025 Sum_probs=64.7
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChH----------HHHHHHHhcccCCCCCCHHHHHHHHHH
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLN----------HARCILLDMPKKGVQWDEDMFEVLIES 100 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (662)
.+.+.+++|++.|+.+.+.+ |.++.+|..+..++...++++ +|+..|++.++..+. +..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34567899999999999987 889999999999998887654 777777777766544 56677777777
Q ss_pred HHhcC-----------ChhHHHHHHHHHHHc
Q 006071 101 YGKKG-----------IVQESVKIFDIMKQL 120 (662)
Q Consensus 101 ~~~~g-----------~~~~A~~~~~~~~~~ 120 (662)
|...| ++++|++.|++..+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 76653 566666666666653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00041 Score=53.55 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
.+...|+.+.+..+.++..+..+..++...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666666666666665543 22455566666666666666666666666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00025 Score=57.09 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=73.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP----------DSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
.+.+.+++|...++...+..|.++..|..+..++...+++ ++|+..|++..+.++. +...|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3556788999999999999999999999999998888765 4888888888876433 6678888888887
Q ss_pred hcC-----------ChHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 006071 461 RKG-----------EPADAKTALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 461 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
..| ++++|+..|++.++. .|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 764 667777777776653 35544443333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00013 Score=55.91 Aligned_cols=58 Identities=12% Similarity=-0.009 Sum_probs=32.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (662)
+...+...|++++|++.|+.+++.. |.++.++..+..++...|++++|...+++....
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344555556666666666555554 445555555555555556666665555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00036 Score=53.39 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC------HHhHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD------ADAYIC 454 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 454 (662)
..+..+...+...|++++|...|+++.+..|.++.++..+..++...|++++|...++...+.... + ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 356666777778888888888888888877777888888888888888888888888887765322 2 444555
Q ss_pred HHHHHHhcCChHHHHHHH
Q 006071 455 LIESYLRKGEPADAKTAL 472 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~ 472 (662)
+..++...|+++.|...+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 555555555555544433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00084 Score=48.94 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=50.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 006071 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (662)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 134 (662)
+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455666666666677777777776666654332 55666666666667777777777776666543 234555555555
Q ss_pred HHHH
Q 006071 135 LILR 138 (662)
Q Consensus 135 ~~~~ 138 (662)
++..
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00092 Score=48.73 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=42.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
.+..+...+...|++++|...+++.....+.++.++..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344455555566666666666666665555555566666666666666666666666555532 123444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00068 Score=50.66 Aligned_cols=66 Identities=8% Similarity=0.060 Sum_probs=46.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
|.++.++..+..++...|++++|+..|++..+..+. +...|..+..+|...|++++|...|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677777777777777777777777777765543 556677777777777777777777777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0017 Score=48.49 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=33.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
...+..+...+...|++++|+..|+++++.++. +...|..+..+|...|++++|++.+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445555555555555555555555555443 33445555555555555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0007 Score=50.46 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLD-LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
...+...|++++|+..++++++..+. +.. .+..+..+|...|++++|++.+++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33455666667777777666665444 444 566666666666677777766666665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.012 Score=54.82 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|++.+++...
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344443333444455555555555555554 3444444455555555555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0095 Score=55.46 Aligned_cols=142 Identities=8% Similarity=-0.062 Sum_probs=100.9
Q ss_pred CccccHHHHHHHHH--hc---CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---C-Ch-hHH---HHHHHHHhh-C
Q 006071 378 MEASSYNPMIQHLC--HN---GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE---G-NP-DSA---FEIVKIMGR-R 443 (662)
Q Consensus 378 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~-~~a---~~~~~~~~~-~ 443 (662)
.+...|...+.+.. .. ....+|..+|+++++..|.....+..+..+|... + .. ... ...++.... .
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 35567777776543 22 3457899999999999998888887766665421 1 11 111 112222111 1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (662)
..+.++.+|..+...+...|++++|...+++++..+ |+...+..+...+...|++++|.+.++++...++. ..+|.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~--~~t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS--HHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cChHH
Confidence 235578889888888888899999999999999875 77777777788889999999999999999987654 44443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0039 Score=60.70 Aligned_cols=94 Identities=11% Similarity=-0.034 Sum_probs=61.3
Q ss_pred hcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHH
Q 006071 496 EDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTI 568 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~ 568 (662)
..|++++|..++++.++. |.. | ...+++.++.+|...|++++|+.++++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 457899999999888764 222 1 235678888889999999999988876653
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 569 AAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++++.+-...+.....++.++.+|...|++++|+.++++.++
T Consensus 369 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 ----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 223233322222244455677777777777777777776553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.98 E-value=6e-07 Score=84.41 Aligned_cols=115 Identities=8% Similarity=0.001 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHH------------HHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFE------------IVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
.+..+=.++-..|....|++.-+. +-+++.++ +-...-..-...|.++++|++++.+.++
T Consensus 408 N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk----- 479 (624)
T 3lvg_A 408 NNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK----- 479 (624)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST-----
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh-----
Confidence 344444556666777777665433 22333332 2334444555667778888877655432
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (662)
...|.-.+.....+|+.+-+.++++-.++.| +.+.+.+.+..|...=+++-++++
T Consensus 480 ----DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 480 ----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp ----TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred ----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 1234444556677899999999999888875 446777777777777788888775
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0087 Score=58.36 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=53.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 006071 493 SLFEDGRVQTASRVMKSMVEK---GVKE----NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (662)
.+...|++++|+.++++.++. -..| ...+++.++.+|...|++++|+.++++++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~------------------ 357 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME------------------ 357 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH------------------
Confidence 344566667777666666543 1111 133455666666666666666666554432
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
++++.+-...+.....++.++.+|...|++++|+.++++.++
T Consensus 358 -------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 -------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 112122222112244556677777777777777777777553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0054 Score=59.68 Aligned_cols=88 Identities=9% Similarity=-0.152 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHHHHhcC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CC-CcHhhHHHHH
Q 006071 563 EKGKTIAAVKLLDFCLGR---DCII----DLASYEKVLDALLAAGKTLNAYSILFKIMEK-----G-GV-TDWKSSDKLI 628 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~-~~~~~~~~l~ 628 (662)
..|++++|+.+++++++. -..+ ....++.++.+|...|++++|+.++++.+.. | .. ....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888888777653 1122 1466788999999999999999999997742 1 12 2555788899
Q ss_pred HHHHhcCCcchhHHHHHHhhhh
Q 006071 629 AGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 629 ~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
..|...|++++|+.+.++..++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999997666655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.04 Score=59.63 Aligned_cols=127 Identities=12% Similarity=0.008 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (662)
..++..+.+.|..+.|.++.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence 455555666677666665442211 1122334567777776664322 25667777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
+++.|..+|.++.. +..+...+...|+.+...++.+.+...|. ++....+|...|++++|++++
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776531 22333344445555554444444433321 222333344455555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.024 Score=41.15 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.++|..++++.++.++. +......+...+.+.|++++|+..|+++++
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555555444 444444455555555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.046 Score=59.14 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456666665553322 24555666666666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.098 Score=42.73 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=60.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHH
Q 006071 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKL 573 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~ 573 (662)
....|+++.|.++.+.+ .+...|..+.......|+++-|...|.+.. |+..+...|.-.|+.+.-.++
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHHH
Confidence 34567777777666554 256667777777777777777776666543 345555555566666666666
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 574 LDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
.+.+...+ .++....++.-.|+.++++++|.+
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55444433 233444555566777777776644
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.013 Score=43.27 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRE-THLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
.....+...|++++|+..|+.+.+.. |.++. ++..+..++...|++++|...|++..+..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34556778889999999999998876 67778 8888899999999999999999988876544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.015 Score=46.12 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=36.9
Q ss_pred CcHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 482 PASSLFRSVMESLFEDG---RVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
++..+...+..++.+++ ++++++.+++...+.+ +.-+...+..+.-++.+.|++++|+++++.+++ ..|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 44444445555555555 4445666666655543 211234444455556666666666666666665 4454
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.017 Score=42.01 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (662)
++|..++++..+.. +.++.+...+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444443332 22333333344444444444444444444433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.21 E-value=1.6 Score=46.30 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
|..+++...+.++.+.+.++|..+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666777788888888888888764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.3 Score=39.85 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=24.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcc
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMP 83 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 83 (662)
+......|+++.|.++.+.+ .+...|..+.......|+++-|.++|++..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34444455555555554433 234455555555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.019 Score=56.04 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=64.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHH
Q 006071 456 IESYLRKGEPADAKTALDSMIED---GHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-EN-LDL 521 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~ 521 (662)
+..+.+.|++++|..++++.++. -+.|+ ..+++.+..+|...|++++|+.++++++.. |.. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678888888888887743 12222 346777788888899999999998887653 222 22 345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
++.++..|...|++++|+.++++.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67788888888888888888876654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.029 Score=41.92 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=50.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhcCCC------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDC------IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
...++..+...|++..|...++.+++... ......+..++.++.+.|++++|+..+++++...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34577788889999999999998887521 12356778899999999999999999999887643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.047 Score=40.72 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKG------VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
...+...+...|+++.|...++.+++.. ..+....+..+..++.+.|++++|+.+++++.+ ..|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3455566666677777777776666541 112455666777777777777777777777766 45553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.029 Score=49.91 Aligned_cols=54 Identities=13% Similarity=-0.062 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCC
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-AGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 618 (662)
|+.++|.+.|+++++.++..+..++..+++.|+. .|++++|.+.+++.+..+..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 6666666666666666544334444455666655 36666666666666655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.15 E-value=1.7e-05 Score=74.84 Aligned_cols=263 Identities=15% Similarity=0.115 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006071 162 HTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (662)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (662)
..|..+..+....+.+.+|++-| .+. -|...|..++.+..+.|.+++-...+....+. ..+...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 34556666666666555555433 111 14555666666666666666666666554443 22334445666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 006071 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA 321 (662)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 321 (662)
++.++..+..+++ -.||..-...+.+-|...|.++.|.-+|..+ .-|..|..++...|++..|
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i----------sN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS----------CCCTTTSSSSSSCSGGGSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC----------ccHHHHHHHHHHHHHHHHH
Confidence 6666644332222 1345444555666666666666665555432 1233334444555555544
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHH
Q 006071 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (662)
.+.-+ -..++.||..+-.+|...+++.-|.-.--.++ ....-...++..|-..|.+++-+.
T Consensus 190 VdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniI-------------vhadeL~elv~~YE~~G~f~ELIs 250 (624)
T 3lvg_A 190 VDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------------VHADELEELINYYQDRGYFEELIT 250 (624)
T ss_dssp TTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-------------CCSSCCSGGGSSSSTTCCCTTSTT
T ss_pred HHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhc-------------ccHHHHHHHHHHHHhCCCHHHHHH
Confidence 43221 13456677777778877777766544433332 111123345556777788888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCC------CHHhHHHHHHHHHhcCChHHHH
Q 006071 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPR------DADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
+++............|+-|.-.|++- ++++..+.++....+ +++. ....|.-++-.|..-.+++.|.
T Consensus 251 LlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 251 MLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp THHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88887766677888888888888775 566666666554332 3221 2345777777777777777653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.062 Score=47.85 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-CChHH
Q 006071 396 TGKAEIFFRQLMKKGVL--DPVAFNNLIRGHSKE-----GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-GEPAD 467 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 467 (662)
...|...++++++..+. +...|..+...|... |+.++|.+.|++..+.+..-+..++..+...++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45677888888888765 667899999999884 89999999999988865333477788888888874 88999
Q ss_pred HHHHHHHHHHcCCC--CcHHh
Q 006071 468 AKTALDSMIEDGHS--PASSL 486 (662)
Q Consensus 468 a~~~~~~~~~~~~~--~~~~~ 486 (662)
+...+++.+..+.. |+...
T Consensus 259 a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHcCCCCCCCChhH
Confidence 99999998876544 44433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.15 Score=39.88 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCCCCHH-hHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNP------DSAFEIVKIMGRRGVPRDAD-AYICLIE------SYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 477 (662)
+.|+.+|-..+....+.|++ ++.+++|++.... ++|+.. .|...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666777777766666777 6667777766653 444421 1111111 11233677777777777765
Q ss_pred cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE 517 (662)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 517 (662)
.+-+- ...|.....--.+.|+...|.+++...+..++.|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42221 4445444444566777777777777777776664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.98 E-value=2.1 Score=45.49 Aligned_cols=257 Identities=11% Similarity=0.023 Sum_probs=132.8
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCC-CCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--------CCHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQS-TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--------LDPVA 416 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~ 416 (662)
+....|+.++++.++...+. .. ...+....-..+.-+....|..+++..++........ +....
T Consensus 383 GlIh~g~~~~gl~~L~~yL~-------~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLP-------GSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTST-------TSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcc-------ccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 45667888888777766531 10 1111122223333445566666677777777665432 11112
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHh--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 006071 417 FNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADA--YI--CLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 417 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
-.++.-++...|. -+++.+.+..+.... +... .. .+...+.-.|+.+....++..+.+.. .-+..-...+.
T Consensus 456 gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalg 531 (963)
T 4ady_A 456 GASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHH
Confidence 2233333333332 245566666655432 2211 22 23334556677777778888776532 11222222333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-H--HHHHHhccCC
Q 006071 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPNFD-S--LLSVLSEKGK 566 (662)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~--~~~~~~~~g~ 566 (662)
-++...|+.+.+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..+.. . +.-++...|+
T Consensus 532 LGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSS
T ss_pred HHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCC
Confidence 3455778888888888887653 22222221 234556778889777777888887532 11111 1 2223334566
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 006071 567 TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT-LNAYSILFKIMEKG 616 (662)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 616 (662)
.+.+.++++...+. ..+....-..++-++...|.. .+|++.+.++....
T Consensus 610 ~e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 610 YTTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp CSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 66677777644432 222222222334444445544 68899999987544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.066 Score=41.82 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=52.8
Q ss_pred CCCHHhHHHHHHHHHhcCCh------HHHHHHHHhcccCCCCCCH-HHHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKL------NHARCILLDMPKKGVQWDE-DMFEVLIE------SYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 119 (662)
|.++.+|-..+..+-+.|+. ++.+++|++.... ++|+. ..|...+. .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55666777666666666766 6666666665543 22221 11111111 11222556666666666654
Q ss_pred cCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 006071 120 LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE 158 (662)
Q Consensus 120 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 158 (662)
.+-. =...|......-.++|+...|.+++...+..+..
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3211 1444555555555566666666666665555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.04 Score=43.78 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG---KLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
...+.+.|....+.+ +++..+...+.-++.+.+ ++++++.+|+.+.+.+ +..+...+..+..+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 445556666665555 466777777777777766 5557777777766654 1113455556666667777777777
Q ss_pred HHHHHHHHc
Q 006071 112 KIFDIMKQL 120 (662)
Q Consensus 112 ~~~~~~~~~ 120 (662)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777663
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.61 Score=35.61 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
...++.....|..+.-.+++..+....++++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3334444444555555555554444334455555555555555555555555555554444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.12 Score=39.46 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=29.7
Q ss_pred CcHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 482 PASSLFRSVMESLFEDGRVQT---ASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
++..+-..+..++.++..... ++.+++.+.+.+ +.-.......+.-++.+.|++++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333344444444444333 455555444432 111223333344555555555555555555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.2 Score=40.19 Aligned_cols=130 Identities=10% Similarity=0.089 Sum_probs=71.8
Q ss_pred CCCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 006071 479 GHSPAS--SLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-------LDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (662)
Q Consensus 479 ~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (662)
|+.|.. .++..-+..+...|.++.|+-+.+.+... +..|+ ..++..++.++...|++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444443 34445566778889999998888876654 22222 124456788888999999999988887641
Q ss_pred -CCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 549 -GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 549 -~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
..-|...+......-...... ... ...+...-+.++.+|.+.|++++|+.+++.++.+.-
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~-------s~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQ-------SQC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHCC---------------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred HHHHhcCCCccccccccCCCcc-------ccc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 111111100000000000000 000 112234445699999999999999999998776644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=5.6 Score=38.76 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=114.6
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH----Hh
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH----SK 426 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 426 (662)
|+++.|++.+..+.+... ..............++..|...++++...+.+..+.+...........+++.+ ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r---~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR---QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS---SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh---hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 567777776655544321 23333344556777888899999999988888777665533344444444433 22
Q ss_pred cCChhHH--HHHHHHHhh--CC-CCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc---HHhHHHHHHH
Q 006071 427 EGNPDSA--FEIVKIMGR--RG-VPR---DADAYICLIESYLRKGEPADAKTALDSMIED--GHSPA---SSLFRSVMES 493 (662)
Q Consensus 427 ~~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 493 (662)
....+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+... +.... ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3333321 122211111 01 111 1233456788888899999999999888632 22111 2345555677
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 494 LFEDGRVQTASRVMKSMVEK----GVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|...+++..|..++.++... ...|+ ...+...+..+...+++.+|-..|.++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88889999999888887532 22222 23345666677778888888887776654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.49 Score=49.15 Aligned_cols=48 Identities=17% Similarity=-0.055 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcC
Q 006071 586 LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (662)
..-|..+|....|.+.++||++.|+..+... -+..++..|+..|...+
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcC
Confidence 4557778888888888888888888888654 37777778888887766
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.32 E-value=1.3 Score=33.80 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHhhCCCC-CCHHhHHHHHHHHHhcCChHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDS---AFEIVKIMGRRGVP-RDADAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
...+...|......+.++..+-..+..++.++.+... ++.+++.+.+.+.+ -.....-.+.-++.+.|++++|...
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444555444455666666666666666655544 56666665554211 1223334445556666666666666
Q ss_pred HHHHHH
Q 006071 472 LDSMIE 477 (662)
Q Consensus 472 ~~~~~~ 477 (662)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=2.1 Score=32.75 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=66.8
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHH
Q 006071 139 RGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKL 218 (662)
Q Consensus 139 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 218 (662)
.|..++..++..+.... .+..-||-+|--....-+-+...++++.+-+. + |. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHHHH
Confidence 45556666666655543 23444455554444444555555555444332 1 11 223344333333
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006071 219 FAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (662)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 297 (662)
+-.+-. +....+..+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333211 3333444455555556666555555554322 255555566666666666666666666666655543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.15 E-value=1.5 Score=33.60 Aligned_cols=71 Identities=7% Similarity=0.022 Sum_probs=41.9
Q ss_pred CcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 482 PASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
|+..+--.+..++.++.+ ..+++.+++.+.+.++.-....+-.+.-++.+.|++++|.++.+.+++ ..|++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 444444444555555543 345666666666655433445555566667777777777777777766 56653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.58 Score=37.50 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
.-..+..||...|++++|+.+++.+....-.|..+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 33446667777777777777666554333344433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.82 E-value=1.1 Score=50.20 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENL----DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|..++..+.+.|.++.+.++-+.+++.....+. ..|..++.++...|++++|...+-.+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 445555566666666666666665554221111 2456666666667777776666655544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.58 E-value=1.4 Score=45.79 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=45.7
Q ss_pred HhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
|...|+++-|+.+.++++... +.+...|..|+.+|...|+++.|+=.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446799999999999999875 4568999999999999999999999998875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=2.9 Score=32.46 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=44.5
Q ss_pred CCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 481 SPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
.|+..+-..+..++.++.. ..+++.+++.+...++.-.......+.-++.+.|++++|.++.+.+++ ..|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 3455554455555555543 345666777766655443455555567777777777777777777776 66664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.83 E-value=3.2 Score=46.35 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT----RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMI 203 (662)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (662)
-|..++..+.+.+.++.+.++-...++...+.+ ...|..+.+.+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 356666667777777777766655544321111 12456666777777777777777766665422 344445555
Q ss_pred HHHhhc------------CChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHH-HHHHHh
Q 006071 204 NGYNRF------------KKMDEAEKLFAEMKEKN--IEPTVISYTTMIKGYVAVERADDALR-IFDEMK 258 (662)
Q Consensus 204 ~~~~~~------------g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 258 (662)
..++.. |..++..+++..-.+.. +...+.-|..|=.-+...|++.+|-. +|+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 444443 44556666665433211 11112234555555667777766554 444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.62 E-value=3.3 Score=31.72 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=45.9
Q ss_pred HHHHHHhccC---CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 556 SLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 556 ~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+++++.+.. +..+++.+++..+..++......+..++-++++.|++++|.++++.+++..+
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3666776654 5567888888888766433445555688999999999999999999887643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=1.7 Score=41.53 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCcCHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS-----EGIEPTRHTYN 165 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 165 (662)
+...++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34455666777788888877777776643 45677777888888888888888877776643 37777766543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.49 E-value=16 Score=35.49 Aligned_cols=184 Identities=11% Similarity=0.141 Sum_probs=92.4
Q ss_pred CChhHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHH----Hhc
Q 006071 394 GQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESY----LRK 462 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~ 462 (662)
++++.|.+.+..+.+.. .........++..|...++++...+.+..+... |.. ......++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 66777877766555421 455677788888888888888887777766553 322 22222333222 222
Q ss_pred CChHHH--HHHHHHHHH--cC-CCC---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 006071 463 GEPADA--KTALDSMIE--DG-HSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKEN---LDLVAKILEAL 529 (662)
Q Consensus 463 ~~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 529 (662)
...+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222211 111111100 01 000 1112234555666677777777777776543 22211 23444556666
Q ss_pred HhCCCHHHHHHHHHHHHh----CCCCCCH-----HHHHHHHhccCCHHHHHHHHHHHhc
Q 006071 530 LMRGHVEEALGRIDLMMQ----SGSVPNF-----DSLLSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
...+++..|..+++++.. ....|+. ...+..+...+++.+|.+.|..+.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 677777777766666542 1122221 1122333345666666666554444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=1.7 Score=41.61 Aligned_cols=55 Identities=9% Similarity=0.015 Sum_probs=31.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 440 (662)
++..+...|++.++...+..+....|.+...+..++.++...|+..+|++.|+.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455566666665555555555555556666666666666666666555554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.65 E-value=14 Score=32.48 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=62.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHH
Q 006071 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (662)
.+.+.|+++++++....-++..+. |...-..++..||-.|++++|.+-++...+ ..|+.......|.. .=.|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~---lI~aE~ 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRH---LVKAAQ 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHH---HHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHH---HHHHHH
Confidence 345667777777777776666555 666666677777777777777776666665 55554433333321 111222
Q ss_pred HHHHHhcCCCCC-----ChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 006071 573 LLDFCLGRDCII-----DLASYEKVLDALL--AAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 615 (662)
.-+....-.-.| .+.....++.++. ..|+.++|.+.-.++.+.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222211111 1222234444443 357777777776666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.60 E-value=8.5 Score=29.93 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=47.6
Q ss_pred HHHHHHhccC---CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 556 SLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 556 ~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+++++.+.. +..+++.+++..+..++.......+.++-++++.|++++|.++++.+++..+
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4677777654 5567899999888865544444455699999999999999999999998754
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.19 E-value=21 Score=33.90 Aligned_cols=164 Identities=6% Similarity=-0.043 Sum_probs=88.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC--C---CCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhH---
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG--V---LDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAY--- 452 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--- 452 (662)
....+...|.+.|+.++..+++......- . ........++..+.... ..+.-.++.....+..- .+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44566677778888888777777654432 1 12334566777776643 33333344333332100 011122
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHH
Q 006071 453 ---ICLIESYLRKGEPADAKTALDSMIEDGHSPAS-----SLFRSVMESLFEDGRVQTASRVMKSMVEK--GVKENLDLV 522 (662)
Q Consensus 453 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ 522 (662)
.-++..|...|++.+|.+++.++.+.--+.|. ..+..-+..|...|++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25677777888888887777777753212221 12333344566777888887777776544 222333322
Q ss_pred H----HHHHHHH-hCCCHHHHHHHHHHHH
Q 006071 523 A----KILEALL-MRGHVEEALGRIDLMM 546 (662)
Q Consensus 523 ~----~l~~~~~-~~g~~~~A~~~~~~~~ 546 (662)
. .-+..+. ..++|..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2 2223345 6777777776655543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.63 E-value=30 Score=35.24 Aligned_cols=124 Identities=8% Similarity=0.062 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (662)
.|.....++ +.|++..+..+...+....+. ....|..+.... ......+....+.+-.. .+.....-...+..+.
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHH
Confidence 344444433 567777777766555433121 112333222211 22244544444444321 1111222344455666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 006071 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERY 296 (662)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 296 (662)
+.+++...+.++.. .+.+...-.....+....|+..+|......+-..+
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 67777766554432 13344444455666677787776766666655544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.45 E-value=7.2 Score=28.05 Aligned_cols=47 Identities=9% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+..+-++.+....+.|++....+.+.+|.+.+++..|+++++.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555566677777777777777777777777777766655
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.30 E-value=8.3 Score=27.52 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=31.2
Q ss_pred HhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
+...|+|++|..+.+ ..+.|+.+.| ++-+-.+.|-.+++...+.++-.++
T Consensus 49 LmNrG~Yq~Al~l~~----~~c~pdlepw--~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAH----GNPWPALEPW--FALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGT----TCCCGGGHHH--HHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcC----CCCCchHHHH--HHHHHHhcccHHHHHHHHHHHHhCC
Confidence 456677777776655 2334555555 3445567777777777776666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.08 E-value=11 Score=27.16 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555555555555666666666666666666666666665555
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.03 E-value=22 Score=31.29 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (662)
...+.|++++++..+..-++.. +-|...-..++..++-.|+|++|..-++...+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3456677777777777666543 33455555666677777777777777777766644
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.18 E-value=35 Score=32.35 Aligned_cols=221 Identities=8% Similarity=-0.048 Sum_probs=116.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-C-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHhHH---
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKG-V-L----DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYI--- 453 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 453 (662)
.++..|...|++.+|..++..+.+.- . . -..++..-++.|...+++.++...+...... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 56788899999999999998887753 1 1 1235666778889999999999999877642 2323443322
Q ss_pred -HHHHHHH-hcCChHHHHHHHHHHHHcCCC---Cc---HHhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHH
Q 006071 454 -CLIESYL-RKGEPADAKTALDSMIEDGHS---PA---SSLFRSVMESLFEDGRVQTASRVMK-SMVEKGVKENLDLVAK 524 (662)
Q Consensus 454 -~l~~~~~-~~~~~~~a~~~~~~~~~~~~~---~~---~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ 524 (662)
.-...+. ..+++..|...|-+..+.--. |. ...| .++.+.. .++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY-lvL~aLl-~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY-MLLCKIM-LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHHHH-TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH-HHHHHHH-cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 2233455 789999998887776532101 11 1122 2222222 233222222222 2111113344555566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF--DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 602 (662)
++.++ ..+++.+..++++.... .+..|. ...+..+.+ .-.+.++ .+.+. +-+......++..+.- ..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~-~Ir~~~L---~~i~~---pYsrIsl~~iA~~l~l--s~ 330 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYD-TMLEQNL---CRIIE---PYSRVQVAHVAESIQL--PM 330 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHH-HHHHHHH---HHHHT---TCSEEEHHHHHHHHTC--CH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHH-HHHHHHH---HHHhH---hhceeeHHHHHHHHCc--CH
Confidence 66654 55677666665554322 122231 111111111 0011111 11221 1234455556655533 67
Q ss_pred HHHHHHHHHHHHcCCC
Q 006071 603 LNAYSILFKIMEKGGV 618 (662)
Q Consensus 603 ~~A~~~~~~~~~~~~~ 618 (662)
+++...+-+++..|..
T Consensus 331 ~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 331 PQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCe
Confidence 8899999998877553
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.54 E-value=10 Score=36.81 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHH--
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEK---GVKENLDLV-- 522 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~-- 522 (662)
.++..+...|.+.|+++.|.+.+.++...-..+ -...+...+..+...+++..+...+.++... +..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 466778888888899998988888887542222 2345666777788888888888888887654 222222211
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 523 AKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..-+..+...+++.+|-..|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122223456778777777666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.43 E-value=50 Score=33.65 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC
Q 006071 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG 140 (662)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 140 (662)
..+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+.....++..+.+.|
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 334444445555544443322 11234444444444445555544444444443333 122333344444444333
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.35 E-value=5.8 Score=33.05 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 567 TIAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
..++..+|..+...+.... ...|...+..|...|++.+|.++++..+.....|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666666666555544 4445555566666666666666666666655443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.56 E-value=16 Score=27.89 Aligned_cols=60 Identities=7% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
+..+-++.+....+.|++......+.+|.+.+|+..|+++|+.+..+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555555555567788888888888888888888888888877665 2222444554543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 662 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 55/409 (13%), Positives = 122/409 (29%), Gaps = 36/409 (8%)
Query: 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSL-KLETAIRFFEDMKSRGISLD 195
+ G + A+R+ ++ EP ++L +L+ + F I +
Sbjct: 10 YQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFST----LAIKQN 63
Query: 196 ---VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252
Y+ + N Y ++ EA + + + A +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312
++ + + +++ ++ + +V LG
Sbjct: 124 YVSALQYNPDLYCVRSDLG-----NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 313 C-KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR 371
G + A + + L P Y L +A ++DRA+ + +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---- 233
Query: 372 PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431
A + + G A +R+ ++ P A+ NL ++G+
Sbjct: 234 -----PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491
A + R P AD+ L +G +A +E A++ +
Sbjct: 289 EAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN-LA 346
Query: 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540
L + G++Q A KE + + +A G+ + +
Sbjct: 347 SVLQQQGKLQEA--------LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 6e-05
Identities = 47/402 (11%), Positives = 121/402 (30%), Gaps = 20/402 (4%)
Query: 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGV 87
+ + A + E A + + R + L + I + +L+ + +
Sbjct: 7 HREYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFS----TLAI 60
Query: 88 QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147
+ + + E + + + + + + M
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYN 207
+ + P + L +L + V ++ + +N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 208 RFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267
++ A F + + + +Y + D A+ + S +AV
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238
Query: 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327
+ L + G + R +E + P + L + G + A D
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387
+R PT A L + + A++L K +E + P+ A++++ +
Sbjct: 297 ALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----AAAHSNLA 346
Query: 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429
L G+ +A + +++ ++ A++N+ + +
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 662 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.21 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.06 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.96 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.8 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.69 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.08 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.94 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.92 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.76 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.84 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.67 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.8e-22 Score=197.38 Aligned_cols=384 Identities=15% Similarity=0.098 Sum_probs=269.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+.....+.|++++|++.|+.+++.. |.++.++..++.++.+.|++++|...|+++.+..+. +..++..+...|...|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 4556778899999999999998886 778888999999999999999999999988876544 6778888888899999
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
++++|...+....+.. +.+...+..........+....+............ ................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHH
Confidence 9999999998888764 34455555555556666666666666655544432 334444445555666777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
...... +.+...+..+...+...|++++|...++...... +.+..+|..+...+...|++++|...++.....+ +.+
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 776653 2356777777788888888888888888877643 3355677778888888888888888888776653 445
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 266 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
...+..+...+...|++++|...++++++. .|.+..++..+...+...|++++|...++...... +.+...+..+..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 666777777777888888888888877764 56677777777777777777777777777766643 455566666666
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.+...|++++|+..|++.++.. | .+..++..+..++...|++++|...|+++.+..|.++.++..++.+|.
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~----p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVF----P-----EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC----T-----TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6667777777777766664321 1 123345555555666666666666666666555555666666665555
Q ss_pred hcCC
Q 006071 426 KEGN 429 (662)
Q Consensus 426 ~~~~ 429 (662)
+.||
T Consensus 385 ~~~D 388 (388)
T d1w3ba_ 385 EMQD 388 (388)
T ss_dssp HTCC
T ss_pred HcCC
Confidence 5543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.3e-22 Score=194.76 Aligned_cols=379 Identities=16% Similarity=0.086 Sum_probs=236.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 006071 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGH 317 (662)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (662)
...+.+.|++++|.+.++++.+.. +-+...+..+..++...|++++|...++++++. .|.+..++..++.++...|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhcc
Confidence 344455566666666665555432 234455555555566666666666666665553 44455566666666666666
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChh
Q 006071 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTG 397 (662)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 397 (662)
+++|...+....... +.+..............+....+........... .................+...
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 152 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---------PDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHTTSCHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc---------cccccccccccccccccchhh
Confidence 666666666655543 2233333333333333333333333333332111 112223334444555666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
.+...+.......+.+..++..+...+...|++++|...++...+.. +.+...|..+...+...|++++|...+++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 231 (388)
T d1w3ba_ 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred hhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence 77777777666666777777777777777777777777777776643 22566777777777777777777777777766
Q ss_pred cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----
Q 006071 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---- 553 (662)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---- 553 (662)
.+ +.+...+..+...+.+.|++++|+..|+++++..+. +...+..++.++...|++++|++.++.... ..|+
T Consensus 232 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 307 (388)
T d1w3ba_ 232 LS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADS 307 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred Hh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchh
Confidence 43 234455666667777778888888888877776554 566677777778888888888887777765 2232
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
...++.++...|++++|+..++++++..|. +...+..++.+|.+.|++++|++.+++.++.. +.+...+..|+.+|.+
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 234556667778888888888888776533 45566678888888888888888888877653 3456677778777777
Q ss_pred cCC
Q 006071 634 EGN 636 (662)
Q Consensus 634 ~g~ 636 (662)
.|+
T Consensus 386 ~~D 388 (388)
T d1w3ba_ 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred cCC
Confidence 664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.7e-14 Score=134.53 Aligned_cols=253 Identities=13% Similarity=0.086 Sum_probs=200.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
.-.....+...|++++|...|+.+.+..|.++.+|..++.++...|++++|...+.++.+..+ -+...|..++.+|...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence 334566788999999999999999999999999999999999999999999999999988643 3678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHh----------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPASSL----------------FRSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKI 525 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 525 (662)
|++++|...++++.... |+... ....+..+...+.+.++...+.++++..+. ++...+..+
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 99999999999988643 22111 111122344556788899999998877543 467788889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCC
Q 006071 526 LEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGK 601 (662)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 601 (662)
...+...|++++|+..+++... ..|+ +..++.++...|++++|++.++++++..+ ..+..|..++.+|.+.|+
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCC
Confidence 9999999999999999999887 3444 34567788899999999999999998753 346677789999999999
Q ss_pred HHHHHHHHHHHHHcCC----------CCcHhhHHHHHHHHHhcCCcchhH
Q 006071 602 TLNAYSILFKIMEKGG----------VTDWKSSDKLIAGLNQEGNTKQAD 641 (662)
Q Consensus 602 ~~~A~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a~ 641 (662)
+++|++.|++.++... ......|..+..++...|+.+.+.
T Consensus 256 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999886311 112223455777777778877663
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.9e-13 Score=127.36 Aligned_cols=229 Identities=11% Similarity=0.020 Sum_probs=157.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
......+...|++++|+..|+.+++.+ |.++.+|..++.++...|++++|...|++..+..+. +...+..+...|..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccc
Confidence 345557889999999999999999987 788999999999999999999999999998876654 78889999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHh----------------HHHHHHHHHHcCChhHHHHHHHHHHhCCC-CcCHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKS----------------YDALFKLILRRGRYMMAKRYFNKMLSEGI-EPTRHTYNV 166 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 166 (662)
.|++++|.+.++.+.... |+... ....+..+...+.+.+|...|.+.++..+ ..+...+..
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999987743 22111 11112223334455666666666554322 224455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006071 167 MLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (662)
Q Consensus 167 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (662)
+...+...|++++|...++........ +...|..+..++...|++++|.+.|+...+.. +-+..+|..+..+|.+.|+
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCC
Confidence 566666666777777666666654322 45666666666666667766666666665532 2244556666666666666
Q ss_pred HHHHHHHHHHHhh
Q 006071 247 ADDALRIFDEMKS 259 (662)
Q Consensus 247 ~~~a~~~~~~~~~ 259 (662)
+++|+..|++.++
T Consensus 256 ~~~A~~~~~~al~ 268 (323)
T d1fcha_ 256 HREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.5e-10 Score=106.93 Aligned_cols=211 Identities=9% Similarity=0.008 Sum_probs=170.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
.++.+...+.+.+..++|+..++.+++..|.+..+|+....++...| ++++|+..++.+.+.+.. +..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 45566667788899999999999999999999999999999998876 589999999999886533 7899999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH------ 534 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 534 (662)
+.|++++|+..++++++.. +-+...|..+...+...|++++|+..++.+++.++. +...|+.+..++...+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 9999999999999999754 345788999999999999999999999999998877 77788888777776665
Q ss_pred HHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHh
Q 006071 535 VEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID-LASYEKVLDALLA 598 (662)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 598 (662)
+++|++.+.+.++ ..|+. ..+..++. ....+++.+.++.+++..+.+. ...+..++..|..
T Consensus 202 ~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 202 LEREVQYTLEMIK--LVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHH--hCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 6889999988887 55552 22334443 4456888888888877655543 4445566666644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=4.7e-10 Score=106.72 Aligned_cols=293 Identities=11% Similarity=0.019 Sum_probs=175.2
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CC----CHHHHH
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VL----DPVAFN 418 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~ 418 (662)
..+...|++++|+.++++.++.. +..........+..+..++...|++++|...++...... .+ ...++.
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 34445555555555555554322 110000011234445555666666666666666655432 11 123455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhh----CCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CcHHhH
Q 006071 419 NLIRGHSKEGNPDSAFEIVKIMGR----RGVPR---DADAYICLIESYLRKGEPADAKTALDSMIEDGHS----PASSLF 487 (662)
Q Consensus 419 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 487 (662)
.+...+...|++..+...+..... ..... ....+..+...+...|+++.+...+......... .....+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 566677777888888777766542 11111 1234556677788888888888888877754221 122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------HH
Q 006071 488 RSVMESLFEDGRVQTASRVMKSMVEK--GVKEN----LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN------FD 555 (662)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~ 555 (662)
......+...|++..+...+...... ..... ...+......+...|++++|...+++........+ ..
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 44555667788888888888776654 11111 22345566677888899999888887765322222 12
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC----cHh
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGR----DCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEK----GGVT----DWK 622 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~ 622 (662)
.++.++...|++++|...+++++.. +..+ ....+..++.+|.+.|++++|.+.+++.+.. +... ...
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~ 335 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 335 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHH
Confidence 2556677889999999998877643 1112 2455677899999999999999999987653 2111 223
Q ss_pred hHHHHHHHHHhcCCcchhH
Q 006071 623 SSDKLIAGLNQEGNTKQAD 641 (662)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~ 641 (662)
.+..++..+...++.++++
T Consensus 336 ~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 336 AMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhcCCChHHH
Confidence 3445667777788888773
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=5.6e-10 Score=103.07 Aligned_cols=220 Identities=10% Similarity=0.062 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC--------------ChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG--------------KLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (662)
.+.+..+|++++... |.++..|...++.+...+ ..++|..+|++.++...+.+...|...+..+
T Consensus 32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456777899988875 778888887776554322 3466777777776544444666777777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHhcCCHHHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG-FFLSLKLETA 180 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a 180 (662)
.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|++..+.++. +...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHH
Confidence 777777777777777776442233446777777777777777777777777665332 33333333322 2334677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEPT--VISYTTMIKGYVAVERADDALRIFDEM 257 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (662)
..+|+.+.+. .+.+...|...+..+...|+++.|..+|++..... ..|. ...|...+..-...|+.+.+..+++++
T Consensus 189 ~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 189 FKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777765 23356677777777777777777777777766542 2222 235666666666667777777777666
Q ss_pred hh
Q 006071 258 KS 259 (662)
Q Consensus 258 ~~ 259 (662)
.+
T Consensus 268 ~~ 269 (308)
T d2onda1 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.3e-09 Score=97.73 Aligned_cols=210 Identities=9% Similarity=0.062 Sum_probs=162.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
.+..++.+.+.+++|++.++.+++.+ |.+..+|+....++...| ++++|...++...+..+. +..+|..+...+.+
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHh
Confidence 44457778889999999999999987 889999999999988876 589999999998887655 78899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC------H
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK------L 177 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~ 177 (662)
.|++++|+..++.+.+.. +.+..+|..+...+...|++++|++.|+++++.++ .+...|+.+...+.+.+. +
T Consensus 125 l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhhh
Confidence 999999999999999865 46788999999999999999999999999988643 366677766666555544 5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHH
Q 006071 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYTTMIKGY 241 (662)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 241 (662)
++|+..+..+.+..+ .+...|+.+...+... ..+++.+.++...+.... .+...+..++..|
T Consensus 203 ~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 203 EREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 778888888877643 3677777776665544 456777777776653211 2334444555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.5e-09 Score=101.57 Aligned_cols=262 Identities=15% Similarity=0.085 Sum_probs=189.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHH
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLD-----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICL 455 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 455 (662)
....+...|++++|+.++++.....+.+ ..++..+..++...|++++|...++...+. +..+ ....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4456778999999999999998877543 246777889999999999999999987652 1111 12456667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCC--c-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHH
Q 006071 456 IESYLRKGEPADAKTALDSMIED----GHSP--A-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGV----KENLDLVAK 524 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~ 524 (662)
...+...|++..+...+...... +... . ...+..+...+...|+++.+...+........ ......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 78889999999999998887632 1111 1 23445566778899999999999999887522 223455566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh--CCCCCC--H-----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCC---hhhHHHH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQ--SGSVPN--F-----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID---LASYEKV 592 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~--~-----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 592 (662)
....+...|++.++...+.+... ...... . ......+...|++++|...+++++...+..+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 77788899999999988877664 111111 1 1234455678999999999998887654443 3445568
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 593 LDALLAAGKTLNAYSILFKIMEK----GGVT-DWKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
+.++...|++++|.+.+++.... +..+ ....+..+..+|...|++++|....+..
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999997742 2222 3446667889999999999996554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=2.1e-09 Score=99.08 Aligned_cols=218 Identities=9% Similarity=0.047 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--------------CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE--------------GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
+.+..+|+++....+.++..|...+..+... +..++|..+++...+...+.+...|..++..+.+.
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4566778888887788888887766654332 34578888999988754555777888889999999
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCHHHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGR 541 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 541 (662)
|+++.|..+++++++........+|...+..+.+.|+++.|.++|+.+++.++. +...|...+.. +...|+.+.|..+
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHH
Confidence 999999999999986433223456888888889999999999999999887655 34444444433 3456899999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 542 IDLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII---DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 542 ~~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
++.++.. +..|+ +..++..+...|+.+.|+.+|++++...+.+ ....|...+..-...|+.+.+.++.+++.+.
T Consensus 192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998872 22332 3456667778999999999999998875322 2345666666666789999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=4.2e-09 Score=94.56 Aligned_cols=218 Identities=9% Similarity=-0.144 Sum_probs=148.5
Q ss_pred hhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGV----LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
.+.++..++++..... ....++..++.+|.+.|++++|...|+...+..+ -++.+|..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555666665442 2334777888999999999999999999988653 3788999999999999999999999
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 006071 472 LDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551 (662)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (662)
|+++++.. +-+..++..+...+...|++++|...++..++..+. +......+..++...+..+.+..+..........
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 99999754 223567778888899999999999999999887655 4554444555566666666665555555553333
Q ss_pred CCHHHHHHHHhcc----CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 552 PNFDSLLSVLSEK----GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 552 p~~~~~~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
+....+...+... +..+.+...+....... +.....|..++..|...|++++|++.+++.+...+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 172 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 3323333333222 22233333222222111 11134566789999999999999999999887643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=3.8e-11 Score=112.90 Aligned_cols=245 Identities=9% Similarity=-0.105 Sum_probs=147.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----------cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----------EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
...+..++|+.+++.+.+..|.+...|+.....+.. .|.+++|+.+++.+.+.+ +.+...|..+..++.
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 344455899999999999988888887665444333 334778999999888764 337778888877777
Q ss_pred hcCC--hHHHHHHHHHHHHcCCCCcHHhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 006071 461 RKGE--PADAKTALDSMIEDGHSPASSLFR-SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (662)
Q Consensus 461 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (662)
..++ +++|...+.++.+... ++...+. .....+...|.+++|+..++.+++.++. +...|..+..++...|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHH
Confidence 7654 7899999999987542 3344443 4446677789999999999999888776 78888888888888888766
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 538 A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
|...++.... ..|....+...+...+..+++...+.+++...+.. ...+..++..+...|++.+|++.+.+.....
T Consensus 197 A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 272 (334)
T d1dcea1 197 SGPQGRLPEN--VLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP-LFRCELSVEKSTVLQSELESCKELQELEPEN- 272 (334)
T ss_dssp SSSCCSSCHH--HHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC-SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHhHH--hHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 5443332222 11121222223333344444444444444443221 1122233444444455555555554444332
Q ss_pred CCcHhhHHHHHHHHHhcCCcchhHH
Q 006071 618 VTDWKSSDKLIAGLNQEGNTKQADI 642 (662)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (662)
+.....+..++.+|...|+.++|..
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1233334444445555555555533
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=1.8e-10 Score=108.23 Aligned_cols=273 Identities=7% Similarity=-0.029 Sum_probs=185.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh----------cCChHHHHHHHHhcccCCCCCCHHHHHH
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGR----------VGKLNHARCILLDMPKKGVQWDEDMFEV 96 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (662)
+.........++|+++++.+++.+ |.+..+|+....++.. .|.+.+|..+++.+.+..+. +...|..
T Consensus 36 ~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~ 112 (334)
T d1dcea1 36 FQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 112 (334)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 333344455689999999999887 6777777655444333 33467888888888776544 7777877
Q ss_pred HHHHHHhcCC--hhHHHHHHHHHHHcCCCcCHHhHH-HHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006071 97 LIESYGKKGI--VQESVKIFDIMKQLGVERSVKSYD-ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (662)
Q Consensus 97 l~~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 173 (662)
+..++...++ +++|...+..+.+.. +++...+. .....+...+.+++|+..++++++.++ -+...|..+...+..
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 7777766654 788888888887754 34555554 344666677889999998888877643 367778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 006071 174 SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRI 253 (662)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (662)
.|++++|...+....+. .|+ ...+...+...+..+++...+....... +++...+..+...+...++..+|...
T Consensus 191 ~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 88887766555443332 111 1123333455566777777777776653 34555666677777778888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 006071 254 FDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (662)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (662)
+.+..... +.+..++..+..++...|++++|.+.++.+.+. .|.+...|..+...+.
T Consensus 265 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 265 LQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 88777543 334566777778888888888888888888774 6655666666654443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=8.2e-10 Score=99.39 Aligned_cols=196 Identities=14% Similarity=-0.054 Sum_probs=137.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
.++..+..+|...|++++|...|++.++..|.++.+|..+..++...|++++|...|+.+.+.... +..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 456677888999999999999999999999999999999999999999999999999999986533 5678889999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----H
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV----E 536 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~ 536 (662)
..|++++|...+++.++.. +.+......+...+...+..+.+..+..........+. .+. ++..+...... +
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHHH
Confidence 9999999999999998754 22333333344445556665666555555555433321 222 22222222222 2
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Q 006071 537 EALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 537 ~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (662)
.+...+..... ..|+ +..++..+...|++++|...+++++...|.
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 22222111111 1222 223667788899999999999999987654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=4.5e-07 Score=75.95 Aligned_cols=139 Identities=8% Similarity=-0.094 Sum_probs=81.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 006071 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (662)
...+...|+++.|++.|.++ .+|+..++..+...+...|++++|++.|++.++.++. ....|..++.++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 44555667777777666653 2345556666666677777777777777777766555 556666677777777777
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 536 EEALGRIDLMMQSGS-VPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCII-DLASYEKVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 536 ~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
++|++.|++.+.... .+... +...| ..... ....+..++.++.+.|++++|.+.+.+..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~-----~~~~~--------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLID-----YKILG--------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE-----CGGGT--------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHH-----HHHhh--------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777766666654110 00000 00000 00000 12344567888888888888888888877
Q ss_pred HcCCC
Q 006071 614 EKGGV 618 (662)
Q Consensus 614 ~~~~~ 618 (662)
.....
T Consensus 148 ~~~~~ 152 (192)
T d1hh8a_ 148 SMKSE 152 (192)
T ss_dssp TTCCS
T ss_pred hcCCC
Confidence 65443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=3.8e-07 Score=82.74 Aligned_cols=198 Identities=12% Similarity=0.003 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCcHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDSMIED----GH-SPASS 485 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 485 (662)
.|......|...+++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|...+++..+. |. .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 3555677888999999999999887652 1111 2367888899999999999999999887642 11 11133
Q ss_pred hHHHHHHHHH-hcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCH----
Q 006071 486 LFRSVMESLF-EDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGS-VPNF---- 554 (662)
Q Consensus 486 ~~~~l~~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~---- 554 (662)
++..+...|. ..|++++|++.++++.+. +..+ ...++..++..+...|++++|++.++++..... .+..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 4555555564 469999999999988754 1111 134567789999999999999999999887322 2211
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 006071 555 ----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID----LASYEKVLDALLA--AGKTLNAYSILFKIM 613 (662)
Q Consensus 555 ----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 613 (662)
...+..+...|+++.|...++++.+..+... ......++.++.. .+++.+|+..++++.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1223344568999999999998888754322 1223345555444 346778887776533
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=3.6e-07 Score=69.31 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=62.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
...+...|++++|+..|+.+++.. |.++.+|..+..++...|++++|+..++...+.++. ++..|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 345566677777777777777665 666677777777777777777777777776665543 66666667777777777
Q ss_pred hhHHHHHHHHHHHc
Q 006071 107 VQESVKIFDIMKQL 120 (662)
Q Consensus 107 ~~~A~~~~~~~~~~ 120 (662)
+++|+..|+...+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=1.2e-06 Score=79.37 Aligned_cols=190 Identities=13% Similarity=0.052 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHH
Q 006071 452 YICLIESYLRKGEPADAKTALDSMIED----GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-N----LDL 521 (662)
Q Consensus 452 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~ 521 (662)
|......|...|++++|...|.++.+. +-.++ ..++..+...|.+.|++++|.+.+++..+..... + ...
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 334467788999999999999988753 21122 3577888889999999999999999887651111 1 344
Q ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHh----CCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCC------h
Q 006071 522 VAKILEALLM-RGHVEEALGRIDLMMQ----SGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID------L 586 (662)
Q Consensus 522 ~~~l~~~~~~-~g~~~~A~~~~~~~~~----~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~ 586 (662)
+..++..|.. .|++++|++.+++..+ .+..+. ...++..+...|++++|+.++++++...+... .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 5667767754 6999999999998765 121221 23467778899999999999999888654433 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C---cHhhHHHHHHHHHhc--CCcchhH
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-T---DWKSSDKLIAGLNQE--GNTKQAD 641 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~--g~~~~a~ 641 (662)
..+...+..+...|++..|.+.+++..+.... + .......|+.++... +++++|.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai 260 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHC 260 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33455677778899999999999998765321 1 223344566665542 2345553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=3.2e-06 Score=70.58 Aligned_cols=123 Identities=10% Similarity=-0.069 Sum_probs=77.5
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCCh
Q 006071 63 IEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRY 142 (662)
Q Consensus 63 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 142 (662)
...+...|+++.|++.|.++.. +++.+|..+..+|...|++++|++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQD----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 4445667777777777776532 466677777777777777777777777777655 35566777777777777777
Q ss_pred hHHHHHHHHHHhCCCC--------------cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 143 MMAKRYFNKMLSEGIE--------------PT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 143 ~~A~~~~~~~~~~~~~--------------~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
++|+..|++.+..... ++ ..++..+..++.+.|++++|.+.++...+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777777776543110 00 123334444555666666666666666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.8e-06 Score=65.26 Aligned_cols=88 Identities=17% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 006071 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (662)
.+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..+..+++.++. +...|..++.++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHH
Confidence 3444444444444444444322 122333444444444444444444444444444333 33444444444444444444
Q ss_pred HHHHHHHHHh
Q 006071 538 ALGRIDLMMQ 547 (662)
Q Consensus 538 A~~~~~~~~~ 547 (662)
|+..+++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.1e-06 Score=71.18 Aligned_cols=92 Identities=11% Similarity=-0.044 Sum_probs=65.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
.+.+.+.|++++|+..|+.+++.+ |.+...|..+..++...|++++|...|+..++..+. +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 445667777777777777777776 667777777777777777777777777777665443 56677777777777777
Q ss_pred hhHHHHHHHHHHHcC
Q 006071 107 VQESVKIFDIMKQLG 121 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g 121 (662)
+++|...|++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777777776653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.7e-06 Score=69.96 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=53.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCH
Q 006071 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKT 567 (662)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~ 567 (662)
..|.+.|++++|+..|+++++.++. +...|..+..+|...|++++|++.|+++++ ..|+ +..++.++...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcCCH
Confidence 4455666666666666666666554 566666666666666666666666666665 3344 22344555566666
Q ss_pred HHHHHHHHHHhcCC
Q 006071 568 IAAVKLLDFCLGRD 581 (662)
Q Consensus 568 ~~A~~~~~~~~~~~ 581 (662)
++|...+++++...
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=3.8e-07 Score=77.69 Aligned_cols=99 Identities=8% Similarity=0.006 Sum_probs=82.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006071 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (662)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (662)
|+...+......|.+.|++++|+..|.++++.. +.+...|..+..+|.+.|++++|+..|+.+++..+. +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677777788888999999999999999888754 345677888888889999999999999998877655 677788899
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 006071 527 EALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+|...|++++|+..|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999888776
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.42 E-value=0.00048 Score=60.63 Aligned_cols=61 Identities=5% Similarity=-0.071 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK----KGIVQESVKIFDIMKQ 119 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 119 (662)
|.++..+...+...+++.+|.++|++..+.| +...+..|...|.. ..+...|...+.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 3444444444555555555555555554432 33334344444433 3344455555555444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.40 E-value=1.1e-06 Score=65.96 Aligned_cols=91 Identities=12% Similarity=-0.093 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
.-....+.+.|++++|+..|+.+++.. |.++.+|..++.++.+.|++++|...|++..+..+. +..++..+...|..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHH
Confidence 334445556666666666666666665 556666666666666666666666666666655433 55666666666666
Q ss_pred cCChhHHHHHHHHH
Q 006071 104 KGIVQESVKIFDIM 117 (662)
Q Consensus 104 ~g~~~~A~~~~~~~ 117 (662)
.|++++|.+.|++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=2.7e-06 Score=72.12 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=71.1
Q ss_pred CccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 006071 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (662)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (662)
|+...+......+.+.|++++|+..|.+++...|.++.+|..++.+|.+.|++++|+..|+.+.+..+ -+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHHH
Confidence 34444555666777777777777777777777777777777777777777777777777777776532 25667777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 006071 458 SYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~ 477 (662)
+|...|++++|+..|+++.+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.31 E-value=3.3e-06 Score=63.18 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
+......+.+.|++++|...|+++....|.++.+|..+..++.+.|++++|+..++.+.+.. +.+...|..+..+|...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 34456667788888888888888888888888888888888888888888888888888764 33678888888888888
Q ss_pred CChHHHHHHHHHHH
Q 006071 463 GEPADAKTALDSMI 476 (662)
Q Consensus 463 ~~~~~a~~~~~~~~ 476 (662)
|++++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888887753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.29 E-value=0.00098 Score=58.56 Aligned_cols=224 Identities=13% Similarity=0.072 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCcCHHHHH
Q 006071 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILR----RGRYMMAKRYFNKMLSEGIEPTRHTYN 165 (662)
Q Consensus 90 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 165 (662)
|+..+..+...+...+++++|++.|++..+.| +..++..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45677777778888899999999999998865 55666667777765 567888888888887664 223333
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----hcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 166 VMLWGFF----LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYN----RFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 166 ~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
.+...+. ...+.+.|...++.....|.. .....+...+. .......+...+......+ +...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 3333332 246778888888888776542 22222222222 2445666777777666543 66667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 238 IKGYVA----VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 238 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
...+.. ..+...+..+++...+.| +..+...+...+.. ..+++.|..+|....+.| ++.....|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~LG 221 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLG 221 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc----CHHHHHHHH
Confidence 776664 455667777777766644 45555555555543 457777888887777754 455666666
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCC
Q 006071 310 GVQCK----SGHLNAAADVLKAMIRLS 332 (662)
Q Consensus 310 ~~~~~----~g~~~~a~~~~~~~~~~~ 332 (662)
.+|.. ..+.+.|.+.|+.....|
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 66654 336667777777766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=4.4e-06 Score=63.24 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhhCCCCCC-HHhHHHHHHHH
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP---DSAFEIVKIMGRRGVPRD-ADAYICLIESY 459 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 459 (662)
..++..+...+++++|.+.|++....+|.++.++..+..++.+.++. ++|+.+++.+...+..|+ ..+|..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34566677778888888888888888888888888888888765444 457888888776543333 23667777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHH
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASS 485 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 485 (662)
.+.|++++|+..|+++++. .|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 8888888888888888764 35543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4.4e-06 Score=63.21 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=68.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHhcccCCCCCC-HHHHHHHHHH
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK---LNHARCILLDMPKKGVQWD-EDMFEVLIES 100 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 100 (662)
-+++.+...+++++|.+.|+.++..+ |.++.++..++.++.+.++ +.+|+.+|+++...++.++ ..++..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 35566667778888888888888877 7788888888888776444 4457888888776544332 2466777778
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 006071 101 YGKKGIVQESVKIFDIMKQLG 121 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g 121 (662)
|.+.|++++|++.|+++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 888888888888888887753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2.7e-07 Score=90.65 Aligned_cols=112 Identities=9% Similarity=-0.042 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 006071 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (662)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 596 (662)
...+..+...+.+.|+.++|...+++... ..|. ...+++.+...|++++|+.+++++++..| .+...|+.++.++
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILA 196 (497)
T ss_dssp -----------------------CCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 33445555556666666666655544433 1111 22355555566666666666666666643 2334455666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhc
Q 006071 597 LAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQE 634 (662)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (662)
...|+..+|+..+.+.+... +|...++..|...+.+.
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 66666666666666666543 23444444455444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=0.0035 Score=56.06 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHc
Q 006071 60 LKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRR 139 (662)
Q Consensus 60 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 139 (662)
..++..|.+.|.++.|..++..+.. |..++..+.+.++++.|.+.+.+. .+..+|..+...+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhC
Confidence 3444444455555555555543332 334444444445555444444322 2333444444444444
Q ss_pred CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006071 140 GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR 208 (662)
Q Consensus 140 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 208 (662)
....-+ .+.......++.....++..|-..|.+++...+++..... -..+...++-++..|++
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 333221 1111112223333334444444445555554444444322 12234444444444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.9e-05 Score=61.68 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=27.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+..+|.+.|++++|+..++.++..++. +...+..++.+|...|++++|+..|+++++
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455555555555555444433 344444444455555555555555544444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=8.3e-05 Score=60.28 Aligned_cols=61 Identities=5% Similarity=-0.179 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
|..+..+|.+.|++++|+..++.++...|.++.++..++.+|...|++++|...|+.+.+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4445555666666666666666666666666666666666666666666666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=8.4e-05 Score=60.14 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=60.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCC
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (662)
++.++...|++++|+..+++++..+| .+...|..++.++...|++++|++.|++++...+ .+......+..+....+.
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHh
Confidence 45566678888888888888888753 3455666788888888888888888888887543 344444445555444444
Q ss_pred cchh--HHHHHHhhhh
Q 006071 637 TKQA--DILSRMIRGE 650 (662)
Q Consensus 637 ~~~a--~~~~~~~~~~ 650 (662)
..+. ..+..++.+.
T Consensus 148 ~~e~~kk~~~~~f~~~ 163 (168)
T d1kt1a1 148 HNERDRRTYANMFKKF 163 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4333 3444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=2.1e-05 Score=60.33 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=55.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-C-----HHHHHHHHH
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW-D-----EDMFEVLIE 99 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l~~ 99 (662)
+...+...|++++|+..|+.+++.+ |.++.++..+..+|.+.|++++|.+.+++++..++.. . ..+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777665 5666677777777777777777777776655432110 0 124444555
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 006071 100 SYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~ 119 (662)
.+...+++++|+..|+....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 55555666666666655544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.96 E-value=0.00013 Score=57.76 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+..+..+|.+.|++++|+..++.+++.++. +...|..++.++...|++++|+..|++.++
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555555555555443 455555555555555555555555555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.91 E-value=0.00019 Score=56.84 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
+++.+..+|.+.|++++|+..++.+.+.+ +.+..+|..++.++...|++++|...|++..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444555555555555555544432 22444555555555555555555555555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=6.9e-05 Score=57.31 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC-----HHhHHHHHH
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD-----ADAYICLIE 457 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l~~ 457 (662)
..+...+...|++++|+..|.+.++..|.++.++..+..+|...|++++|...++.+.+.... +. ..+|..+..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777777777777777777777777777777766542110 00 134555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 006071 458 SYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~ 477 (662)
.+...+++++|+..+++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=8.1e-06 Score=79.88 Aligned_cols=113 Identities=12% Similarity=-0.088 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (662)
...+..+...+.+.|+.+.|...+...+... ...++..+...+...+++++|...|+++.+..|.+..+
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~ 188 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP 188 (497)
T ss_dssp -----------------------CCHHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHH
Confidence 3344445555555555555555554443221 01234455555666666666666666666666666666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (662)
|+.++..+...|+..+|...|.+..... +|-..++..|...+.+
T Consensus 189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 189 YNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 6666666666666666666666665543 3355555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.0089 Score=53.38 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
+|..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3444445566777788888888888877654 667778888888888888777655 2456777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 245 (662)
..+........+ .+.......+......++..|-..|.+++...+++..... -.++...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 777766655432 2222333345566667778888888888888888776543 2445666777777777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.82 E-value=1.4e-05 Score=69.90 Aligned_cols=124 Identities=15% Similarity=0.028 Sum_probs=82.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
-..+.|++++|+..|+.+++.. |.+...+..++..++..|++++|...|+...+..+. +...+..+...+...+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccH
Confidence 4557799999999999999887 889999999999999999999999999988876433 3445554444443333333
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
++..........+.+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 32222111111122223334444556677788888888888887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.0002 Score=58.14 Aligned_cols=123 Identities=10% Similarity=-0.037 Sum_probs=77.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
....+...|++++|.+.|..++... +.+... .......+...-..+.. .....+..+...+...|
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~---------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPVLD---------DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTG---------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccccc---------cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 3456778999999999999998863 222110 00001111111111111 12345667777778888
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCcCHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS-----EGIEPTRHTY 164 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 164 (662)
++++|+..++.+.+.. +.+...|..++.++.+.|+..+|++.|+++.. .|+.|+..+-
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 8888888888877764 45777788888888888888888888877633 4777776553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.81 E-value=0.00054 Score=55.15 Aligned_cols=59 Identities=7% Similarity=-0.156 Sum_probs=32.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
.+..+|.+.|++++|+..++.++...|.+..++..+..++...|++++|...|+.+...
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555555555555555555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.80 E-value=2.4e-05 Score=68.40 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=81.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHhccCCHHH
Q 006071 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLL----SVLSEKGKTIA 569 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~~~~~~g~~~~ 569 (662)
..+.|++++|+..+++.++..+. +...+..++..|+..|++++|++.++...+ ..|+..... .++...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 45678999999999999888777 788888899999999999999999988887 566643322 23323333333
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
+..-.........++....+...+..+.+.|+.++|.+.++++.+...
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 322222111112222234444566777889999999999999877543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00024 Score=57.48 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 488 RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..+..++.+.|++++|+..++++++..+. +...|..++.++...|++++|++.|+++++
T Consensus 81 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 81 LNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444455555555555555544333 444444455555555555555555554444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=5.9e-05 Score=59.13 Aligned_cols=70 Identities=9% Similarity=-0.024 Sum_probs=46.3
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh----------HHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKL----------NHARCILLDMPKKGVQWDEDMFEVLIES 100 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (662)
.+.+.+++|+..|+.+++.+ |.++.++..+..++...+++ ++|+..|++.++..+. +..+|..+..+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 44566899999999999988 88999999999888765444 4455555555444332 44444444444
Q ss_pred HHh
Q 006071 101 YGK 103 (662)
Q Consensus 101 ~~~ 103 (662)
|..
T Consensus 85 y~~ 87 (145)
T d1zu2a1 85 YTS 87 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.0002 Score=58.01 Aligned_cols=62 Identities=13% Similarity=-0.041 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
..+..+..++.+.|++++|+..++.+.+... .+...|..+..++...|++++|+..|++.++
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444555555555555555555554432 2444555555555555555555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.0011 Score=53.70 Aligned_cols=58 Identities=9% Similarity=0.006 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 440 (662)
+..+..++...|++++|+..++.+....|.+...|..++.+|...|+..+|++.|+.+
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=0.00028 Score=55.11 Aligned_cols=72 Identities=10% Similarity=-0.097 Sum_probs=53.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG----------NPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
.+.+.+++|...|+...+..|.++.++..+..++...+ .+++|+..|+.+.+.++ .+..+|..+..+|.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHHHH
Confidence 44567899999999999999999999999998887543 44667777777776542 25667777777766
Q ss_pred hcC
Q 006071 461 RKG 463 (662)
Q Consensus 461 ~~~ 463 (662)
..|
T Consensus 87 ~~g 89 (145)
T d1zu2a1 87 SFA 89 (145)
T ss_dssp HHH
T ss_pred Hcc
Confidence 544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.43 E-value=0.00038 Score=55.25 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.+..++.+|...|++++|++.|++.++
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999775
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0047 Score=48.63 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEK-----GVKEN-----LDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
.|+.+..+|...|++++|...+++.++. ...++ ...+..+..+|...|++++|++.|++.+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554432 11111 1123344555555555555555555444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0033 Score=44.41 Aligned_cols=83 Identities=13% Similarity=0.010 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (662)
...+..+...+.+.|+++.|+..|++.++.... ..........++..+..++.+.|++++|...++++++..|.++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~--~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDE--GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh--hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence 334456778888999999999999988776521 111111123467788888999999999999999999988888887
Q ss_pred HHHHH
Q 006071 417 FNNLI 421 (662)
Q Consensus 417 ~~~l~ 421 (662)
++.+.
T Consensus 83 ~~Nl~ 87 (95)
T d1tjca_ 83 NGNLK 87 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0035 Score=44.21 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 489 SVMESLFEDGRVQTASRVMKSMVEKG-----VKEN-LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
.+...+.+.|++++|+..|+++++.. ..++ ..++..+..++.+.|++++|++.++++++ +.|+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~ 78 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcC
Confidence 44555566666666666666655431 1111 34455566666666666666666666665 4454
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.33 E-value=0.03 Score=42.21 Aligned_cols=48 Identities=13% Similarity=-0.055 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 616 (662)
+.++|.++|+++.+.+. +.....|+..|.. ..+.++|.+++++..+.+
T Consensus 74 d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 45556666665555431 2223345555544 235666666666655554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.83 E-value=0.22 Score=37.14 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhC
Q 006071 176 KLETAIRFFEDMKSR 190 (662)
Q Consensus 176 ~~~~a~~~~~~~~~~ 190 (662)
++++|..+|++..+.
T Consensus 8 d~~~A~~~~~kaa~~ 22 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL 22 (133)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 344444444444444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=1.1 Score=41.83 Aligned_cols=54 Identities=7% Similarity=-0.146 Sum_probs=32.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhh
Q 006071 592 VLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (662)
.+..|...|...+|...+..+.... +......+.....+.|.++.|........
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 4566667777777777777665443 23333445566667777777765555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.03 E-value=0.37 Score=34.38 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=25.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
++.+..+|.-+.-.++++.+.+. -.+++.....+..+|.+.|...++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33344444444444444444332 23344444444445555555555544444444444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.23 Score=35.87 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
.++++.+++.+.+.++.-....+..+.-+|.+.|++++|.+.++++++ +.|+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 445666666665543321234444556666666666666666666665 4554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=2.4 Score=39.24 Aligned_cols=412 Identities=9% Similarity=0.032 Sum_probs=184.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH--HhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEIL--GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
.-....|+...+.++...+. . +|.-+ |...-..- .......++..++++-+.. +.........+..+.+.+
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~-d--ypL~p--Yl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLK-D--YPLYP--YLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGT-T--STTHH--HHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHhhhc-C--CCCHH--HHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhcc
Confidence 34456667776666666652 1 22222 22222222 2233455555555544331 111122333345556666
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
+++.....+. ..+.+...-.....+....|+...|...+..+...|.. .+.....+...+
T Consensus 87 ~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~-------------- 146 (450)
T d1qsaa1 87 DWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVW-------------- 146 (450)
T ss_dssp CHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHH--------------
T ss_pred CHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHH--------------
Confidence 6655443331 12345555556666777777777777776666554322 222223333322
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
.+.|.. +...+-.-+......|++..|..++..+... .......++...... ..+..... .. .++
T Consensus 147 --~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p---~~~~~~~~---~~--~~~ 211 (450)
T d1qsaa1 147 --RASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNP---NTVLTFAR---TT--GAT 211 (450)
T ss_dssp --HHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCG---GGHHHHHH---HS--CCC
T ss_pred --HhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhCh---HhHHHHHh---cC--CCC
Confidence 222211 2222223333444455655555554432211 112223333332211 11111111 11 122
Q ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH----HHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 006071 266 AVTYTALLPGLCD--AGKMVEVQKVLREMVERYIPPKDNSVFMKLL----GVQCKSGHLNAAADVLKAMIRLSIPTEAGH 339 (662)
Q Consensus 266 ~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (662)
......+..++.+ ..+.+.+..++......... +...+..+. ......+..+.+...+......+ .+...
T Consensus 212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 287 (450)
T d1qsaa1 212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc--cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHH
Confidence 2222222222222 24566666666665554222 222122211 22223455566666666555442 33333
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNN 419 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (662)
....+......+++..+...+..+ +..... .....--+..++...|+.+.|...|..+... ++ |-.
T Consensus 288 ~~w~~~~al~~~~~~~~~~~~~~l--------~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~--~~---fYG 353 (450)
T d1qsaa1 288 IERRVRMALGTGDRRGLNTWLARL--------PMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ--RG---FYP 353 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS--------CTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CS---HHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHhc--------Cccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHhcC--CC---hHH
Confidence 344444455567777777777665 221111 1112233456666777777777777776642 22 222
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCC--CC-H---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 006071 420 LIRGHSKEGNPDSAFEIVKIMGRRGVP--RD-A---DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (662)
.+.+- +.|..-. +....++ +. . ..-...+..+...|....|...|..+... . +......+...
T Consensus 354 ~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~l 422 (450)
T d1qsaa1 354 MVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARY 422 (450)
T ss_dssp HHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHH
T ss_pred HHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHH
Confidence 22221 1111100 0000000 00 0 00112345566778888888888777642 2 33344556666
Q ss_pred HHhcCCHHHHHHHHHHH
Q 006071 494 LFEDGRVQTASRVMKSM 510 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~ 510 (662)
..+.|.++.|+......
T Consensus 423 A~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 423 AFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77788888888666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.24 Score=35.74 Aligned_cols=62 Identities=11% Similarity=-0.073 Sum_probs=46.4
Q ss_pred HHHHHHhcc---CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 556 SLLSVLSEK---GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 556 ~~~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+++++.+. .+.++++.+++.++..++......++.++-+|++.|++++|.+.++++++..+
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 356666654 46678999999888765433334555789999999999999999999888753
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.76 E-value=1.1 Score=31.88 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=64.5
Q ss_pred HcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHH
Q 006071 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEK 217 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 217 (662)
-.|..++..++..+.... .+..-||.+|--....-+-+...+.++.+-+. + | ...+++......
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHHHH
Confidence 345555555655555442 23444455554444444555555555444332 1 1 012233333333
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006071 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (662)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 297 (662)
.+-.+- .+...++..+......|+-+.-.++++.+.+.+ ++++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 222221 122333444455555555555555555544432 45555555556666666666666666655555543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.84 E-value=3.1 Score=27.93 Aligned_cols=59 Identities=7% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (662)
++.+-+..+....+.|++....+.+.+|.+.+|+..|.++++....+. .++...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 455555555555667777777777777777777777777777766551 12334454444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.67 E-value=5.6 Score=26.68 Aligned_cols=45 Identities=7% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555554
|