Citrus Sinensis ID: 006076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
Protein Sequence
MWALQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHccccccccHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHcHHccccccccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccEHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHcHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mwalqspqtpqllrspyhtnsiahlppkpssvcccvslnssttptslssrnKNELIQSLCKQGNLRQAldvlsiepnptqHTYELLLLSCThhnslsdalnvhshltdngfdqdpFLVTKLINVYshfdsvddarhvfdktrrRTIYVWNALFRALTLAGRGEEVLELYRRMNgtgtgirsdrFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMEshdlcpnsvTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCgklelgqcvfdhmdkrdvvSWNSLISsygvhgyggkAIQIFKEMiyhgvspspisFVSVLGACSHAGLVEEGKMLFESMRKehmirpsvEHYACMVDLLGRANKLEEAAKIIEDlriepgpkvwgslLGSCRIHCNVELAERASKRLfeleptnagnyVLLADVYAAADMWDEVKRVKRLLEArglqkvpgrsrieVKRKMYSfvsvdefhPQFEQLHALLINLSAEmkekgyvpqtkVVLYDLDAEEKERIVLGHSEKLAVAFGLintskgetiritknlrlceDCHSFTKFISKFAnkeilvrdvnrfhhfrngvcscgdyw
Flexible Loop (DISEMBL)
mwalqspqtpqllRSPYHTNSIAHLPPKPSSVCCCVSLNSsttptslssrnKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYShfdsvddarhvfdktrrrtIYVWNALFRALTLAGRGEEVLELYRRmngtgtgirsdrFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRllearglqkvpgrsrievkRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFglintskgetirITKNLRLCEDCHSFTKFISKFANKEILVRdvnrfhhfrngvcscgdyw
Low Complexity Region (SEG)
MWALQSPQTPQLLRSPYHTNSIAHLPPKPssvcccvslnssttptslssRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVlqacaalaalEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW
Disordered region (IsUnstruct)
*******************************VCCCVSL*****************IQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDY*
Disordered Region (DISOPRED)
**************SPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW
Disordered Region (DISEMBL)
*********PQLLRSPYHTNSIAHLPPKPSSVCCCVSLN**************ELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW
Disordered Region (DISPRO)
MWALQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWALQSPQTPQLLRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	662	2.2.26 [Sep-21-2011]
Q9STF3	657	Pentatricopeptide repeat-	yes	no	0.980	0.987	0.732	0.0
O81767	823	Pentatricopeptide repeat-	no	no	0.910	0.732	0.400	1e-136
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.910	0.677	0.393	1e-133
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.861	0.654	0.412	1e-132
Q9LW32	659	Pentatricopeptide repeat-	no	no	0.912	0.916	0.384	1e-129
Q9LW63	715	Putative pentatricopeptid	no	no	0.871	0.806	0.392	1e-129
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.835	0.698	0.406	1e-127
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.907	0.865	0.384	1e-127
Q9LIC3	628	Putative pentatricopeptid	no	no	0.913	0.963	0.377	1e-127
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.907	0.742	0.382	1e-126

>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/655 (73%), Positives = 551/655 (84%), Gaps = 6/655 (0%)

Query: 10  PQLLRSPYHT-NSIAHLPPKPSSVCCCVSLNSSTTPTSLSSR-NKNELIQSLCKQGNLRQ 67
           PQ+++  YHT N +   P KP S  C V+LN+ +  +   ++ + N+LIQSLCK+G L+Q
Sbjct: 7   PQVIQPTYHTVNFLPRSPLKPPS--CSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQ 64

Query: 68  ALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           A+ VLS E +P+Q TYELL+L C H +SLSDAL VH H+ DNG DQDPFL TKLI +YS 
Sbjct: 65  AIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSD 124

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             SVD AR VFDKTR+RTIYVWNALFRALTLAG GEEVL LY +MN  G  + SDRFTYT
Sbjct: 125 LGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG--VESDRFTYT 182

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           YVLKACVAS C  + L  GKEIHA + R GY+  V+IMTTL+DMYARFGCV YA +VF  
Sbjct: 183 YVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGG 242

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M V+NVVSWSAMIACYA+NG AFEAL  FREM+ E+ D  PNSVTMVSVLQACA+LAALE
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           QGK+IHGYILRRGLDSILPV+SALVTMY RCGKLE+GQ VFD M  RDVVSWNSLISSYG
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           VHGYG KAIQIF+EM+ +G SP+P++FVSVLGACSH GLVEEGK LFE+M ++H I+P +
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQI 422

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHYACMVDLLGRAN+L+EAAK+++D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF 
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LEP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR  +EV+RKMYSFVSVDE
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDE 542

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
           F+P  EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINT
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SKGE IRITKNLRLCEDCH FTKFISKF  KEILVRDVNRFH F+NGVCSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657

Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts.
Arabidopsis thaliana (taxid: 3702)

>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2

 Score =  485 bits (1248), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 381/611 (62%), Gaps = 8/611 (1%)

Query: 53  NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
           N +I   C+ GN ++AL + +        T   LL +CT     +  + +HS+   +G +
Sbjct: 220 NAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 279

Query: 113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
            + F+  KLI++Y+ F  + D + VFD+   R +  WN++ +A  L  +    + L++ M
Sbjct: 280 SELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM 339

Query: 173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN-GIVHIMTTLIDM 231
             +    R      T +  A + S  G   ++  + +    LR G+    + I   ++ M
Sbjct: 340 RLS----RIQPDCLTLISLASILSQLGD--IRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
           YA+ G V  A  VF+ +   +V+SW+ +I+ YA+NG A EA+E++  ++ E  ++  N  
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY-NIMEEEGEIAANQG 452

Query: 292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
           T VSVL AC+   AL QG  +HG +L+ GL   + VV++L  MY +CG+LE    +F  +
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512

Query: 352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
            + + V WN+LI+ +G HG+G KA+ +FKEM+  GV P  I+FV++L ACSH+GLV+EG+
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572

Query: 412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
             FE M+ ++ I PS++HY CMVD+ GRA +LE A K I+ + ++P   +WG+LL +CR+
Sbjct: 573 WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRV 632

Query: 472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
           H NV+L + AS+ LFE+EP + G +VLL+++YA+A  W+ V  ++ +   +GL+K PG S
Sbjct: 633 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 692

Query: 532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
            +EV  K+  F + ++ HP +E+++  L  L A++K  GYVP  + VL D++ +EKE I+
Sbjct: 693 SMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHIL 752

Query: 592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
           + HSE+LA+AF LI T    TIRI KNLR+C DCHS TKFISK   +EI+VRD NRFHHF
Sbjct: 753 MSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHF 812

Query: 652 RNGVCSCGDYW 662
           +NGVCSCGDYW
Sbjct: 813 KNGVCSCGDYW 823

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/627 (39%), Positives = 392/627 (62%), Gaps = 24/627 (3%)

Query: 53  NELIQSLCKQGNLRQALDVL------SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL 106
           N ++ SLC+   L +AL+ L       +EP+  + T   +L +C+H   L     +H++ 
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPD--EFTISSVLPACSHLEMLRTGKELHAYA 328

Query: 107 TDNG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV 165
             NG  D++ F+ + L+++Y +   V   R VFD    R I +WNA+    +     +E 
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388

Query: 166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM 225
           L L+  M  +  G+ ++  T   V+ ACV S          + IH  V++ G +    + 
Sbjct: 389 LLLFIGMEESA-GLLANSTTMAGVVPACVRSGA----FSRKEAIHGFVVKRGLDRDRFVQ 443

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI-MESH 284
            TL+DMY+R G +  A  +F +M  +++V+W+ MI  Y  +    +AL L  +M  +E  
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERK 503

Query: 285 --------DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA 336
                    L PNS+T++++L +CAAL+AL +GK IH Y ++  L + + V SALV MYA
Sbjct: 504 VSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYA 563

Query: 337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS 396
           +CG L++ + VFD + +++V++WN +I +YG+HG G +AI + + M+  GV P+ ++F+S
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623

Query: 397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI 455
           V  ACSH+G+V+EG  +F  M+ ++ + PS +HYAC+VDLLGRA +++EA +++  + R 
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV 515
                 W SLLG+ RIH N+E+ E A++ L +LEP  A +YVLLA++Y++A +WD+   V
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743

Query: 516 KRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQT 575
           +R ++ +G++K PG S IE   +++ FV+ D  HPQ E+L   L  L   M+++GYVP T
Sbjct: 744 RRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDT 803

Query: 576 KVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKF 635
             VL++++ +EKE ++ GHSEKLA+AFG++NTS G  IR+ KNLR+C DCH  TKFISK 
Sbjct: 804 SCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKI 863

Query: 636 ANKEILVRDVNRFHHFRNGVCSCGDYW 662
            ++EI++RDV RFH F+NG CSCGDYW
Sbjct: 864 VDREIILRDVRRFHRFKNGTCSCGDYW 890

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  473 bits (1218), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/577 (41%), Positives = 355/577 (61%), Gaps = 7/577 (1%)

Query: 86  LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT 145
           +   C     +S    VHS      F ++      L+++YS    +D A+ VF +   R+
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKH 205
           +  + ++       G   E ++L+  M   G  I  D +T T VL  C      + LL  
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEG--ISPDVYTVTAVLNCCAR----YRLLDE 415

Query: 206 GKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYAR 265
           GK +H  +  +     + +   L+DMYA+ G +  A  VFS+M VK+++SW+ +I  Y++
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475

Query: 266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL 325
           N  A EAL LF  +++E     P+  T+  VL ACA+L+A ++G+ IHGYI+R G  S  
Sbjct: 476 NCYANEALSLF-NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 326 PVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
            V ++LV MYA+CG L L   +FD +  +D+VSW  +I+ YG+HG+G +AI +F +M   
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
           G+    ISFVS+L ACSH+GLV+EG   F  MR E  I P+VEHYAC+VD+L R   L +
Sbjct: 595 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 654

Query: 446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA 505
           A + IE++ I P   +WG+LL  CRIH +V+LAE+ ++++FELEP N G YVL+A++YA 
Sbjct: 655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 714

Query: 506 ADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE 565
           A+ W++VKR+++ +  RGL+K PG S IE+K ++  FV+ D  +P+ E + A L  + A 
Sbjct: 715 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 774

Query: 566 MKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDC 625
           M E+GY P TK  L D +  EKE  + GHSEKLA+A G+I++  G+ IR+TKNLR+C DC
Sbjct: 775 MIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDC 834

Query: 626 HSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           H   KF+SK   +EI++RD NRFH F++G CSC  +W
Sbjct: 835 HEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 379/621 (61%), Gaps = 17/621 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I  L + G+  +AL   S    +   PT+ ++   + +C+    +      H     
Sbjct: 45  NSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFV 104

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            G+  D F+ + LI +YS    ++DAR VFD+  +R I  W ++ R   L G   + + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 169 YRRM----NGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
           ++ +    N     +  D      V+ AC    + G +     + IH+ V++ G++  V 
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT-----ESIHSFVIKRGFDRGVS 219

Query: 224 IMTTLIDMYARFG--CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           +  TL+D YA+ G   V  A  +F Q+  K+ VS++++++ YA++GM+ EA E+FR ++ 
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV- 278

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
           ++  +  N++T+ +VL A +   AL  GK IH  ++R GL+  + V ++++ MY +CG++
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           E  +  FD M  ++V SW ++I+ YG+HG+  KA+++F  MI  GV P+ I+FVSVL AC
Sbjct: 339 ETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SHAGL  EG   F +M+    + P +EHY CMVDLLGRA  L++A  +I+ ++++P   +
Sbjct: 399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W SLL +CRIH NVELAE +  RLFEL+ +N G Y+LL+ +YA A  W +V+RV+ +++ 
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           RGL K PG S +E+  +++ F+  DE HPQ E+++  L  L+ ++ E GYV  T  V +D
Sbjct: 519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D EEKE  +  HSEKLA+AFG++NT  G T+ + KNLR+C DCH+  K ISK  ++E +
Sbjct: 579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD  RFHHF++G CSCGDYW
Sbjct: 639 VRDAKRFHHFKDGGCSCGDYW 659

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1

 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/621 (39%), Positives = 367/621 (59%), Gaps = 44/621 (7%)

Query: 78  PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH---------- 127
           P  + +  +L SCT    L    +VH  +   G D D +    L+N+Y+           
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISV 162

Query: 128 ---FD-----------------------SVDDARHVFDKTRRRTIYVWNALFRALTLAGR 161
              FD                        +D  R VF+   R+ +  +N +      +G 
Sbjct: 163 GNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGM 222

Query: 162 GEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI 221
            E+ L + R M GT T ++ D FT + VL      S    ++K GKEIH  V+R G +  
Sbjct: 223 YEDALRMVREM-GT-TDLKPDSFTLSSVLPIF---SEYVDVIK-GKEIHGYVIRKGIDSD 276

Query: 222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
           V+I ++L+DMYA+   +  +  VFS++  ++ +SW++++A Y +NG   EAL LFR+M+ 
Sbjct: 277 VYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV- 335

Query: 282 ESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
            +  + P +V   SV+ ACA LA L  GK +HGY+LR G  S + + SALV MY++CG +
Sbjct: 336 -TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNI 394

Query: 342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
           +  + +FD M+  D VSW ++I  + +HG+G +A+ +F+EM   GV P+ ++FV+VL AC
Sbjct: 395 KAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC 454

Query: 402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
           SH GLV+E    F SM K + +   +EHYA + DLLGRA KLEEA   I  + +EP   V
Sbjct: 455 SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSV 514

Query: 462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
           W +LL SC +H N+ELAE+ ++++F ++  N G YVL+ ++YA+   W E+ +++  +  
Sbjct: 515 WSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRK 574

Query: 522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
           +GL+K P  S IE+K K + FVS D  HP  ++++  L  +  +M+++GYV  T  VL+D
Sbjct: 575 KGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHD 634

Query: 582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
           +D E K  ++ GHSE+LAVAFG+INT  G TIR+TKN+R+C DCH   KFISK   +EI+
Sbjct: 635 VDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREII 694

Query: 642 VRDVNRFHHFRNGVCSCGDYW 662
           VRD +RFHHF  G CSCGDYW
Sbjct: 695 VRDNSRFHHFNRGNCSCGDYW 715

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  457 bits (1176), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/564 (40%), Positives = 346/564 (61%), Gaps = 11/564 (1%)

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
            + +HS  T  G     +++T  I++YS    +     +F + R+  I  +NA+    T 
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY 218
            G  E  L L++ +  +G  +RS        L + V  S    L+     IH   L+  +
Sbjct: 300 NGETELSLSLFKELMLSGARLRSS------TLVSLVPVSGHLMLIY---AIHGYCLKSNF 350

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
                + T L  +Y++   +  A  +F +   K++ SW+AMI+ Y +NG+  +A+ LFRE
Sbjct: 351 LSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M  +  +  PN VT+  +L ACA L AL  GK +H  +     +S + V +AL+ MYA+C
Sbjct: 411 M--QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC 468

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
           G +   + +FD M K++ V+WN++IS YG+HG G +A+ IF EM+  G++P+P++F+ VL
Sbjct: 469 GSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVL 528

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG 458
            ACSHAGLV+EG  +F SM   +   PSV+HYACMVD+LGRA  L+ A + IE + IEPG
Sbjct: 529 YACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPG 588

Query: 459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL 518
             VW +LLG+CRIH +  LA   S++LFEL+P N G +VLL+++++A   + +   V++ 
Sbjct: 589 SSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQT 648

Query: 519 LEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVV 578
            + R L K PG + IE+    + F S D+ HPQ ++++  L  L  +M+E GY P+T++ 
Sbjct: 649 AKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELA 708

Query: 579 LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANK 638
           L+D++ EE+E +V  HSE+LA+AFGLI T  G  IRI KNLR+C DCH+ TK ISK   +
Sbjct: 709 LHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITER 768

Query: 639 EILVRDVNRFHHFRNGVCSCGDYW 662
            I+VRD NRFHHF++GVCSCGDYW
Sbjct: 769 VIVVRDANRFHHFKDGVCSCGDYW 792

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  457 bits (1176), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/616 (38%), Positives = 379/616 (61%), Gaps = 15/616 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N +I+   +  + + AL + S       +P   T+  LL +C+  + L     VH+ +  
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVL 166
            GFD D F+   LI +Y+    +  AR VF+      RTI  W A+  A    G   E L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 167 ELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMT 226
           E++ +M      ++ D      VL A    +C    LK G+ IHASV++ G      ++ 
Sbjct: 208 EIFSQMRKMD--VKPDWVALVSVLNAF---TC-LQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL 286
           +L  MYA+ G V  A  +F +M   N++ W+AMI+ YA+NG A EA+++F EMI  + D+
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMI--NKDV 319

Query: 287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQC 346
            P+++++ S + ACA + +LEQ + ++ Y+ R      + + SAL+ M+A+CG +E  + 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379

Query: 347 VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL 406
           VFD    RDVV W+++I  YG+HG   +AI +++ M   GV P+ ++F+ +L AC+H+G+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 466
           V EG   F  M  +H I P  +HYAC++DLLGRA  L++A ++I+ + ++PG  VWG+LL
Sbjct: 440 VREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQK 526
            +C+ H +VEL E A+++LF ++P+N G+YV L+++YAAA +WD V  V+  ++ +GL K
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558

Query: 527 VPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEE 586
             G S +EV+ ++ +F   D+ HP++E++   +  + + +KE G+V      L+DL+ EE
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEE 618

Query: 587 KERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVN 646
            E  +  HSE++A+A+GLI+T +G  +RITKNLR C +CH+ TK ISK  ++EI+VRD N
Sbjct: 619 AEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTN 678

Query: 647 RFHHFRNGVCSCGDYW 662
           RFHHF++GVCSCGDYW
Sbjct: 679 RFHHFKDGVCSCGDYW 694

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1

 Score =  457 bits (1175), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 381/630 (60%), Gaps = 25/630 (3%)

Query: 46  SLSSRNKNELIQS------LCKQGNLRQAL-DVLSIEPNPTQHTYELLLLSCTHHNSLSD 98
           S SS   N ++Q+      LC  G L++AL ++  + P    H Y+ LL +C    +L D
Sbjct: 11  SFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRD 70

Query: 99  ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTL 158
              VH+H+    +    +L T+L+  Y   D ++DAR V D+   + +  W A+    + 
Sbjct: 71  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130

Query: 159 AGRGEEVLELYRRMNGTGTGIRSD----RFTYTYVLKACVASSCGFSLLKHGKEIHASVL 214
            G   E L ++  M      +RSD     FT+  VL +C+ +S G  L   GK+IH  ++
Sbjct: 131 TGHSSEALTVFAEM------MRSDGKPNEFTFATVLTSCIRAS-GLGL---GKQIHGLIV 180

Query: 215 RHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALE 274
           +  Y+  + + ++L+DMYA+ G +  A  +F  +  ++VVS +A+IA YA+ G+  EALE
Sbjct: 181 KWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALE 240

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTM 334
           +F  +   S  + PN VT  S+L A + LA L+ GK  H ++LRR L     + ++L+ M
Sbjct: 241 MFHRL--HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 298

Query: 335 YARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPIS 393
           Y++CG L   + +FD+M +R  +SWN+++  Y  HG G + +++F+ M     V P  ++
Sbjct: 299 YSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 358

Query: 394 FVSVLGACSHAGLVEEGKMLFESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED 452
            ++VL  CSH  + + G  +F+ M   E+  +P  EHY C+VD+LGRA +++EA + I+ 
Sbjct: 359 LLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKR 418

Query: 453 LRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV 512
           +  +P   V GSLLG+CR+H +V++ E   +RL E+EP NAGNYV+L+++YA+A  W +V
Sbjct: 419 MPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADV 478

Query: 513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYV 572
             V+ ++  + + K PGRS I+ ++ ++ F + D  HP+ E++ A +  +S +MK+ GYV
Sbjct: 479 NNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 538

Query: 573 PQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFI 632
           P    VLYD+D E+KE+++LGHSEKLA+ FGLI T +G  IR+ KNLR+C DCH+F K  
Sbjct: 539 PDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIF 598

Query: 633 SKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SK   +E+ +RD NRFH   +G+CSCGDYW
Sbjct: 599 SKVFEREVSLRDKNRFHQIVDGICSCGDYW 628

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  453 bits (1166), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 374/614 (60%), Gaps = 13/614 (2%)

Query: 53  NELIQSLCKQGNLRQALDVLS--IEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N ++    + G  R AL+++    E N  P+  T   +L + +    +S    +H +   
Sbjct: 205 NTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMR 264

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
           +GFD    + T L+++Y+   S++ AR +FD    R +  WN++  A       +E + +
Sbjct: 265 SGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLI 324

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +++M     G++    +    L AC         L+ G+ IH   +  G +  V ++ +L
Sbjct: 325 FQKM--LDEGVKPTDVSVMGALHAC----ADLGDLERGRFIHKLSVELGLDRNVSVVNSL 378

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY +   V  A  +F ++  + +VSW+AMI  +A+NG   +AL  F +M   S  + P
Sbjct: 379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM--RSRTVKP 436

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           ++ T VSV+ A A L+     K IHG ++R  LD  + V +ALV MYA+CG + + + +F
Sbjct: 437 DTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIF 496

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
           D M +R V +WN++I  YG HG+G  A+++F+EM    + P+ ++F+SV+ ACSH+GLVE
Sbjct: 497 DMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVE 556

Query: 409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
            G   F  M++ + I  S++HY  MVDLLGRA +L EA   I  + ++P   V+G++LG+
Sbjct: 557 AGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616

Query: 469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
           C+IH NV  AE+A++RLFEL P + G +VLLA++Y AA MW++V +V+  +  +GL+K P
Sbjct: 617 CQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP 676

Query: 529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
           G S +E+K +++SF S    HP  ++++A L  L   +KE GYVP T +VL  ++ + KE
Sbjct: 677 GCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKE 735

Query: 589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
           +++  HSEKLA++FGL+NT+ G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RF
Sbjct: 736 QLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRF 795

Query: 649 HHFRNGVCSCGDYW 662
           HHF+NG CSCGDYW
Sbjct: 796 HHFKNGACSCGDYW 809

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	662
224104375	650	predicted protein [Populus trichocarpa]	0.978	0.996	0.792	0.0
225434804	658	PREDICTED: pentatricopeptide repeat-cont	0.989	0.995	0.774	0.0
449455172	649	PREDICTED: pentatricopeptide repeat-cont	0.977	0.996	0.756	0.0
15232648	657	pentatricopeptide repeat-containing prot	0.980	0.987	0.732	0.0
297819260	657	hypothetical protein ARALYDRAFT_905886 [	0.980	0.987	0.729	0.0
356568841	658	PREDICTED: pentatricopeptide repeat-cont	0.992	0.998	0.693	0.0
356526561	658	PREDICTED: pentatricopeptide repeat-cont	0.992	0.998	0.690	0.0
357502521	654	Pentatricopeptide repeat-containing prot	0.978	0.990	0.645	0.0
414876354	830	TPA: hypothetical protein ZEAMMB73_49407	0.968	0.772	0.544	0.0
357131283	654	PREDICTED: pentatricopeptide repeat-cont	0.935	0.946	0.566	0.0

>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/664 (79%), Positives = 579/664 (87%), Gaps = 16/664 (2%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPKPS--SVCCCVSLNSSTTPTSLSSRNKNELIQS 58
           MWA QSP+T  L        S A   P+PS     C ++LN    PT+ S+ + N+LIQS
Sbjct: 1   MWAFQSPKTTLL-------PSNATFLPRPSLKPPICSITLN----PTA-STADNNKLIQS 48

Query: 59  LCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           LCKQGNL QAL++LS+EPNP QHTYELL+LSCTH NSL DA  VH HL +NGFDQDPFL 
Sbjct: 49  LCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLA 108

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           TKLIN+YS FDS+D+AR VFDKTR RTIYV+NALFRAL+LAG GEEVL +YRRMN  G  
Sbjct: 109 TKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIG-- 166

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           I SDRFTYTYVLKACVAS C  SLL  G+EIHA +LRHGY+G VHIMTTL+DMYA+FGCV
Sbjct: 167 IPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCV 226

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
             A  VF+QM VKNVVSWSAMIACYA+NG AFEALELFRE+++E+ DLCPNSVTMVSVLQ
Sbjct: 227 SNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQ 286

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ACAALAALEQG++IHGYILR+GLDSILPV+SALVTMYARCGKLELGQ VFD MDKRDVVS
Sbjct: 287 ACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVS 346

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WNSLISSYGVHG+G KAI IF+EM Y+GV PSPISFVSVLGACSHAGLV+EGKMLF SM 
Sbjct: 347 WNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMH 406

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
             H I PSVEHYACMVDLLGRAN+LEEAAKIIE++RIEPGPKVWGSLLGSCRIHCNVELA
Sbjct: 407 VAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELA 466

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           ERAS RLF+LEPTNAGNYVLLAD+YA A MWD VKRVK+LLEARGLQKVPGRS IEVKRK
Sbjct: 467 ERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRK 526

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           +YSFVSVDE +P+ EQLHALL+ LS E+KE+GYVPQTKVVLYDL A EKERIVLGHSEKL
Sbjct: 527 IYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKL 586

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           AVAFGLIN+SKGE IRITK+LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR+GVCSC
Sbjct: 587 AVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSC 646

Query: 659 GDYW 662
           GDYW
Sbjct: 647 GDYW 650

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Vitis vinifera]

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/665 (77%), Positives = 572/665 (86%), Gaps = 10/665 (1%)

Query: 1   MWALQSPQTPQL--LRSPYHTNSIAHLPPKPSSVCCCVSLNSSTTPTSL-SSRNKNELIQ 57
           MWA Q+PQT Q   L  P+H  +   + PKP    CC++L  STT  S   S N N LIQ
Sbjct: 1   MWAFQTPQTIQQPHLPKPFHKPTA--ISPKPQ---CCLALRPSTTTRSNGDSNNNNPLIQ 55

Query: 58  SLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL 117
           SLCKQGNL QAL VLS EPNPTQHTYELL+LSCT  NSL   +++H HL  +G DQDPFL
Sbjct: 56  SLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFL 115

Query: 118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT 177
            TKLIN+YS  DS+D+AR VFDKTR+RTIYVWNALFRALTLAG G EVL+LYRRMN  G 
Sbjct: 116 ATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIG- 174

Query: 178 GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC 237
            + SDRFTYTYVLKACVAS    SLL +G+EIH  +LRHG+ G VHIMTTL+DMYARFGC
Sbjct: 175 -VPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGC 233

Query: 238 VMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVL 297
           V+ A  VF QM VKNVVSWSAMIACY++NG   EALELFR+M++E+ DL PNSVTMVSVL
Sbjct: 234 VLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVL 293

Query: 298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           QACAALAALEQGK++HGYILRRGLDSILPVVSALVT+YARCG LELG  VF+ M+KRDVV
Sbjct: 294 QACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVV 353

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SWNSLISSYG+HG+G KAIQIFKEMI  G+SPSPISFVSVLGACSHAGLVEEGK+LFESM
Sbjct: 354 SWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESM 413

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            + H I PSVEHYACMVDLLGRAN+L+EAAKII+D+RIEPGPKVWGSLLGSCRIHCNVEL
Sbjct: 414 VRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVEL 473

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
           AERA+ RLFELEPTNAGNYVLLAD+YA A MW+EVKRVK LLEARGLQKVPGRS IE++R
Sbjct: 474 AERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRR 533

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           K+YSF+SVDEF+PQ EQLHALL+ LS EMKEKGYVP TKVVLYDLD EEKERIVLGHSEK
Sbjct: 534 KIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEK 593

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLIN+ KGETIRITKNLRLCEDCHS TKFISKFAN+EILVRDVNRFH F++GVCS
Sbjct: 594 LALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCS 653

Query: 658 CGDYW 662
           CGDYW
Sbjct: 654 CGDYW 658

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus] gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus]

 Score = 1031 bits (2665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/664 (75%), Positives = 565/664 (85%), Gaps = 17/664 (2%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPK-PSSVCCCVSLNS-STTPTSLSSRNKNELIQS 58
           MWAL         R+PY T    H PP  P      +S++S S  P++  + N N LIQS
Sbjct: 1   MWAL---------RTPYST----HYPPSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQS 47

Query: 59  LCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           LCKQGNL+QAL +LS E NPTQ T ELL+LS    NSLSDAL+VH  L D GFDQDPFL 
Sbjct: 48  LCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLA 107

Query: 119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG 178
           TKLIN++S  D+VD+AR VFDKTR+RTIYVWNALFRAL LAGRG +VLELY RMN  G  
Sbjct: 108 TKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMG-- 165

Query: 179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV 238
           + SDRFTYTY+LKACVAS C  S L+ GKEIHA +LRHGY   VH+MTTL+DMYARFGCV
Sbjct: 166 VSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCV 225

Query: 239 MYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ 298
            YA  VF +M VKNVVSWSAMIACYA+NG  +EALELFREM++ +HD  PNSVTMVSVLQ
Sbjct: 226 SYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQ 285

Query: 299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS 358
           ACAA AALEQGK+IH YILRRGLDSILPV+SAL+TMYARCGKLE GQ +FD M K+DVV 
Sbjct: 286 ACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVL 345

Query: 359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR 418
           WNSLISSYG+HGYG KAI+IF+EMI HG SPS ISF+SVLGACSH GLVEEGK LFESM 
Sbjct: 346 WNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMV 405

Query: 419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELA 478
           KEH I+PSVEHYACMVDLLGRAN+L+EAAKIIEDLRIEPGPKVWGSLLG+CRIHC+VELA
Sbjct: 406 KEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELA 465

Query: 479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRK 538
           ERASKRLF+LEPTNAGNYVLLAD+YA A+MWDEVKRVK+LL++R LQKVPGRS IEV+RK
Sbjct: 466 ERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRK 525

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKL 598
           +YSF SVDEF+PQ EQLHALL+NLS EMK++GY PQTK+VLYDLD EEKERIVLGHSEKL
Sbjct: 526 IYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKL 585

Query: 599 AVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSC 658
           AVAFGLINTSKG+TIRITKNLRLCEDCHS TKFISKFA++EI+VRD+NRFHHF++GVCSC
Sbjct: 586 AVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSC 645

Query: 659 GDYW 662
           GDYW
Sbjct: 646 GDYW 649

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46790, chloroplastic; AltName: Full=Protein CHLORORESPIRATORY REDUCTION 2; Flags: Precursor gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana] gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana] gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/655 (73%), Positives = 551/655 (84%), Gaps = 6/655 (0%)

Query: 10  PQLLRSPYHT-NSIAHLPPKPSSVCCCVSLNSSTTPTSLSSR-NKNELIQSLCKQGNLRQ 67
           PQ+++  YHT N +   P KP S  C V+LN+ +  +   ++ + N+LIQSLCK+G L+Q
Sbjct: 7   PQVIQPTYHTVNFLPRSPLKPPS--CSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQ 64

Query: 68  ALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           A+ VLS E +P+Q TYELL+L C H +SLSDAL VH H+ DNG DQDPFL TKLI +YS 
Sbjct: 65  AIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSD 124

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             SVD AR VFDKTR+RTIYVWNALFRALTLAG GEEVL LY +MN  G  + SDRFTYT
Sbjct: 125 LGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG--VESDRFTYT 182

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           YVLKACVAS C  + L  GKEIHA + R GY+  V+IMTTL+DMYARFGCV YA +VF  
Sbjct: 183 YVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGG 242

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M V+NVVSWSAMIACYA+NG AFEAL  FREM+ E+ D  PNSVTMVSVLQACA+LAALE
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           QGK+IHGYILRRGLDSILPV+SALVTMY RCGKLE+GQ VFD M  RDVVSWNSLISSYG
Sbjct: 303 QGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           VHGYG KAIQIF+EM+ +G SP+P++FVSVLGACSH GLVEEGK LFE+M ++H I+P +
Sbjct: 363 VHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQI 422

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHYACMVDLLGRAN+L+EAAK+++D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF 
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LEP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR  +EV+RKMYSFVSVDE
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDE 542

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
           F+P  EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINT
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SKGE IRITKNLRLCEDCH FTKFISKF  KEILVRDVNRFH F+NGVCSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp. lyrata] gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp. lyrata]

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/655 (72%), Positives = 549/655 (83%), Gaps = 6/655 (0%)

Query: 10  PQLLRSPYHT-NSIAHLPPKPSSVCCCVSLNSSTTPTSLSSR-NKNELIQSLCKQGNLRQ 67
           PQ+++  Y+T N +   P KP    C V+LN+ +  +   ++ + N+LIQSLCK+G L+Q
Sbjct: 7   PQVIQPNYYTVNFLPRSPLKPP--LCSVALNNLSISSGAGAKISNNQLIQSLCKEGKLKQ 64

Query: 68  ALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSH 127
           AL VLS E +P+Q TYELL+L C H +SLSD L VH H+ DNG DQDPFL TKLI +YS 
Sbjct: 65  ALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSD 124

Query: 128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYT 187
             SVD AR VFDKTR+RTIYVWNALFRALTLAG GEEVL LY +MN  G  + SDRFTYT
Sbjct: 125 LGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG--VESDRFTYT 182

Query: 188 YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ 247
           YVLKACVAS C    L  GKEIHA + R GYN  V+IMTTL+DMYARFGCV YA +VF+ 
Sbjct: 183 YVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNG 242

Query: 248 MAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALE 307
           M V+NVVSWSAMIACYA+NG AFEAL  FREM+ E+ D  PNSVTMVSVLQACA+LAALE
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALE 302

Query: 308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYG 367
           QG++IHGYILRRGLDSILPV+SALVTMY RCGKL++GQ VFD M  RDVVSWNSLISSYG
Sbjct: 303 QGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV 427
           VHGYG KAIQIF+EM+ +G SP+P++FVSVLGACSH GLVEEGK LFESM ++H I+P V
Sbjct: 363 VHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQV 422

Query: 428 EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE 487
           EHYACMVDLLGRAN+L+EAAK+++D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF 
Sbjct: 423 EHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFA 482

Query: 488 LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDE 547
           LEP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR  +EV+RKMYSFVS+DE
Sbjct: 483 LEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDE 542

Query: 548 FHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINT 607
           F+P  EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINT
Sbjct: 543 FNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINT 602

Query: 608 SKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           SKGE IRITKNLRLCEDCH FTKFISKF  KEILVRDVNRFH F+NGVCSCGDYW
Sbjct: 603 SKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Glycine max]

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/663 (69%), Positives = 532/663 (80%), Gaps = 6/663 (0%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPK-PSSVCCCVSLNSSTTPTSLSSRNKNELIQSL 59
           MW LQ PQ  +   S  H    +H+  + P S    VSLN S    +    N N+LIQSL
Sbjct: 1   MWVLQIPQIVRHAPSQSHLCYNSHVSSRVPVSF---VSLNPSANLMNDIKGNNNQLIQSL 57

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           CK GNL+QA+ +L  EPNPTQ T+E L+ SC   NSLSD L+VH  L  +GFDQDPFL T
Sbjct: 58  CKGGNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLAT 117

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
           KLIN+Y    S+D AR VFD+TR RTIYVWNALFRAL + G G+E+L+LY +MN  G  I
Sbjct: 118 KLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG--I 175

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
            SDRFTYT+VLKACV S    S L+ GKEIHA +LRHGY   +H+MTTL+D+YA+FG V 
Sbjct: 176 PSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVS 235

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           YA  VF  M  KN VSWSAMIAC+A+N M  +ALELF+ M++E+HD  PNSVTMV+VLQA
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQA 295

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CA LAALEQGK+IHGYILRRGLDSILPV++AL+TMY RCG++ +GQ VFD+M  RDVVSW
Sbjct: 296 CAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSW 355

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           NSLIS YG+HG+G KAIQIF+ MI+ G SPS ISF++VLGACSHAGLVEEGK+LFESM  
Sbjct: 356 NSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLS 415

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           ++ I P +EHYACMVDLLGRAN+L+EA K+IED+  EPGP VWGSLLGSCRIHCNVELAE
Sbjct: 416 KYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAE 475

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
           RAS  LFELEP NAGNYVLLAD+YA A MW E K V +LLEARGLQK+PG S IEVKRK+
Sbjct: 476 RASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKV 535

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           YSFVSVDE +PQ E++HALL+ LS EMK +GYVPQT VVLYDLD EEKERIVLGHSEKLA
Sbjct: 536 YSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLA 595

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           VAFGLINT KGETIRI KNLRLCEDCH+ TKFISKFAN+EILVRDVNRFHHF++GVCSCG
Sbjct: 596 VAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCG 655

Query: 660 DYW 662
           DYW
Sbjct: 656 DYW 658

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Glycine max]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/663 (69%), Positives = 531/663 (80%), Gaps = 6/663 (0%)

Query: 1   MWALQSPQTPQLLRSPYHTNSIAHLPPK-PSSVCCCVSLNSSTTPTSLSSRNKNELIQSL 59
           MW LQ PQ  + + S  H    +H+  + P S    VSLN S    +  + N N+LIQSL
Sbjct: 1   MWVLQIPQFVRHVPSQSHLCYTSHVSSRVPVSF---VSLNPSANLINDINSNNNQLIQSL 57

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           CK GNL+QAL +L  EPNPTQ T+E L+ SC   NSLS  L+VH  L D+GFDQDPFL T
Sbjct: 58  CKGGNLKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLAT 117

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
           KLIN+Y    S+D A  VFD+TR RTIYVWNALFRAL + G G+E+L+LY +MN  GT  
Sbjct: 118 KLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTP- 176

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
            SDRFTYTYVLKACV S      L+ GKEIHA +LRHGY   +H+MTTL+D+YA+FG V 
Sbjct: 177 -SDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVS 235

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
           YA  VF  M  KN VSWSAMIAC+A+N M  +ALELF+ M+ E+ +  PNSVTMV++LQA
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQA 295

Query: 300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW 359
           CA LAALEQGK+IHGYILRR LDSILPV++AL+TMY RCG++ +GQ VFD+M KRDVVSW
Sbjct: 296 CAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSW 355

Query: 360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK 419
           NSLIS YG+HG+G KAIQIF+ MI+ GVSPS ISF++VLGACSHAGLVEEGK+LFESM  
Sbjct: 356 NSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLS 415

Query: 420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 479
           ++ I P +EHYACMVDLLGRAN+L EA K+IED+  EPGP VWGSLLGSCRIHCNVELAE
Sbjct: 416 KYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAE 475

Query: 480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKM 539
           RAS  LFELEP NAGNYVLLAD+YA A +W E K V +LLEARGLQK+PG S IEVKRK+
Sbjct: 476 RASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKV 535

Query: 540 YSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA 599
           YSFVSVDE +PQ E++HALL+ LS EMK +GYVPQT VVLYDLD EEKERIVLGHSEKLA
Sbjct: 536 YSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLA 595

Query: 600 VAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCG 659
           VAFGLINT+KGETIRI KNLRLCEDCH+ TKFISKFAN+EILVRDVNRFHHFR+GVCSCG
Sbjct: 596 VAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCG 655

Query: 660 DYW 662
           DYW
Sbjct: 656 DYW 658

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/657 (64%), Positives = 520/657 (79%), Gaps = 9/657 (1%)

Query: 8   QTPQLLR-SPYHTNSIAHLPPKPSSVCCCVSLNSSTTPT-SLSSRNKNELIQSLCKQGNL 65
           Q PQL+R  P+      + P + SS    VSLN+S  PT  + S N ++LIQSLC+ GNL
Sbjct: 5   QLPQLVRHGPFQ-----NYPCRYSSHVSFVSLNASGYPTKDIKSNNNDDLIQSLCRGGNL 59

Query: 66  RQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY 125
           +QA+ +L  EPNPT+ T+ELL+ SC   NSLSD ++VH  L  +G DQDP+L TKLIN+Y
Sbjct: 60  KQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMY 119

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
               SVD A  VFD+TR +TI+VWNA+FRAL +A RGE++L LY +MN  G  I S+RFT
Sbjct: 120 CDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIG--IPSNRFT 177

Query: 186 YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVF 245
           YTYVLKACV S      L+ GKEIHA +LRHGY G VH+MTTL+D+YARFG V YA  VF
Sbjct: 178 YTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVF 237

Query: 246 SQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA 305
             M  KN+VSWSAMIACYA+N M  +ALELF+ M++E+ D  PN +TMVSVLQACA+LAA
Sbjct: 238 GAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAA 297

Query: 306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISS 365
           LE GK++H Y+LRRGLDS LPV++ L+TMY RCG++  GQ VFD+M KRDV+SWNSLIS 
Sbjct: 298 LEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISI 357

Query: 366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP 425
           YG+HG G KAIQIF+ MI  GVSPS I+F++VL ACSHAGLVEE K+LFESM  ++ I P
Sbjct: 358 YGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHP 417

Query: 426 SVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL 485
            +EHYACMVD+LGRAN+L+EA ++I+++  +PGP VWGSLLGSCRIHCNVELAERAS  L
Sbjct: 418 RMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAML 477

Query: 486 FELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSV 545
           FELEP NAGNYVLL+ +YA + MW++V+RV++ LE+RGLQK+P  S IEVKRK+YS VS+
Sbjct: 478 FELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSI 537

Query: 546 DEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLI 605
           +E++PQ E+L A LI L  E+K +GYVPQT VV YDLD EEKERIVLGHS KLAVAFGLI
Sbjct: 538 EEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLI 597

Query: 606 NTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           NTSKGE IRI+ NLRLCEDCH+F KF+SKF N+EIL+RDVNRFH F++GVCSCGDYW
Sbjct: 598 NTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/659 (54%), Positives = 461/659 (69%), Gaps = 18/659 (2%)

Query: 15  SPYHTNSIAHLPPKP--------SSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLR 66
           SP+   SI HLP +P        S + C  SL  +++  S +  N + LIQ LC  G L 
Sbjct: 179 SPH--TSILHLPHRPFVFRRPRLSRLRCFASLAPASSGASPA--NDDHLIQMLCAHGRLA 234

Query: 67  QALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL-TDNGFDQDPFLVTKLINVY 125
           QA  +L   P PTQ TYE LLL+       + A  VH  L  D  F  DPFL T+LI  Y
Sbjct: 235 QATALLQGLPAPTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAY 294

Query: 126 SHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
           +   ++  AR VFD+   + I+VWNA+ +AL LA  GEE L     M   G  +  D ++
Sbjct: 295 AALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPV--DSYS 352

Query: 186 YTYVLKACVASSCG-FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFV 244
           Y + LKAC+A+S          +E+HA  +R GY    H+ TTLID YA+ G V YA  V
Sbjct: 353 YAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERV 412

Query: 245 FSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA 304
           F+ M  +N+VSWSAMI CYA+N    +A+++F+EM+    DL PNS+T+VSVL ACA + 
Sbjct: 413 FTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVN 472

Query: 305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR-DVVSWNSLI 363
           AL QGK++H YILRRG D ++ V++AL+ MY +CG LE G+ +F+ + +R +VVSWNSLI
Sbjct: 473 ALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLI 532

Query: 364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI 423
           S YG+HG+G +++Q+F+EMI  G+SP+ I+FVSVLGACSH GLVE+GK LFESM  E+ +
Sbjct: 533 SGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESM-VEYNV 591

Query: 424 RPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 483
            P  EHYACMVDLLGRA +L+EA ++I+ +RI+P P+VWGSLLG+CRIH +VE AE A  
Sbjct: 592 TPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACS 651

Query: 484 RLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFV 543
            LF+LEP NAGNYVLLAD+YA A + ++V  +K LLE   L+KVPG S IEVK+K+YSFV
Sbjct: 652 HLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFV 711

Query: 544 SVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFG 603
           SVD  +PQ E+L AL+     +MK +GYVP T+ VLYD++ EEKERI+LGHSEKLAVAFG
Sbjct: 712 SVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFG 771

Query: 604 LINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           LI T  GE IRITKNLRLCEDCHS TKFISKF ++EI+VRDVNRFHHFRNGVCSC DYW
Sbjct: 772 LIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Brachypodium distachyon]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/625 (56%), Positives = 447/625 (71%), Gaps = 6/625 (0%)

Query: 41  STTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDAL 100
           S++P +    N N LIQ+LC  G L +A  +L   P PTQ TYE LLL+       + A 
Sbjct: 33  SSSPGAAQPANANHLIQTLCANGRLARAAALLPGLPAPTQRTYESLLLAAARARDAALAA 92

Query: 101 NVHSHL-TDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
            VH  L  D  F  DPFL T+LI  Y+   ++  AR VFD+T  + I+VWNAL +AL LA
Sbjct: 93  AVHRRLEADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALA 152

Query: 160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK-HGKEIHASVLRHGY 218
             G+E L     M   G  +  D ++YT+ LKAC+A S   +      +E+HA  +R GY
Sbjct: 153 DHGDEALARLADMGRLGVPV--DSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGY 210

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE 278
               H+ TTLID YA+ G V YA  VF+ M  +NVVSWSAMI CYA+N    +A+ELF++
Sbjct: 211 ALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKD 270

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
           M+    DL PNS+T+VSVL ACA + AL  GK++H YILRRG DS++ V++AL+ MY RC
Sbjct: 271 MMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRC 330

Query: 339 GKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV 397
           G LE+G+ +F  +  +RDVVSWNSLIS YG+HG+G +A+Q+F+EMI+ G SPS I+F+SV
Sbjct: 331 GCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISV 390

Query: 398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP 457
           LGACSHAGLV EGKMLFESM  E+ + P  EHYACMVDLLGRA +L+EA ++I  + IEP
Sbjct: 391 LGACSHAGLVNEGKMLFESM-VEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEP 449

Query: 458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
            P+VWG+LLG+CRIH +VE AE A   LF+LEP NAGNYVLLAD+YA A + ++V  +K 
Sbjct: 450 SPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKE 509

Query: 518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
           LLE   L+KV G S IEVK+K++SF SVD  +P  EQL AL+    A+MK +GYVP T +
Sbjct: 510 LLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGI 569

Query: 578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
           VLYD++ EEKERI++GHSEKLAVAFGLINT  GE IRITKNLRLCEDCHS TKFISKF  
Sbjct: 570 VLYDIEGEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTE 629

Query: 638 KEILVRDVNRFHHFRNGVCSCGDYW 662
           +EI+VRDVNRFHHFR+GVCSCGDYW
Sbjct: 630 REIVVRDVNRFHHFRDGVCSCGDYW 654

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	662
TAIR|locus:2102852	657	CRR2 "AT3G46790" [Arabidopsis	0.981	0.989	0.714	6.2e-252
TAIR|locus:2118964	823	EMB2758 "embryo defective 2758	0.910	0.732	0.396	9.2e-123
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.913	0.679	0.387	2e-118
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.854	0.649	0.404	8.8e-118
TAIR|locus:2091546	628	AT3G13770 [Arabidopsis thalian	0.904	0.953	0.372	1.1e-117
TAIR|locus:4010713776	659	AT3G26782 [Arabidopsis thalian	0.912	0.916	0.378	3.8e-117
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.907	0.742	0.379	2.7e-116
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.833	0.696	0.396	4.2e-115
TAIR|locus:2115130	691	AT4G37170 "AT4G37170" [Arabido	0.808	0.774	0.380	3e-110
TAIR|locus:2077878	685	AT3G08820 "AT3G08820" [Arabido	0.904	0.874	0.372	7e-109

TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)]

 Score = 2426 (859.1 bits), Expect = 6.2e-252, P = 6.2e-252
 Identities = 467/654 (71%), Positives = 530/654 (81%)

Query:    10 PQLLRSPYHT-NSIAHLPPKPXXXXXXXXXXXXXXXXXXXXRNKNELIQSLCKQGNLRQA 68
             PQ+++  YHT N +   P KP                     N N+LIQSLCK+G L+QA
Sbjct:     7 PQVIQPTYHTVNFLPRSPLKPPSCSVALNNPSISSGAGAKISN-NQLIQSLCKEGKLKQA 65

Query:    69 LDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF 128
             + VLS E +P+Q TYELL+L C H +SLSDAL VH H+ DNG DQDPFL TKLI +YS  
Sbjct:    66 IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query:   129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY 188
              SVD AR VFDKTR+RTIYVWNALFRALTLAG GEEVL LY +MN  G  + SDRFTYTY
Sbjct:   126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG--VESDRFTYTY 183

Query:   189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM 248
             VLKACVAS C  + L  GKEIHA + R GY+  V+IMTTL+DMYARFGCV YA +VF  M
Sbjct:   184 VLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGM 243

Query:   249 AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQ 308
              V+NVVSWSAMIACYA+NG AFEAL  FREM+ E+ D  PNSVTMVSV          EQ
Sbjct:   244 PVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303

Query:   309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV 368
             GK+IHGYILRRGLDSILPV+SALVTMY RCGKLE+GQ VFD M  RDVVSWNSLISSYGV
Sbjct:   304 GKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGV 363

Query:   369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE 428
             HGYG KAIQIF+EM+ +G SP+P++FVSVLGACSH GLVEEGK LFE+M ++H I+P +E
Sbjct:   364 HGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIE 423

Query:   429 HYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL 488
             HYACMVDLLGRAN+L+EAAK+++D+R EPGPKVWGSLLGSCRIH NVELAERAS+RLF L
Sbjct:   424 HYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFAL 483

Query:   489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEF 548
             EP NAGNYVLLAD+YA A MWDEVKRVK+LLE RGLQK+PGR  +EV+RKMYSFVSVDEF
Sbjct:   484 EPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEF 543

Query:   549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTS 608
             +P  EQ+HA L+ L+ +MKEKGY+PQTK VLY+L+ EEKERIVLGHSEKLA+AFGLINTS
Sbjct:   544 NPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTS 603

Query:   609 KGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             KGE IRITKNLRLCEDCH FTKFISKF  KEILVRDVNRFH F+NGVCSCGDYW
Sbjct:   604 KGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657

GO:0009507 "chloroplast" evidence=ISS

GO:0031425 "chloroplast RNA processing" evidence=IMP

GO:0031426 "polycistronic mRNA processing" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 242/611 (39%), Positives = 376/611 (61%)

Query:    53 NELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFD 112
             N +I   C+ GN ++AL + +        T   LL +CT     +  + +HS+   +G +
Sbjct:   220 NAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 279

Query:   113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRM 172
              + F+  KLI++Y+ F  + D + VFD+   R +  WN++ +A  L  +    + L++ M
Sbjct:   280 SELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM 339

Query:   173 NGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTLIDM 231
               +   I+ D    T +  A + S  G   ++  + +    LR G +   + I   ++ M
Sbjct:   340 RLSR--IQPD--CLTLISLASILSQLGD--IRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query:   232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV 291
             YA+ G V  A  VF+ +   +V+SW+ +I+ YA+NG A EA+E++  M  E  ++  N  
Sbjct:   394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM-EEEGEIAANQG 452

Query:   292 TMVSVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM 351
             T VSV           QG  +HG +L+ GL   + VV++L  MY +CG+LE    +F  +
Sbjct:   453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512

Query:   352 DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK 411
              + + V WN+LI+ +G HG+G KA+ +FKEM+  GV P  I+FV++L ACSH+GLV+EG+
Sbjct:   513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572

Query:   412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI 471
               FE M+ ++ I PS++HY CMVD+ GRA +LE A K I+ + ++P   +WG+LL +CR+
Sbjct:   573 WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRV 632

Query:   472 HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRS 531
             H NV+L + AS+ LFE+EP + G +VLL+++YA+A  W+ V  ++ +   +GL+K PG S
Sbjct:   633 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 692

Query:   532 RIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV 591
              +EV  K+  F + ++ HP +E+++  L  L A++K  GYVP  + VL D++ +EKE I+
Sbjct:   693 SMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHIL 752

Query:   592 LGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
             + HSE+LA+AF LI T    TIRI KNLR+C DCHS TKFISK   +EI+VRD NRFHHF
Sbjct:   753 MSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHF 812

Query:   652 RNGVCSCGDYW 662
             +NGVCSCGDYW
Sbjct:   813 KNGVCSCGDYW 823

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 242/625 (38%), Positives = 384/625 (61%)

Query:    53 NELIQSLCKQGNLRQALDVLS---IEP-NPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
             N ++ SLC+   L +AL+ L    +E   P + T   +L +C+H   L     +H++   
Sbjct:   271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330

Query:   109 NG-FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLE 167
             NG  D++ F+ + L+++Y +   V   R VFD    R I +WNA+    +     +E L 
Sbjct:   331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 390

Query:   168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTT 227
             L+  M  +  G+ ++  T   V+ ACV S   FS     + IH  V++ G +    +  T
Sbjct:   391 LFIGMEESA-GLLANSTTMAGVVPACVRSGA-FS---RKEAIHGFVVKRGLDRDRFVQNT 445

Query:   228 LIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMI-MESH-- 284
             L+DMY+R G +  A  +F +M  +++V+W+ MI  Y  +    +AL L  +M  +E    
Sbjct:   446 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505

Query:   285 ------DLCPNSVTMVSVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
                    L PNS+T++++           +GK IH Y ++  L + + V SALV MYA+C
Sbjct:   506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKC 565

Query:   339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
             G L++ + VFD + +++V++WN +I +YG+HG G +AI + + M+  GV P+ ++F+SV 
Sbjct:   566 GCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVF 625

Query:   399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP 457
              ACSH+G+V+EG  +F  M+ ++ + PS +HYAC+VDLLGRA +++EA +++  + R   
Sbjct:   626 AACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFN 685

Query:   458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR 517
                 W SLLG+ RIH N+E+ E A++ L +LEP  A +YVLLA++Y++A +WD+   V+R
Sbjct:   686 KAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRR 745

Query:   518 LLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKV 577
              ++ +G++K PG S IE   +++ FV+ D  HPQ E+L   L  L   M+++GYVP T  
Sbjct:   746 NMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSC 805

Query:   578 VLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFAN 637
             VL++++ +EKE ++ GHSEKLA+AFG++NTS G  IR+ KNLR+C DCH  TKFISK  +
Sbjct:   806 VLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVD 865

Query:   638 KEILVRDVNRFHHFRNGVCSCGDYW 662
             +EI++RDV RFH F+NG CSCGDYW
Sbjct:   866 REIILRDVRRFHRFKNGTCSCGDYW 890

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 232/573 (40%), Positives = 346/573 (60%)

Query:    90 CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
             C     +S    VHS      F ++      L+++YS    +D A+ VF +   R++  +
Sbjct:   306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 365

Query:   150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
              ++       G   E ++L+  M   G  I  D +T T VL  C      + LL  GK +
Sbjct:   366 TSMIAGYAREGLAGEAVKLFEEMEEEG--ISPDVYTVTAVLNCCAR----YRLLDEGKRV 419

Query:   210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA 269
             H  +  +     + +   L+DMYA+ G +  A  VFS+M VK+++SW+ +I  Y++N  A
Sbjct:   420 HEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYA 479

Query:   270 FEALELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVS 329
              EAL LF  +++E     P+  T+  V          ++G+ IHGYI+R G  S   V +
Sbjct:   480 NEALSLFN-LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538

Query:   330 ALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
             +LV MYA+CG L L   +FD +  +D+VSW  +I+ YG+HG+G +AI +F +M   G+  
Sbjct:   539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598

Query:   390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKI 449
               ISFVS+L ACSH+GLV+EG   F  MR E  I P+VEHYAC+VD+L R   L +A + 
Sbjct:   599 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 658

Query:   450 IEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW 509
             IE++ I P   +WG+LL  CRIH +V+LAE+ ++++FELEP N G YVL+A++YA A+ W
Sbjct:   659 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 718

Query:   510 DEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK 569
             ++VKR+++ +  RGL+K PG S IE+K ++  FV+ D  +P+ E + A L  + A M E+
Sbjct:   719 EQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE 778

Query:   570 GYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFT 629
             GY P TK  L D +  EKE  + GHSEKLA+A G+I++  G+ IR+TKNLR+C DCH   
Sbjct:   779 GYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMA 838

Query:   630 KFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
             KF+SK   +EI++RD NRFH F++G CSC  +W
Sbjct:   839 KFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 227/610 (37%), Positives = 368/610 (60%)

Query:    56 IQSLCKQGNLRQAL-DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD 114
             I  LC  G L++AL ++  + P    H Y+ LL +C    +L D   VH+H+    +   
Sbjct:    27 ISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPA 86

Query:   115 PFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG 174
              +L T+L+  Y   D ++DAR V D+   + +  W A+    +  G   E L ++  M  
Sbjct:    87 TYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMR 146

Query:   175 TGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR 234
             +  G + + FT+  VL +C+ +S G  L   GK+IH  +++  Y+  + + ++L+DMYA+
Sbjct:   147 SD-G-KPNEFTFATVLTSCIRAS-GLGL---GKQIHGLIVKWNYDSHIFVGSSLLDMYAK 200

Query:   235 FGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV 294
              G +  A  +F  +  ++VVS +A+IA YA+ G+  EALE+F  +   S  + PN VT  
Sbjct:   201 AGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL--HSEGMSPNYVTYA 258

Query:   295 SVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR 354
             S+          + GK  H ++LRR L     + ++L+ MY++CG L   + +FD+M +R
Sbjct:   259 SLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318

Query:   355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKML 413
               +SWN+++  Y  HG G + +++F+ M     V P  ++ ++VL  CSH  + + G  +
Sbjct:   319 TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNI 378

Query:   414 FESM-RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 472
             F+ M   E+  +P  EHY C+VD+LGRA +++EA + I+ +  +P   V GSLLG+CR+H
Sbjct:   379 FDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVH 438

Query:   473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR 532
              +V++ E   +RL E+EP NAGNYV+L+++YA+A  W +V  V+ ++  + + K PGRS 
Sbjct:   439 LSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSW 498

Query:   533 IEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVL 592
             I+ ++ ++ F + D  HP+ E++ A +  +S +MK+ GYVP    VLYD+D E+KE+++L
Sbjct:   499 IQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLL 558

Query:   593 GHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFR 652
             GHSEKLA+ FGLI T +G  IR+ KNLR+C DCH+F K  SK   +E+ +RD NRFH   
Sbjct:   559 GHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIV 618

Query:   653 NGVCSCGDYW 662
             +G+CSCGDYW
Sbjct:   619 DGICSCGDYW 628

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)]

 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 235/621 (37%), Positives = 374/621 (60%)

Query:    53 NELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
             N +I  L + G+  +AL   S    +   PT+ ++   + +C+    +      H     
Sbjct:    45 NSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFV 104

Query:   109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              G+  D F+ + LI +YS    ++DAR VFD+  +R I  W ++ R   L G   + + L
Sbjct:   105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query:   169 YRRM----NGTGTGIRSDRFTYTYVLKACV-ASSCGFSLLKHGKEIHASVLRHGYNGIVH 223
             ++ +    N     +  D      V+ AC    + G +     + IH+ V++ G++  V 
Sbjct:   165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT-----ESIHSFVIKRGFDRGVS 219

Query:   224 IMTTLIDMYARFG--CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIM 281
             +  TL+D YA+ G   V  A  +F Q+  K+ VS++++++ YA++GM+ EA E+FR ++ 
Sbjct:   220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLV- 278

Query:   282 ESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL 341
             ++  +  N++T+ +V            GK IH  ++R GL+  + V ++++ MY +CG++
Sbjct:   279 KNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRV 338

Query:   342 ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC 401
             E  +  FD M  ++V SW ++I+ YG+HG+  KA+++F  MI  GV P+ I+FVSVL AC
Sbjct:   339 ETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query:   402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV 461
             SHAGL  EG   F +M+    + P +EHY CMVDLLGRA  L++A  +I+ ++++P   +
Sbjct:   399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query:   462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA 521
             W SLL +CRIH NVELAE +  RLFEL+ +N G Y+LL+ +YA A  W +V+RV+ +++ 
Sbjct:   459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query:   522 RGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYD 581
             RGL K PG S +E+  +++ F+  DE HPQ E+++  L  L+ ++ E GYV  T  V +D
Sbjct:   519 RGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHD 578

Query:   582 LDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEIL 641
             +D EEKE  +  HSEKLA+AFG++NT  G T+ + KNLR+C DCH+  K ISK  ++E +
Sbjct:   579 VDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFV 638

Query:   642 VRDVNRFHHFRNGVCSCGDYW 662
             VRD  RFHHF++G CSCGDYW
Sbjct:   639 VRDAKRFHHFKDGGCSCGDYW 659

GO:0005739 "mitochondrion" evidence=ISM;IDA

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
 Identities = 233/614 (37%), Positives = 371/614 (60%)

Query:    53 NELIQSLCKQGNLRQALDVLS--IEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
             N ++    + G  R AL+++    E N  P+  T   +L + +    +S    +H +   
Sbjct:   205 NTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMR 264

Query:   109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
             +GFD    + T L+++Y+   S++ AR +FD    R +  WN++  A       +E + +
Sbjct:   265 SGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLI 324

Query:   169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
             +++M     G++    +    L AC  +  G   L+ G+ IH   +  G +  V ++ +L
Sbjct:   325 FQKM--LDEGVKPTDVSVMGALHAC--ADLGD--LERGRFIHKLSVELGLDRNVSVVNSL 378

Query:   229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
             I MY +   V  A  +F ++  + +VSW+AMI  +A+NG   +AL  F +M   S  + P
Sbjct:   379 ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM--RSRTVKP 436

Query:   289 NSVTMVSVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
             ++ T VSV             K IHG ++R  LD  + V +ALV MYA+CG + + + +F
Sbjct:   437 DTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIF 496

Query:   349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
             D M +R V +WN++I  YG HG+G  A+++F+EM    + P+ ++F+SV+ ACSH+GLVE
Sbjct:   497 DMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVE 556

Query:   409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS 468
              G   F  M++ + I  S++HY  MVDLLGRA +L EA   I  + ++P   V+G++LG+
Sbjct:   557 AGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616

Query:   469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP 528
             C+IH NV  AE+A++RLFEL P + G +VLLA++Y AA MW++V +V+  +  +GL+K P
Sbjct:   617 CQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP 676

Query:   529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKE 588
             G S +E+K +++SF S    HP  ++++A L  L   +KE GYVP T +VL  ++ + KE
Sbjct:   677 GCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKE 735

Query:   589 RIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRF 648
             +++  HSEKLA++FGL+NT+ G TI + KNLR+C DCH+ TK+IS    +EI+VRD+ RF
Sbjct:   736 QLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRF 795

Query:   649 HHFRNGVCSCGDYW 662
             HHF+NG CSCGDYW
Sbjct:   796 HHFKNGACSCGDYW 809

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
 Identities = 223/563 (39%), Positives = 341/563 (60%)

Query:   100 LNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLA 159
             + +HS  T  G     +++T  I++YS    +     +F + R+  I  +NA+    T  
Sbjct:   241 MQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSN 300

Query:   160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN 219
             G  E  L L++ +  +G  +RS        L + V  S G  +L +   IH   L+  + 
Sbjct:   301 GETELSLSLFKELMLSGARLRSS------TLVSLVPVS-GHLMLIYA--IHGYCLKSNFL 351

Query:   220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM 279
                 + T L  +Y++   +  A  +F +   K++ SW+AMI+ Y +NG+  +A+ LFREM
Sbjct:   352 SHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM 411

Query:   280 IMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARCG 339
               +  +  PN VT+  +            GK +H  +     +S + V +AL+ MYA+CG
Sbjct:   412 --QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCG 469

Query:   340 KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG 399
              +   + +FD M K++ V+WN++IS YG+HG G +A+ IF EM+  G++P+P++F+ VL 
Sbjct:   470 SIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLY 529

Query:   400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
             ACSHAGLV+EG  +F SM   +   PSV+HYACMVD+LGRA  L+ A + IE + IEPG 
Sbjct:   530 ACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGS 589

Query:   460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL 519
              VW +LLG+CRIH +  LA   S++LFEL+P N G +VLL+++++A   + +   V++  
Sbjct:   590 SVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTA 649

Query:   520 EARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL 579
             + R L K PG + IE+    + F S D+ HPQ ++++  L  L  +M+E GY P+T++ L
Sbjct:   650 KKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELAL 709

Query:   580 YDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKE 639
             +D++ EE+E +V  HSE+LA+AFGLI T  G  IRI KNLR+C DCH+ TK ISK   + 
Sbjct:   710 HDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERV 769

Query:   640 ILVRDVNRFHHFRNGVCSCGDYW 662
             I+VRD NRFHHF++GVCSCGDYW
Sbjct:   770 IVVRDANRFHHFKDGVCSCGDYW 792

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
 Identities = 206/542 (38%), Positives = 317/542 (58%)

Query:   121 LINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR 180
             ++N Y+    +++AR +FD+   +  Y W A+        + EE L LY  M       R
Sbjct:   157 MVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS-R 215

Query:   181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMY 240
              + FT +  + A  A  C    ++ GKEIH  ++R G +    + ++L+DMY + GC+  
Sbjct:   216 PNIFTVSIAVAAAAAVKC----IRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDE 271

Query:   241 AGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVXXXX 300
             A  +F ++  K+VVSW++MI  Y ++    E   LF E++       PN  T   V    
Sbjct:   272 ARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCER--PNEYTFAGVLNAC 329

Query:   301 XXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN 360
                   E GK +HGY+ R G D      S+LV MY +CG +E  + V D   K D+VSW 
Sbjct:   330 ADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWT 389

Query:   361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 420
             SLI     +G   +A++ F  ++  G  P  ++FV+VL AC+HAGLVE+G   F S+ ++
Sbjct:   390 SLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEK 449

Query:   421 HMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 480
             H +  + +HY C+VDLL R+ + E+   +I ++ ++P   +W S+LG C  + N++LAE 
Sbjct:   450 HRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEE 509

Query:   481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMY 540
             A++ LF++EP N   YV +A++YAAA  W+E  ++++ ++  G+ K PG S  E+KRK +
Sbjct:   510 AAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRH 569

Query:   541 SFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAV 600
              F++ D  HP + Q+   L  L  +MKE+GYVP T +VL+D++ E+KE  ++ HSEKLAV
Sbjct:   570 VFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAV 629

Query:   601 AFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGD 660
             AF +++T +G  I++ KNLR C DCH   KFIS    ++I VRD  RFH F NG CSCGD
Sbjct:   630 AFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGD 689

Query:   661 YW 662
             YW
Sbjct:   690 YW 691

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
 Identities = 230/617 (37%), Positives = 358/617 (58%)

Query:    53 NELIQSLCKQGNLRQALDV-LSIEPNPTQ-H--TYELLLLSCTHHNSLSDALNVHSHLTD 108
             N LI          + LD+ LSI  +    H  T+ L+L +CT  +S    +++HS +  
Sbjct:    80 NSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVK 139

Query:   109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
              GF+ D   +T L+++YS    ++DA  +FD+   R++  W ALF   T +GR  E ++L
Sbjct:   140 CGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDL 199

Query:   169 YRRMNGTGTGIRSDRFTYTYVLKACVASS---CGFSLLKHGKEIHASVLRHGYNGIVHIM 225
             +++M     G++ D +    VL ACV       G  ++K+ +E+         N  V   
Sbjct:   200 FKKM--VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQK-----NSFVR-- 250

Query:   226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD 285
             TTL+++YA+ G +  A  VF  M  K++V+WS MI  YA N    E +ELF +M+ E+  
Sbjct:   251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQEN-- 308

Query:   286 LCPNSVTMVSVXXXXXXXXXXEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ 345
             L P+  ++V            + G+     I R    + L + +AL+ MYA+CG +  G 
Sbjct:   309 LKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGF 368

Query:   346 CVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG 405
              VF  M ++D+V  N+ IS    +G+   +  +F +    G+SP   +F+ +L  C HAG
Sbjct:   369 EVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428

Query:   406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSL 465
             L+++G   F ++   + ++ +VEHY CMVDL GRA  L++A ++I D+ + P   VWG+L
Sbjct:   429 LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGAL 488

Query:   466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ 525
             L  CR+  + +LAE   K L  LEP NAGNYV L+++Y+    WDE   V+ ++  +G++
Sbjct:   489 LSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMK 548

Query:   526 KVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAE 585
             K+PG S IE++ K++ F++ D+ HP  ++++A L +L  EM+  G+VP T+ V +D++ E
Sbjct:   549 KIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEE 608

Query:   586 EKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDV 645
             EKER++  HSEKLAVA GLI+T  G+ IR+ KNLR+C DCH   K ISK   +EI+VRD 
Sbjct:   609 EKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668

Query:   646 NRFHHFRNGVCSCGDYW 662
             NRFH F NG CSC DYW
Sbjct:   669 NRFHCFTNGSCSCNDYW 685

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STF3	PP265_ARATH	No assigned EC number	0.7328	0.9803	0.9878	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	662
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-161
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-156
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-65
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-56
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	4e-21
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-18
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
pfam01535	31	pfam01535, PPR, PPR repeat	4e-06
pfam01535	31	pfam01535, PPR, PPR repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  485 bits (1251), Expect = e-161
 Identities = 231/603 (38%), Positives = 343/603 (56%), Gaps = 16/603 (2%)

Query: 60  CKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVT 119
           C +G L     +  +  +P   T   ++ +C           +H ++   GF  D  +  
Sbjct: 269 CLEG-LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327

Query: 120 KLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI 179
            LI +Y    S  +A  VF +   +    W A+       G  ++ LE Y  M       
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-- 385

Query: 180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM 239
             D  T   VL AC         L  G ++H    R G    V +   LI+MY++  C+ 
Sbjct: 386 SPDEITIASVLSACA----CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441

Query: 240 YAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA 299
            A  VF  +  K+V+SW+++IA    N   FEAL  FR+M++    L PNSVT+++ L A
Sbjct: 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNSVTLIAALSA 498

Query: 300 CAALAALEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV 357
           CA + AL  GK IH ++LR G   D  LP  +AL+ +Y RCG++      F+   ++DVV
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLP--NALLDLYVRCGRMNYAWNQFN-SHEKDVV 555

Query: 358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 417
           SWN L++ Y  HG G  A+++F  M+  GV+P  ++F+S+L ACS +G+V +G   F SM
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615

Query: 418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 477
            +++ I P+++HYAC+VDLLGRA KL EA   I  + I P P VWG+LL +CRIH +VEL
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675

Query: 478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKR 537
            E A++ +FEL+P + G Y+LL ++YA A  WDEV RV++ +   GL   PG S +EVK 
Sbjct: 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735

Query: 538 KMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEK 597
           K+++F++ DE HPQ ++++ +L     +MK  G        + +++  + + I  GHSE+
Sbjct: 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDD-IFCGHSER 794

Query: 598 LAVAFGLINTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCS 657
           LA+AFGLINT  G  I +TKNL +CE+CH+  KFISK   +EI VRD  +FHHF++G CS
Sbjct: 795 LAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECS 854

Query: 658 CGD 660
           CGD
Sbjct: 855 CGD 857

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  467 bits (1204), Expect = e-156
 Identities = 228/646 (35%), Positives = 369/646 (57%), Gaps = 17/646 (2%)

Query: 25  LPPKPSSVCCCVSLNSSTTPTSLSSRNKNEL---IQSLCKQGNLRQALDVLSI-EPNPT- 79
           L P+P  +    S   +    +   ++   L   I+ L   G  R+AL++  I E     
Sbjct: 61  LKPEPIRIEVSES-KDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPF 119

Query: 80  ---QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARH 136
                TY+ L+ +C    S+     V+ H+  +GF+ D +++ +++ ++     + DAR 
Sbjct: 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179

Query: 137 VFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS 196
           +FD+   R +  W  +   L  AG   E   L+R M   G    SD    T+V+   + +
Sbjct: 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG----SDAEPRTFVV--MLRA 233

Query: 197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSW 256
           S G    + G+++H  VL+ G  G   +   LIDMY++ G +  A  VF  M  K  V+W
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW 293

Query: 257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI 316
           ++M+A YA +G + EAL L+ EM      +  +  T   +++  + LA LE  K  H  +
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSI--DQFTFSIMIRIFSRLALLEHAKQAHAGL 351

Query: 317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAI 376
           +R G    +   +ALV +Y++ G++E  + VFD M +++++SWN+LI+ YG HG G KA+
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411

Query: 377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL 436
           ++F+ MI  GV+P+ ++F++VL AC ++GL E+G  +F+SM + H I+P   HYACM++L
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY 496
           LGR   L+EA  +I     +P   +W +LL +CRIH N+EL   A+++L+ + P    NY
Sbjct: 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531

Query: 497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLH 556
           V+L ++Y ++    E  +V   L+ +GL   P  + IEVK++ +SF S D  HPQ  +++
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591

Query: 557 ALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRIT 616
             L  L  E+ E GYV +   +L D+D +E++     HSEKLA+AFGLINTS+   ++IT
Sbjct: 592 QKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQIT 651

Query: 617 KNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW 662
           ++ R+C+DCH   KFI+    +EI+VRD +RFHHF+ G CSCGDYW
Sbjct: 652 QSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  229 bits (585), Expect = 6e-65
 Identities = 123/389 (31%), Positives = 193/389 (49%), Gaps = 12/389 (3%)

Query: 40  SSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNS 95
           S    +S S+ + N  +++LC  G L QAL +L     +     +  Y  L   C    +
Sbjct: 42  SVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA 101

Query: 96  LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRA 155
           + +   V S    +       L   +++++  F  +  A +VF K   R ++ WN L   
Sbjct: 102 VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161

Query: 156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR 215
              AG  +E L LY RM     G+R D +T+  VL+ C     G   L  G+E+HA V+R
Sbjct: 162 YAKAGYFDEALCLYHRM--LWAGVRPDVYTFPCVLRTC----GGIPDLARGREVHAHVVR 215

Query: 216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALEL 275
            G+   V ++  LI MY + G V+ A  VF +M  ++ +SW+AMI+ Y  NG   E LEL
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275

Query: 276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY 335
           F  M   S D  P+ +T+ SV+ AC  L     G+ +HGY+++ G    + V ++L+ MY
Sbjct: 276 FFTMRELSVD--PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333

Query: 336 ARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFV 395
              G     + VF  M+ +D VSW ++IS Y  +G   KA++ +  M    VSP  I+  
Sbjct: 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393

Query: 396 SVLGACSHAGLVEEGKMLFESMRKEHMIR 424
           SVL AC+  G ++ G  L E   ++ +I 
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLIS 422

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  205 bits (523), Expect = 2e-56
 Identities = 116/363 (31%), Positives = 188/363 (51%), Gaps = 13/363 (3%)

Query: 53  NELIQSLCKQGNLRQALD----VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTD 108
           N L+    K G   +AL     +L     P  +T+  +L +C     L+    VH+H+  
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215

Query: 109 NGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL 168
            GF+ D  +V  LI +Y     V  AR VFD+  RR    WNA+       G   E LEL
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275

Query: 169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL 228
           +  M      +  D  T T V+ AC          + G+E+H  V++ G+   V +  +L
Sbjct: 276 FFTM--RELSVDPDLMTITSVISACEL----LGDERLGREMHGYVVKTGFAVDVSVCNSL 329

Query: 229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP 288
           I MY   G    A  VFS+M  K+ VSW+AMI+ Y +NG+  +ALE +   +ME  ++ P
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA--LMEQDNVSP 387

Query: 289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF 348
           + +T+ SVL ACA L  L+ G  +H    R+GL S + V +AL+ MY++C  ++    VF
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447

Query: 349 DHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE 408
            ++ ++DV+SW S+I+   ++    +A+  F++M+   + P+ ++ ++ L AC+  G + 
Sbjct: 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALM 506

Query: 409 EGK 411
            GK
Sbjct: 507 CGK 509

Length = 857

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 89.0 bits (221), Expect = 4e-21
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 19/121 (15%)

Query: 539 MYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIV------L 592
               +S D  HP           L   +K +G VP+TK + +D+DAEE            
Sbjct: 8   GKKTLSGDGSHPT------SKEELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLA 61

Query: 593 GHSEKLAVAFGLINTSKGETIRITKNL-RLCEDCHSFTKFISKFANKEILVRDVNRFHHF 651
            H+EK A+A+GL+ T      RI K L R+C DCH F ++I+K+  +EI+VRD +RFHHF
Sbjct: 62  SHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHF 115

Query: 652 R 652
           +
Sbjct: 116 K 116

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 88.0 bits (218), Expect = 6e-18
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 36/308 (11%)

Query: 164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGK-----EIHASVLRHGY 218
            VL L +       G+++D   YT ++  C          K GK     E+   ++  G 
Sbjct: 458 RVLRLVQ-----EAGLKADCKLYTTLISTCA---------KSGKVDAMFEVFHEMVNAGV 503

Query: 219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV----VSWSAMIACYARNGMAFEALE 274
              VH    LID  AR G V  A   +  M  KNV    V ++A+I+   ++G    A +
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

Query: 275 LFREMIMESHDLCPNSVTMVSVLQACA----ALAALEQGKMIHGYILRRGLDSILPVVSA 330
           +  EM  E+H + P+ +T+ ++++ACA       A E  +MIH Y     +     V + 
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY----NIKGTPEVYTI 619

Query: 331 LVTMYARCGKLELGQCVFDHMDKRDV----VSWNSLISSYGVHGYGGKAIQIFKEMIYHG 386
            V   ++ G  +    ++D M K+ V    V +++L+   G  G   KA +I ++    G
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679

Query: 387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA 446
           +    +S+ S++GACS+A   ++   L+E ++   + RP+V     ++  L   N+L +A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKA 738

Query: 447 AKIIEDLR 454
            +++ +++
Sbjct: 739 LEVLSEMK 746

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 65/281 (23%), Positives = 122/281 (43%), Gaps = 53/281 (18%)

Query: 226 TTLIDMYARFGCVMYAGFVFSQMAVK----NVVSWSAMIACYARNGM---AFEALELFRE 278
           TTLI   A+ G V     VF +M       NV ++ A+I   AR G    AF A      
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG---- 531

Query: 279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC 338
            IM S ++ P+ V   +++ AC    A++           R  D        L  M A  
Sbjct: 532 -IMRSKNVKPDRVVFNALISACGQSGAVD-----------RAFD-------VLAEMKAET 572

Query: 339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL 398
                      H    D ++  +L+ +    G   +A ++++ +  + +  +P  +   +
Sbjct: 573 -----------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621

Query: 399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR---I 455
            +CS  G  +    +++ M+K+  ++P    ++ +VD+ G A  L++A +I++D R   I
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680

Query: 456 EPGPKVWGSLLGSCRIHCNVELAERASK-----RLFELEPT 491
           + G   + SL+G+C    N +  ++A +     +  +L PT
Sbjct: 681 KLGTVSYSSLMGAC---SNAKNWKKALELYEDIKSIKLRPT 718

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA 301
            +VV+++ +I  Y + G   EAL+LF E  M+   + PN  T   ++    
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNE--MKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 56.4 bits (136), Expect = 4e-08
 Identities = 85/425 (20%), Positives = 150/425 (35%), Gaps = 90/425 (21%)

Query: 60  CK-QGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV 118
           CK Q  +++A     +  NPT  T+ +L+  C     +  AL V   + + G   D  L 
Sbjct: 416 CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY 475

Query: 119 TKLINVYSHFDSVDDARHVF---------------------------------------D 139
           T LI+  +    VD    VF                                        
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535

Query: 140 KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCG 199
           K  +    V+NAL  A   +G  +   ++   M      I  D  T   ++KAC      
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC----AN 591

Query: 200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNV----VS 255
              +   KE++  +  +   G   + T  ++  ++ G   +A  ++  M  K V    V 
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651

Query: 256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA----ALEQGKM 311
           +SA++      G   +A E+ ++       +   +V+  S++ AC+       ALE  + 
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQD--ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709

Query: 312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGY 371
           I    LR       P VS   TM A    L    C  + +                    
Sbjct: 710 IKSIKLR-------PTVS---TMNA----LITALCEGNQLP------------------- 736

Query: 372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA 431
             KA+++  EM   G+ P+ I++  +L A       + G  L    +++  I+P++    
Sbjct: 737 --KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCR 793

Query: 432 CMVDL 436
           C+  L
Sbjct: 794 CITGL 798

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH 403
           DVV++N+LI  Y   G   +A+++F EM   G+ P+  ++  ++     
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 254 VSWSAMIACYARNGMAFEALELFREMI 280
           V+++++I+ Y + G   EALELF+EM 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGV 387
           V++NSLIS Y   G   +A+++FKEM   GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS 290
           V+++ +I    + G   EALELF+EM      + P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMK--ERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 252 NVVSWSAMIACYARNGMAFEALELFREM 279
           +VV+++ +I    R G   EA+EL  EM
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS 390
           V++N+LI      G   +A+++FKEM   G+ P 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC 193
           +  +N L       G+ EE L+L+  M     GI+ + +TY+ ++   
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	662
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.98
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.87
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.77
PRK14574	822	hmsH outer membrane protein; Provisional	99.76
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.7
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.67
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.67
KOG2003	840	consensus TPR repeat-containing protein [General f	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.61
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.55
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.55
KOG2076	895	consensus RNA polymerase III transcription factor	99.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.49
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.47
KOG1126	638	consensus DNA-binding cell division cycle control	99.46
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.46
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.45
KOG2076	895	consensus RNA polymerase III transcription factor	99.45
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.43
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
KOG2003	840	consensus TPR repeat-containing protein [General f	99.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.41
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.4
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.38
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.38
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.35
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.33
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.33
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.31
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.31
PF13041	50	PPR_2: PPR repeat family	99.29
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.25
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.24
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.22
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.21
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.2
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.2
PF13041	50	PPR_2: PPR repeat family	99.19
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.19
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.17
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.1
PRK12370	553	invasion protein regulator; Provisional	99.07
PRK11189	296	lipoprotein NlpI; Provisional	99.06
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.05
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.05
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.05
PRK12370	553	invasion protein regulator; Provisional	99.04
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.0
PRK11189	296	lipoprotein NlpI; Provisional	98.96
KOG1129	478	consensus TPR repeat-containing protein [General f	98.96
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.95
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.92
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.91
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.9
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.89
KOG1129	478	consensus TPR repeat-containing protein [General f	98.86
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.8
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.8
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.79
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.78
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.76
KOG1125	579	consensus TPR repeat-containing protein [General f	98.75
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.73
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.72
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.68
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.66
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.66
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.65
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.65
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.61
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.61
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.58
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.56
PF12854	34	PPR_1: PPR repeat	98.56
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.56
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.54
PF12854	34	PPR_1: PPR repeat	98.53
PRK04841	903	transcriptional regulator MalT; Provisional	98.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.5
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.5
PRK04841	903	transcriptional regulator MalT; Provisional	98.45
PRK15359	144	type III secretion system chaperone protein SscB;	98.44
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.42
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.38
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.37
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.36
PLN02789	320	farnesyltranstransferase	98.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.34
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.29
PRK15359	144	type III secretion system chaperone protein SscB;	98.28
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.25
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.24
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.24
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.23
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.2
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.17
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.15
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.1
KOG1125	579	consensus TPR repeat-containing protein [General f	98.08
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.06
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.04
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.02
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.0
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.98
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.97
PLN02789	320	farnesyltranstransferase	97.94
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.92
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.88
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.84
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.81
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.77
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.76
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.73
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.71
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.71
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.6
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.59
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.57
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.57
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.57
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.49
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.47
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.45
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.44
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.42
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.4
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.34
PRK15331	165	chaperone protein SicA; Provisional	97.34
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.3
KOG0553	304	consensus TPR repeat-containing protein [General f	97.29
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.28
KOG0553	304	consensus TPR repeat-containing protein [General f	97.19
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.14
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.12
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.1
PF13371	73	TPR_9: Tetratricopeptide repeat	97.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.07
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.04
PF13431	34	TPR_17: Tetratricopeptide repeat	97.02
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.01
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.95
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.95
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.92
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.91
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.9
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.86
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.85
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.81
PF12688	120	TPR_5: Tetratrico peptide repeat	96.79
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.78
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.77
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.71
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.68
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.66
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.65
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.59
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.56
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.54
PF12688	120	TPR_5: Tetratrico peptide repeat	96.54
PRK10803	263	tol-pal system protein YbgF; Provisional	96.48
PF13371	73	TPR_9: Tetratricopeptide repeat	96.42
PF13428	44	TPR_14: Tetratricopeptide repeat	96.4
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.4
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.24
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.17
PRK10803	263	tol-pal system protein YbgF; Provisional	96.14
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.07
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.96
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.95
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.87
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.6
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.56
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.48
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.42
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.28
KOG3941	406	consensus Intermediate in Toll signal transduction	95.03
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.97
KOG1258	577	consensus mRNA processing protein [RNA processing	94.9
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.75
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.71
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.67
KOG4555	175	consensus TPR repeat-containing protein [Function	94.66
PF13512	142	TPR_18: Tetratricopeptide repeat	94.63
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.47
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.38
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.25
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.18
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.73
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.56
PRK11906	458	transcriptional regulator; Provisional	93.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.22
PRK11906	458	transcriptional regulator; Provisional	93.2
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.05
KOG1585	308	consensus Protein required for fusion of vesicles	92.94
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.84
PF13512	142	TPR_18: Tetratricopeptide repeat	92.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.44
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.33
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.22
KOG1585	308	consensus Protein required for fusion of vesicles	92.05
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.01
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.96
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.84
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.61
KOG4555	175	consensus TPR repeat-containing protein [Function	91.53
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.52
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.02
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.85
KOG3941	406	consensus Intermediate in Toll signal transduction	90.77
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.71
PRK15331	165	chaperone protein SicA; Provisional	90.53
PRK11619	644	lytic murein transglycosylase; Provisional	90.03
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.94
PRK09687	280	putative lyase; Provisional	89.87
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.77
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.27
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.09
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.89
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	88.87
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.78
KOG4234	271	consensus TPR repeat-containing protein [General f	88.53
PRK09687	280	putative lyase; Provisional	88.38
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.36
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	88.3
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	88.04
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.48
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.3
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.27
PF13428	44	TPR_14: Tetratricopeptide repeat	86.94
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	86.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.54
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	86.17
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	86.04
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.03
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.14
COG1747	711	Uncharacterized N-terminal domain of the transcrip	84.49
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	84.36
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.63
COG3947	361	Response regulator containing CheY-like receiver a	83.41
KOG4648	536	consensus Uncharacterized conserved protein, conta	82.81
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.49
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.24
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.52
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.46
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	81.43
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	81.26
PF13431	34	TPR_17: Tetratricopeptide repeat	80.54

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.6e-125  Score=1075.17  Aligned_cols=642  Identities=36%  Similarity=0.624  Sum_probs=628.8

Q ss_pred             cccccchHHHhhccc----cchhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh-
Q 006076            2 WALQSPQTPQLLRSP----YHTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS-   73 (662)
Q Consensus         2 ~~~~~h~~~~~~g~~----~~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-   73 (662)
                      .|+++|+.+++.|+.    +.|+||++|+   ++++|+++| ++|+++|+++     ||++|.+|+++|++++|+++|. 
T Consensus       205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf-~~m~~~d~~s-----~n~li~~~~~~g~~~eAl~lf~~  278 (857)
T PLN03077        205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF-DRMPRRDCIS-----WNAMISGYFENGECLEGLELFFT  278 (857)
T ss_pred             hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH-hcCCCCCcch-----hHHHHHHHHhCCCHHHHHHHHHH
Confidence            367899999999996    8999999999   999999999 9999998876     5669999999999999999998 


Q ss_pred             ---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHH
Q 006076           74 ---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN  150 (662)
Q Consensus        74 ---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~  150 (662)
                         .+..||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|+.+|+++||
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n  358 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT  358 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence               78999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076          151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID  230 (662)
Q Consensus       151 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  230 (662)
                      ++|.+|++.|++++|+++|++|.+.  |+.||..||++++.+|++.++    ++.|.++|+.+.+.|+.|+..++|+||+
T Consensus       359 ~li~~~~~~g~~~~A~~lf~~M~~~--g~~Pd~~t~~~ll~a~~~~g~----~~~a~~l~~~~~~~g~~~~~~~~n~Li~  432 (857)
T PLN03077        359 AMISGYEKNGLPDKALETYALMEQD--NVSPDEITIASVLSACACLGD----LDVGVKLHELAERKGLISYVVVANALIE  432 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHh--CCCCCceeHHHHHHHHhccch----HHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            9999999999999999999999999  999999999999999999999    9999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH
Q 006076          231 MYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK  310 (662)
Q Consensus       231 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~  310 (662)
                      +|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|  .. +++||..||+++|.+|++.|+++.++
T Consensus       433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m--~~-~~~pd~~t~~~lL~a~~~~g~l~~~~  509 (857)
T PLN03077        433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM--LL-TLKPNSVTLIAALSACARIGALMCGK  509 (857)
T ss_pred             HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH--Hh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence            9999999999999999999999999999999999999999999999999  54 69999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006076          311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS  390 (662)
Q Consensus       311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  390 (662)
                      ++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus       510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd  588 (857)
T PLN03077        510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD  588 (857)
T ss_pred             HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006076          391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR  470 (662)
Q Consensus       391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~  470 (662)
                      ..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|.
T Consensus       589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~  668 (857)
T PLN03077        589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR  668 (857)
T ss_pred             cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999987899999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCc
Q 006076          471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHP  550 (662)
Q Consensus       471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  550 (662)
                      .+|+.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|+||+|||++++++|.|++++.+||
T Consensus       669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~  748 (857)
T PLN03077        669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP  748 (857)
T ss_pred             HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHHHHHhhhhHHHHHHHhhcCCCCCCcEEEEecccccCCCcchhh
Q 006076          551 QFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLCEDCHSFTK  630 (662)
Q Consensus       551 ~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~i~~~~~l~~c~~~~~~~~  630 (662)
                      +.++||+++.+|..+|++.||.||+.+++ ++++++|+..+++||||||++||||++++|+||||+||||+|+|||+++|
T Consensus       749 ~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k  827 (857)
T PLN03077        749 QIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK  827 (857)
T ss_pred             chHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHH
Confidence            99999999999999999999999999888 55788999999999999999999999999999999999999999999999


Q ss_pred             hhhccccceEEEecCCccccccCcccCCCC
Q 006076          631 FISKFANKEILVRDVNRFHHFRNGVCSCGD  660 (662)
Q Consensus       631 ~~s~~~~~~~~~~d~~~~h~f~~g~csc~~  660 (662)
                      +||++.+|+|||||.+|||||+||+|||+|
T Consensus       828 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        828 FISKIVRREISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             HHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence            999999999999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.3e-123  Score=1032.91  Aligned_cols=605  Identities=36%  Similarity=0.641  Sum_probs=596.6

Q ss_pred             CChHHHHHHHHhCCCchHHHHHHh-----cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006076           50 RNKNELIQSLCKQGNLRQALDVLS-----IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV  124 (662)
Q Consensus        50 ~~~~~li~~~~~~g~~~~A~~~~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  124 (662)
                      .+|+++|.+|.+.|++++|+++|+     .+..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..+||.|+++
T Consensus        88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~  167 (697)
T PLN03081         88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM  167 (697)
T ss_pred             eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            358889999999999999999998     246799999999999999999999999999999999999999999999999


Q ss_pred             hhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchH
Q 006076          125 YSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK  204 (662)
Q Consensus       125 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~  204 (662)
                      |+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.  |+.||..||+.++.+|+..+.    ++
T Consensus       168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~--g~~p~~~t~~~ll~a~~~~~~----~~  241 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED--GSDAEPRTFVVMLRASAGLGS----AR  241 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCChhhHHHHHHHHhcCCc----HH
Confidence            999999999999999999999999999999999999999999999999999  999999999999999999999    99


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhC
Q 006076          205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESH  284 (662)
Q Consensus       205 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  284 (662)
                      .++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|  ...
T Consensus       242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M--~~~  319 (697)
T PLN03081        242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM--RDS  319 (697)
T ss_pred             HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH--HHc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999  899


Q ss_pred             CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHH
Q 006076          285 DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLIS  364 (662)
Q Consensus       285 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~  364 (662)
                      |+.||..||++++.+|++.|++++|+++|+.|.+.|+.||..++|+||++|+++|++++|.++|++|.+||+++||+||.
T Consensus       320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~  399 (697)
T PLN03081        320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA  399 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 006076          365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE  444 (662)
Q Consensus       365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  444 (662)
                      +|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|+++
T Consensus       400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~  479 (697)
T PLN03081        400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD  479 (697)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence            99999999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          445 EAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       445 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      +|.+++++|++.|+..+|++|+.+|+.+|+++.|..+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+
T Consensus       480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHHHHHhhhhHHHHHHHhh
Q 006076          525 QKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLAVAFGL  604 (662)
Q Consensus       525 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  604 (662)
                      ++.|++||+++++.+|.|++++..||+.++||+++.++..+|++.||.||+.++++++++++|+..+.+||||||++|||
T Consensus       560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l  639 (697)
T PLN03081        560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL  639 (697)
T ss_pred             ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcEEEEecccccCCCcchhhhhhccccceEEEecCCccccccCcccCCCCCC
Q 006076          605 INTSKGETIRITKNLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRNGVCSCGDYW  662 (662)
Q Consensus       605 ~~~~~~~~i~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~d~~~~h~f~~g~csc~~~~  662 (662)
                      +++++|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus       640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.5e-80  Score=704.58  Aligned_cols=621  Identities=25%  Similarity=0.328  Sum_probs=548.9

Q ss_pred             ccccchHHHhhccc----cchhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--
Q 006076            3 ALQSPQTPQLLRSP----YHTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--   73 (662)
Q Consensus         3 ~~~~h~~~~~~g~~----~~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--   73 (662)
                      |.++|.++++.|..    +.|+||++|+   ++++|.++| ++|+++|+++     ||++|++|++.|++++|+++|+  
T Consensus       105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f-~~m~~~d~~~-----~n~li~~~~~~g~~~~A~~~f~~M  178 (857)
T PLN03077        105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF-GKMPERDLFS-----WNVLVGGYAKAGYFDEALCLYHRM  178 (857)
T ss_pred             HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHH-hcCCCCCeeE-----HHHHHHHHHhCCCHHHHHHHHHHH
Confidence            56889999999975    8999999999   899999999 9999998776     5669999999999999999998  


Q ss_pred             --cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHH
Q 006076           74 --IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA  151 (662)
Q Consensus        74 --~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~  151 (662)
                        .+..||..||+.++++|+..+++..+.++|..+.+.|+.||..++|+||.+|+++|++++|.++|++|+++|+++||+
T Consensus       179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~  258 (857)
T PLN03077        179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA  258 (857)
T ss_pred             HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHH
Confidence              689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076          152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM  231 (662)
Q Consensus       152 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  231 (662)
                      ||.+|++.|++++|+++|++|...  |+.||..||+.++.+|++.++    ++.|.++|..+.+.|+.||..+||+|+++
T Consensus       259 li~~~~~~g~~~eAl~lf~~M~~~--g~~Pd~~ty~~ll~a~~~~g~----~~~a~~l~~~~~~~g~~~d~~~~n~Li~~  332 (857)
T PLN03077        259 MISGYFENGECLEGLELFFTMREL--SVDPDLMTITSVISACELLGD----ERLGREMHGYVVKTGFAVDVSVCNSLIQM  332 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence            999999999999999999999999  999999999999999999999    99999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076          232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM  311 (662)
Q Consensus       232 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~  311 (662)
                      |+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|  ...|+.||..||++++.+|++.|+++.|.+
T Consensus       333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M--~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~  410 (857)
T PLN03077        333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM--EQDNVSPDEITIASVLSACACLGDLDVGVK  410 (857)
T ss_pred             HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH--HHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999  899999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 006076          312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP  391 (662)
Q Consensus       312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  391 (662)
                      +|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.
T Consensus       411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~  489 (857)
T PLN03077        411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS  489 (857)
T ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986 599999


Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI  471 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~  471 (662)
                      .||+.+|.+|++.|+++.+.+++..+. +.|+.++..++++||++|+++|++++|.++|+++  .||..+|++||.+|.+
T Consensus       490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~  566 (857)
T PLN03077        490 VTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVA  566 (857)
T ss_pred             hHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHH
Confidence            999999999999999999999999997 5689999999999999999999999999999998  7999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH-hCCCcCCCceeEEEECCEEEEEeecCCC
Q 006076          472 HCNVELAERASKRLFEL--EPTNAGNYVLLADVYAAADMWDEVKRVKRLLE-ARGLQKVPGRSRIEVKRKMYSFVSVDEF  548 (662)
Q Consensus       472 ~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~  548 (662)
                      +|+.++|..+|++|.+.  .|+ ..+|..++.+|++.|++++|.++|+.|. +.|+.+.... +..       ++.+...
T Consensus       567 ~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y~~-------lv~~l~r  637 (857)
T PLN03077        567 HGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-YAC-------VVDLLGR  637 (857)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-HHH-------HHHHHHh
Confidence            99999999999999875  454 7899999999999999999999999999 6777554321 111       2344444


Q ss_pred             CccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHHHHHhhhhHHHH-HHHhhcCCCCCCcEEEEecccccCCCcc
Q 006076          549 HPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEKERIVLGHSEKLA-VAFGLINTSKGETIRITKNLRLCEDCHS  627 (662)
Q Consensus       549 ~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~i~~~~~l~~c~~~~~  627 (662)
                      .+..+    ++.+++++|   .+.||......-+..+.....+- -.|+.+ ..+.+.+...+..+.+.+-+...|+..+
T Consensus       638 ~G~~~----eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        638 AGKLT----EAYNFINKM---PITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             CCCHH----HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            45555    445677766   57888764333333332111110 012222 1245555555555544555677899999


Q ss_pred             hhhhhhccccceEE-------EecCCccccccCcccCC
Q 006076          628 FTKFISKFANKEIL-------VRDVNRFHHFRNGVCSC  658 (662)
Q Consensus       628 ~~~~~s~~~~~~~~-------~~d~~~~h~f~~g~csc  658 (662)
                      +.++...|..+.+.       +.-.+..|-|..|.-|-
T Consensus       710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h  747 (857)
T PLN03077        710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH  747 (857)
T ss_pred             HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence            99999888766332       12246788887776543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-67  Score=588.98  Aligned_cols=498  Identities=17%  Similarity=0.227  Sum_probs=462.2

Q ss_pred             hhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 006076           19 TNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNS   95 (662)
Q Consensus        19 ~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~   95 (662)
                      ..+++.|.   ++++|.++| ++|+.++.+.|+...++.++.+|.+.|..++|+.+|+....||..+|+.++.+|++.|+
T Consensus       374 ~~~y~~l~r~G~l~eAl~Lf-d~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~  452 (1060)
T PLN03218        374 IDAYNRLLRDGRIKDCIDLL-EDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD  452 (1060)
T ss_pred             HHHHHHHHHCcCHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence            34444443   899999999 99999999999998899999999999999999999997777999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCCccHHHHHHHH
Q 006076           96 LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR----RRTIYVWNALFRALTLAGRGEEVLELYRR  171 (662)
Q Consensus        96 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~  171 (662)
                      ++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|.    .||..+||+||.+|++.|++++|+++|++
T Consensus       453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~  532 (1060)
T PLN03218        453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI  532 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998    47999999999999999999999999999


Q ss_pred             HhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006076          172 MNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLR--HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA  249 (662)
Q Consensus       172 m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  249 (662)
                      |...  |+.||..||+.++.+|++.++    +++|.++|.+|.+  .|+.||..+|++||.+|+++|++++|.++|+.|.
T Consensus       533 M~~~--Gv~PD~vTYnsLI~a~~k~G~----~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        533 MRSK--NVKPDRVVFNALISACGQSGA----VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHc--CCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999  999999999999999999999    9999999999987  6789999999999999999999999999999997


Q ss_pred             C----CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch
Q 006076          250 V----KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL  325 (662)
Q Consensus       250 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~  325 (662)
                      +    |+..+||++|.+|++.|++++|+++|++|  ...|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.||.
T Consensus       607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM--~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~  684 (1060)
T PLN03218        607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM--KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT  684 (1060)
T ss_pred             HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            4    57799999999999999999999999999  89999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          326 PVVSALVTMYARCGKLELGQCVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       326 ~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      .+|++||++|+++|++++|.++|++|.    .||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~  764 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS  764 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999995    6999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh----hcC-------------------CHHHHHHHHHhc---CC
Q 006076          402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG----RAN-------------------KLEEAAKIIEDL---RI  455 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m---~~  455 (662)
                      ++.|++++|.++|+.|. +.|+.||..+|++|+.++.    +++                   ..++|..+|++|   ++
T Consensus       765 ~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi  843 (1060)
T PLN03218        765 ERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT  843 (1060)
T ss_pred             HHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence            99999999999999997 5689999999999997743    222                   346799999999   68


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCC
Q 006076          456 EPGPKVWGSLLGSCRIHCNVELAERASKRLFE-LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP  528 (662)
Q Consensus       456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~  528 (662)
                      .||..||++++.++...+..+.+..+++.+.. -.+.+..+|++|++.+.+.  .++|..++++|...|+.+..
T Consensus       844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~  915 (1060)
T PLN03218        844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV  915 (1060)
T ss_pred             CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence            99999999999877788888888888877643 3455678999999988432  36899999999999997654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.2e-61  Score=540.13  Aligned_cols=498  Identities=13%  Similarity=0.182  Sum_probs=256.2

Q ss_pred             hHHHHHHHHhCCCchHHHHHHh----cC-CCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh
Q 006076           52 KNELIQSLCKQGNLRQALDVLS----IE-PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS  126 (662)
Q Consensus        52 ~~~li~~~~~~g~~~~A~~~~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  126 (662)
                      |..++..+++.|++++|+++|+    .+ ..|+..+++.++.+|.+.|.+++|..++..|..    ||..+|+.||.+|+
T Consensus       373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~  448 (1060)
T PLN03218        373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA  448 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence            4445555555555555555554    12 233444444555555555555555555544432    45555555555555


Q ss_pred             cCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccc
Q 006076          127 HFDSVDDARHVFDKTRR----RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL  202 (662)
Q Consensus       127 ~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~  202 (662)
                      +.|+++.|.++|+.|.+    +|..+||+||.+|++.|++++|.++|++|.+.  |+.||..||+.++.+|++.++    
T Consensus       449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~--Gv~PdvvTynaLI~gy~k~G~----  522 (1060)
T PLN03218        449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA--GVEANVHTFGALIDGCARAGQ----  522 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCcC----
Confidence            55555555555555432    34455555555555555555555555555555  555555555555555555555    


Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC------CCCHhHHHHHHHHHHHcCChhHHHHHH
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA------VKNVVSWSAMIACYARNGMAFEALELF  276 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~  276 (662)
                      +++|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|.      .||.++|++||.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            55555555555555555555555555555555555555555555552      245555555555555555555555555


Q ss_pred             HHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----
Q 006076          277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD----  352 (662)
Q Consensus       277 ~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----  352 (662)
                      ++|  ...++.|+..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|++||++|++.|++++|.++|+.|.    
T Consensus       603 ~~M--~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~  680 (1060)
T PLN03218        603 QMI--HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI  680 (1060)
T ss_pred             HHH--HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            555  44555555555555555555555555555555555555555555555555555555555555555555554    


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076          353 KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC  432 (662)
Q Consensus       353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  432 (662)
                      .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. ..|+.||..+|++
T Consensus       681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~s  759 (1060)
T PLN03218        681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSI  759 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHH
Confidence            245555555555555555555555555555555555555555555555555555555555555553 2345555555555


Q ss_pred             HHHHHhhcCCHHHHHHHHHhc---CCCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHH
Q 006076          433 MVDLLGRANKLEEAAKIIEDL---RIEPGPKVWGSLLGSCRI-----------------------HCNVELAERASKRLF  486 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~  486 (662)
                      ++.+|++.|++++|.+++++|   ++.||..+|++++..|.+                       .+..++|..+|++|.
T Consensus       760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~  839 (1060)
T PLN03218        760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI  839 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence            555555555555555555554   344555555555543321                       011234445555554


Q ss_pred             hcC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHH
Q 006076          487 ELE-PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAE  565 (662)
Q Consensus       487 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  565 (662)
                      +.+ .+|..+|..++..+.+.+.++.+..+++.|...+..+... .++.       .+.|...      ...++..++++
T Consensus       840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-~y~~-------Li~g~~~------~~~~A~~l~~e  905 (1060)
T PLN03218        840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-NLST-------LVDGFGE------YDPRAFSLLEE  905 (1060)
T ss_pred             HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-hhHH-------HHHhhcc------ChHHHHHHHHH
Confidence            432 1123445544444445555555555554444333211100 0110       1222211      12367889999


Q ss_pred             HHHCCcccCCc
Q 006076          566 MKEKGYVPQTK  576 (662)
Q Consensus       566 m~~~g~~p~~~  576 (662)
                      |.+.|+.|+..
T Consensus       906 m~~~Gi~p~~~  916 (1060)
T PLN03218        906 AASLGVVPSVS  916 (1060)
T ss_pred             HHHcCCCCCcc
Confidence            99999999986

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9.6e-61  Score=533.03  Aligned_cols=405  Identities=23%  Similarity=0.367  Sum_probs=383.0

Q ss_pred             ccccchHHHhhccc----cchhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--
Q 006076            3 ALQSPQTPQLLRSP----YHTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--   73 (662)
Q Consensus         3 ~~~~h~~~~~~g~~----~~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--   73 (662)
                      |+++|..+.+.|+.    +.|+|+++|+   ++++|+++| ++|+++|.++     ||++|.+|++.|++++|+++|+  
T Consensus       142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf-~~m~~~~~~t-----~n~li~~~~~~g~~~~A~~lf~~M  215 (697)
T PLN03081        142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF-DEMPERNLAS-----WGTIIGGLVDAGNYREAFALFREM  215 (697)
T ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH-hcCCCCCeee-----HHHHHHHHHHCcCHHHHHHHHHHH
Confidence            57899999999995    8999999999   999999999 9999988776     5669999999999999999998  


Q ss_pred             --cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHH
Q 006076           74 --IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA  151 (662)
Q Consensus        74 --~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~  151 (662)
                        .+..||..||+.++.+|+..|....++++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+
T Consensus       216 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~  295 (697)
T PLN03081        216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS  295 (697)
T ss_pred             HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHH
Confidence              688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076          152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM  231 (662)
Q Consensus       152 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  231 (662)
                      ||.+|++.|++++|+++|++|.+.  |+.||..||++++.+|++.+.    ++.|+++|..+.+.|++||..++|+||++
T Consensus       296 li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~----~~~a~~i~~~m~~~g~~~d~~~~~~Li~~  369 (697)
T PLN03081        296 MLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLAL----LEHAKQAHAGLIRTGFPLDIVANTALVDL  369 (697)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccc----hHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence            999999999999999999999999  999999999999999999999    99999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076          232 YARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM  311 (662)
Q Consensus       232 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~  311 (662)
                      |+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|  ...|+.||..||++++.+|++.|.+++|.+
T Consensus       370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M--~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~  447 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM--IAEGVAPNHVTFLAVLSACRYSGLSEQGWE  447 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999  899999999999999999999999999999


Q ss_pred             HHHHHHH-hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006076          312 IHGYILR-RGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP  389 (662)
Q Consensus       312 ~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  389 (662)
                      +|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+  +.|
T Consensus       448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p  525 (697)
T PLN03081        448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGP  525 (697)
T ss_pred             HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCC
Confidence            9999986 6999999999999999999999999999999987 68899999999999999999999999888865  556


Q ss_pred             C-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCC
Q 006076          390 S-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR  424 (662)
Q Consensus       390 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  424 (662)
                      + ..+|+.+++.|++.|++++|.++++.|. +.|+.
T Consensus       526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~~g~~  560 (697)
T PLN03081        526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLK-RKGLS  560 (697)
T ss_pred             CCCcchHHHHHHHHhCCCHHHHHHHHHHHH-HcCCc
Confidence            4 4688888888888888888888888886 44554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.98  E-value=4e-28  Score=282.81  Aligned_cols=477  Identities=13%  Similarity=0.080  Sum_probs=356.3

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVH  103 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  103 (662)
                      +.++|.+.| +.+...++...  ..|..+...+...|++++|+..|+   ...+.+......++..+.+.|++++|.+++
T Consensus       378 ~~~~A~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  454 (899)
T TIGR02917       378 DFEKAAEYL-AKATELDPENA--AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA  454 (899)
T ss_pred             CHHHHHHHH-HHHHhcCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence            888899999 77765544322  236678888888899998888887   222223344555667777888888888888


Q ss_pred             HHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCC
Q 006076          104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR  180 (662)
Q Consensus       104 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~  180 (662)
                      ..+.+.. +.++.++..+...|...|++++|.+.|+++.+   .+...+..+...+...|++++|.+.|+++...   .+
T Consensus       455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~  530 (899)
T TIGR02917       455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DP  530 (899)
T ss_pred             HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cc
Confidence            8887653 45667788888888888888888888876543   35566777778888888888888888888765   23


Q ss_pred             CChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHH
Q 006076          181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWS  257 (662)
Q Consensus       181 p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~  257 (662)
                      .+..++..+...+...++    .+++...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+..   .+...|.
T Consensus       531 ~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  605 (899)
T TIGR02917       531 KNLRAILALAGLYLRTGN----EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL  605 (899)
T ss_pred             CcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            455677777777777777    888888888887765 55667777888888888888888888887753   3567788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076          258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR  337 (662)
Q Consensus       258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  337 (662)
                      .+..+|.+.|++++|+..|+++  .... +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+.+
T Consensus       606 ~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  681 (899)
T TIGR02917       606 MLGRAQLAAGDLNKAVSSFKKL--LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA  681 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH--HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            8888888888888888888877  3322 2345567777777788888888888888887653 3456777888888888


Q ss_pred             cCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          338 CGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      .|++++|.++++.+.+   ++...|..+...|...|++++|++.|+++...  .|+..++..+..++.+.|++++|.+.+
T Consensus       682 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~  759 (899)
T TIGR02917       682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTL  759 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence            8888888888887763   35567777778888888888888888888774  455567777777888888888888888


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      +.+.+..  +.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+...|+ ++|+..++++++..|++
T Consensus       760 ~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~  836 (899)
T TIGR02917       760 EAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI  836 (899)
T ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence            8876542  556777888888888888888888888776 2 23466777777777777777 66888888888777777


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          493 AGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      +..+..++.+|...|++++|.+.++++.+.+.
T Consensus       837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            77777778888888888888888887777554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.98  E-value=7.9e-28  Score=280.30  Aligned_cols=485  Identities=13%  Similarity=0.007  Sum_probs=411.3

Q ss_pred             chhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHh
Q 006076           18 HTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCT   91 (662)
Q Consensus        18 ~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~   91 (662)
                      ...+...|.   +.++|...| +.+...++...  ..|+.+...+.+.|++++|...|+   ...+.+...+..+...+.
T Consensus       332 ~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  408 (899)
T TIGR02917       332 RRLLASIQLRLGRVDEAIATL-SPALGLDPDDP--AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL  408 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHH-HHHHhcCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            344444444   899999999 88776665433  347789999999999999999998   233345667778888888


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHH
Q 006076           92 HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLEL  168 (662)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l  168 (662)
                      ..|++++|.+.+..+.+... ........++..|.+.|++++|.++++++..   .+..+|+.+...+...|++++|.+.
T Consensus       409 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  487 (899)
T TIGR02917       409 SQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA  487 (899)
T ss_pred             hCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999988653 2345667788899999999999999988764   3677899999999999999999999


Q ss_pred             HHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006076          169 YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM  248 (662)
Q Consensus       169 ~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~  248 (662)
                      |+++.+.   .+.+...+..+...+...++    +++|.+.+..+++.. +.+..++..+...|.+.|+.++|...|+++
T Consensus       488 ~~~a~~~---~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  559 (899)
T TIGR02917       488 FEKALSI---EPDFFPAAANLARIDIQEGN----PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA  559 (899)
T ss_pred             HHHHHhh---CCCcHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999865   23345566777778888888    999999999998876 567888999999999999999999999987


Q ss_pred             CC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch
Q 006076          249 AV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL  325 (662)
Q Consensus       249 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~  325 (662)
                      ..   .+...+..++..|.+.|++++|+.+++++  ... .+.+..++..+..++...|++++|...++.+.+.. +.+.
T Consensus       560 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  635 (899)
T TIGR02917       560 AELNPQEIEPALALAQYYLGKGQLKKALAILNEA--ADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSA  635 (899)
T ss_pred             HHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH--HHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence            43   35677888999999999999999999998  432 34567889999999999999999999999998875 4467


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 006076          326 PVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS  402 (662)
Q Consensus       326 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~  402 (662)
                      ..+..+...|.+.|++++|..+|+++.+   .+..+|..++..+...|++++|.++++.+...+ +++...+..+...+.
T Consensus       636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~  714 (899)
T TIGR02917       636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL  714 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence            7888999999999999999999998763   457799999999999999999999999998874 456677888888999


Q ss_pred             cCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006076          403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAER  480 (662)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~  480 (662)
                      ..|++++|.+.|+.+...   .|+..++..++..+.+.|++++|.+.++++  ..+.+..++..+...|...|+.++|..
T Consensus       715 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~  791 (899)
T TIGR02917       715 RQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK  791 (899)
T ss_pred             HCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999753   566688889999999999999999999887  234577888899999999999999999


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          481 ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       481 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      .++++++..|+++.++..++.+|...|+ .+|...+++.....
T Consensus       792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            9999999999999999999999999999 88999999887653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.96  E-value=9e-31  Score=215.41  Aligned_cols=106  Identities=66%  Similarity=0.973  Sum_probs=97.2

Q ss_pred             ceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHCCcccCCccccccCChHHH--------HHHHhhhhHHHHH
Q 006076          529 GRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVLYDLDAEEK--------ERIVLGHSEKLAV  600 (662)
Q Consensus       529 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~  600 (662)
                      |+||+++    |.|++|+.+||+.        ++..+|...||.|+...+.|+++++++        +..+.+||||||+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi   69 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI   69 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence            6899986    9999999999988        366788889999999999998877665        5688999999999


Q ss_pred             HHhhcCCCCCCcEEEEecc-cccCCCcchhhhhhccccceEEEecCCcccccc
Q 006076          601 AFGLINTSKGETIRITKNL-RLCEDCHSFTKFISKFANKEILVRDVNRFHHFR  652 (662)
Q Consensus       601 ~~~~~~~~~~~~i~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~d~~~~h~f~  652 (662)
                      +||++++      +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus        70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            9999998      899998 999999999999999999999999999999996

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=1.3e-19  Score=212.82  Aligned_cols=475  Identities=15%  Similarity=0.090  Sum_probs=278.9

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhH-----------------HHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTY-----------------ELLL   87 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~-----------------~~ll   87 (662)
                      +.|.|++.+ +++...++.....  +..++..+.+.|+.++|...++  ....|+...+                 ....
T Consensus        43 ~~d~a~~~l-~kl~~~~p~~p~~--~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A  119 (1157)
T PRK11447         43 REDLVRQSL-YRLELIDPNNPDV--IAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA  119 (1157)
T ss_pred             ChHHHHHHH-HHHHccCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence            667777777 6666555544333  5667777778888888887777  2233333222                 2223


Q ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCcc
Q 006076           88 LSCTHHNSLSDALNVHSHLTDNGFDQDPFL-VTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGE  163 (662)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~  163 (662)
                      ..+...|++++|.+.+..+.+.. +|+... ...+.......|+.++|++.|+++.+.   +...+..+...+...|+++
T Consensus       120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~  198 (1157)
T PRK11447        120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD  198 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence            34566778888888888777653 223221 111112222357777888888776643   4456777777777778888


Q ss_pred             HHHHHHHHHhhCCC----------------CCC--------------CChhhH-------------------H--HHHHH
Q 006076          164 EVLELYRRMNGTGT----------------GIR--------------SDRFTY-------------------T--YVLKA  192 (662)
Q Consensus       164 ~A~~l~~~m~~~~~----------------g~~--------------p~~~t~-------------------~--~ll~~  192 (662)
                      +|++.|+++.....                +..              |+...+                   .  ..-..
T Consensus       199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~  278 (1157)
T PRK11447        199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA  278 (1157)
T ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence            88887777654310                000              110000                   0  00122


Q ss_pred             HHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--CC---HhHHHHH--------
Q 006076          193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KN---VVSWSAM--------  259 (662)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~---~~~~~~l--------  259 (662)
                      +...++    +++|...+..+++.. +.+..++..|...|.+.|++++|...|++..+  |+   ...|..+        
T Consensus       279 ~~~~g~----~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        279 AVDSGQ----GGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            333455    888888888888764 45677788888888888888888888877643  21   1223222        


Q ss_pred             ----HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076          260 ----IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY  335 (662)
Q Consensus       260 ----i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  335 (662)
                          ...+.+.|++++|+..|++.  .... +.+...+..+...+...|++++|.+.++.+++... .+...+..+...|
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~A--l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~  429 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQA--RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence                33566788888888888877  3322 22455566677778888888888888888877642 2334444444444


Q ss_pred             HhcCChHHHHHHHhhCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHh
Q 006076          336 ARCGKLELGQCVFDHMDKRD------------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACS  402 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~  402 (662)
                      . .++.++|..+++.+....            ...+..+...+...|++++|++.|++..+  ..|+ ...+..+...+.
T Consensus       430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~  506 (1157)
T PRK11447        430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLR  506 (1157)
T ss_pred             H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            3 234455555544443210            11233344445555666666666666555  2343 234444555556


Q ss_pred             cCCCHHHHHHHHHHhHHhcCCCCChHHHH--------------------------------------------HHHHHHh
Q 006076          403 HAGLVEEGKMLFESMRKEHMIRPSVEHYA--------------------------------------------CMVDLLG  438 (662)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~  438 (662)
                      +.|++++|...++.+.+..  +.+...+.                                            .+.+.+.
T Consensus       507 ~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~  584 (1157)
T PRK11447        507 QAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR  584 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence            6666666666666554321  11222111                                            2233445


Q ss_pred             hcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      ..|+.++|..+++.-  +++...+..+...+...|+.++|+..++++++.+|+++.++..++.+|...|++++|.+.++.
T Consensus       585 ~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        585 DSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555666666655532  234445566667777778888888888888777777777777777777777888888777776


Q ss_pred             HHh
Q 006076          519 LEA  521 (662)
Q Consensus       519 m~~  521 (662)
                      ..+
T Consensus       663 ll~  665 (1157)
T PRK11447        663 LPA  665 (1157)
T ss_pred             Hhc
Confidence            654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=4.4e-19  Score=208.25  Aligned_cols=377  Identities=11%  Similarity=0.014  Sum_probs=238.6

Q ss_pred             HHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChh------------hHH
Q 006076          123 NVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF------------TYT  187 (662)
Q Consensus       123 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~------------t~~  187 (662)
                      ..+...|++++|...|++..+   .+...+..+...|.+.|++++|+..|++..+.    .|+..            .|.
T Consensus       277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~----~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL----DPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCccchhHHHHHHHhhhHH
Confidence            344455555555555554432   23445555555555555555555555555543    11110            010


Q ss_pred             ---HHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHH-----
Q 006076          188 ---YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSW-----  256 (662)
Q Consensus       188 ---~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~-----  256 (662)
                         ..-..+...++    +++|...+..+++.. +.+...+..|...|.+.|++++|.+.|++..+  | +...+     
T Consensus       353 ~~~~~g~~~~~~g~----~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~  427 (1157)
T PRK11447        353 LLIQQGDAALKANN----LAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN  427 (1157)
T ss_pred             HHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence               11123334444    555555555555543 33344455555555555555555555555432  1 22222     


Q ss_pred             -------------------------------------HHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHH
Q 006076          257 -------------------------------------SAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQ  298 (662)
Q Consensus       257 -------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~  298 (662)
                                                           ..+...+...|++++|++.|++.  ..  ..| +...+..+..
T Consensus       428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A--l~--~~P~~~~~~~~LA~  503 (1157)
T PRK11447        428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR--LA--LDPGSVWLTYRLAQ  503 (1157)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH--HH--hCCCCHHHHHHHHH
Confidence                                                 23344455677777777777766  22  224 3445556666


Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC----Chh---------HHHHHHHH
Q 006076          299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR----DVV---------SWNSLISS  365 (662)
Q Consensus       299 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~  365 (662)
                      .+...|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+...    +..         .+..+...
T Consensus       504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~  582 (1157)
T PRK11447        504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR  582 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence            6777777777777777776643 223444444455566677777777777776531    111         12234566


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006076          366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE  445 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  445 (662)
                      +...|+.++|+++++.     .+++...+..+...+.+.|++++|...|+...+..  +.+...+..++..|...|++++
T Consensus       583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHH
Confidence            7778888888888772     34455666778888899999999999999998642  4468889999999999999999


Q ss_pred             HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChHHHHHHHH
Q 006076          446 AAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA------GNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       446 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                      |++.++... ..| +..++..+..++...|+.++|...++++++..|+++      ..+..++.++.+.|++++|...++
T Consensus       656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~  735 (1157)
T PRK11447        656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK  735 (1157)
T ss_pred             HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999873 344 456677788888899999999999999998776544      355667889999999999999998


Q ss_pred             HHH
Q 006076          518 LLE  520 (662)
Q Consensus       518 ~m~  520 (662)
                      +..
T Consensus       736 ~Al  738 (1157)
T PRK11447        736 DAM  738 (1157)
T ss_pred             HHH
Confidence            775

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=7.7e-20  Score=182.08  Aligned_cols=446  Identities=14%  Similarity=0.129  Sum_probs=349.9

Q ss_pred             HHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076           53 NELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD  129 (662)
Q Consensus        53 ~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  129 (662)
                      ..+..-..+.|++++|.+--.   ...+.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..|
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence            346777788999999987655   2222223333333344555555555443333333322 334568889999999999


Q ss_pred             ChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076          130 SVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG  206 (662)
Q Consensus       130 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a  206 (662)
                      ++++|+..++.+.+   ..+..|..+..++...|+.+.|.+.|.+..+.    .|+.+...+-+.-+.   ...|++++|
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql----nP~l~ca~s~lgnLl---ka~Grl~ea  203 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL----NPDLYCARSDLGNLL---KAEGRLEEA  203 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc----CcchhhhhcchhHHH---Hhhcccchh
Confidence            99999999997765   36689999999999999999999999998854    666543332222111   123338999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHhhhh
Q 006076          207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGMAFEALELFREMIMES  283 (662)
Q Consensus       207 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  283 (662)
                      ..-+...++.. +.-..+|+.|...+-..|+...|..-|++...-|   ...|-.|...|...+.+++|+..|.+.    
T Consensus       204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA----  278 (966)
T KOG4626|consen  204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA----  278 (966)
T ss_pred             HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH----
Confidence            99998888764 3346788999999999999999999999986533   457888999999999999999999866    


Q ss_pred             CCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHH
Q 006076          284 HDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSW  359 (662)
Q Consensus       284 ~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~  359 (662)
                      ...+|+ .+.+..+...|-..|.+|.|...+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+...  | -..+.
T Consensus       279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam  357 (966)
T KOG4626|consen  279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM  357 (966)
T ss_pred             HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence            345565 4667777777889999999999999998864 22367999999999999999999999998764  3 35688


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006076          360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLL  437 (662)
Q Consensus       360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~  437 (662)
                      +.|...|...|.+++|..+|....+  +.|.- ..++.|...|-+.|++++|...+++..+   |+|+ ...|+.+...|
T Consensus       358 ~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~  432 (966)
T KOG4626|consen  358 NNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTY  432 (966)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHH
Confidence            8999999999999999999999888  66664 6788999999999999999999999874   6786 56899999999


Q ss_pred             hhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006076          438 GRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV  515 (662)
Q Consensus       438 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  515 (662)
                      -..|+.+.|.+.+.+. .+.|. ....+.|.+.|...|++.+|+..++..+.++|+.+.+|..++..+.--.+|.+--+.
T Consensus       433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~  512 (966)
T KOG4626|consen  433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR  512 (966)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence            9999999999999887 56664 467889999999999999999999999999999999999998888766677664333


Q ss_pred             HH
Q 006076          516 KR  517 (662)
Q Consensus       516 ~~  517 (662)
                      ++
T Consensus       513 ~~  514 (966)
T KOG4626|consen  513 MK  514 (966)
T ss_pred             HH
Confidence            33

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.87  E-value=9.2e-18  Score=188.45  Aligned_cols=469  Identities=11%  Similarity=0.012  Sum_probs=322.7

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHS  104 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  104 (662)
                      +.++|...| +...+.||.+...  +..+...|.+.|++++|+..++  -...|+...|..++...   ++..+|..+++
T Consensus        59 d~~~A~~~l-~~Al~~dP~n~~~--~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye  132 (987)
T PRK09782         59 DEATAIREF-EYIHQQVPDNIPL--TLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE  132 (987)
T ss_pred             CHHHHHHHH-HHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence            788999999 8888888877443  7889999999999999999999  33445555555544333   88889999999


Q ss_pred             HHHHhCCCCChhHHHHHHHH--------hhcCCChHHHHHHHhcCCCCC--cch-HHHHHHHHHhcCCccHHHHHHHHHh
Q 006076          105 HLTDNGFDQDPFLVTKLINV--------YSHFDSVDDARHVFDKTRRRT--IYV-WNALFRALTLAGRGEEVLELYRRMN  173 (662)
Q Consensus       105 ~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~m~  173 (662)
                      ++.+.. +-+..++..+...        |.+.+...++++ . +...++  ..+ .-.+...|.+.|++++|++++.++.
T Consensus       133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~  209 (987)
T PRK09782        133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR  209 (987)
T ss_pred             HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            999875 3345566666665        777766677776 3 333333  333 4444889999999999999999999


Q ss_pred             hCCCCCCCChhh-HHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--
Q 006076          174 GTGTGIRSDRFT-YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--  250 (662)
Q Consensus       174 ~~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--  250 (662)
                      +.  +  |.... ...+-.++...-.    -+.+..++..    .+..+..+..++.+.|.+.|+.++|.+++.+++.  
T Consensus       210 k~--~--pl~~~~~~~L~~ay~q~l~----~~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~  277 (987)
T PRK09782        210 QQ--N--TLSAAERRQWFDVLLAGQL----DDRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF  277 (987)
T ss_pred             hc--C--CCCHHHHHHHHHHHHHhhC----HHHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence            87  3  33333 3444445544222    2555555332    3446888999999999999999999999988751  


Q ss_pred             ---CCHhHH--H----------------------------HHHH------------------------------------
Q 006076          251 ---KNVVSW--S----------------------------AMIA------------------------------------  261 (662)
Q Consensus       251 ---~~~~~~--~----------------------------~li~------------------------------------  261 (662)
                         |+..+|  +                            .++.                                    
T Consensus       278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  357 (987)
T PRK09782        278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN  357 (987)
T ss_pred             cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence               110000  0                            0011                                    


Q ss_pred             ---------------------------HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHcc-----------
Q 006076          262 ---------------------------CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL-----------  303 (662)
Q Consensus       262 ---------------------------~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~-----------  303 (662)
                                                 -..+.|+.++|.++|+........-.++......++..+.+.           
T Consensus       358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  437 (987)
T PRK09782        358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI  437 (987)
T ss_pred             hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence                                       113456666666666655210111112122222223322222           


Q ss_pred             ----------------------------------------------------CCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076          304 ----------------------------------------------------AALEQGKMIHGYILRRGLDSILPVVSAL  331 (662)
Q Consensus       304 ----------------------------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~l  331 (662)
                                                                          ++.++|...+.......  |+......+
T Consensus       438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~l  515 (987)
T PRK09782        438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAV  515 (987)
T ss_pred             hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence                                                                34444555455444432  343333334


Q ss_pred             HHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHH
Q 006076          332 VTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVE  408 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~  408 (662)
                      ...+...|++++|...|+++..  |+...+..+...+.+.|+.++|...|++..+..  |+. ..+..+.......|+++
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~  593 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE  593 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence            4445678888888888887653  445566777778888888888898888888753  443 33334444555679999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076          409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLF  486 (662)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  486 (662)
                      +|...++...+   +.|+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|+.++|+..+++++
T Consensus       594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999998875   3578888999999999999999999999887 4455 55677788888999999999999999999


Q ss_pred             hcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          487 ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       487 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      +.+|+++..+..++.+|...|++++|...+++..+..
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999887643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=5.5e-19  Score=176.09  Aligned_cols=417  Identities=14%  Similarity=0.144  Sum_probs=333.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCC
Q 006076           85 LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGR  161 (662)
Q Consensus        85 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~  161 (662)
                      .+..-.-+.|++.+|++-....-... +.+....-.+-..|....+++....--..-.+.   -..+|..+...+-..|+
T Consensus        53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~  131 (966)
T KOG4626|consen   53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ  131 (966)
T ss_pred             HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence            34444557789998877555443332 122222223335566666666544332222222   34689999999999999


Q ss_pred             ccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHH
Q 006076          162 GEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV-HIMTTLIDMYARFGCVM  239 (662)
Q Consensus       162 ~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~  239 (662)
                      .++|+.+|+.|.+.    +| ....|..+-.++...++    .+.|.+.+...++..  |+. .+.+.+-+..-..|++.
T Consensus       132 ~~~al~~y~~aiel----~p~fida~inla~al~~~~~----~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~  201 (966)
T KOG4626|consen  132 LQDALALYRAAIEL----KPKFIDAYINLAAALVTQGD----LELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLE  201 (966)
T ss_pred             HHHHHHHHHHHHhc----CchhhHHHhhHHHHHHhcCC----CcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccc
Confidence            99999999999975    45 45578888889998888    999999999988764  443 44455666666789999


Q ss_pred             HHHHHHHcCCC--CC-HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 006076          240 YAGFVFSQMAV--KN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN-SVTMVSVLQACAALAALEQGKMIHGY  315 (662)
Q Consensus       240 ~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~  315 (662)
                      +|...|.+..+  |. .+.|+.|...+..+|+...|+..|++.    -.+.|+ ...|..+-..+...+.++.|...+..
T Consensus       202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA----vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA----VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh----hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence            99998887654  32 468999999999999999999999976    345565 35788888888889999999998888


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-
Q 006076          316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-  391 (662)
Q Consensus       316 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-  391 (662)
                      +.... +....++..|.-.|...|.++.|...+++..+  |+ ...|+.|..++-..|++.+|...|.+.+.  +.|+. 
T Consensus       278 Al~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~ha  354 (966)
T KOG4626|consen  278 ALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHA  354 (966)
T ss_pred             HHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccH
Confidence            77653 23466777788889999999999999998874  54 45899999999999999999999999988  56664 


Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGS  468 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~  468 (662)
                      .+.+.|...+...|.+++|..+|....+   +.| -....+.|...|-..|++++|+.-+++. .++|+ ...++.+...
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt  431 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT  431 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence            6888999999999999999999998875   345 4667899999999999999999999987 78886 4689999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      |...|+...|.+.+.+++..+|.-+.++..|+.+|-.+|++.+|+.-++...+-
T Consensus       432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999987753

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.84  E-value=6e-17  Score=178.69  Aligned_cols=417  Identities=11%  Similarity=0.015  Sum_probs=290.9

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhc
Q 006076           83 YELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLA  159 (662)
Q Consensus        83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~  159 (662)
                      +......+.+.|+++.|...+...++.  .|++..|..+..+|.+.|++++|.+.++...+   .+...|..+..+|...
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            344556677889999999999988874  56778888899999999999999998886554   3556888888899999


Q ss_pred             CCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006076          160 GRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM  239 (662)
Q Consensus       160 g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  239 (662)
                      |++++|+.-|......+ +..+  .....++....        ...+.......++.. +++...+..+.. |.......
T Consensus       208 g~~~eA~~~~~~~~~~~-~~~~--~~~~~~~~~~l--------~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~  274 (615)
T TIGR00990       208 GKYADALLDLTASCIID-GFRN--EQSAQAVERLL--------KKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPK  274 (615)
T ss_pred             CCHHHHHHHHHHHHHhC-CCcc--HHHHHHHHHHH--------HHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCC
Confidence            99999998887665441 1111  11111121111        111122222222221 222222222222 22222222


Q ss_pred             HHHHHHHcCCCCCH---hHHHHHHHHH---HHcCChhHHHHHHHHHhhhhCC-CcCC-HHHHHHHHHHHHccCCHHHHHH
Q 006076          240 YAGFVFSQMAVKNV---VSWSAMIACY---ARNGMAFEALELFREMIMESHD-LCPN-SVTMVSVLQACAALAALEQGKM  311 (662)
Q Consensus       240 ~A~~~f~~~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~-~~p~-~~t~~~ll~a~~~~~~~~~a~~  311 (662)
                      .+..-++...+-+.   ..+..+...+   ...+++++|++.|++.  ...+ ..|+ ...+..+...+...|++++|..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a--l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~  352 (615)
T TIGR00990       275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA--LDLGKLGEKEAIALNLRGTFKCLKGKHLEALA  352 (615)
T ss_pred             cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH--HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            22221221111111   1111111111   2346889999999988  4433 3343 4556666677788999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076          312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS  388 (662)
Q Consensus       312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  388 (662)
                      .++.+++.. +.+...+..+...|...|++++|...|++..+   .+...|..+...|...|++++|+..|++..+.  .
T Consensus       353 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~  429 (615)
T TIGR00990       353 DLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--D  429 (615)
T ss_pred             HHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence            999998764 23456788889999999999999999997753   45778999999999999999999999999884  5


Q ss_pred             CC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH-H-----
Q 006076          389 PS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGP-K-----  460 (662)
Q Consensus       389 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-----  460 (662)
                      |+ ...+..+..++.+.|++++|...|+...+.  .+.+...++.+...|...|++++|.+.|++. .+.|+. .     
T Consensus       430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~  507 (615)
T TIGR00990       430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV  507 (615)
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence            54 466777788899999999999999998754  2456889999999999999999999999986 344421 1     


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          461 --VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       461 --~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                        .++..+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+
T Consensus       508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence              1222223344469999999999999999999988999999999999999999999998765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.84  E-value=5.6e-17  Score=182.19  Aligned_cols=481  Identities=10%  Similarity=0.032  Sum_probs=339.7

Q ss_pred             CCchhhHHhhhhccCCCCccccCCCChHHHHHH--------HHhCCCchHHHHHHh-cCCCCCHhhHHHH-HHHHhcCCC
Q 006076           26 PPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQS--------LCKQGNLRQALDVLS-IEPNPTQHTYELL-LLSCTHHNS   95 (662)
Q Consensus        26 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~-~~~~p~~~~~~~l-l~~~~~~~~   95 (662)
                      .+.++|..++ +++...++..-..  +..+...        |.+.+...++++ .+ ..+.|+..+.... ...+...++
T Consensus       122 ~~~~kA~~~y-e~l~~~~P~n~~~--~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d  197 (987)
T PRK09782        122 PVEVKSVTTV-EELLAQQKACDAV--PTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ  197 (987)
T ss_pred             ccChhHHHHH-HHHHHhCCCChhH--HHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence            4667788888 7777666654333  3334444        777777777777 44 3344455555555 888999999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhc-CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhh
Q 006076           96 LSDALNVHSHLTDNGFDQDPFLVTKLINVYSH-FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNG  174 (662)
Q Consensus        96 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  174 (662)
                      ++++..++..+.+.+. .+..-...|..+|.. .++ +.|..+++...+.|+..+..+...|.+.|+.++|.++++++..
T Consensus       198 w~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~  275 (987)
T PRK09782        198 WSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP  275 (987)
T ss_pred             HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence            9999999999999873 345556677778887 466 8888887765556888999999999999999999999998765


Q ss_pred             CCCCCCCChhhHHHHHHHH------------------------------HhCCC--------------------------
Q 006076          175 TGTGIRSDRFTYTYVLKAC------------------------------VASSC--------------------------  198 (662)
Q Consensus       175 ~~~g~~p~~~t~~~ll~~~------------------------------~~~~~--------------------------  198 (662)
                      .. --.|+..++-..+.-.                              .+.+.                          
T Consensus       276 ~~-~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  354 (987)
T PRK09782        276 LF-TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA  354 (987)
T ss_pred             cc-cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence            41 0112222222211110                              00000                          


Q ss_pred             ---------------------------------CccchHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCH---HH
Q 006076          199 ---------------------------------GFSLLKHGKEIHASVLRH-G-YNGIVHIMTTLIDMYARFGCV---MY  240 (662)
Q Consensus       199 ---------------------------------~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~---~~  240 (662)
                                                       ..|+.++|.+++...... + -..+....+-|+..|.+.+.+   ..
T Consensus       355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence                                             012233344444333321 0 111333445667777776652   22


Q ss_pred             HHHH-------------------------HHcCC---CC--CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH
Q 006076          241 AGFV-------------------------FSQMA---VK--NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS  290 (662)
Q Consensus       241 A~~~-------------------------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~  290 (662)
                      |..+                         +....   .+  +...|..+..++.. ++.++|+..|.+.  ..  ..|+.
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A--l~--~~Pd~  509 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA--EQ--RQPDA  509 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH--HH--hCCch
Confidence            2222                         11111   12  45567777777776 7888899977766  22  33666


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHH---HHHHHHH
Q 006076          291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN---SLISSYG  367 (662)
Q Consensus       291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~  367 (662)
                      .....+..++...|++++|...++.+...  +|+...+..+...+.+.|++++|...|++..+.++..++   .+.....
T Consensus       510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~  587 (987)
T PRK09782        510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY  587 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            55445555567899999999999987654  344455667788899999999999999987753333233   3333444


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076          368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA  447 (662)
Q Consensus       368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  447 (662)
                      +.|++++|+..|++..+  ..|+...+..+..++.+.|++++|...++...+..  +.+...++.+...+...|++++|+
T Consensus       588 ~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        588 IPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             hCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            55999999999999998  56788889999999999999999999999998642  446778899999999999999999


Q ss_pred             HHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          448 KIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       448 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      +.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-++..-.-++
T Consensus       664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            999987 4455 6778999999999999999999999999999999999999999999999999999998877665444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=3.5e-18  Score=178.88  Aligned_cols=291  Identities=14%  Similarity=0.095  Sum_probs=225.2

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC---HHHHHHHHHHHHcc
Q 006076          230 DMYARFGCVMYAGFVFSQMAVK---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN---SVTMVSVLQACAAL  303 (662)
Q Consensus       230 ~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~---~~t~~~ll~a~~~~  303 (662)
                      ..+...|++++|...|.++.+.   +..+|..+...+.+.|++++|+.+++.+  ...+..++   ..++..+...+...
T Consensus        43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~--l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL--LSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            3456678888888888887532   4457778888888888888888888887  43321111   24566677778888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC------hhHHHHHHHHHHhcCChHHH
Q 006076          304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD------VVSWNSLISSYGVHGYGGKA  375 (662)
Q Consensus       304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A  375 (662)
                      |+++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+  |+      ...|..+...+.+.|+.++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            88888888888887653 34567788888888888888888888888753  21      12456677788889999999


Q ss_pred             HHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076          376 IQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS--VEHYACMVDLLGRANKLEEAAKIIED  452 (662)
Q Consensus       376 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~  452 (662)
                      ...|+++.+.  .|+ ...+..+...+.+.|++++|.++++.+.+.   .|+  ...++.++.+|.+.|++++|...+++
T Consensus       200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999874  344 456777788899999999999999998753   333  45678899999999999999999998


Q ss_pred             c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCcCCC
Q 006076          453 L-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA---ADMWDEVKRVKRLLEARGLQKVP  528 (662)
Q Consensus       453 m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~  528 (662)
                      + ...|+...+..+...+...|++++|...++++++..|++. .+..+...+..   .|+.+++..++++|.+++++++|
T Consensus       275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p  353 (389)
T PRK11788        275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP  353 (389)
T ss_pred             HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence            7 4567777778888999999999999999999999999864 55555665553   56999999999999999988887


Q ss_pred             c
Q 006076          529 G  529 (662)
Q Consensus       529 ~  529 (662)
                      .
T Consensus       354 ~  354 (389)
T PRK11788        354 R  354 (389)
T ss_pred             C
Confidence            6

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=2.3e-18  Score=180.19  Aligned_cols=290  Identities=13%  Similarity=0.099  Sum_probs=180.9

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCCcc
Q 006076           91 THHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT-------IYVWNALFRALTLAGRGE  163 (662)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~  163 (662)
                      ...|++++|...+..+.+.+ +.+..++..+...|.+.|++++|..+++.+....       ...++.+...|.+.|+++
T Consensus        46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            44566666666666666653 2234456666666666666666666666554321       134566666666677777


Q ss_pred             HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHH
Q 006076          164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLIDMYARFGCVM  239 (662)
Q Consensus       164 ~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~  239 (662)
                      +|+.+|+++.+.   -+++..++..+...+...++    +++|.+.+..+.+.+..+.    ...+..+...|.+.|+++
T Consensus       125 ~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        125 RAEELFLQLVDE---GDFAEGALQQLLEIYQQEKD----WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             HHHHHHHHHHcC---CcchHHHHHHHHHHHHHhch----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence            777777776653   23345566666666666666    6666666666665542221    123445666677777777


Q ss_pred             HHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006076          240 YAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI  316 (662)
Q Consensus       240 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~  316 (662)
                      +|.+.|+++.+  | +...+..+...|.+.|++++|+++|+++  ...+......++..+..++...|++++|...++.+
T Consensus       198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV--EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777777642  2 3456667777777777778887777777  33221111345566667777777777777777777


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCH
Q 006076          317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSP  391 (662)
Q Consensus       317 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~  391 (662)
                      .+..  |+...+..++..|.+.|++++|.++|+++.  .|+..+++.++..+..   .|+.++++.++++|.+.++.|++
T Consensus       276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p  353 (389)
T PRK11788        276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP  353 (389)
T ss_pred             HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence            6653  444455667777777777777777776654  3666677766666553   44677777777777776666655


Q ss_pred             h
Q 006076          392 I  392 (662)
Q Consensus       392 ~  392 (662)
                      .
T Consensus       354 ~  354 (389)
T PRK11788        354 R  354 (389)
T ss_pred             C
Confidence            4

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=3.7e-16  Score=175.55  Aligned_cols=393  Identities=9%  Similarity=-0.021  Sum_probs=213.9

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCCc
Q 006076           86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT---RRRTIYVWNALFRALTLAGRG  162 (662)
Q Consensus        86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~  162 (662)
                      .+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++.   ...+...+..+...+...|++
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY   99 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            3444445555666665555554421 223334555555566666666666666552   222344555555566666666


Q ss_pred             cHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006076          163 EEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG  242 (662)
Q Consensus       163 ~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  242 (662)
                      ++|+..+++....    .|+...+..+-.++...++    .+.|...+..+++.. +.+..++..+...+.+.|..+.|.
T Consensus       100 ~eA~~~l~~~l~~----~P~~~~~~~la~~l~~~g~----~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049        100 DEALVKAKQLVSG----APDKANLLALAYVYKRAGR----HWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence            6666666666543    2222224444445555555    666666666666553 334455555666666677777777


Q ss_pred             HHHHcCCCCCHh--------HHHHHHHHHH-----HcCCh---hHHHHHHHHHhhhhCCCcCCHH-HHH----HHHHHHH
Q 006076          243 FVFSQMAVKNVV--------SWSAMIACYA-----RNGMA---FEALELFREMIMESHDLCPNSV-TMV----SVLQACA  301 (662)
Q Consensus       243 ~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~~p~~~-t~~----~ll~a~~  301 (662)
                      +.++.... ++.        ....++....     ..+++   ++|++.++.+. ......|+.. .+.    ..+.++.
T Consensus       171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll-~~~~~~p~~~~~~~~a~~d~l~~Ll  248 (765)
T PRK10049        171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE-ALWHDNPDATADYQRARIDRLGALL  248 (765)
T ss_pred             HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH-hhcccCCccchHHHHHHHHHHHHHH
Confidence            77776654 211        1111222211     12223   66777777773 1112223221 111    1133445


Q ss_pred             ccCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-----hhHHHHHHHHHHhcCChH
Q 006076          302 ALAALEQGKMIHGYILRRGLD-SILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-----VVSWNSLISSYGVHGYGG  373 (662)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-----~~~~~~li~~~~~~g~~~  373 (662)
                      ..++.++|+..|+.+.+.+.+ |+ .....+...|...|++++|...|+++.+  |.     ...+..+..++...|+++
T Consensus       249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            567777777777777766522 22 1222246677777777777777776643  21     123455555677777777


Q ss_pred             HHHHHHHHHHHcCC-----------CCCH---hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006076          374 KAIQIFKEMIYHGV-----------SPSP---ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR  439 (662)
Q Consensus       374 ~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  439 (662)
                      +|+++++++.....           .|+.   ..+..+...+...|++++|+++++.+...  .+.+...+..+...+..
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence            77777777766310           1221   12334444556666666666666666543  23455666666666666


Q ss_pred             cCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          440 ANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       440 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      .|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus       406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            66666666666665 33443 34445555556666666666666666666666654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=4.6e-16  Score=171.13  Aligned_cols=351  Identities=11%  Similarity=-0.006  Sum_probs=269.1

Q ss_pred             cCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCc
Q 006076          127 HFDSVDDARHVFDKTRRR------TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGF  200 (662)
Q Consensus       127 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~  200 (662)
                      +..+++.-.-.|..-+++      +..-...++..+.+.|++++|+.+++.....   .+-+...+..+..+....++  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~--   91 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQ--   91 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCC--
Confidence            455666555556555432      2233445677788899999999999998876   22223344445555566777  


Q ss_pred             cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHH
Q 006076          201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFR  277 (662)
Q Consensus       201 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~  277 (662)
                        ++.|.+.+..+++.. +.+...+..+...+.+.|++++|...|++...  | +...|..+...+.+.|++++|...++
T Consensus        92 --~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~  168 (656)
T PRK15174         92 --PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR  168 (656)
T ss_pred             --HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence              999999999998875 55677888889999999999999999998753  3 56788899999999999999999998


Q ss_pred             HHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---C
Q 006076          278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---R  354 (662)
Q Consensus       278 ~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~  354 (662)
                      .+  ....  |+.......+..+...|++++|...++.+++....++......+...+.+.|++++|...|++..+   .
T Consensus       169 ~~--~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~  244 (656)
T PRK15174        169 TQ--AQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD  244 (656)
T ss_pred             HH--HHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            77  3332  332222222334778899999999999987765444455556667888999999999999998763   3


Q ss_pred             ChhHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076          355 DVVSWNSLISSYGVHGYGGK----AIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH  429 (662)
Q Consensus       355 ~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (662)
                      +...+..+...|.+.|++++    |+..|++..+  ..|+ ...+..+...+...|++++|...++...+..  +.+...
T Consensus       245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a  320 (656)
T PRK15174        245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYV  320 (656)
T ss_pred             CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence            56688889999999999985    8999999988  4555 4678888889999999999999999988642  335667


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVW-GSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      +..+...|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus       321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            888899999999999999999987 346665443 3456778899999999999999999998853

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=1.1e-15  Score=171.84  Aligned_cols=395  Identities=11%  Similarity=0.034  Sum_probs=299.5

Q ss_pred             CCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHH
Q 006076          112 DQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTY  188 (662)
Q Consensus       112 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~  188 (662)
                      ..++....-.+......|+.++|++++.+...   .+...+..+...+.+.|++++|.++|++..+.   -+.+......
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~   88 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRG   88 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence            34555566677788889999999999988764   24445899999999999999999999998865   2333445666


Q ss_pred             HHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHHHHHH
Q 006076          189 VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIACYAR  265 (662)
Q Consensus       189 ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~  265 (662)
                      +...+...++    .++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+  | +...+..+...+.+
T Consensus        89 la~~l~~~g~----~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049         89 LILTLADAGQ----YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            6677788888    999999999999874 55666 88899999999999999999998864  3 56667778888999


Q ss_pred             cCChhHHHHHHHHHhhhhCCCcCCHH------HHHHHHHHH-----HccCCH---HHHHHHHHHHHHh-CCCCchh-H-H
Q 006076          266 NGMAFEALELFREMIMESHDLCPNSV------TMVSVLQAC-----AALAAL---EQGKMIHGYILRR-GLDSILP-V-V  328 (662)
Q Consensus       266 ~g~~~~A~~~~~~m~~~~~~~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-g~~~~~~-~-~  328 (662)
                      .|..++|++.++..  ..   .|+..      .....+...     ...+++   ++|.+.++.+++. ...|+.. . .
T Consensus       163 ~~~~e~Al~~l~~~--~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~  237 (765)
T PRK10049        163 NRLSAPALGAIDDA--NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ  237 (765)
T ss_pred             CCChHHHHHHHHhC--CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence            99999999999876  32   33320      111122221     112233   6788888888765 2233221 1 1


Q ss_pred             HHH---HHHHHhcCChHHHHHHHhhCCCCC--hh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HhHHHH
Q 006076          329 SAL---VTMYARCGKLELGQCVFDHMDKRD--VV--SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-----PISFVS  396 (662)
Q Consensus       329 ~~l---i~~y~~~g~~~~A~~~~~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~  396 (662)
                      .+.   +..+...|++++|+..|+.+.+.+  ..  .-..+...|...|++++|+..|+++....  |.     ......
T Consensus       238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~  315 (765)
T PRK10049        238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELAD  315 (765)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHH
Confidence            111   234457799999999999998532  11  12225778999999999999999987643  32     234566


Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHH
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEHM----------IRPS---VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKV  461 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~  461 (662)
                      +..++...|++++|.++++.+.+...          -.|+   ...+..+...+...|++++|+++++++ ...| +...
T Consensus       316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l  395 (765)
T PRK10049        316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL  395 (765)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            67788999999999999999975421          0122   235667888999999999999999987 3334 6778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +..+...+...|+.++|+..++++++++|+++..+..++..+.+.|++++|..+++.+.+.
T Consensus       396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999999999998864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=2.9e-15  Score=165.33  Aligned_cols=435  Identities=11%  Similarity=0.009  Sum_probs=299.7

Q ss_pred             hHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076           52 KNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD  129 (662)
Q Consensus        52 ~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  129 (662)
                      +...-..+.+.|++++|+..|+  ....|+...|..+..++...|++++|.+.+...++.. +.+...+..+..+|...|
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg  208 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG  208 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence            3356678889999999999999  4566788889999999999999999999999999864 335668888999999999


Q ss_pred             ChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076          130 SVDDARHVFDKTRRRT---IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG  206 (662)
Q Consensus       130 ~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a  206 (662)
                      ++++|..-|......+   ......++.-+..    ..+...........+...|........+...    .    ....
T Consensus       209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~----~~~~  276 (615)
T TIGR00990       209 KYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----R----PKPR  276 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----c----CCcc
Confidence            9999998876543221   1111112211111    2233333333332111122222112221111    1    0111


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHH------HhcCCHHHHHHHHHcCCC-----C-CHhHHHHHHHHHHHcCChhHHHH
Q 006076          207 KEIHASVLRHGYNGIVHIMTTLIDMY------ARFGCVMYAGFVFSQMAV-----K-NVVSWSAMIACYARNGMAFEALE  274 (662)
Q Consensus       207 ~~~~~~~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~  274 (662)
                      ..-+....+  ..++  ....++..+      ...+++++|.+.|+...+     + +...|+.+...+...|++++|+.
T Consensus       277 ~~~~~~~~~--~~~~--~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~  352 (615)
T TIGR00990       277 PAGLEDSNE--LDEE--TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA  352 (615)
T ss_pred             hhhhhcccc--cccc--cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            111111000  1111  111111111      234688999999987753     2 45678888899999999999999


Q ss_pred             HHHHHhhhhCCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076          275 LFREMIMESHDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK  353 (662)
Q Consensus       275 ~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~  353 (662)
                      .|++.  ..  ..|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+
T Consensus       353 ~~~ka--l~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~  427 (615)
T TIGR00990       353 DLSKS--IE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID  427 (615)
T ss_pred             HHHHH--HH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99987  32  3455 5577778888889999999999999998874 44578889999999999999999999998763


Q ss_pred             --C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh--
Q 006076          354 --R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV--  427 (662)
Q Consensus       354 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--  427 (662)
                        | +...|..+...+.+.|++++|+..|++....  .| +...+..+..++...|++++|...|+...+.   .|+.  
T Consensus       428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~  502 (615)
T TIGR00990       428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKP  502 (615)
T ss_pred             cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCcccc
Confidence              3 5667888899999999999999999999874  45 4578888889999999999999999998753   3321  


Q ss_pred             ------HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          428 ------EHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       428 ------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                            ..++.....+...|++++|.+++++. .+.|+ ...+..+...+...|++++|...++++.++.+.....    
T Consensus       503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~----  578 (615)
T TIGR00990       503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL----  578 (615)
T ss_pred             ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH----
Confidence                  11222233444579999999999986 55564 4578899999999999999999999999987753322    


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 006076          500 ADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       500 ~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                          .....+.+|.++.....+
T Consensus       579 ----~~a~~~~~a~~~~~~~~~  596 (615)
T TIGR00990       579 ----VQAISYAEATRTQIQVQE  596 (615)
T ss_pred             ----HHHHHHHHHHHHHHHHHH
Confidence                122345566666544443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=1.5e-14  Score=159.44  Aligned_cols=424  Identities=11%  Similarity=0.048  Sum_probs=290.1

Q ss_pred             HHHhCCCchHHHHHHh--cCCCCCH--hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 006076           58 SLCKQGNLRQALDVLS--IEPNPTQ--HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDD  133 (662)
Q Consensus        58 ~~~~~g~~~~A~~~~~--~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  133 (662)
                      ...++|+++.|++.|+  ....|+.  ..+ .++..+...|+.++|...++..... -.........+...|...|++++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence            4467888888888888  3334443  233 6777777788888888888887721 12222333334567778889999


Q ss_pred             HHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHH
Q 006076          134 ARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH  210 (662)
Q Consensus       134 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~  210 (662)
                      |.++|+++.+.   +...+..++..+...++.++|++.++++...    .|+...+..+...+...+.    ..++.+.+
T Consensus       121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~~~~~l~layL~~~~~~----~~~AL~~~  192 (822)
T PRK14574        121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER----DPTVQNYMTLSYLNRATDR----NYDALQAS  192 (822)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----CcchHHHHHHHHHHHhcch----HHHHHHHH
Confidence            99988887653   4556677778888888889999888888754    5565555333323222333    54588888


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CHhHHHH----HHHHHHH---------cCC---hhHHH
Q 006076          211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSA----MIACYAR---------NGM---AFEAL  273 (662)
Q Consensus       211 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~----li~~~~~---------~g~---~~~A~  273 (662)
                      +.+++.. +.+...+..++....+.|-...|.++..+-+.- +...+.-    -+.-.++         .++   .+.|+
T Consensus       193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al  271 (822)
T PRK14574        193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL  271 (822)
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            8888875 666777788888888888888888887765521 1111000    0111111         112   24455


Q ss_pred             HHHHHHhhhhCCCcCCH-HH----HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 006076          274 ELFREMIMESHDLCPNS-VT----MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVF  348 (662)
Q Consensus       274 ~~~~~m~~~~~~~~p~~-~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~  348 (662)
                      .-++.+. ...+-.|.. .-    ..--+-++...++..++.+.++.+...+.+....+-.++.++|...+++++|+.+|
T Consensus       272 a~~~~l~-~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~  350 (822)
T PRK14574        272 ADYQNLL-TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL  350 (822)
T ss_pred             HHHHHHH-hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            5555553 112222322 22    22345567788889999999999988887766778888999999999999999999


Q ss_pred             hhCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--CHh-HHHHHHHHHhcCC
Q 006076          349 DHMDKR---------DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-----------SP--SPI-SFVSVLGACSHAG  405 (662)
Q Consensus       349 ~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g  405 (662)
                      .++..+         +......|.-+|...+++++|..+++++.+.-.           .|  |-. .+..+...+...|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g  430 (822)
T PRK14574        351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN  430 (822)
T ss_pred             HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            887431         233356788888899999999999999887311           12  222 2334456678889


Q ss_pred             CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006076          406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASK  483 (662)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~  483 (662)
                      ++.+|.+.++.+....  +-|......+.+.+...|.+.+|++.++.. ...| +..+......+....+++++|..+.+
T Consensus       431 dl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~  508 (822)
T PRK14574        431 DLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD  508 (822)
T ss_pred             CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9999999999987543  558888889999999999999999998766 3455 44556677777888899999999999


Q ss_pred             HHHhcCCCCcch
Q 006076          484 RLFELEPTNAGN  495 (662)
Q Consensus       484 ~~~~~~p~~~~~  495 (662)
                      .+.+..|+++.+
T Consensus       509 ~l~~~~Pe~~~~  520 (822)
T PRK14574        509 DVISRSPEDIPS  520 (822)
T ss_pred             HHHhhCCCchhH
Confidence            999999987643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.77  E-value=5.4e-15  Score=162.73  Aligned_cols=325  Identities=11%  Similarity=-0.026  Sum_probs=262.7

Q ss_pred             hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHH
Q 006076          185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIA  261 (662)
Q Consensus       185 t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~  261 (662)
                      ....++..+.+.|+    .+.|..++...+... +.+......++......|++++|...|+++..  | +...|..+..
T Consensus        44 ~~~~~~~~~~~~g~----~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~  118 (656)
T PRK15174         44 NIILFAIACLRKDE----TDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS  118 (656)
T ss_pred             CHHHHHHHHHhcCC----cchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            45556667777888    999999999988875 33455556666777789999999999999853  3 5678889999


Q ss_pred             HHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076          262 CYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK  340 (662)
Q Consensus       262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  340 (662)
                      .+.+.|++++|+..|++.  ..  +.| +...+..+...+...|++++|...++.+......+ ...+..+. .+...|+
T Consensus       119 ~l~~~g~~~~Ai~~l~~A--l~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~-~l~~~g~  192 (656)
T PRK15174        119 VLLKSKQYATVADLAEQA--WL--AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCL-SFLNKSR  192 (656)
T ss_pred             HHHHcCCHHHHHHHHHHH--HH--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-HHHHcCC
Confidence            999999999999999988  33  334 45677778888999999999999999887765433 33333333 4788999


Q ss_pred             hHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHH----HHH
Q 006076          341 LELGQCVFDHMDKR----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE----GKM  412 (662)
Q Consensus       341 ~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~  412 (662)
                      +++|...++.+.+.    +...+..+...+...|++++|+..|+++.... +.+...+..+..++...|++++    |..
T Consensus       193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~  271 (656)
T PRK15174        193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE  271 (656)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence            99999999987642    33345556778899999999999999999853 2345677778889999999986    899


Q ss_pred             HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076          413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP  490 (662)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  490 (662)
                      .|+...+..  +.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|
T Consensus       272 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P  349 (656)
T PRK15174        272 HWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG  349 (656)
T ss_pred             HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            999987542  346788999999999999999999999987 3455 456778888999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          491 TNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      +++..+..++.++...|++++|...++...+..
T Consensus       350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            987777778899999999999999999887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.76  E-value=4.5e-14  Score=155.78  Aligned_cols=428  Identities=13%  Similarity=0.066  Sum_probs=310.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHH-H--HHHHHh
Q 006076           82 TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNA-L--FRALTL  158 (662)
Q Consensus        82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-l--i~~~~~  158 (662)
                      .|...+. ..+.|++..|...+.+..+......+.++ .++..+...|+.++|+..+++...++...+.. +  ...|..
T Consensus        37 ~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         37 QYDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            3544444 45789999999999999987532223355 88899999999999999999988764444433 3  446777


Q ss_pred             cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006076          159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV  238 (662)
Q Consensus       159 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  238 (662)
                      .|++++|+++|+++.+..   +-+...+..+...+...+.    .++|.+.+..+.+.  .|+...+..++..+...++.
T Consensus       115 ~gdyd~Aiely~kaL~~d---P~n~~~l~gLa~~y~~~~q----~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~  185 (822)
T PRK14574        115 EKRWDQALALWQSSLKKD---PTNPDLISGMIMTQADAGR----GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN  185 (822)
T ss_pred             cCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHhhcCC----HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence            899999999999999762   2234455566677777777    99999999888776  45555565566666556777


Q ss_pred             HHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH------HHHHHHH-----HccC
Q 006076          239 MYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM------VSVLQAC-----AALA  304 (662)
Q Consensus       239 ~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~------~~ll~a~-----~~~~  304 (662)
                      .+|...++++.+  | +...+..+..+..+.|-...|+++..+-  . .-+.|...-.      ...+.--     ....
T Consensus       186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p-~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~  262 (822)
T PRK14574        186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN--P-NLVSAEHYRQLERDAAAEQVRMAVLPTRSETE  262 (822)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC--c-cccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence            679999999864  3 5667788889999999999999887744  1 1111111111      1111100     0112


Q ss_pred             CH---HHHHHHHHHHHHh-CCCCc-hh-HHHHH---HHHHHhcCChHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCC
Q 006076          305 AL---EQGKMIHGYILRR-GLDSI-LP-VVSAL---VTMYARCGKLELGQCVFDHMDKRD----VVSWNSLISSYGVHGY  371 (662)
Q Consensus       305 ~~---~~a~~~~~~~~~~-g~~~~-~~-~~~~l---i~~y~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~  371 (662)
                      ++   +.|..-++.+... +-.|. .. ...+.   +-++.+.|++.++++.|+.++.+.    ..+--++.++|...++
T Consensus       263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~  342 (822)
T PRK14574        263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL  342 (822)
T ss_pred             hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence            23   3344444444432 22232 12 23333   345678899999999999998432    2355678899999999


Q ss_pred             hHHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC----------CCC---hHHHHHH
Q 006076          372 GGKAIQIFKEMIYHG-----VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI----------RPS---VEHYACM  433 (662)
Q Consensus       372 ~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l  433 (662)
                      +++|+.+|+++....     ..++......|..|+...+++++|..+++.+.+....          .|+   ...+..+
T Consensus       343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~  422 (822)
T PRK14574        343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL  422 (822)
T ss_pred             cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence            999999999997643     1223334578899999999999999999999752210          122   2345667


Q ss_pred             HHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076          434 VDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE  511 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  511 (662)
                      +..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|+..++.+..++|++..+...++..+...|+|++
T Consensus       423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~  502 (822)
T PRK14574        423 VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ  502 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence            88899999999999999998 2334 888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 006076          512 VKRVKRLLEARG  523 (662)
Q Consensus       512 A~~~~~~m~~~~  523 (662)
                      |.++.+.+.+..
T Consensus       503 A~~~~~~l~~~~  514 (822)
T PRK14574        503 MELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHHHhhC
Confidence            999998876643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=9.4e-13  Score=126.70  Aligned_cols=301  Identities=14%  Similarity=0.140  Sum_probs=224.9

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh--cCCC-------------------------hHH
Q 006076           81 HTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS--HFDS-------------------------VDD  133 (662)
Q Consensus        81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--~~g~-------------------------~~~  133 (662)
                      .+=+.|++. ...|.+.++--+++.|...|.+.++.+-..|+..-+  ....                         -+-
T Consensus       117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v  195 (625)
T KOG4422|consen  117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV  195 (625)
T ss_pred             cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence            344555553 456889999999999999988777776665554322  1111                         112


Q ss_pred             HHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHH
Q 006076          134 ARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV  213 (662)
Q Consensus       134 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~  213 (662)
                      |. ++-+...+...++..||.|+++--..+.|.++|++-...  ..+.+..+||.++.+.+        +..++.+..+|
T Consensus       196 Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S--------~~~~K~Lv~EM  264 (625)
T KOG4422|consen  196 AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASS--------YSVGKKLVAEM  264 (625)
T ss_pred             HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHH--------hhccHHHHHHH
Confidence            33 333344456789999999999999999999999999988  78899999999998754        55668999999


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHc----C----CCCCHhHHHHHHHHHHHcCChhH-HHHHHHHHhh--h
Q 006076          214 LRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ----M----AVKNVVSWSAMIACYARNGMAFE-ALELFREMIM--E  282 (662)
Q Consensus       214 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~----~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~--~  282 (662)
                      +...+.||..|+|+++....+.|+++.|.+.+-+    |    .+|...+|..+|..+.+.+++.+ |..++.++..  .
T Consensus       265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt  344 (625)
T KOG4422|consen  265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT  344 (625)
T ss_pred             HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence            9999999999999999999999999887765544    4    26889999999999999988755 4444444421  2


Q ss_pred             hCCCcC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006076          283 SHDLCP----NSVTMVSVLQACAALAALEQGKMIHGYILRRG----LDSI---LPVVSALVTMYARCGKLELGQCVFDHM  351 (662)
Q Consensus       283 ~~~~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m  351 (662)
                      ...++|    |..-|.+.++.|.++.+.+.|.+++.......    +.|+   .+-|..+.+..+....++.-.+.++.|
T Consensus       345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l  424 (625)
T KOG4422|consen  345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL  424 (625)
T ss_pred             cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222333    45678889999999999999999998775321    2232   345667888888888889989999988


Q ss_pred             CC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076          352 DK----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS  393 (662)
Q Consensus       352 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  393 (662)
                      ..    |+..+-..++.+....|.++-.-+++.+|...|..-+...
T Consensus       425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l  470 (625)
T KOG4422|consen  425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL  470 (625)
T ss_pred             ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence            63    6667777778888888888888888888887764444333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.67  E-value=5.5e-13  Score=140.91  Aligned_cols=456  Identities=13%  Similarity=0.097  Sum_probs=285.9

Q ss_pred             hHHHHHHHHhCCCchHHHHHHhc------CCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHH
Q 006076           52 KNELIQSLCKQGNLRQALDVLSI------EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL--VTKLIN  123 (662)
Q Consensus        52 ~~~li~~~~~~g~~~~A~~~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~  123 (662)
                      -|.|.+-|.-.|+++.++.+...      ....-..+|-.+.+++-..|+++.|...+-...+..  ++.++  +--|.+
T Consensus       273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQ  350 (1018)
T KOG2002|consen  273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQ  350 (1018)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhH
Confidence            34466666666777777666651      111123446666667777777777777776665543  33333  334567


Q ss_pred             HhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcC----CccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhC
Q 006076          124 VYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAG----RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS  196 (662)
Q Consensus       124 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~  196 (662)
                      +|.+.|+++.+...|+.+...   +..+--.|...|+..+    ..+.|..++.+..+.   .+.|...|..+-..+-..
T Consensus       351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e~~  427 (1018)
T KOG2002|consen  351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHhc
Confidence            777777777777777665543   2334444444454443    335555555555443   233444444444443332


Q ss_pred             CCCccchHHHHHHHH----HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-------CH------hHHHHH
Q 006076          197 SCGFSLLKHGKEIHA----SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-------NV------VSWSAM  259 (662)
Q Consensus       197 ~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~l  259 (662)
                      .     .......+.    .+...+-.+.+.+.|.+...+...|+++.|...|++....       |.      .+-..+
T Consensus       428 d-----~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl  502 (1018)
T KOG2002|consen  428 D-----PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL  502 (1018)
T ss_pred             C-----hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence            2     222233332    3334454566677777777777778888777777665321       21      122234


Q ss_pred             HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076          260 IACYARNGMAFEALELFREMIMESHDLCPNSVT-MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC  338 (662)
Q Consensus       260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  338 (662)
                      ...+-..++.+.|.+.|..+.  ..  .|+-++ |..++......+...+|...+..+.... ..++.+++-+.+.|.+.
T Consensus       503 arl~E~l~~~~~A~e~Yk~Il--ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k  577 (1018)
T KOG2002|consen  503 ARLLEELHDTEVAEEMYKSIL--KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKK  577 (1018)
T ss_pred             HHHHHhhhhhhHHHHHHHHHH--HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhh
Confidence            445555667777777777773  22  244332 3333322233456677777777776653 44566777777788888


Q ss_pred             CChHHHHHHHhhCC-----CCChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          339 GKLELGQCVFDHMD-----KRDVVSWNSLISSYGV------------HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       339 g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      ..+..|.+-|..+.     .+|..+.-+|.+.|.+            .+..++|+++|.+.++.. +-|...-+.+.-.+
T Consensus       578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVL  656 (1018)
T KOG2002|consen  578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVL  656 (1018)
T ss_pred             hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhh
Confidence            88888887555543     2455555555554432            345778999998888742 33556677777788


Q ss_pred             hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHH
Q 006076          402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPGPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~  477 (662)
                      +..|++.+|..+|..+.+..  .....+|-.+...|..+|++-.|+++|+..    .-+.+..+...|..++...|.+.+
T Consensus       657 A~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e  734 (1018)
T KOG2002|consen  657 AEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE  734 (1018)
T ss_pred             hhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence            89999999999999997643  345678888999999999999999999875    224477788889999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHH-------------------HHHhcCChHHHHHHHHHHHhCCCc
Q 006076          478 AERASKRLFELEPTNAGNYVLLAD-------------------VYAAADMWDEVKRVKRLLEARGLQ  525 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~-------------------~~~~~g~~~~A~~~~~~m~~~~~~  525 (662)
                      |.+.+..+..+.|.++..-..++-                   .....+..++|.++|..|...+-+
T Consensus       735 ak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  735 AKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999988765444333                   233445678888999988876543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.67  E-value=6.1e-13  Score=140.54  Aligned_cols=433  Identities=12%  Similarity=0.044  Sum_probs=287.8

Q ss_pred             CCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---C-cchHH
Q 006076           77 NPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQ--DPFLVTKLINVYSHFDSVDDARHVFDKTRRR---T-IYVWN  150 (662)
Q Consensus        77 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~  150 (662)
                      +-|+...+.|...+.-.|+++.+..+...++.....-  -...|=.+.++|-..|++++|...|-+..+.   + +..+-
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~  346 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV  346 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence            3455566666666666777777777777666543111  1123445667777777777777777554432   2 34455


Q ss_pred             HHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076          151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLID  230 (662)
Q Consensus       151 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  230 (662)
                      .|...|.+.|+.+.+...|+.....   .+-+..|...+-..|+..+......+.|..+....++.- +.|...|-.+..
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~---~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq  422 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQ---LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ  422 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHh---CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence            5667777777777777777777654   223334444444444444322222566666666655543 456666666666


Q ss_pred             HHHhcCCHH------HHHHHHHc-CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh-hCCCcCCH-----H-HHHHH
Q 006076          231 MYARFGCVM------YAGFVFSQ-MAVKNVVSWSAMIACYARNGMAFEALELFREMIME-SHDLCPNS-----V-TMVSV  296 (662)
Q Consensus       231 ~y~~~g~~~------~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~p~~-----~-t~~~l  296 (662)
                      +|-...-+.      .|..++.. +....+...|.+..-+...|.+++|...|...... .....+|.     . +--.+
T Consensus       423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl  502 (1018)
T KOG2002|consen  423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL  502 (1018)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence            665543322      23322222 12345677888888888889999999888877311 00122333     1 22223


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-------CChHHHHHHHhhCC---CCChhHHHHHHHHH
Q 006076          297 LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARC-------GKLELGQCVFDHMD---KRDVVSWNSLISSY  366 (662)
Q Consensus       297 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~m~---~~~~~~~~~li~~~  366 (662)
                      ....-..++.+.|.+.+..+++..  |      ..|++|.+.       +...+|...+....   ..|+..|+-+...|
T Consensus       503 arl~E~l~~~~~A~e~Yk~Ilkeh--p------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~  574 (1018)
T KOG2002|consen  503 ARLLEELHDTEVAEEMYKSILKEH--P------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH  574 (1018)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHC--c------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence            333456678888889998888763  2      244555444       56678888888765   35677788788788


Q ss_pred             HhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhcC------------CCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076          367 GVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHA------------GLVEEGKMLFESMRKEHMIRPSVEHYACM  433 (662)
Q Consensus       367 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  433 (662)
                      .....+..|.+-|....+.- ..+|..+..+|.+.|...            +..++|+++|..+.+..  +.|...-|-+
T Consensus       575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGI  652 (1018)
T KOG2002|consen  575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGI  652 (1018)
T ss_pred             HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccch
Confidence            88888888888776665532 236777777777765432            45678899998887543  5588888999


Q ss_pred             HHHHhhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCCh
Q 006076          434 VDLLGRANKLEEAAKIIEDLR--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL--EPTNAGNYVLLADVYAAADMW  509 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~  509 (662)
                      .-.++..|++.+|.++|.+..  ......+|-.+...|...|++..|.+.|+..+..  ..+++.....|+.++.+.|++
T Consensus       653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~  732 (1018)
T KOG2002|consen  653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL  732 (1018)
T ss_pred             hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence            999999999999999999883  2235568999999999999999999999998763  244677888999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 006076          510 DEVKRVKRLLEARG  523 (662)
Q Consensus       510 ~~A~~~~~~m~~~~  523 (662)
                      .+|.+.........
T Consensus       733 ~eak~~ll~a~~~~  746 (1018)
T KOG2002|consen  733 QEAKEALLKARHLA  746 (1018)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999888776543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=2e-13  Score=131.95  Aligned_cols=410  Identities=12%  Similarity=0.113  Sum_probs=274.6

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHhhcCCChHHHHHHHhc----CCCCC----cchHHHHHHH
Q 006076           85 LLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV-TKLINVYSHFDSVDDARHVFDK----TRRRT----IYVWNALFRA  155 (662)
Q Consensus        85 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~----~~~~~----~~~~~~li~~  155 (662)
                      .|..-|.......+|...++-+++...-|+.-.. -.+.+.|.+...+.+|++.++.    .|.-+    +...|.+.-.
T Consensus       206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt  285 (840)
T KOG2003|consen  206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT  285 (840)
T ss_pred             HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence            3444555566677888888888887766665432 3455778888899999988753    33222    2345555567


Q ss_pred             HHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc------------hh
Q 006076          156 LTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI------------VH  223 (662)
Q Consensus       156 ~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~------------~~  223 (662)
                      +.+.|+++.|+.-|+...+.    .|+-.+-..++-.+...++    -++.++.|..++.....+|            ..
T Consensus       286 fiq~gqy~dainsfdh~m~~----~pn~~a~~nl~i~~f~i~d----~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~  357 (840)
T KOG2003|consen  286 FIQAGQYDDAINSFDHCMEE----APNFIAALNLIICAFAIGD----AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN  357 (840)
T ss_pred             EEecccchhhHhhHHHHHHh----CccHHhhhhhhhhheecCc----HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence            88899999999999988765    6776655445544555567    8888888888876533222            22


Q ss_pred             HHHHHH-----HHHHhcCC--HHHH----HHHHHcCCCCCHh---HHH------------------HHHHHHHHcCChhH
Q 006076          224 IMTTLI-----DMYARFGC--VMYA----GFVFSQMAVKNVV---SWS------------------AMIACYARNGMAFE  271 (662)
Q Consensus       224 ~~~~li-----~~y~~~g~--~~~A----~~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~  271 (662)
                      ..|--|     .-.-+...  -+++    .++..-+..||-.   -|.                  .-..-|.++|+++.
T Consensus       358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~  437 (840)
T KOG2003|consen  358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG  437 (840)
T ss_pred             HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence            222111     11111111  1111    1222222223211   011                  11234788999999


Q ss_pred             HHHHHHHHhhhhCCCcCCH--HHHHHHHHHH----------------------------------HccCCHHHHHHHHHH
Q 006076          272 ALELFREMIMESHDLCPNS--VTMVSVLQAC----------------------------------AALAALEQGKMIHGY  315 (662)
Q Consensus       272 A~~~~~~m~~~~~~~~p~~--~t~~~ll~a~----------------------------------~~~~~~~~a~~~~~~  315 (662)
                      |+++++-.  ....-+.-.  .+-.+++.-.                                  ...|+++.|...+.+
T Consensus       438 aieilkv~--~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke  515 (840)
T KOG2003|consen  438 AIEILKVF--EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE  515 (840)
T ss_pred             HHHHHHHH--HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence            98888776  322211111  1111111111                                  134677888888887


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 006076          316 ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI  392 (662)
Q Consensus       316 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  392 (662)
                      ++...-......|| +.-.+-+.|++++|.+.|-.+.   ..++...-.+.+.|-...+..+|++++.+.... ++.|+.
T Consensus       516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~  593 (840)
T KOG2003|consen  516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA  593 (840)
T ss_pred             HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence            77654333333333 3335677889999988887654   456666777788888888889999988776653 444567


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHH-H
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC-R  470 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~  470 (662)
                      .+..|...|-+.|+-.+|.+.+-.--+ + ++.+.++..-|..-|....-+++|+.+|++. -++|+.+-|..|+..| +
T Consensus       594 ilskl~dlydqegdksqafq~~ydsyr-y-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r  671 (840)
T KOG2003|consen  594 ILSKLADLYDQEGDKSQAFQCHYDSYR-Y-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR  671 (840)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhccc-c-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            777888889999999999988776542 2 5778999999999999999999999999988 4789999999999877 5


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          471 IHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      +.|++..|..+++.+...-|.|..+..-|+.++...|.
T Consensus       672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            67999999999999999999999999999999888874

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.61  E-value=6.6e-11  Score=119.94  Aligned_cols=461  Identities=12%  Similarity=0.052  Sum_probs=310.0

Q ss_pred             HHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHhhc
Q 006076           55 LIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL----TDNGFDQDPFLVTKLINVYSH  127 (662)
Q Consensus        55 li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~  127 (662)
                      |..+|++..-|+.|..++.   ..++-+...|.+....--..|+.+....+...-    ...|+..+..-|-.=...+-+
T Consensus       412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~  491 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED  491 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence            4555566666666666665   455556666666555555566666555555433    234555555555544455555


Q ss_pred             CCChHHHHHHHhcCCC-----C-CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCcc
Q 006076          128 FDSVDDARHVFDKTRR-----R-TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFS  201 (662)
Q Consensus       128 ~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~  201 (662)
                      .|..-.+..+......     . --.+|+.-...|.+.+.++-|..+|...++.   .+-+...+......=-..|.   
T Consensus       492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt---  565 (913)
T KOG0495|consen  492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGT---  565 (913)
T ss_pred             cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCc---
Confidence            5555555554443321     1 2246777777777777777777777777654   22233333333333233344   


Q ss_pred             chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006076          202 LLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFRE  278 (662)
Q Consensus       202 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~  278 (662)
                       .+....+++.++..- +-....|-....-+-..|++..|+.++.+.-+   .+...|-+-+..-..+..+++|..+|.+
T Consensus       566 -~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak  643 (913)
T KOG0495|consen  566 -RESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK  643 (913)
T ss_pred             -HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence             677777777776653 34455566666666777888888877776543   2556677777777888888888888886


Q ss_pred             HhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C
Q 006076          279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-D  355 (662)
Q Consensus       279 m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~  355 (662)
                      .  +.  ..|+...|.--...---+++.++|.+++++.++. ++.-...|-.+...+-+.++++.|.+.|..-.+  | .
T Consensus       644 a--r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~  718 (913)
T KOG0495|consen  644 A--RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS  718 (913)
T ss_pred             H--hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            6  33  4466666655555555677788888888777765 333455677777778888888888887776554  4 3


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076          356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD  435 (662)
Q Consensus       356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  435 (662)
                      +..|-.|...--+.|...+|..++++.+..+ +-|...|...+..-.+.|+.+.|..+.....++  .+.+...|..-|.
T Consensus       719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~  795 (913)
T KOG0495|consen  719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIW  795 (913)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHH
Confidence            4467777777777778888888888877653 335677788888888888888888888777765  3556777877788


Q ss_pred             HHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006076          436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV  515 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  515 (662)
                      +..+.++-..+.+.+++..  .|+.+..++...+-...+++.|..-|++.+..+|++..++..+-..+.+.|.-++-.++
T Consensus       796 le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev  873 (913)
T KOG0495|consen  796 LEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV  873 (913)
T ss_pred             hccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence            8877777666666666653  46666667777778888999999999999999999999999999999999999998888


Q ss_pred             HHHHHhCCCcCCCceeEEEE
Q 006076          516 KRLLEARGLQKVPGRSRIEV  535 (662)
Q Consensus       516 ~~~m~~~~~~~~~~~s~~~~  535 (662)
                      +.......  |..|..|..+
T Consensus       874 ~~~c~~~E--P~hG~~W~av  891 (913)
T KOG0495|consen  874 LKKCETAE--PTHGELWQAV  891 (913)
T ss_pred             HHHHhccC--CCCCcHHHHH
Confidence            88766432  3445666643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=9.2e-11  Score=113.25  Aligned_cols=357  Identities=12%  Similarity=0.076  Sum_probs=215.6

Q ss_pred             HHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC----CCCc
Q 006076           71 VLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR----RRTI  146 (662)
Q Consensus        71 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~  146 (662)
                      ++-...+.+..||..++.+.++-...+.|++++.+..+...+.+..++|.+|.+-+-..+    .++..+|.    .||.
T Consensus       198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl  273 (625)
T KOG4422|consen  198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL  273 (625)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence            333344556677777777777777777777777777666666777777777765543322    33443333    4677


Q ss_pred             chHHHHHHHHHhcCCcc----HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchH-HHHHHHHHHHH----hC
Q 006076          147 YVWNALFRALTLAGRGE----EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLK-HGKEIHASVLR----HG  217 (662)
Q Consensus       147 ~~~~~li~~~~~~g~~~----~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~-~a~~~~~~~~~----~g  217 (662)
                      .|+|+++++.++.|+++    .|++++.+|++-  |+.|.-.+|..+|....+.++    .. .+..+...+..    ..
T Consensus       274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKei--GVePsLsSyh~iik~f~re~d----p~k~as~~i~dI~N~ltGK~  347 (625)
T KOG4422|consen  274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEI--GVEPSLSSYHLIIKNFKRESD----PQKVASSWINDIQNSLTGKT  347 (625)
T ss_pred             HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh--CCCcchhhHHHHHHHhcccCC----chhhhHHHHHHHHHhhccCc
Confidence            78888888777777664    456777888888  888888888888887777666    32 23333333322    12


Q ss_pred             CC----CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-----------CHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076          218 YN----GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-----------NVVSWSAMIACYARNGMAFEALELFREMIME  282 (662)
Q Consensus       218 ~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  282 (662)
                      +.    .|...+.+-++.+.+..+.+-|.++-.-....           ...-|..+....++....+.-+..|+.|  .
T Consensus       348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--V  425 (625)
T KOG4422|consen  348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--V  425 (625)
T ss_pred             ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence            22    24455566677777777887777765544321           1234667777888888899999999999  6


Q ss_pred             hCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHH
Q 006076          283 SHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSL  362 (662)
Q Consensus       283 ~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l  362 (662)
                      -.-+-|+..+...+++|....+.++-..+++..++..|.........-+...+++..            ..|+...-.-+
T Consensus       426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql  493 (625)
T KOG4422|consen  426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQL  493 (625)
T ss_pred             cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHH
Confidence            666778999999999999999999999999998888774333222222222222211            02322211111


Q ss_pred             HHHHHh--cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH---HHHHHH
Q 006076          363 ISSYGV--HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA---CMVDLL  437 (662)
Q Consensus       363 i~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~  437 (662)
                      -..+++  ..-.+.....-.+|.+..+.|  ...+.++.-+.+.|..++|.++|..+.++..--|.....+   -+++.-
T Consensus       494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a  571 (625)
T KOG4422|consen  494 QVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA  571 (625)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence            111111  001111122223444443433  3444555556677777777777777754433334333444   444455


Q ss_pred             hhcCCHHHHHHHHHhc
Q 006076          438 GRANKLEEAAKIIEDL  453 (662)
Q Consensus       438 ~~~g~~~~A~~~~~~m  453 (662)
                      .+.+....|...++-|
T Consensus       572 ~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  572 KVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HhcCCHHHHHHHHHHH
Confidence            5666777777776665

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.55  E-value=2.7e-14  Score=141.63  Aligned_cols=255  Identities=15%  Similarity=0.115  Sum_probs=113.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076          259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ-ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR  337 (662)
Q Consensus       259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  337 (662)
                      +...+.+.|++++|++++.+-  .....+|+...|..++. .+...++.+.|.+.++.+...+.. ++..+..++.. ..
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~--~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKA--AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence            345566777777777777543  22221354444444333 344567778888888777766533 55567777776 68


Q ss_pred             cCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          338 CGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      .+++++|.+++...-  .++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            899999998887663  3567778888899999999999999999987533 3456677888888899999999999999


Q ss_pred             HHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          415 ESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLR--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       415 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      +...+.   .| |......++..+...|+.+++.++++...  .+.|+..|..+..++...|+.++|...+++.....|+
T Consensus       170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            999864   45 58889999999999999999888887762  2456778899999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          492 NAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      |+.....+++++...|+.++|.+++++.-
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -HHHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            99999999999999999999999988654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.53  E-value=4e-10  Score=118.95  Aligned_cols=470  Identities=9%  Similarity=-0.013  Sum_probs=288.0

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVH  103 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  103 (662)
                      +.++|.+++ .++...|+...-  +|-+|-..|-+.|+.++++..+-   --.+-|..-|..+-.-..+.|++.+|+-.+
T Consensus       154 ~~eeA~~i~-~EvIkqdp~~~~--ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy  230 (895)
T KOG2076|consen  154 DLEEAEEIL-MEVIKQDPRNPI--AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY  230 (895)
T ss_pred             CHHHHHHHH-HHHHHhCccchh--hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            999999999 888888876554  49999999999999999998776   333446678888888888999999999999


Q ss_pred             HHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCc----chHHH----HHHHHHhcCCccHHHHHHHHHhhC
Q 006076          104 SHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI----YVWNA----LFRALTLAGRGEEVLELYRRMNGT  175 (662)
Q Consensus       104 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~----~~~~~----li~~~~~~g~~~~A~~l~~~m~~~  175 (662)
                      .++++.. +++....-.-..+|-+.|+...|..-|.++.+.++    .-.-.    .+..|...++-+.|++.+......
T Consensus       231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            9999975 34444444567889999999999988887765433    11222    344566666668888888877663


Q ss_pred             CCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHh---------------------------CCCCchhH-HHH
Q 006076          176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH---------------------------GYNGIVHI-MTT  227 (662)
Q Consensus       176 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~  227 (662)
                      + +-..+..+++.+...+.....    .+.+..........                           ++.++..+ ...
T Consensus       310 ~-~~~~~~ed~ni~ael~l~~~q----~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~  384 (895)
T KOG2076|consen  310 E-KDEASLEDLNILAELFLKNKQ----SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM  384 (895)
T ss_pred             c-cccccccHHHHHHHHHHHhHH----HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence            1 223334445555555555444    66655555444431                           12223233 111


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHcc
Q 006076          228 LIDMYARFGCVMYAGFVFSQMA----VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAAL  303 (662)
Q Consensus       228 li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~  303 (662)
                      +--...+.+...++..-|-.-.    ..++..|..+..+|.+.|++.+|+.+|..+  .....--+...|..+...+-..
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i--~~~~~~~~~~vw~~~a~c~~~l  462 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI--TNREGYQNAFVWYKLARCYMEL  462 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH--hcCccccchhhhHHHHHHHHHH
Confidence            1122223344444444332221    224556778888899999999999999888  4443334567787888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh------------hHHHHHHHHHHhcCC
Q 006076          304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV------------VSWNSLISSYGVHGY  371 (662)
Q Consensus       304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------------~~~~~li~~~~~~g~  371 (662)
                      |..++|.+.++.++... +.+..+--+|-..|-+.|+.++|.+++..+..||.            ..--.....|.+.|+
T Consensus       463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk  541 (895)
T KOG2076|consen  463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK  541 (895)
T ss_pred             hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence            99999999998888764 33455666777888889999999999988775552            112223455667777


Q ss_pred             hHHHHHHHHHHHHcCC-----CC-----------------CHhHHHHHHHHHhcCCCHHHHHHHHH-----HhHHhcCCC
Q 006076          372 GGKAIQIFKEMIYHGV-----SP-----------------SPISFVSVLGACSHAGLVEEGKMLFE-----SMRKEHMIR  424 (662)
Q Consensus       372 ~~~A~~~~~~m~~~g~-----~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~-----~~~~~~~~~  424 (662)
                      .++=+..-..|+..+.     -|                 ...+.-.+..+-.+.++.....+...     ......++.
T Consensus       542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls  621 (895)
T KOG2076|consen  542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS  621 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence            7765555544443211     01                 11122222223333322111111110     001111222


Q ss_pred             CC--hHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C
Q 006076          425 PS--VEHYACMVDLLGRANKLEEAAKIIEDLR-----IEPGP---KVWGSLLGSCRIHCNVELAERASKRLFEL-----E  489 (662)
Q Consensus       425 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~  489 (662)
                      -+  -..+.-++..+++.+++++|+.+...+-     ..++.   ..=...+.++...+++..|....+.++..     +
T Consensus       622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~  701 (895)
T KOG2076|consen  622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD  701 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence            22  1355666777788888888887776651     12222   11234455566677788877777777654     4


Q ss_pred             CCCcchHHHHHHHHHhcCC
Q 006076          490 PTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       490 p~~~~~~~~l~~~~~~~g~  508 (662)
                      |--...|++..+...+.|+
T Consensus       702 ~~q~~l~n~~~s~~~~~~q  720 (895)
T KOG2076|consen  702 VYQLNLWNLDFSYFSKYGQ  720 (895)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            4444455544444444443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1.1e-09  Score=107.15  Aligned_cols=429  Identities=14%  Similarity=0.139  Sum_probs=310.0

Q ss_pred             hHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHH
Q 006076          116 FLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA  192 (662)
Q Consensus       116 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~  192 (662)
                      ..|-.-.+.=...+++..|+.+|+....   +++..|--.+..=.++.++..|..++++....  --..|..=|-.+. .
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y-m  150 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY-M  150 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH-H
Confidence            3333333333345677888999987654   57788888888889999999999999988765  2222333222211 1


Q ss_pred             HHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCHhHHHHHHHHHHHcCChh
Q 006076          193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAF  270 (662)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~  270 (662)
                      =-.+|+    +..|+++|..-..  ..|+...|++.|+.=.+-..++.|..++++..  .|++.+|--...-=.++|...
T Consensus       151 EE~LgN----i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~  224 (677)
T KOG1915|consen  151 EEMLGN----IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA  224 (677)
T ss_pred             HHHhcc----cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence            123455    9999999998775  48999999999999999999999999999864  789999988888888999999


Q ss_pred             HHHHHHHHHhhhhCC-CcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 006076          271 EALELFREMIMESHD-LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVF  348 (662)
Q Consensus       271 ~A~~~~~~m~~~~~~-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~  348 (662)
                      .|..+|.... ...| -.-+...|++...-=.+...++.|+-++..+++.=... ....|..+...--+-|+-...+++.
T Consensus       225 ~aR~VyerAi-e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I  303 (677)
T KOG1915|consen  225 LARSVYERAI-EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI  303 (677)
T ss_pred             HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence            9999998774 2222 11122334443333346778899999999998863222 2556666666666677765555432


Q ss_pred             --------hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHH---hcCCCH
Q 006076          349 --------DHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-------ISFVSVLGAC---SHAGLV  407 (662)
Q Consensus       349 --------~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~  407 (662)
                              +.+.+   -|-.+|--.+..-...|+.+...++|++.... ++|-.       ..|..+=-+|   ....++
T Consensus       304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~  382 (677)
T KOG1915|consen  304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV  382 (677)
T ss_pred             hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence                    22222   25568888888888889999999999999875 56632       2233332233   357899


Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHH----hhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076          408 EEGKMLFESMRKEHMIRPSVEHYACMVDLL----GRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERAS  482 (662)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  482 (662)
                      +.+.++++...+  -++....++..+--+|    .++.++..|.+++... +.-|...++...|..-.+.++++....++
T Consensus       383 ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLY  460 (677)
T KOG1915|consen  383 ERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLY  460 (677)
T ss_pred             HHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999875  2566667776666555    4788999999999876 77899999999999999999999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHH
Q 006076          483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLIN  561 (662)
Q Consensus       483 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (662)
                      ++.++.+|.+..++.-.+..=...|+++.|..+|.....+.....|..-|-..    -.|-.....+.....+|+.+.+
T Consensus       461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY----IdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY----IDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh----hhhhhhcchHHHHHHHHHHHHH
Confidence            99999999999999999988899999999999999988877655666655311    0133334445556666665544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.47  E-value=1.4e-08  Score=103.46  Aligned_cols=488  Identities=11%  Similarity=0.009  Sum_probs=329.4

Q ss_pred             hhhhccCC----CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhc---CCCCCHhhHHHHHHHHh
Q 006076           19 TNSIAHLP----PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSI---EPNPTQHTYELLLLSCT   91 (662)
Q Consensus        19 ~~li~~y~----~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~p~~~~~~~ll~~~~   91 (662)
                      |+++.-+.    +...|+.++ ....+.|+..+..  |-+-...--..|++..|..+...   ..+.+...|.-.+    
T Consensus       254 ~sm~p~~~~dl~DikKaR~ll-KSvretnP~hp~g--WIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----  326 (913)
T KOG0495|consen  254 NSMIPTSGGDLEDIKKARLLL-KSVRETNPKHPPG--WIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----  326 (913)
T ss_pred             HhcCCCccCcHHHHHHHHHHH-HHHHhcCCCCCch--HHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----
Confidence            44555555    777899999 8888888876666  64444445567888888887762   2333333332222    


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---------------------------hhcCCChHHHHHHHhcCCCC
Q 006076           92 HHNSLSDALNVHSHLTDNGFDQDPFLVTKLINV---------------------------YSHFDSVDDARHVFDKTRRR  144 (662)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---------------------------y~~~g~~~~A~~~f~~~~~~  144 (662)
                      +....+.|+.+....++.- +.++..|-.-.+.                           -......++|+-++.+..+-
T Consensus       327 RLhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec  405 (913)
T KOG0495|consen  327 RLHPPDVAKTVVANAVRFL-PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC  405 (913)
T ss_pred             hcCChHHHHHHHHHHHHhC-CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh
Confidence            2333444555555554431 1122222111111                           11122333344444332220


Q ss_pred             CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHH----HHhCCCC
Q 006076          145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASV----LRHGYNG  220 (662)
Q Consensus       145 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~----~~~g~~~  220 (662)
                      - .+-.-|.-+|++..-++.|..++++.++.   ++-+...+.+....=-..|.    .+....+...-    ...|+..
T Consensus       406 c-p~s~dLwlAlarLetYenAkkvLNkaRe~---iptd~~IWitaa~LEE~ngn----~~mv~kii~rgl~~L~~ngv~i  477 (913)
T KOG0495|consen  406 C-PQSMDLWLALARLETYENAKKVLNKAREI---IPTDREIWITAAKLEEANGN----VDMVEKIIDRGLSELQANGVEI  477 (913)
T ss_pred             c-cchHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHhhcceee
Confidence            0 01112233455566677777777777764   55566555544443334444    66666666543    3346666


Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHcCC-----CC-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHH
Q 006076          221 IVHIMTTLIDMYARFGCVMYAGFVFSQMA-----VK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTM  293 (662)
Q Consensus       221 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~  293 (662)
                      +...|-.=...+-+.|.+-.+..+.....     +. --.+|+.-...|.+.+.++-|..+|...  .  .+-| +...|
T Consensus       478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a--l--qvfp~k~slW  553 (913)
T KOG0495|consen  478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA--L--QVFPCKKSLW  553 (913)
T ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH--H--hhccchhHHH
Confidence            66666666666666677666666665543     11 2357888888888888888898888866  2  2334 44555


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcC
Q 006076          294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHG  370 (662)
Q Consensus       294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g  370 (662)
                      ......--..|..+.-..+++.++..- +-....+-....-+...|++..|+.++.+.-+  | +...|-+-+.....+.
T Consensus       554 lra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~  632 (913)
T KOG0495|consen  554 LRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEND  632 (913)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccc
Confidence            555555566788889999999888764 33445566666777788999999999887753  3 5568989999999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII  450 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  450 (662)
                      .++.|..+|.+...  ..|+...|.--+..---.++.++|.+++++..+.+  +.-...|-.+...+-+.++++.|.+.|
T Consensus       633 e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY  708 (913)
T KOG0495|consen  633 ELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAY  708 (913)
T ss_pred             cHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999877  56777777776666677899999999999998764  445678888899999999999999988


Q ss_pred             Hhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCC
Q 006076          451 EDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVP  528 (662)
Q Consensus       451 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~  528 (662)
                      ..- ..-| ....|-.|...--+.|++-.|..++++..-.+|.+...|...+.+=.+.|+.+.|..+..+..+.-  +..
T Consensus       709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~s  786 (913)
T KOG0495|consen  709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSS  786 (913)
T ss_pred             HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Ccc
Confidence            765 3344 567898888888888999999999999999999999999999999999999999998887766532  344


Q ss_pred             ceeEE
Q 006076          529 GRSRI  533 (662)
Q Consensus       529 ~~s~~  533 (662)
                      |.-|.
T Consensus       787 g~LWa  791 (913)
T KOG0495|consen  787 GLLWA  791 (913)
T ss_pred             chhHH
Confidence            55664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.3e-11  Score=125.98  Aligned_cols=276  Identities=12%  Similarity=0.011  Sum_probs=215.0

Q ss_pred             CHHHHHHHHHcCCCC--CH-hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006076          237 CVMYAGFVFSQMAVK--NV-VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH  313 (662)
Q Consensus       237 ~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~  313 (662)
                      +..+|...|...++.  |+ .....+..+|...+++++|.++|+.......-..-+..+|.++|-.+-+.    .+...+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            467899999886642  33 34456788999999999999999988422222333677888888665331    222222


Q ss_pred             HH-HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006076          314 GY-ILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR---DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP  389 (662)
Q Consensus       314 ~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  389 (662)
                      .+ +++. -+..+.+|.++.++|.-+++.+.|.+.|++..+-   ...+|+.+..-+.....+|.|...|+..+.  +.|
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence            22 2222 2456889999999999999999999999988753   557888888888999999999999998865  445


Q ss_pred             CH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 006076          390 SP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSL  465 (662)
Q Consensus       390 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l  465 (662)
                      .. ..|-.+...|.+.++++.|.-.|+.+.+   +.| +......+...+-+.|+.++|++++++. .+.| |+..---.
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            44 4666778899999999999999999875   445 6677788889999999999999999988 3343 44444445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...+...++.++|+..++++.++-|++...|..++.+|-+.|+.+.|..-|.-+.+.
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            566677899999999999999999999999999999999999999999888776653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=5.8e-09  Score=102.32  Aligned_cols=478  Identities=13%  Similarity=0.080  Sum_probs=339.3

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh----cCCCCCHhhHHHHHHHHhcCCChHHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS----IEPNPTQHTYELLLLSCTHHNSLSDALNV  102 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  102 (662)
                      .+..|+.+| +....-|....  -.|---+..=.++.....|..+++    ..++.|..=| .-+-.--..|++..|+++
T Consensus        88 e~~RARSv~-ERALdvd~r~i--tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   88 EIQRARSVF-ERALDVDYRNI--TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHH-HHHHhcccccc--hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence            567799999 77776554332  236667888889999999999998    2233343322 222233456899999999


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcC--CCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCC
Q 006076          103 HSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKT--RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIR  180 (662)
Q Consensus       103 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~  180 (662)
                      |+.-.+  .+|+...|++.|++=.+...++.|+.++++.  ..|++.+|--...-=.+.|+...|..+|....+.    -
T Consensus       164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~----~  237 (677)
T KOG1915|consen  164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF----L  237 (677)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----h
Confidence            998876  5899999999999999999999999999875  4688899988888888899999999999987764    2


Q ss_pred             CChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHH--------HcCCC
Q 006076          181 SDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI--VHIMTTLIDMYARFGCVMYAGFVF--------SQMAV  250 (662)
Q Consensus       181 p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f--------~~~~~  250 (662)
                      .|...-..++.+++.-......++.|.-++...+..= +.+  ...|..+...=-+.|+........        +.+..
T Consensus       238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence            2333344455555543333333777888888777652 333  456666666656667655444332        22222


Q ss_pred             C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHHH
Q 006076          251 K---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-------VTMVSVLQAC---AALAALEQGKMIHGYIL  317 (662)
Q Consensus       251 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-------~t~~~ll~a~---~~~~~~~~a~~~~~~~~  317 (662)
                      .   |-.+|-..+..--..|+.+...++|++.   -.+++|-.       ..|.-+=-+|   ....+.+.++++++..+
T Consensus       317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErA---Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l  393 (677)
T KOG1915|consen  317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERA---IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL  393 (677)
T ss_pred             hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH---HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            2   5567777888778889999999999987   24566632       2233322232   35678999999999998


Q ss_pred             HhCCCCchhHHHHHHHHHH----hcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C
Q 006076          318 RRGLDSILPVVSALVTMYA----RCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-S  390 (662)
Q Consensus       318 ~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~  390 (662)
                      +. ++...+++..+=-+|+    ++.++..|.+++....  -|-..++..-|..-.+.++++....+|.+.++-  .| |
T Consensus       394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~  470 (677)
T KOG1915|consen  394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPEN  470 (677)
T ss_pred             hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHh
Confidence            83 5556777777666665    5789999999998775  377788888888888999999999999999984  45 5


Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 006076          391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC  469 (662)
Q Consensus       391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~  469 (662)
                      ..+|.....--...|+.+.|+.+|+.......+..-...|.+.|+.=...|.++.|..+++++ ...+...+|-++..--
T Consensus       471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe  550 (677)
T KOG1915|consen  471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFE  550 (677)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHh
Confidence            578887777778899999999999998865433334567888888888999999999999988 3345566787766433


Q ss_pred             H-----hcC-----------CHHHHHHHHHHHHh----cCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          470 R-----IHC-----------NVELAERASKRLFE----LEPTN--AGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       470 ~-----~~g-----------~~~~a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .     ..+           +...|..+|+++..    .+|..  .......-++=...|...+...+-++|++
T Consensus       551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk  624 (677)
T KOG1915|consen  551 ASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK  624 (677)
T ss_pred             ccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence            2     223           56778888888764    23321  12233344444566777777777777754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.45  E-value=1.2e-10  Score=120.94  Aligned_cols=274  Identities=14%  Similarity=0.075  Sum_probs=189.1

Q ss_pred             cCCHHHHHHHHHcCCCC--C-HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH--HHHHHHHccCCHHHH
Q 006076          235 FGCVMYAGFVFSQMAVK--N-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV--SVLQACAALAALEQG  309 (662)
Q Consensus       235 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~--~ll~a~~~~~~~~~a  309 (662)
                      .|+++.|++.....++.  + ...|-.......+.|+++.|.+.|.++  ..  ..|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A--~~--~~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERA--AE--LADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH--Hh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence            58888888888776543  1 233333334447788888888888877  33  345543333  224556778888888


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh-----------hHHHHHHHHHHhcCChHHHHHH
Q 006076          310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV-----------VSWNSLISSYGVHGYGGKAIQI  378 (662)
Q Consensus       310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~  378 (662)
                      ...++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+...           .+|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            88888887775 44577788888888888888888888887764211           1333334433444455555566


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC
Q 006076          379 FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP  457 (662)
Q Consensus       379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p  457 (662)
                      ++.+-+. .+.+......+..++...|+.++|.++++...+.   +|+....  ++.+....++.+++++..++. +..|
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P  325 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG  325 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence            6655332 3446667778888888889999999888888652   4555322  233333558888888888877 3345


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          458 -GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       458 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                       |+....++...|...+++++|...|+++.+.+|++ ..|..|+.++.+.|+.++|.+++++-.
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             45567788888889999999999999999988874 567788899999999999988887653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.45  E-value=5.8e-10  Score=117.74  Aligned_cols=327  Identities=13%  Similarity=0.082  Sum_probs=249.3

Q ss_pred             CCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCHhHHHHHHHHHHHcCChhHHH
Q 006076          197 SCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQ---MAVKNVVSWSAMIACYARNGMAFEAL  273 (662)
Q Consensus       197 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~  273 (662)
                      |+    +++|..++.++++.. +.....|.+|...|-..|+.+++...+-.   +...|..-|-.+..-..+.|.+++|.
T Consensus       153 g~----~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  153 GD----LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             CC----HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            77    999999999999986 66788999999999999999999887644   34557889999999999999999999


Q ss_pred             HHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCChHHHHHHHh
Q 006076          274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA----LVTMYARCGKLELGQCVFD  349 (662)
Q Consensus       274 ~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~~~  349 (662)
                      -.|.+.  .+.. +++...+.--...|-+.|+...|..-+.++.....+.|..-.-.    .+..|...++-+.|.+.++
T Consensus       228 ~cy~rA--I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  228 YCYSRA--IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             HHHHHH--HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999988  3332 34555555566778899999999999999988765444443333    3455666777788888888


Q ss_pred             hCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH----------------------H----HHH
Q 006076          350 HMDK-----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF----------------------V----SVL  398 (662)
Q Consensus       350 ~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~----~ll  398 (662)
                      ....     -+...++.++..|.....++.|......+......+|..-+                      .    -+.
T Consensus       305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~  384 (895)
T KOG2076|consen  305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM  384 (895)
T ss_pred             HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence            7653     24457888899999999999999998888773222222111                      1    112


Q ss_pred             HHHhcCCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcC
Q 006076          399 GACSHAGLVEEGKMLFESMRKEHMI--RPSVEHYACMVDLLGRANKLEEAAKIIEDLRI---EPGPKVWGSLLGSCRIHC  473 (662)
Q Consensus       399 ~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~ll~~~~~~g  473 (662)
                      -++.+....+....+..... ...+  .-++..|.-+.++|...|++.+|+.+|..+..   -.+...|--+...|...|
T Consensus       385 icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~  463 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG  463 (895)
T ss_pred             hhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence            22333343333333344443 3333  33678899999999999999999999998831   235778999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeE
Q 006076          474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSR  532 (662)
Q Consensus       474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~  532 (662)
                      ..++|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|..-+-...+++.|
T Consensus       464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~  522 (895)
T KOG2076|consen  464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW  522 (895)
T ss_pred             hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence            99999999999999999999999999999999999999999999887444334456666

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.43  E-value=2.9e-10  Score=118.17  Aligned_cols=286  Identities=11%  Similarity=0.009  Sum_probs=178.3

Q ss_pred             cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcC
Q 006076          159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM--TTLIDMYARFG  236 (662)
Q Consensus       159 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g  236 (662)
                      .|++++|.+.+....+.  .-.| ...|.....+....++    .+.+.+.+..+.+.  .|+....  ......+...|
T Consensus        97 eGd~~~A~k~l~~~~~~--~~~p-~l~~llaA~aA~~~g~----~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g  167 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH--AEQP-VVNYLLAAEAAQQRGD----EARANQHLERAAEL--ADNDQLPVEITRVRIQLARN  167 (398)
T ss_pred             CCCHHHHHHHHHHHHhc--ccch-HHHHHHHHHHHHHCCC----HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCC
Confidence            46777776666554332  1111 1122222233344555    66666666666543  3333222  23355666677


Q ss_pred             CHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006076          237 CVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIH  313 (662)
Q Consensus       237 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~  313 (662)
                      +++.|...++++.+   .++.....+...|.+.|++++|++++..+  ...+..+ ......+-                
T Consensus       168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l--~k~~~~~-~~~~~~l~----------------  228 (398)
T PRK10747        168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM--AKAHVGD-EEHRAMLE----------------  228 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHcCCCC-HHHHHHHH----------------
Confidence            77777777766643   24556666677777777777777777777  4433221 11111000                


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006076          314 GYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS  390 (662)
Q Consensus       314 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  390 (662)
                                 ..+|..++....+..+.+...++++.+++   .++.....+...+...|+.++|.+++++..+.  .||
T Consensus       229 -----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~  295 (398)
T PRK10747        229 -----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYD  295 (398)
T ss_pred             -----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence                       01222233333334455666666666653   46677788888888888888888888888773  444


Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 006076          391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC  469 (662)
Q Consensus       391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~  469 (662)
                      ...  .++.+....++.+++.+..+...+.+  +-|+..+.++...+.+.|++++|.+.|+.. ...|+...+..+...+
T Consensus       296 ~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~  371 (398)
T PRK10747        296 ERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL  371 (398)
T ss_pred             HHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            421  23334445688888888888887653  456777888888889999999999888887 5678888888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcC
Q 006076          470 RIHCNVELAERASKRLFELE  489 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~  489 (662)
                      ...|+.++|...+++.+.+-
T Consensus       372 ~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        372 DRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHcCCHHHHHHHHHHHHhhh
Confidence            88999999998888887643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=3.1e-11  Score=123.32  Aligned_cols=266  Identities=18%  Similarity=0.153  Sum_probs=205.7

Q ss_pred             CChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHH-
Q 006076          267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLEL-  343 (662)
Q Consensus       267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-  343 (662)
                      -+..+|+..|...  ... +.-.......+..+|-.++++++++.+|+.+.+..  ...+..+|.+.+--+-+.-.+.- 
T Consensus       333 y~~~~A~~~~~kl--p~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L  409 (638)
T KOG1126|consen  333 YNCREALNLFEKL--PSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL  409 (638)
T ss_pred             HHHHHHHHHHHhh--HHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence            3567888888876  222 22234667778889999999999999999998763  12357788877765543322222 


Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC
Q 006076          344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHM  422 (662)
Q Consensus       344 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  422 (662)
                      |..+.+ +..-.+.+|-++..+|.-+++.+.|++.|++..+  +.| ...+|+.+..-+.....+|.|...|+...    
T Consensus       410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----  482 (638)
T KOG1126|consen  410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----  482 (638)
T ss_pred             HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence            222222 3345678999999999999999999999999988  677 56888888888888889999999998775    


Q ss_pred             CCCChHHHHH---HHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076          423 IRPSVEHYAC---MVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV  497 (662)
Q Consensus       423 ~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  497 (662)
                       ..|+.+|++   |.-.|.|.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++.-++|.|+-.-.
T Consensus       483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence             456666665   566799999999999999988 5666 5667777888889999999999999999999999999989


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHC
Q 006076          498 LLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEK  569 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~  569 (662)
                      ..+.++...+++++|.+.++++++-                          -|+-.-++..+..+.++|...
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999862                          144455566666777776543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=2e-10  Score=111.47  Aligned_cols=413  Identities=12%  Similarity=0.062  Sum_probs=244.0

Q ss_pred             HHHHHHhCCCchHHHHHHh----cCCCCCHh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh
Q 006076           55 LIQSLCKQGNLRQALDVLS----IEPNPTQH----TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS  126 (662)
Q Consensus        55 li~~~~~~g~~~~A~~~~~----~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  126 (662)
                      +-..+.+...+.+|+.+|+    .-+..+..    ..+.+-..+.+.|.++.|..-|++..+.  .|+..+.-.|+-++.
T Consensus       243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f  320 (840)
T KOG2003|consen  243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF  320 (840)
T ss_pred             ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence            4456677777777777776    11112222    2333334456777777777777777664  466666555666666


Q ss_pred             cCCChHHHHHHHhcCCC----------------CCcchHHH-----HHHHHHhcC--CccHHHHHHHHHhhCCCCCCCCh
Q 006076          127 HFDSVDDARHVFDKTRR----------------RTIYVWNA-----LFRALTLAG--RGEEVLELYRRMNGTGTGIRSDR  183 (662)
Q Consensus       127 ~~g~~~~A~~~f~~~~~----------------~~~~~~~~-----li~~~~~~g--~~~~A~~l~~~m~~~~~g~~p~~  183 (662)
                      --|+-++..+.|.+|..                |+....|.     .+.-.-+.+  +.++++-.-.++...  -+.||-
T Consensus       321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiap--vi~~~f  398 (840)
T KOG2003|consen  321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAP--VIAPDF  398 (840)
T ss_pred             ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcc--ccccch
Confidence            66777777777765531                11111221     112121111  112222222222221  233331


Q ss_pred             hh-------------HH--------HHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHH
Q 006076          184 FT-------------YT--------YVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR--FGCVMY  240 (662)
Q Consensus       184 ~t-------------~~--------~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~  240 (662)
                      ..             +.        .-...+.+.++    ++.|.+++..+.+..-..-....|.|-..+.-  -.++.+
T Consensus       399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d----~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~  474 (840)
T KOG2003|consen  399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD----IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFAD  474 (840)
T ss_pred             hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC----HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhH
Confidence            10             00        00113456777    88888888777765433333444444444333  235667


Q ss_pred             HHHHHHcCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006076          241 AGFVFSQMAVK---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL  317 (662)
Q Consensus       241 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~  317 (662)
                      |...-+....-   +....+.-...-..+|++++|.+.|++.  ....-.-....|+. --.+-.+|++++|...|-.+.
T Consensus       475 aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea--l~ndasc~ealfni-glt~e~~~~ldeald~f~klh  551 (840)
T KOG2003|consen  475 AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA--LNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLH  551 (840)
T ss_pred             HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH--HcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHH
Confidence            77666655432   2222222222334578888888888877  32221111222222 223556788888887776553


Q ss_pred             HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 006076          318 RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF  394 (662)
Q Consensus       318 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  394 (662)
                      .. +..+..+...+.+.|-...+...|.+++.+...   .|+....-|...|-+.|+-.+|.+.+-+--.- ++.|..|.
T Consensus       552 ~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~i  629 (840)
T KOG2003|consen  552 AI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETI  629 (840)
T ss_pred             HH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHH
Confidence            32 223566777777888888888888888877653   46777888888888888888888876654442 56677788


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH-hhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHh
Q 006076          395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL-GRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRI  471 (662)
Q Consensus       395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~  471 (662)
                      ..|...|....-+++++.+|+...   -+.|+..-|..||..| .|.|++++|.++++..  +++.|.....-|+..|..
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d  706 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD  706 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence            888888888888888999988774   2688888888887554 5778999999998887  455677777778887777


Q ss_pred             cCCHHHHHHHHHH
Q 006076          472 HCNVELAERASKR  484 (662)
Q Consensus       472 ~g~~~~a~~~~~~  484 (662)
                      .|- .++.+..++
T Consensus       707 lgl-~d~key~~k  718 (840)
T KOG2003|consen  707 LGL-KDAKEYADK  718 (840)
T ss_pred             ccc-hhHHHHHHH
Confidence            664 334444333

>TIGR00540 hemY_coli hemY protein

Probab=99.41  E-value=9.9e-10  Score=114.81  Aligned_cols=274  Identities=10%  Similarity=-0.045  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHcCCC--CC--HhHHHHHHHHHHHcCChhHHHHHHH
Q 006076          203 LKHGKEIHASVLRHGYNGI-VHIMTTLIDMYARFGCVMYAGFVFSQMAV--KN--VVSWSAMIACYARNGMAFEALELFR  277 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~  277 (662)
                      ++.|++......+..  |+ ...+-.....+.+.|+.+.|.+.|.+..+  |+  ....-+....+.+.|+++.|++.++
T Consensus       100 ~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~  177 (409)
T TIGR00540       100 YAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD  177 (409)
T ss_pred             HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666666666555442  22 22223334555666777777766666421  22  2222233555666677777777766


Q ss_pred             HHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHH-------HHHHHHhcCChHHHHHHHhh
Q 006076          278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA-------LVTMYARCGKLELGQCVFDH  350 (662)
Q Consensus       278 ~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-------li~~y~~~g~~~~A~~~~~~  350 (662)
                      .+  .... +-+...+..+...+...|+++.+.+.+..+.+.+..+.......       +++.-......+...+.++.
T Consensus       178 ~l--~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~  254 (409)
T TIGR00540       178 KL--LEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN  254 (409)
T ss_pred             HH--HHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            66  3332 12344555566666666777777666666666654322221111       11111111222333344444


Q ss_pred             CCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHhcCCCHHHHHHHHHHhHHhcCCC
Q 006076          351 MDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF---VSVLGACSHAGLVEEGKMLFESMRKEHMIR  424 (662)
Q Consensus       351 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  424 (662)
                      .++   .+...+..+...+...|+.++|.+++++..+.  .||....   ..........++.+.+.+.++...+..  +
T Consensus       255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p  330 (409)
T TIGR00540       255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--D  330 (409)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--C
Confidence            432   25556666666666666666666666666653  2333210   111111122344555555555444332  1


Q ss_pred             CCh--HHHHHHHHHHhhcCCHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076          425 PSV--EHYACMVDLLGRANKLEEAAKIIED--L-RIEPGPKVWGSLLGSCRIHCNVELAERASKRL  485 (662)
Q Consensus       425 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  485 (662)
                      -|+  ....++...+.+.|++++|.+.|+.  . ...|+...+..+...+...|+.++|.+++++.
T Consensus       331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            122  3344455555555555555555552  1 23445544445555555555555555555544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=7.1e-09  Score=101.65  Aligned_cols=255  Identities=14%  Similarity=0.095  Sum_probs=191.5

Q ss_pred             HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHh
Q 006076          260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL--DSILPVVSALVTMYAR  337 (662)
Q Consensus       260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~  337 (662)
                      ..++-...+.++++.-....  ...|+.-+...-+....+.-...++++|+.+|+.+.+...  -.|..+|+.++-.--.
T Consensus       234 ~~a~~el~q~~e~~~k~e~l--~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERL--SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence            34455555667777766666  5566544444444444445567788888888888887732  1246666666533322


Q ss_pred             cCChHH-HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHH
Q 006076          338 CGKLEL-GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFE  415 (662)
Q Consensus       338 ~g~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~  415 (662)
                      +.++.- |..++ .+.+--+.|...+.+-|+-.++.++|...|++.++  +.|.. ..|+.+..-|....+...|.+-++
T Consensus       312 ~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  312 KSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             hHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            222222 22222 23333445666677788888999999999999988  45554 567778888999999999999999


Q ss_pred             HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       416 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      ..++..  +.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|+..|++++..+-.+.
T Consensus       389 rAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  389 RAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             HHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence            998632  448889999999999999999999999988 4566 789999999999999999999999999999887777


Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          494 GNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .+|..|+++|-+.++.++|.+.+++-.+
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            8999999999999999999999988765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=8e-09  Score=101.29  Aligned_cols=238  Identities=14%  Similarity=0.150  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC------CHhHHHHHHHHHHHcCChhHHHHHH
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK------NVVSWSAMIACYARNGMAFEALELF  276 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~  276 (662)
                      .+++.+=.......|++.+...-+-...++-...++|+|+.+|+++...      |..+|+.++  |+++.+.  .+.++
T Consensus       243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s--kLs~L  318 (559)
T KOG1155|consen  243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS--KLSYL  318 (559)
T ss_pred             HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH--HHHHH
Confidence            4444444444444555444444443334444445555555555555432      333444433  2222211  11111


Q ss_pred             HHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---
Q 006076          277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---  353 (662)
Q Consensus       277 ~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---  353 (662)
                      .+-...-...+|  .|...+.+-|+-.++.++|...|+++++.+ +....+|+.+.+-|....+...|.+-++...+   
T Consensus       319 A~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p  395 (559)
T KOG1155|consen  319 AQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP  395 (559)
T ss_pred             HHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence            111001112222  233333444444444555555555554443 12334444444444444444444444443332   


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076          354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC  432 (662)
Q Consensus       354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  432 (662)
                      .|-..|-.|.++|...+...=|+-.|++...  ++| |...|.+|...|.+.++.++|++.|.....-.  ..+...+..
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dte~~~l~~  471 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DTEGSALVR  471 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--ccchHHHHH
Confidence            3444444444455444444444444444444  233 23444444444444455555554444443211  122344444


Q ss_pred             HHHHHhhcCCHHHHHHHHH
Q 006076          433 MVDLLGRANKLEEAAKIIE  451 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~  451 (662)
                      |.++|-+.++.++|...|+
T Consensus       472 LakLye~l~d~~eAa~~ye  490 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYYE  490 (559)
T ss_pred             HHHHHHHHHhHHHHHHHHH
Confidence            4444444444444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=4.9e-09  Score=103.33  Aligned_cols=213  Identities=16%  Similarity=0.139  Sum_probs=171.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 006076          302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQI  378 (662)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~  378 (662)
                      -.|+.-.+..-++.+++....++ ..|--+..+|....+-++..+.|+...+   .|..+|..-...+.-.+++++|..=
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence            35777788888888887754332 3366667788999999999999987763   4666777777777788899999999


Q ss_pred             HHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC
Q 006076          379 FKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE  456 (662)
Q Consensus       379 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~  456 (662)
                      |++.+.  +.|+. ..|..+--+..+.+.++++...|+...++  ++..+++|+.....+.-.++++.|.+.|+.. .++
T Consensus       417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            999988  56654 67777777778899999999999999875  5778999999999999999999999999876 444


Q ss_pred             CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          457 PG---------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       457 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      |+         +.+-.+++-.-- .+++..|..+++++++++|....+|..|+.+-.+.|++++|+++|++-.
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44         222222332222 3899999999999999999999999999999999999999999999754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.35  E-value=6.4e-12  Score=124.61  Aligned_cols=253  Identities=16%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             HHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHH-HHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076          154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLK-ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY  232 (662)
Q Consensus       154 ~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~-~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  232 (662)
                      ..+.+.|++++|++++++-...  ..+|+...|-.++. .+...++    .+.|.+.++.+++.+ +.+...+..++.. 
T Consensus        16 ~~~~~~~~~~~Al~~L~~~~~~--~~~~~~~~~~~~~a~La~~~~~----~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-   87 (280)
T PF13429_consen   16 RLLYQRGDYEKALEVLKKAAQK--IAPPDDPEYWRLLADLAWSLGD----YDEAIEAYEKLLASD-KANPQDYERLIQL-   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccc--cccccccccccccccccccccc----ccccccccccccccc-ccccccccccccc-
Confidence            3444555555555555433322  11233333332222 1222333    555555555555443 2234444455555 


Q ss_pred             HhcCCHHHHHHHHHcCC--CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH
Q 006076          233 ARFGCVMYAGFVFSQMA--VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK  310 (662)
Q Consensus       233 ~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~  310 (662)
                      ...+++++|.+++...-  .++...+..++..+.+.++++++.+++.... .....+++...|......+.+.|+.++|.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  166 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLE-ELPAAPDSARFWLALAEIYEQLGDPDKAL  166 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHH-H-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            45566666666665542  2345556666666677777777777776652 12223344455555555556666666666


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006076          311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV  387 (662)
Q Consensus       311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  387 (662)
                      ..++.+++.. +.|..+.+.++..+...|+.+++.++++...   ..|...|..+..+|...|+.++|+..|++..... 
T Consensus       167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-  244 (280)
T PF13429_consen  167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-  244 (280)
T ss_dssp             HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence            6666666653 2235555556666666666665555544433   2344555556666666666666666666655531 


Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076          388 SPSPISFVSVLGACSHAGLVEEGKMLFESM  417 (662)
Q Consensus       388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~  417 (662)
                      +.|..+...+..++...|+.++|.++....
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             TT-HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            224445555555556666666665555444

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.33  E-value=3.1e-09  Score=111.68  Aligned_cols=105  Identities=20%  Similarity=0.161  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcchHHHH
Q 006076          428 EHYACMVDLLGRANKLEEAAKIIEDLR-----IEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL---EPTNAGNYVLL  499 (662)
Q Consensus       428 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l  499 (662)
                      ..|..||+.+....++++|..+.++..     +.-|..-+..+.....+++....+..+++++.+.   .|.......-+
T Consensus       492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~  571 (1088)
T KOG4318|consen  492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL  571 (1088)
T ss_pred             hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence            568899999999999999999999884     2335556778888889999999998888887652   34334555667


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEE
Q 006076          500 ADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI  533 (662)
Q Consensus       500 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~  533 (662)
                      .+.-...|+.+...++++-+...|+.. .+--|.
T Consensus       572 lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~  604 (1088)
T KOG4318|consen  572 LNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM  604 (1088)
T ss_pred             HhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence            777788999999999999999888865 344443

>TIGR00540 hemY_coli hemY protein

Probab=99.33  E-value=1.7e-09  Score=113.14  Aligned_cols=282  Identities=11%  Similarity=-0.017  Sum_probs=197.8

Q ss_pred             hcCCccHHHHHHHHHhhCCCCCCCChhh-HHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076          158 LAGRGEEVLELYRRMNGTGTGIRSDRFT-YTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG  236 (662)
Q Consensus       158 ~~g~~~~A~~l~~~m~~~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  236 (662)
                      ..|+++.|.+.+.+..+.    .|+... +-..-.+....++    .+.+.+.+..+.+..-.+...+.-.....+...|
T Consensus        96 ~~g~~~~A~~~l~~~~~~----~~~~~~~~llaA~aa~~~g~----~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~  167 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH----AAEPVLNLIKAAEAAQQRGD----EARANQHLEEAAELAGNDNILVEIARTRILLAQN  167 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence            468899999888876654    454333 3333455566677    8999999988876542222334555678888899


Q ss_pred             CHHHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH-HHHHHH---HccCCHHHH
Q 006076          237 CVMYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV-SVLQAC---AALAALEQG  309 (662)
Q Consensus       237 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~-~ll~a~---~~~~~~~~a  309 (662)
                      +++.|...++.+.+  | +...+..+...|.+.|++++|.+++...  .+.++. +...+. .-..+.   ...+..+.+
T Consensus       168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l--~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM--AKAGLF-DDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999988863  3 6677888999999999999999999998  655543 222221 111111   222222333


Q ss_pred             HHHHHHHHHhCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhH---HHHHHHHHHhcCChHHHHHHHHH
Q 006076          310 KMIHGYILRRGL---DSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVS---WNSLISSYGVHGYGGKAIQIFKE  381 (662)
Q Consensus       310 ~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~  381 (662)
                      .+.+..+.+...   +.++..+..+...+...|+.++|.+++++..+  ||...   +..........++.+.+++.+++
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence            334444444322   24788999999999999999999999998864  44432   12222333445788899999988


Q ss_pred             HHHcCCCCCHh---HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          382 MIYHGVSPSPI---SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       382 m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      ..+.  .|+..   ...++...|.+.|++++|.++|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus       325 ~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       325 QAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8773  56554   45577888999999999999999532 1235799999999999999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=5.5e-09  Score=105.00  Aligned_cols=263  Identities=12%  Similarity=0.013  Sum_probs=200.7

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076          252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL  331 (662)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  331 (662)
                      ++.....-..-+...+++.+.++++.... ...  +++...+..-|..+...|+...-.-+-..+++. .+....+|-++
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll-e~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV  318 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELL-EKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV  318 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHH-hhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence            44445555566777788888888888773 222  344444555555666777666655555555554 35567788888


Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHH
Q 006076          332 VTMYARCGKLELGQCVFDHMDKRD---VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE  408 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  408 (662)
                      .--|.-.|+..+|++.|.+...-|   ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence            888888899999999998765432   458999999999999999999999887663 2223333444555788899999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC-----C---CC-CHHHHHHHHHHHHhcCCHHHHH
Q 006076          409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-----I---EP-GPKVWGSLLGSCRIHCNVELAE  479 (662)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~  479 (662)
                      .|.++|.......  +.|+...+-+.-.....+.+.+|..+|+..-     +   .+ -..+|+.|..+|++.+..++|+
T Consensus       398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            9999999886432  4477788888888888899999999998651     1   11 3456888999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          480 RASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ..+++.+.+.|.++.+|..++-+|...|+++.|...|.+...
T Consensus       476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987663

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.31  E-value=6.6e-10  Score=106.89  Aligned_cols=197  Identities=16%  Similarity=0.097  Sum_probs=163.4

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA  400 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  400 (662)
                      ....+..+...|.+.|++++|.+.|++..+   .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            356677788889999999999999987653   346688888899999999999999999988853 3345677778888


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELA  478 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a  478 (662)
                      +...|++++|.+.++...+....+.....+..+...+...|++++|...+++. ...| +...|..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            89999999999999998753322334567788889999999999999999887 3334 466788888999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ...+++..+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999998888888888999999999999999999887764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.29  E-value=8.2e-12  Score=87.04  Aligned_cols=50  Identities=32%  Similarity=0.561  Sum_probs=47.8

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076          354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH  403 (662)
Q Consensus       354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  403 (662)
                      ||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1.9e-08  Score=94.40  Aligned_cols=285  Identities=11%  Similarity=0.077  Sum_probs=163.7

Q ss_pred             cCCccHHHHHHHHHhhCCCCCCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHh
Q 006076          159 AGRGEEVLELYRRMNGTGTGIRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGI--VHIMTTLIDMYAR  234 (662)
Q Consensus       159 ~g~~~~A~~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~  234 (662)
                      +.++++|.++|-+|.+.    .|. ..+-.++-+.+.+.|.    .+.|..+|+.+.++. ++.+  ..+.-.|..-|.+
T Consensus        48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGE----vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~  119 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGE----VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA  119 (389)
T ss_pred             hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcch----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            47888888888888865    222 2233344455556666    888888888877653 1111  2344556677888


Q ss_pred             cCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076          235 FGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM  311 (662)
Q Consensus       235 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~  311 (662)
                      .|-+|.|+.+|..+.+.+   ....-.|+..|-+..+|++|++.-++.  ...+-++..+-.                  
T Consensus       120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L--~k~~~q~~~~eI------------------  179 (389)
T COG2956         120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL--VKLGGQTYRVEI------------------  179 (389)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHcCCccchhHH------------------
Confidence            888888888888876633   334556777888888888888887776  444433322211                  


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076          312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS  388 (662)
Q Consensus       312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  388 (662)
                                   ...|.-|...+....+++.|..++.+..+   ..+..=-.+...+...|++..|++.++...+++..
T Consensus       180 -------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         180 -------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             -------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence                         11222233333334445555555554432   12222223444566667777777777766665433


Q ss_pred             CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhcCCCCCHHHHHHHHH
Q 006076          389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLRIEPGPKVWGSLLG  467 (662)
Q Consensus       389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~  467 (662)
                      --..+...|..+|.+.|+.+++...+..+.+.   .+....-..+.+.-....-.+.|...+ +.+.-+|+...+..|+.
T Consensus       247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~  323 (389)
T COG2956         247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD  323 (389)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence            33345566666777777777777777666543   344444445555444444455555444 33455677777777776


Q ss_pred             HHHhc---CCHHHHHHHHHHHHh
Q 006076          468 SCRIH---CNVELAERASKRLFE  487 (662)
Q Consensus       468 ~~~~~---g~~~~a~~~~~~~~~  487 (662)
                      .-...   |...+-...++.+.+
T Consensus       324 ~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         324 YHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             hhhccccccchhhhHHHHHHHHH
Confidence            54332   334444455555543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=5.8e-08  Score=95.94  Aligned_cols=404  Identities=9%  Similarity=0.008  Sum_probs=253.4

Q ss_pred             HHHHHHHhCCCchHHHHHHh--cCCCCC-HhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHhhcCC
Q 006076           54 ELIQSLCKQGNLRQALDVLS--IEPNPT-QHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQD-PFLVTKLINVYSHFD  129 (662)
Q Consensus        54 ~li~~~~~~g~~~~A~~~~~--~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g  129 (662)
                      +.-.-|.++|++++|+..|.  -...|| +.-|.....+|...|+++.+.+--...++.  .|+ +..+..-..++-..|
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence            34456778999999999998  556777 666777778888889999888877777664  333 234555556677778


Q ss_pred             ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcc--------HHHHHHHH-HhhCCCCCCCChhhHHHHHHHHHhCCCCc
Q 006076          130 SVDDARHVFDKTRRRTIYVWNALFRALTLAGRGE--------EVLELYRR-MNGTGTGIRSDRFTYTYVLKACVASSCGF  200 (662)
Q Consensus       130 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~l~~~-m~~~~~g~~p~~~t~~~ll~~~~~~~~~~  200 (662)
                      ++++|+.=.         |-..+..++..+.-.-        .|..-..+ |.+.++.+-|......+.+..+-....  
T Consensus       198 ~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~--  266 (606)
T KOG0547|consen  198 KFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK--  266 (606)
T ss_pred             cHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc--
Confidence            777775311         2222222222221111        12222222 222222455665555555444322110  


Q ss_pred             cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHc-------CCCCC---------HhHHHHHHHHH
Q 006076          201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF-GCVMYAGFVFSQ-------MAVKN---------VVSWSAMIACY  263 (662)
Q Consensus       201 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~-------~~~~~---------~~~~~~li~~~  263 (662)
                                ..+...+-..|...-..+=..|.+. ..+..|...+.+       ....+         ..+.+.-..-+
T Consensus       267 ----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~  336 (606)
T KOG0547|consen  267 ----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH  336 (606)
T ss_pred             ----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence                      0000000011222222222222211 123333333221       11111         22222223335


Q ss_pred             HHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 006076          264 ARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLEL  343 (662)
Q Consensus       264 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  343 (662)
                      .-.|+.-.|...|+..  ....-.++. .|.-+..+|....+.++..+.|..+.+.+. .++.+|..=..++.-.+++++
T Consensus       337 fL~g~~~~a~~d~~~~--I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAA--IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhcCCchhhhhhHHHH--HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence            5678889999999887  333322222 266677778999999999999999988763 356677777788888899999


Q ss_pred             HHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHh
Q 006076          344 GQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE  420 (662)
Q Consensus       344 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  420 (662)
                      |..=|++...   .++..|--+..+..+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+...+ 
T Consensus       413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-  490 (606)
T KOG0547|consen  413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-  490 (606)
T ss_pred             HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence            9999998774   35667777777778889999999999999876 565667888899999999999999999998864 


Q ss_pred             cCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076          421 HMIRPS---------VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE  489 (662)
Q Consensus       421 ~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  489 (662)
                        +.|+         +.+--+++-. .-.+++..|.+++++. .+.| ....|.+|...-.+.|+.++|+++|++...+-
T Consensus       491 --LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  491 --LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             --hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              3443         1111222221 2338999999999987 5555 46779999999999999999999999987764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=2.1e-07  Score=94.25  Aligned_cols=434  Identities=12%  Similarity=0.101  Sum_probs=262.1

Q ss_pred             HHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHhh--c
Q 006076           55 LIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTK--LINVYS--H  127 (662)
Q Consensus        55 li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~  127 (662)
                      =++-+..+|++++|+..-.   ...+-|...+..-+-+..+.+.+++|..+.+   ..+.   ..+++.  +=.+|+  +
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence            3566777889999998877   4444566667777778888899998885443   2221   112222  355665  7


Q ss_pred             CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchHHH
Q 006076          128 FDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLKHG  206 (662)
Q Consensus       128 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a  206 (662)
                      .+..|+|...++...+.+..+-..-...+-+.|++++|+.+|+.+.+.  +..- |...-..++.+-+.           
T Consensus        92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~nl~a~~a~-----------  158 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRANLLAVAAA-----------  158 (652)
T ss_pred             cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHh-----------
Confidence            899999999999666666656666667788999999999999999876  2221 12222222222111           


Q ss_pred             HHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCC-----Hh-----HHHHHHHHHHHc
Q 006076          207 KEIHASVLRHGYNG--IVHIMTTLIDMYARFGCVMYAGFVFSQM--------AVKN-----VV-----SWSAMIACYARN  266 (662)
Q Consensus       207 ~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~  266 (662)
                      .+. ..+......|  +-..+-...-.+...|++.+|+++++..        .+.|     ..     .--.|...+-..
T Consensus       159 l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~  237 (652)
T KOG2376|consen  159 LQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ  237 (652)
T ss_pred             hhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence            111 0122222222  1122222344567789999999999876        1111     11     122344567788


Q ss_pred             CChhHHHHHHHHHhhhhCCCcCCHHHHHHH---HHHHHccCCHHH--HHHHHHHH-----------HHhCCCCchhHHHH
Q 006076          267 GMAFEALELFREMIMESHDLCPNSVTMVSV---LQACAALAALEQ--GKMIHGYI-----------LRRGLDSILPVVSA  330 (662)
Q Consensus       267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~l---l~a~~~~~~~~~--a~~~~~~~-----------~~~g~~~~~~~~~~  330 (662)
                      |+.++|.+++...  .... .+|......+   |.+...-.++-.  ....++..           ....-...+..-+.
T Consensus       238 Gqt~ea~~iy~~~--i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~  314 (652)
T KOG2376|consen  238 GQTAEASSIYVDI--IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA  314 (652)
T ss_pred             cchHHHHHHHHHH--HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988  4433 3444222222   222222222111  11111110           00000112233345


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCC
Q 006076          331 LVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGV-HGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAG  405 (662)
Q Consensus       331 li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g  405 (662)
                      ++.+|.  +..+.+.++-...+.  |....=+.+..++.. .....+|.+++...-+.  .|..  ......+.-....|
T Consensus       315 lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~g  390 (652)
T KOG2376|consen  315 LLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQG  390 (652)
T ss_pred             HHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcC
Confidence            666664  566778888777774  333333333333322 22467788888777664  3443  44455566677899


Q ss_pred             CHHHHHHHHH--------HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--------CCCCC-HHHHHHHHHH
Q 006076          406 LVEEGKMLFE--------SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--------RIEPG-PKVWGSLLGS  468 (662)
Q Consensus       406 ~~~~a~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~  468 (662)
                      +++.|.+++.        .+.+   +...+.+..+++.+|.+.++-+-|..++.+.        .-.+. ..+|.-+...
T Consensus       391 n~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f  467 (652)
T KOG2376|consen  391 NPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF  467 (652)
T ss_pred             CHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence            9999999998        4432   3345566778889999988877777776654        11221 2234444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL  519 (662)
Q Consensus       469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  519 (662)
                      -.++|+.++|...++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus       468 ~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  468 KLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            56789999999999999999999999999999999876 566666665443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.21  E-value=1.2e-08  Score=105.67  Aligned_cols=231  Identities=19%  Similarity=0.224  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCChHHHHHHHhhCCC---------
Q 006076          290 SVTMVSVLQACAALAALEQGKMIHGYILRR-----GL-DSIL-PVVSALVTMYARCGKLELGQCVFDHMDK---------  353 (662)
Q Consensus       290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~---------  353 (662)
                      ..|...+...|...|+++.|..+++..++.     |. .|.+ ...+.+...|...+++.+|..+|+++..         
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456666788899999999999999888765     21 2222 2334577788999999999998887752         


Q ss_pred             -CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-CCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC--
Q 006076          354 -RD-VVSWNSLISSYGVHGYGGKAIQIFKEMIY-----HGVS-PSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHM--  422 (662)
Q Consensus       354 -~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--  422 (662)
                       |. ..+++.|...|...|++++|...+++..+     .|.. |.. .-++.+...|...+.+++|..+++...+.+.  
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence             22 34788888899999999998888876654     1222 222 3456677788999999999999987765432  


Q ss_pred             CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 006076          423 IRPS----VEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE-  487 (662)
Q Consensus       423 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-  487 (662)
                      +.++    ..+++.|...|...|++++|.+++++.         +..+. ...++.|..+|.+.++.++|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            2222    468999999999999999999999876         11222 44577888999999999999999987764 


Q ss_pred             ---cCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          488 ---LEPTN---AGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       488 ---~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                         .+|+.   ..+|..|+.+|.+.|++++|.++.....
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               34444   4578889999999999999999998775

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.20  E-value=1.2e-07  Score=91.82  Aligned_cols=276  Identities=15%  Similarity=0.083  Sum_probs=150.8

Q ss_pred             cCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076          235 FGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM  311 (662)
Q Consensus       235 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~  311 (662)
                      .|++..|+++..+-.+   ..+..|..-..+--+.|+.+.|-.++.+.  .+..-.++.....+........|+.+.|+.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea--ae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA--AELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH--hccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            4666666666655332   22333444444555566666666666655  222112333344444444556666666666


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC-----------hhHHHHHHHHHHhcCChHHHHHHHH
Q 006076          312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD-----------VVSWNSLISSYGVHGYGGKAIQIFK  380 (662)
Q Consensus       312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~  380 (662)
                      -...+.+.+ +.++.+.......|.+.|++.....++..+.+..           ..+|+.++.-....+..+.-...++
T Consensus       175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            666665554 2345556666666666666666666666665421           1245555554444444444334444


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCC
Q 006076          381 EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPG  458 (662)
Q Consensus       381 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~  458 (662)
                      +.-.. .+-+...-.+++.-+...|+.++|.++.....+. +..|+   .. ..-...+-++.+.-++..++.  ..+.+
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~  327 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPED  327 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence            43322 3444445555666666677777777766666543 23333   11 111222334433333333322  11223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +..+.+|...|.+++.+.+|...++..+...|+ ...|..++++|.+.|+..+|.+++++-.
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            456667777777777777777777777777775 5677777777777777777777776654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.20  E-value=7.7e-10  Score=116.16  Aligned_cols=264  Identities=16%  Similarity=0.145  Sum_probs=195.6

Q ss_pred             HHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076          274 ELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK  353 (662)
Q Consensus       274 ~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~  353 (662)
                      .++..|  +..|+.||.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+.       +
T Consensus        11 nfla~~--e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e   80 (1088)
T KOG4318|consen   11 NFLALH--EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E   80 (1088)
T ss_pred             hHHHHH--HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence            356667  88899999999999999999999999998 9999988888888999999999999999988776       7


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076          354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM  433 (662)
Q Consensus       354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  433 (662)
                      |...+|+.|..+|.++|+... ++..++           -...+...++..|....-..++..+.-..+.-||..   ..
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~  145 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NA  145 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HH
Confidence            888999999999999999866 332222           233455567777777777777766543344455554   45


Q ss_pred             HHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076          434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH-CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV  512 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  512 (662)
                      +..+.-.|.++.++++...+|...-......++.-+... ..+++-...-+...+ .| ++.+|..+.+.-..+|+.+.|
T Consensus       146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~A  223 (1088)
T KOG4318|consen  146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGA  223 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhH
Confidence            666677889999999999987321111111134444433 334444444444445 45 478999999999999999999


Q ss_pred             HHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHHHCCcccCCcccc
Q 006076          513 KRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMKEKGYVPQTKVVL  579 (662)
Q Consensus       513 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~  579 (662)
                      ..+...|+++|+...+.+.|-.+        .|....+       -++.+.+.|++.|+.|+..+..
T Consensus       224 k~ll~emke~gfpir~HyFwpLl--------~g~~~~q-------~~e~vlrgmqe~gv~p~seT~a  275 (1088)
T KOG4318|consen  224 KNLLYEMKEKGFPIRAHYFWPLL--------LGINAAQ-------VFEFVLRGMQEKGVQPGSETQA  275 (1088)
T ss_pred             HHHHHHHHHcCCCcccccchhhh--------hcCccch-------HHHHHHHHHHHhcCCCCcchhH
Confidence            99999999999988888888743        3322222       3456889999999999987553

>PF13041 PPR_2: PPR repeat family

Probab=99.19  E-value=4.7e-11  Score=83.16  Aligned_cols=50  Identities=30%  Similarity=0.531  Sum_probs=46.2

Q ss_pred             CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076          251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA  302 (662)
Q Consensus       251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~  302 (662)
                      ||+++||++|.+|++.|++++|+++|++|  ...|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M--~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEM--KKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHcC
Confidence            68899999999999999999999999999  899999999999999998874

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.19  E-value=2e-06  Score=88.13  Aligned_cols=382  Identities=13%  Similarity=0.110  Sum_probs=201.2

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHL  106 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  106 (662)
                      .+..-++.| +.....=+++-..+-|.-.+.-..+.|-++-++.+|++-.+.++..-+--+..++..+++++|.+.+...
T Consensus       117 ~iT~tR~tf-drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~v  195 (835)
T KOG2047|consen  117 LITRTRRTF-DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATV  195 (835)
T ss_pred             hHHHHHHHH-HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence            334445555 4443333333333445557777777777877887777333333333445556666677777777666655


Q ss_pred             HHhC------CCCChhHHHHHHHHhhcCCC---hHHHHHHHhcCCCC--C--cchHHHHHHHHHhcCCccHHHHHHHHHh
Q 006076          107 TDNG------FDQDPFLVTKLINVYSHFDS---VDDARHVFDKTRRR--T--IYVWNALFRALTLAGRGEEVLELYRRMN  173 (662)
Q Consensus       107 ~~~g------~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~l~~~m~  173 (662)
                      +...      .+.+-..|+-+-+..++.-+   --....+++.+..+  |  ...|++|..-|.+.|.++.|..+|++..
T Consensus       196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai  275 (835)
T KOG2047|consen  196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI  275 (835)
T ss_pred             cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4321      12222333333333332211   11122223322222  1  1345666666666666666666655544


Q ss_pred             hCCCCCCCChhhHHHHHHHHHhCC----------------C---------------------------------------
Q 006076          174 GTGTGIRSDRFTYTYVLKACVASS----------------C---------------------------------------  198 (662)
Q Consensus       174 ~~~~g~~p~~~t~~~ll~~~~~~~----------------~---------------------------------------  198 (662)
                      ..  -  .+..-|+.+..+|+.-.                +                                       
T Consensus       276 ~~--v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e  351 (835)
T KOG2047|consen  276 QT--V--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE  351 (835)
T ss_pred             Hh--h--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence            33  1  11112222222222100                0                                       


Q ss_pred             -------CccchHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHcCCCCC-------HhHHHH
Q 006076          199 -------GFSLLKHGKEIHASVLRHGYNG------IVHIMTTLIDMYARFGCVMYAGFVFSQMAVKN-------VVSWSA  258 (662)
Q Consensus       199 -------~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~  258 (662)
                             -.+...+-...+.++++. +.|      -...|..+.+.|-..|+++.|+.+|++..+-+       ..+|..
T Consensus       352 W~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~  430 (835)
T KOG2047|consen  352 WHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA  430 (835)
T ss_pred             HHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence                   011133333444444433 111      12456677888888888999999888875421       234555


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhhCCC----------cC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 006076          259 MIACYARNGMAFEALELFREMIMESHDL----------CP-------NSVTMVSVLQACAALAALEQGKMIHGYILRRGL  321 (662)
Q Consensus       259 li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~  321 (662)
                      -...=.++.+++.|+++.++..  ...-          .|       +...|+..++.--..|-++..+.+++.+++..+
T Consensus       431 waemElrh~~~~~Al~lm~~A~--~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri  508 (835)
T KOG2047|consen  431 WAEMELRHENFEAALKLMRRAT--HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI  508 (835)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhh--cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence            5566667777888888777652  1110          11       112233333444456777788888888887765


Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CChh-HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhH
Q 006076          322 DSILPVVSALVTMYARCGKLELGQCVFDHMDK----RDVV-SWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSPIS  393 (662)
Q Consensus       322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t  393 (662)
                      .....+. ...-.+-...-++++.+++++-..    |++. .||+-+.-+.+   .-..+.|..+|++.++ |.+|...-
T Consensus       509 aTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK  586 (835)
T KOG2047|consen  509 ATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK  586 (835)
T ss_pred             CCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH
Confidence            4222222 222234455667888888886542    5543 67776665554   2357888889988888 66766544


Q ss_pred             HHHHHHHH--hcCCCHHHHHHHHHHhH
Q 006076          394 FVSVLGAC--SHAGLVEEGKMLFESMR  418 (662)
Q Consensus       394 ~~~ll~a~--~~~g~~~~a~~~~~~~~  418 (662)
                      +.-|+-|-  ..-|....|..++++..
T Consensus       587 tiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  587 TIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33333332  23477778888887764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.17  E-value=4.2e-08  Score=94.96  Aligned_cols=277  Identities=13%  Similarity=0.008  Sum_probs=211.8

Q ss_pred             cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC----CHhHHHHHHHHHHHcCChhHHHHHH
Q 006076          201 SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK----NVVSWSAMIACYARNGMAFEALELF  276 (662)
Q Consensus       201 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~  276 (662)
                      |++..|+.+.....+.+-.| ...|..-..+--+.|+.+.|-+...+..++    +....-+........|+...|..-.
T Consensus        98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            34999998888877776333 344445556677789999999988887543    4455667777888899999998888


Q ss_pred             HHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCChHHHHHHHh
Q 006076          277 REMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSIL-------PVVSALVTMYARCGKLELGQCVFD  349 (662)
Q Consensus       277 ~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~  349 (662)
                      .+.  ...+ +-+.........+|.+.|++.....+...+.+.|.-.+.       .+++.+++-....+..+.-...++
T Consensus       177 ~~l--l~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         177 DQL--LEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHH--HHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            877  4433 234566777888999999999999999999998866553       356666665555555566566777


Q ss_pred             hCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC
Q 006076          350 HMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS  426 (662)
Q Consensus       350 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~  426 (662)
                      ..+.   .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+    ...+-.+.+.++.+.-.+..+.-.+..+-  +
T Consensus       254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~  327 (400)
T COG3071         254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--D  327 (400)
T ss_pred             hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence            7763   4566677788888999999999999999888887777    23334667788888888888777766533  4


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                      +..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.++|.+..++.+-
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            578888999999999999999999876 6789999999999999999999999999888764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=6.7e-08  Score=90.74  Aligned_cols=297  Identities=12%  Similarity=0.096  Sum_probs=183.1

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC-CCH------hHHHHHHHHHHHcCChhHHHHH
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-KNV------VSWSAMIACYARNGMAFEALEL  275 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A~~~  275 (662)
                      .++|..+|-+|.+.. +.+..+--+|.+.|-+.|.+|.|+++-..+.+ ||.      ...-.|..-|...|-++.|..+
T Consensus        51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~  129 (389)
T COG2956          51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI  129 (389)
T ss_pred             cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            455555555555532 33334444555566666666666665555432 221      1222344445555555555555


Q ss_pred             HHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006076          276 FREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD  355 (662)
Q Consensus       276 ~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~  355 (662)
                      |..+                                     .+.+ +--......|+..|-+..++++|.++-+++.+-+
T Consensus       130 f~~L-------------------------------------~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~  171 (389)
T COG2956         130 FNQL-------------------------------------VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG  171 (389)
T ss_pred             HHHH-------------------------------------hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence            5554                                     3322 1112233345555666666666665555443211


Q ss_pred             h--------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC
Q 006076          356 V--------VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS  426 (662)
Q Consensus       356 ~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~  426 (662)
                      .        ..|--+...+....+.+.|..++.+..+.  .|+.+- -..+.......|+++.|.+.++.+.+. +..--
T Consensus       172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl  248 (389)
T COG2956         172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYL  248 (389)
T ss_pred             CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHH
Confidence            1        13445566666778999999999999884  454433 334556788999999999999999754 23334


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH--
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY--  503 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--  503 (662)
                      ..+...|..+|...|+.++...++.++ ...+....-..+-.--....-.+.|...+.+-+...|+- ..+..|++.-  
T Consensus       249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~  327 (389)
T COG2956         249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLA  327 (389)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhc
Confidence            667888999999999999999998877 444555555555555555566778888888888888874 4444455543  


Q ss_pred             -HhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEE
Q 006076          504 -AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSF  542 (662)
Q Consensus       504 -~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~  542 (662)
                       +..|++.+...+++.|...-++..|.+.-..-+=..|+|
T Consensus       328 daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l  367 (389)
T COG2956         328 DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL  367 (389)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence             345779999999999988777766655444333333333

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=6.5e-07  Score=86.82  Aligned_cols=304  Identities=13%  Similarity=0.002  Sum_probs=207.0

Q ss_pred             CCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHH
Q 006076          180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH-GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA  258 (662)
Q Consensus       180 ~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~  258 (662)
                      .|...+....+.+++..-..  .-..+.+.+..+... -++.|+....++.+.|...|+.++|...|++...-|+.+...
T Consensus       191 ~~~~dwls~wika~Aq~~~~--~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~  268 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNF--KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA  268 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhc--ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence            34444455555554443220  022333333333332 367788899999999999999999999999876544433322


Q ss_pred             H---HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076          259 M---IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY  335 (662)
Q Consensus       259 l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  335 (662)
                      |   .-.+.+.|+.+....+...+.  ... .-...-|..-+...-..++++.|..+-+..++.. +.+...+-.-...+
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf--~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL  344 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLF--AKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL  344 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHH--hhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence            2   223457788887777776662  111 1122222222333345667788887777777654 22344444445567


Q ss_pred             HhcCChHHHHHHHhhCC--C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhc-CCCHHHH
Q 006076          336 ARCGKLELGQCVFDHMD--K-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL-GACSH-AGLVEEG  410 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a  410 (662)
                      ...|+.++|.-.|+...  . -+..+|.-|+..|...|.+.+|..+-++.... ++.+..+.+.+. ..|.. ..--++|
T Consensus       345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA  423 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA  423 (564)
T ss_pred             HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence            77899999999998765  3 47889999999999999999999888776653 344556665552 33332 3345788


Q ss_pred             HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          411 KMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       411 ~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                      ..+++...+   +.|+ ....+.+...+...|+.+++..++++. ...||...-+.|...++..+.+.+|...|..++.+
T Consensus       424 Kkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  424 KKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            888887764   4564 556778888999999999999999886 56789999999999999999999999999999999


Q ss_pred             CCCCc
Q 006076          489 EPTNA  493 (662)
Q Consensus       489 ~p~~~  493 (662)
                      +|++.
T Consensus       501 dP~~~  505 (564)
T KOG1174|consen  501 DPKSK  505 (564)
T ss_pred             Cccch
Confidence            99874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.10  E-value=4.6e-08  Score=93.98  Aligned_cols=199  Identities=15%  Similarity=0.085  Sum_probs=100.6

Q ss_pred             HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076          253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV  332 (662)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  332 (662)
                      ...+..+...|...|++++|.+.+++.  .... +.+...+..+...+...|++++|.+.++...+.. +          
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~--l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~----------   96 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKA--LEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P----------   96 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C----------
Confidence            345666666666667777777666665  2221 1123344444444555555555555555554432 1          


Q ss_pred             HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHH
Q 006076          333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGK  411 (662)
Q Consensus       333 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~  411 (662)
                                           .+...+..+...|...|++++|.+.|++.......| ....+..+..++...|++++|.
T Consensus        97 ---------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  155 (234)
T TIGR02521        97 ---------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE  155 (234)
T ss_pred             ---------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence                                 222344444444555555555555555554421111 1233444444555556666666


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                      ..++...+..  +.+...+..+...+...|++++|...+++. .. +++...+..+...+...|+.+.|....+.+.+.
T Consensus       156 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       156 KYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            6665554321  223445555566666666666666665554 11 223444445555555666666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.07  E-value=4.7e-08  Score=106.29  Aligned_cols=260  Identities=15%  Similarity=0.051  Sum_probs=183.6

Q ss_pred             CHhHHHHHHHHHHH-----cCChhHHHHHHHHHhhhhCCCcCCH-HHHHHHHHHHH---------ccCCHHHHHHHHHHH
Q 006076          252 NVVSWSAMIACYAR-----NGMAFEALELFREMIMESHDLCPNS-VTMVSVLQACA---------ALAALEQGKMIHGYI  316 (662)
Q Consensus       252 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~  316 (662)
                      +...|...+.+-..     .+..++|+.+|++.  .  ...|+. ..+..+..++.         ..+++++|...++.+
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~A--l--~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQC--V--NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHH--H--hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            45566666665322     12357899999977  3  334554 34444433332         234578999999999


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-
Q 006076          317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI-  392 (662)
Q Consensus       317 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-  392 (662)
                      ++.. +.+...+..+...+...|++++|...|++..+  | +...|..+...|...|++++|+..+++..+  +.|+.. 
T Consensus       331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~  407 (553)
T PRK12370        331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAA  407 (553)
T ss_pred             HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChh
Confidence            8875 34677888888999999999999999998763  4 456788899999999999999999999998  456543 


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGP-KVWGSLLGSC  469 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~  469 (662)
                      .+..++..+...|++++|...+++..+..  +| ++..+..+...|...|+.++|...+.++ +..|+. ..++.+...+
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~  485 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY  485 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            33344555667899999999999886542  34 4556788889999999999999999987 344544 3455555666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ...|  +.|...++++++..-..+..+..+...|.-.|+-+.+..+ +++.+.+
T Consensus       486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            7666  4788878877753322222223366677778888887777 7777654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.06  E-value=3.3e-08  Score=98.35  Aligned_cols=211  Identities=16%  Similarity=0.085  Sum_probs=149.3

Q ss_pred             CHHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 006076          305 ALEQGKMIHGYILRRG-LDSI--LPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQI  378 (662)
Q Consensus       305 ~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~  378 (662)
                      ..+.+..-+.+++... ..|+  ...+..+...|.+.|+.++|...|++..+   .+...|+.+...|...|++++|++.
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4455666666666432 2222  45677788889999999999999987753   3567899999999999999999999


Q ss_pred             HHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CC
Q 006076          379 FKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RI  455 (662)
Q Consensus       379 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~  455 (662)
                      |++..+  +.|+ ..++..+..++...|++++|.+.|+...+.   .|+..........+...++.++|.+.+.+.  ..
T Consensus       121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            999988  5665 467777888888999999999999998754   454332222233345677899999999664  22


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          456 EPGPKVWGSLLGSCRIHCNVELAERASKRLF-------ELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      .|+...|   .......|+...+ ..++.+.       ++.|+.+.+|..|+.+|.+.|++++|...|++....++
T Consensus       196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3333222   2222334555444 2444443       34566677899999999999999999999998886543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.05  E-value=7.5e-07  Score=93.21  Aligned_cols=409  Identities=14%  Similarity=0.075  Sum_probs=254.6

Q ss_pred             CCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChh-h
Q 006076          110 GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRF-T  185 (662)
Q Consensus       110 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~-t  185 (662)
                      .+..|+.+|..|.-+..++|+++.+-+.|++...-   ....|+.+-..|...|.-..|+.+++.-...  .-.|+.. .
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~--~~~ps~~s~  395 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK--SEQPSDISV  395 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc--ccCCCcchH
Confidence            46778999999999999999999999999986543   4568999999999999999999999887654  2224333 3


Q ss_pred             HHHHHHHHHhCCCCccchHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHHcCCC
Q 006076          186 YTYVLKACVASSCGFSLLKHGKEIHASVLRH--GY--NGIVHIMTTLIDMYARF-----------GCVMYAGFVFSQMAV  250 (662)
Q Consensus       186 ~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~  250 (662)
                      +-..-+.|...   .+.++++...-..++..  +.  ......+-.+.-+|...           ....++.+.+++..+
T Consensus       396 ~Lmasklc~e~---l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~  472 (799)
T KOG4162|consen  396 LLMASKLCIER---LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ  472 (799)
T ss_pred             HHHHHHHHHhc---hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence            33333444432   22266666666666552  11  11233444444444422           123345566665532


Q ss_pred             C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCchh
Q 006076          251 K---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR-GLDSILP  326 (662)
Q Consensus       251 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~  326 (662)
                      .   |+.+.--+.--|+-.++.+.|++..++.  ..-+-.-+...|..+.-.++..+++.+|..+.+..... |...  .
T Consensus       473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~ea--L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~--~  548 (799)
T KOG4162|consen  473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREA--LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH--V  548 (799)
T ss_pred             cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHH--HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--h
Confidence            2   2222222333466778889999988888  44443456667777777778888888998888776543 2100  0


Q ss_pred             HHHHHHHHHHhcCChHHHHHHH-------h-------------------hCC----C-CC-hhHHHHHHHHHHhcCChHH
Q 006076          327 VVSALVTMYARCGKLELGQCVF-------D-------------------HMD----K-RD-VVSWNSLISSYGVHGYGGK  374 (662)
Q Consensus       327 ~~~~li~~y~~~g~~~~A~~~~-------~-------------------~m~----~-~~-~~~~~~li~~~~~~g~~~~  374 (662)
                      ....-+..-..-++.++|....       +                   .+.    + .| +.++..+..-....+  ..
T Consensus       549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~  626 (799)
T KOG4162|consen  549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KS  626 (799)
T ss_pred             hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hh
Confidence            0000011111133333333221       1                   111    0 11 112222211111100  00


Q ss_pred             HHHHHHHHHHcCCCCCH--------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076          375 AIQIFKEMIYHGVSPSP--------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA  446 (662)
Q Consensus       375 A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  446 (662)
                      +..-. .|...-+.|..        ..+......+...+..++|...+.+..+.  .+-....|......+...|.++||
T Consensus       627 ~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA  703 (799)
T KOG4162|consen  627 AGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEA  703 (799)
T ss_pred             ccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHH
Confidence            00000 02211122222        22344556778889999999888877543  244677888888899999999999


Q ss_pred             HHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          447 AKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAER--ASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       447 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      .+.|... -+.| ++.+..++...+...|+...|..  ++..+++++|.++.+|..|+.++-+.|+.++|...|....+-
T Consensus       704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            9998876 5566 46778899999999999888888  999999999999999999999999999999999999987654


Q ss_pred             CCcCCCceeEE
Q 006076          523 GLQKVPGRSRI  533 (662)
Q Consensus       523 ~~~~~~~~s~~  533 (662)
                      .- ..|-..|.
T Consensus       784 e~-S~PV~pFs  793 (799)
T KOG4162|consen  784 EE-SNPVLPFS  793 (799)
T ss_pred             cc-CCCccccc
Confidence            33 23444454

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.05  E-value=9.9e-06  Score=83.16  Aligned_cols=429  Identities=12%  Similarity=0.097  Sum_probs=264.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 006076           83 YELLLLSCTHHNSLSDALNVHSHLTDN-GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGR  161 (662)
Q Consensus        83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~  161 (662)
                      |..-+.....++++...+..|+..+.. .+.....+|...+......|-++-+..++++..+-++..-+-.|..+++.++
T Consensus       105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~  184 (835)
T KOG2047|consen  105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR  184 (835)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence            333445556678888888888877654 3344556788888888888888899999998887777778888999999999


Q ss_pred             ccHHHHHHHHHhhCCC----CCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhc
Q 006076          162 GEEVLELYRRMNGTGT----GIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI--VHIMTTLIDMYARF  235 (662)
Q Consensus       162 ~~~A~~l~~~m~~~~~----g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~  235 (662)
                      +++|-+.+...+..+.    .-+.+-..|.-+-...++..+. ..--....++...+..  -+|  ...|++|.+.|.+.
T Consensus       185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~-~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~  261 (835)
T KOG2047|consen  185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK-VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRS  261 (835)
T ss_pred             hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch-hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHh
Confidence            9999999988765410    1122333444444444444430 0011122233222222  233  47899999999999


Q ss_pred             CCHHHHHHHHHcCCCC--CHhHHHHHHHHHHH----------------cCC------hhHHHHHHHHHhhhhCCC-----
Q 006076          236 GCVMYAGFVFSQMAVK--NVVSWSAMIACYAR----------------NGM------AFEALELFREMIMESHDL-----  286 (662)
Q Consensus       236 g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~~~~~-----  286 (662)
                      |.++.|..+|++....  .+.-++.+-.+|++                .|+      .+-.+.-|+.+. ....+     
T Consensus       262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm-~rr~~~lNsV  340 (835)
T KOG2047|consen  262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM-NRRPLLLNSV  340 (835)
T ss_pred             hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH-hccchHHHHH
Confidence            9999999999886543  22223333333332                111      112222333331 11111     


Q ss_pred             -----cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006076          287 -----CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS------ILPVVSALVTMYARCGKLELGQCVFDHMDKRD  355 (662)
Q Consensus       287 -----~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~  355 (662)
                           +.+..+|..-..  ...|+..+-...+.++++. +.|      -...|..+.+.|-..|+++.|+.+|++..+-+
T Consensus       341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~  417 (835)
T KOG2047|consen  341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP  417 (835)
T ss_pred             HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence                 011122221111  1235566667777777764 122      23477889999999999999999999987643


Q ss_pred             hh-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------C-------CHhHHHHHHHHHhcCCCHHHHH
Q 006076          356 VV-------SWNSLISSYGVHGYGGKAIQIFKEMIYHGVS----------P-------SPISFVSVLGACSHAGLVEEGK  411 (662)
Q Consensus       356 ~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~g~~~~a~  411 (662)
                      -.       .|-.-...=.++.+++.|+++.++....--.          |       +...|...+.--...|-++...
T Consensus       418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk  497 (835)
T KOG2047|consen  418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK  497 (835)
T ss_pred             ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence            32       4555555556788899999988876542111          1       1122333444445567788888


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-C-CCCH-HHHHHHHHHHHhc---CCHHHHHHHHHH
Q 006076          412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-I-EPGP-KVWGSLLGSCRIH---CNVELAERASKR  484 (662)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~-~~~~~ll~~~~~~---g~~~~a~~~~~~  484 (662)
                      .+++.+..-. + .++...-...-.+-...-++++.+++++- + + -|+. ..|++.+.-+.+.   ...+.|..+|++
T Consensus       498 ~vYdriidLr-i-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq  575 (835)
T KOG2047|consen  498 AVYDRIIDLR-I-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ  575 (835)
T ss_pred             HHHHHHHHHh-c-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            8888887533 2 23333333444456677889999999976 2 2 2444 5788888765432   468999999999


Q ss_pred             HHhcCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          485 LFELEPTNA--GNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       485 ~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +++.-|+..  ..|...+..=-+-|.-..|..++++..
T Consensus       576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999877532  233334444445678888888888754

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.05  E-value=3.5e-08  Score=102.39  Aligned_cols=235  Identities=15%  Similarity=0.172  Sum_probs=148.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHcCCCC----------CHh-HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC-cCC
Q 006076          222 VHIMTTLIDMYARFGCVMYAGFVFSQMAVK----------NVV-SWSAMIACYARNGMAFEALELFREMIMESHDL-CPN  289 (662)
Q Consensus       222 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~  289 (662)
                      ..+...|..+|...|+++.|..+|....+.          .+. ..+.+...|...+++++|..+|+++......+ -++
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            455566778888888888888877664321          111 12234445555666666666665553111100 000


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----------CCChh-H
Q 006076          290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD----------KRDVV-S  358 (662)
Q Consensus       290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~~-~  358 (662)
                      .                               +.-..+++.|...|.+.|++++|...++...          .|.+. .
T Consensus       279 h-------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~  327 (508)
T KOG1840|consen  279 H-------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ  327 (508)
T ss_pred             C-------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence            0                               0112334444555666666665555444332          12332 3


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHhHHhc----C-CCC-
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYH---GVSPSP----ISFVSVLGACSHAGLVEEGKMLFESMRKEH----M-IRP-  425 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~~-  425 (662)
                      .+.++..+...+++++|..+++...+.   -+.++.    .+++.+...+.+.|++++|.++|+.+....    | ..+ 
T Consensus       328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~  407 (508)
T KOG1840|consen  328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG  407 (508)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence            556667777788888888888766542   123333    578888888999999999999998876532    1 122 


Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL--------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                      ....++.|...|.+.++.++|.++|.+.        +-.|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus       408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            2456788888999999999898888765        23344 36799999999999999999999998873

>PRK12370 invasion protein regulator; Provisional

Probab=99.04  E-value=3.8e-08  Score=106.97  Aligned_cols=226  Identities=14%  Similarity=0.023  Sum_probs=169.6

Q ss_pred             CHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCChHHHHHHHhhCCC-
Q 006076          289 NSVTMVSVLQACA-----ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR---------CGKLELGQCVFDHMDK-  353 (662)
Q Consensus       289 ~~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~-  353 (662)
                      +...|...+.+-.     ..+++++|...++++++... .+...+..+..+|..         .+++++|...+++..+ 
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            3444445555432     12457899999999987642 235566666665542         2447899999988764 


Q ss_pred             --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 006076          354 --RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEH  429 (662)
Q Consensus       354 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~  429 (662)
                        .+...|..+...+...|++++|+..|++..+.  .|+ ...+..+..++...|++++|...++...+.   .|+ ...
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~  408 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA  408 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence              36678888888999999999999999999984  565 456777888999999999999999999753   454 333


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhcC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDLR--IEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA  506 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  506 (662)
                      +..+...+...|++++|...+++.-  ..|+ +..+..+..++...|+.++|...++++....|.+......+...|...
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            3444555777899999999998872  2353 455677778888999999999999999888888777778888888888


Q ss_pred             CChHHHHHHHHHHHhC
Q 006076          507 DMWDEVKRVKRLLEAR  522 (662)
Q Consensus       507 g~~~~A~~~~~~m~~~  522 (662)
                      |  ++|...++.+.+.
T Consensus       489 g--~~a~~~l~~ll~~  502 (553)
T PRK12370        489 S--ERALPTIREFLES  502 (553)
T ss_pred             H--HHHHHHHHHHHHH
Confidence            8  5888888877653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=6.6e-07  Score=90.41  Aligned_cols=283  Identities=11%  Similarity=-0.004  Sum_probs=158.2

Q ss_pred             cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076          146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM  225 (662)
Q Consensus       146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  225 (662)
                      +..--.-..-+...+++.+.+++++...+.   .++....+..-|.++...++    ..+-..+-..+++. .|....+|
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~----~n~Lf~lsh~LV~~-yP~~a~sW  315 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEK---DPFHLPCLPLHIACLYELGK----SNKLFLLSHKLVDL-YPSKALSW  315 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcc----cchHHHHHHHHHHh-CCCCCcch
Confidence            333444445566678888888888888775   34555555555666666666    33333333344443 35566777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076          226 TTLIDMYARFGCVMYAGFVFSQMAVKN---VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA  302 (662)
Q Consensus       226 ~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~  302 (662)
                      -++.-.|.-.|+.++|++.|.+...-|   ...|-.....|+-.|..++|+..+......-.|.   .--+.-+---|.+
T Consensus       316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~---hlP~LYlgmey~~  392 (611)
T KOG1173|consen  316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC---HLPSLYLGMEYMR  392 (611)
T ss_pred             hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC---cchHHHHHHHHHH
Confidence            777777777788888888887654322   3467777777887787788777666542111221   0111112223455


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM  382 (662)
Q Consensus       303 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  382 (662)
                      .++++.|.++|.++.... +.|+.+.+-+.-++...+.+.+|..+|+...                        ...+..
T Consensus       393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l------------------------~~ik~~  447 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL------------------------EVIKSV  447 (611)
T ss_pred             hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH------------------------HHhhhc
Confidence            666666666666655442 3345555555444444455555555544221                        000000


Q ss_pred             HHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHH
Q 006076          383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKV  461 (662)
Q Consensus       383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~  461 (662)
                      ... ..--..+++.|..+|.+.+.+++|+..++.....  .+.+..++.++.-.|...|+++.|.+.|.+. .+.||..+
T Consensus       448 ~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  448 LNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             ccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            000 0012345566666666666666666666666532  2446666666666666666777766666655 45666655


Q ss_pred             HHHHHH
Q 006076          462 WGSLLG  467 (662)
Q Consensus       462 ~~~ll~  467 (662)
                      -..++.
T Consensus       525 ~~~lL~  530 (611)
T KOG1173|consen  525 ISELLK  530 (611)
T ss_pred             HHHHHH
Confidence            555554

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.96  E-value=3.5e-07  Score=91.02  Aligned_cols=228  Identities=10%  Similarity=-0.058  Sum_probs=148.0

Q ss_pred             CChhHHHHHHHHHhhhhCCCcCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 006076          267 GMAFEALELFREMIMESHDLCPN--SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELG  344 (662)
Q Consensus       267 g~~~~A~~~~~~m~~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  344 (662)
                      +..+.++.-+.+++ ......|+  ...|......+...|+.++|...+..+++.. +.+...++.+...|...|++++|
T Consensus        40 ~~~e~~i~~~~~~l-~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQIL-ASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHH-ccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            45566666666663 12222232  2345555556677788888888777777764 33577888888889999999999


Q ss_pred             HHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc
Q 006076          345 QCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH  421 (662)
Q Consensus       345 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  421 (662)
                      ...|++..+  | +..+|..+...+...|++++|++.|++..+  ..|+..........+...++.++|...|...... 
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-  194 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-  194 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence            988887753  4 456788888888899999999999999887  4565432222222344567899999999765432 


Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHH--HHHHHHhc-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 006076          422 MIRPSVEHYACMVDLLGRANKLEE--AAKIIEDL-RI----EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN-  492 (662)
Q Consensus       422 ~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-  492 (662)
                       ..|+... ..++..+  .|++.+  +.+.+.+- ..    .| ....|..+...+...|+.++|...|+++++.+|.+ 
T Consensus       195 -~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        195 -LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             -CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence             2333322 2333333  444433  33223221 11    12 34578899999999999999999999999999754 


Q ss_pred             cchHHHHHHHH
Q 006076          493 AGNYVLLADVY  503 (662)
Q Consensus       493 ~~~~~~l~~~~  503 (662)
                      ..+-..++...
T Consensus       271 ~e~~~~~~e~~  281 (296)
T PRK11189        271 VEHRYALLELA  281 (296)
T ss_pred             HHHHHHHHHHH
Confidence            33333444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=4.1e-08  Score=92.09  Aligned_cols=221  Identities=12%  Similarity=0.006  Sum_probs=138.6

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHH-HHHHHHHHhcCChHH
Q 006076          298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSW-NSLISSYGVHGYGGK  374 (662)
Q Consensus       298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~-~~li~~~~~~g~~~~  374 (662)
                      ..|.++|.+.+|+..++...+.  .|-+.+|-.|-..|.+..+.+.|..+|.+-.+  |.-+|| .-+...+-..++.++
T Consensus       231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~  308 (478)
T KOG1129|consen  231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED  308 (478)
T ss_pred             HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence            3334444444444444443333  22233444444555555555555555554442  322332 234444555566666


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076          375 AIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR  454 (662)
Q Consensus       375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  454 (662)
                      |.++|++..+.. ..+......+...|.-.++++-|..++.++.. .|+ .+++.|+.+.-.|.-.++++-++.-|.+..
T Consensus       309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            666666666531 22334444555556666666777777666653 333 456666666666666666666666666541


Q ss_pred             ---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          455 ---IEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       455 ---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                         -.|+  ..+|-.|.......||+..|.+.|+..+..+|++..+++.|+-+-.+.|++++|..++.......
T Consensus       386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence               1233  45688888888888999999999999999999999999999999999999999999999887644

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.95  E-value=1.5e-06  Score=89.94  Aligned_cols=432  Identities=12%  Similarity=0.075  Sum_probs=223.8

Q ss_pred             hhhccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh-cCCCCCHhhHHHHHHHHhcCCChH
Q 006076           20 NSIAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS-IEPNPTQHTYELLLLSCTHHNSLS   97 (662)
Q Consensus        20 ~li~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~   97 (662)
                      +++.+.. .+..|..+|   +.+.++..        -|..|....++++|+.+-+ .+.+.-...-.+-++++...|+-+
T Consensus       538 a~lail~kkfk~ae~if---leqn~te~--------aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~  606 (1636)
T KOG3616|consen  538 AMLAILEKKFKEAEMIF---LEQNATEE--------AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDE  606 (1636)
T ss_pred             HHHHHHHhhhhHHHHHH---HhcccHHH--------HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchh
Confidence            3444444 788888888   23333332        7888888899999999888 433323333344456666666666


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHh--cCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhC
Q 006076           98 DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFD--KTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT  175 (662)
Q Consensus        98 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  175 (662)
                      .|-++-    .     +.--.-+-|+.|.+.|.+..|.+.-.  +....|......+..++.+..-+++|=.+|+++...
T Consensus       607 ka~elk----~-----sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~  677 (1636)
T KOG3616|consen  607 KAAELK----E-----SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF  677 (1636)
T ss_pred             hhhhhc----c-----ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH
Confidence            554432    1     11223456889999999888877652  222234444444445555555555555555554321


Q ss_pred             CCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH------------------------H---HH
Q 006076          176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM------------------------T---TL  228 (662)
Q Consensus       176 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------------~---~l  228 (662)
                                 .-.+..+.+...    +-+|.++-..    .++..+...                        |   .-
T Consensus       678 -----------dkale~fkkgda----f~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  678 -----------DKALECFKKGDA----FGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             -----------HHHHHHHHcccH----HHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence                       111111111111    2222221111    011111000                        0   11


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCHhH--HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH
Q 006076          229 IDMYARFGCVMYAGFVFSQMAVKNVVS--WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL  306 (662)
Q Consensus       229 i~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~  306 (662)
                      +.+-.....+.+|..+++.+..+++.+  |..+..-|+..|+++.|.++|.+.     +      .+.-.+..|.+.|.+
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~------~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----D------LFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----c------hhHHHHHHHhccccH
Confidence            222233444555555555554443332  444445555555555555555433     1      123344455555555


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006076          307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG  386 (662)
Q Consensus       307 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  386 (662)
                      +.|.++-.+.  .|.+.....|-+-..-+-+.|++.+|++++-.+..|+.     -|..|-++|..+..+++..+-    
T Consensus       808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~----  876 (1636)
T KOG3616|consen  808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH----  876 (1636)
T ss_pred             HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh----
Confidence            5554443322  22233344444444444555555555555555555543     244555666666555555442    


Q ss_pred             CCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CCCHH
Q 006076          387 VSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI----EPGPK  460 (662)
Q Consensus       387 ~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~  460 (662)
                       .|+.  .|-..+..-+...|++..|..-|-+..          -|.+-+++|-..+.+++|.++-+.-+-    +.-..
T Consensus       877 -h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f  945 (1636)
T KOG3616|consen  877 -HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF  945 (1636)
T ss_pred             -ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence             2332  455566666777888888877665442          245677888888999999888765430    11123


Q ss_pred             HHHH------HHHHHHhcCCHHHHHHHH------HHHHh-----cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          461 VWGS------LLGSCRIHCNVELAERAS------KRLFE-----LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       461 ~~~~------ll~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      .|.-      -+..+.++|-.+.|....      +-+++     .....+....-++..+...|++++|.+-+-+..+.+
T Consensus       946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            3432      122344555555554432      11111     122234567777888889999999988776665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=1.9e-06  Score=82.00  Aligned_cols=129  Identities=15%  Similarity=0.061  Sum_probs=63.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHh
Q 006076          360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY-ACMVDLLG  438 (662)
Q Consensus       360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~  438 (662)
                      .+|.+.+.-..++++.+-.+.....- +..|..--..+..|.+..|++.+|.++|-.+. ...++ |..+| ..|...|.
T Consensus       363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi  439 (557)
T KOG3785|consen  363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYI  439 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHH
Confidence            34444444445555555555555443 22222222334555666666666666665553 11122 22233 33445566


Q ss_pred             hcCCHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          439 RANKLEEAAKIIEDLRIEPGPKVWGS-LLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      ++++++-|++++-++....+..+... +.+-|.+.+.+--|-++|..+..++|.
T Consensus       440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence            66666666666666542223333322 224455556666666666666656554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=1.8e-06  Score=82.12  Aligned_cols=438  Identities=13%  Similarity=0.098  Sum_probs=221.9

Q ss_pred             HHHHHhCCCchHHHHHHh--cCCC-CCHhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCh
Q 006076           56 IQSLCKQGNLRQALDVLS--IEPN-PTQHTYELLLLS-CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV  131 (662)
Q Consensus        56 i~~~~~~g~~~~A~~~~~--~~~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  131 (662)
                      +.-+..+.++..|+.+++  .... -.......-+.. +-+.|++++|...+..+.... .++..++-.|.-.+.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            455566667777777776  1111 111233333333 346677777777776665533 44555555555555555667


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHH
Q 006076          132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA  211 (662)
Q Consensus       132 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~  211 (662)
                      .+|..+-.+.++ ++..-..|...-.+.|+-++-+.+-..+...    .-|..+..++-  |.+..     +++|..++.
T Consensus       108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvh--YmR~H-----YQeAIdvYk  175 (557)
T KOG3785|consen  108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVH--YMRMH-----YQEAIDVYK  175 (557)
T ss_pred             HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHH--HHHHH-----HHHHHHHHH
Confidence            777666655443 2222223333334445544444444433321    12222222221  11111     556666666


Q ss_pred             HHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHcCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCc
Q 006076          212 SVLRHGYNGIVHIMTT-LIDMYARFGCVMYAGFVFSQMA---VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC  287 (662)
Q Consensus       212 ~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  287 (662)
                      .++..+  |+-...|. +.-.|.|..-++-+.++++--.   ..+++.-|.......+.=....|..-.+++  ...+-.
T Consensus       176 rvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l--adN~~~  251 (557)
T KOG3785|consen  176 RVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL--ADNIDQ  251 (557)
T ss_pred             HHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH--Hhcccc
Confidence            555432  22222222 2223445554554444433221   113344444443333322222222222222  111100


Q ss_pred             CCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHH
Q 006076          288 PNSVTMVSVLQACA----ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLI  363 (662)
Q Consensus       288 p~~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li  363 (662)
                        .  |--.-..|.    --.+-+.|.+++--+.+.    =+..--.|+--|.+.+++++|..+.+.+....+.-|-.-.
T Consensus       252 --~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKg  323 (557)
T KOG3785|consen  252 --E--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKG  323 (557)
T ss_pred             --c--chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHH
Confidence              0  111111111    112334444444333332    1223344666788999999999998888654444332222


Q ss_pred             HHHHhcCC-------hHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076          364 SSYGVHGY-------GGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD  435 (662)
Q Consensus       364 ~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  435 (662)
                      -.++..|+       ..-|.+.|+-.-..+..-|.. ---++.+++.-.-++++.+-++..+. .+=...|...+ .+..
T Consensus       324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQ  401 (557)
T KOG3785|consen  324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQ  401 (557)
T ss_pred             HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHH
Confidence            22333332       334555555444444443332 22344455555667888888888885 44233344444 5788


Q ss_pred             HHhhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC-CCC-cchHHHHHHHHHhcCChH
Q 006076          436 LLGRANKLEEAAKIIEDLR-IE-PGPKVWGSLLGSC-RIHCNVELAERASKRLFELE-PTN-AGNYVLLADVYAAADMWD  510 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~  510 (662)
                      +++..|.+.+|+++|-.+. .+ .|..+|.+++.-| .+.+..+.|..   .++..+ |.+ ......+++-|.+++.+-
T Consensus       402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFy  478 (557)
T KOG3785|consen  402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD---MMLKTNTPSERFSLLQLIANDCYKANEFY  478 (557)
T ss_pred             HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH---HHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998873 11 3677887777654 56677777644   445444 322 334556788889999999


Q ss_pred             HHHHHHHHHHhCC
Q 006076          511 EVKRVKRLLEARG  523 (662)
Q Consensus       511 ~A~~~~~~m~~~~  523 (662)
                      -|.+.|+.+...+
T Consensus       479 yaaKAFd~lE~lD  491 (557)
T KOG3785|consen  479 YAAKAFDELEILD  491 (557)
T ss_pred             HHHHhhhHHHccC
Confidence            9999999887644

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.90  E-value=1.8e-05  Score=83.57  Aligned_cols=254  Identities=17%  Similarity=0.154  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076          255 SWSAMIACYARNGMAFEALELFREMIMESHDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT  333 (662)
Q Consensus       255 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  333 (662)
                      ++.-+...|-..|++++|+++.++.  ..  ..|+ ...|..-...+-+.|++++|....+.+..... .|.++-+..+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~a--I~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aK  270 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKA--IE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH--Hh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHH
Confidence            3455667788889999999999876  32  3455 45677777788889999999999988887763 37777788888


Q ss_pred             HHHhcCChHHHHHHHhhCCCCChh----------HH--HHHHHHHHhcCChHHHHHHHHHHHHc--CCC-----------
Q 006076          334 MYARCGKLELGQCVFDHMDKRDVV----------SW--NSLISSYGVHGYGGKAIQIFKEMIYH--GVS-----------  388 (662)
Q Consensus       334 ~y~~~g~~~~A~~~~~~m~~~~~~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-----------  388 (662)
                      .+.++|++++|.+++....+++..          .|  ..-..+|.+.|++..|++-|....+.  .+.           
T Consensus       271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~  350 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCL  350 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            889999999999988877654421          23  33466788999998888877665442  111           


Q ss_pred             --CCHhHHHHHHHHHhcCCC-------HHHHHHHHHHhHHhcCCCC-----------ChHHHHHHHHHH---hhcCCHHH
Q 006076          389 --PSPISFVSVLGACSHAGL-------VEEGKMLFESMRKEHMIRP-----------SVEHYACMVDLL---GRANKLEE  445 (662)
Q Consensus       389 --p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~---~~~g~~~~  445 (662)
                        .+..+|..+|.-.-+...       ...|.+++-.+........           +..--..+-.--   .+...-++
T Consensus       351 RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~  430 (517)
T PF12569_consen  351 RKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEE  430 (517)
T ss_pred             hhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHH
Confidence              223344444443322211       1234444444432110000           000001111000   11111111


Q ss_pred             HHHHHH-----------hc----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          446 AAKIIE-----------DL----R--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       446 A~~~~~-----------~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      +...-.           +.    +  ..||+.- ..|+   ....-.++|.++++-+.+..|++..+|..--++|.+.|+
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K  506 (517)
T PF12569_consen  431 AEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGK  506 (517)
T ss_pred             HHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCc
Confidence            211110           00    1  1122211 1122   123457889999999999999999999999999999999


Q ss_pred             hHHHHHHHH
Q 006076          509 WDEVKRVKR  517 (662)
Q Consensus       509 ~~~A~~~~~  517 (662)
                      +--|.+.+.
T Consensus       507 ~LLaLqaL~  515 (517)
T PF12569_consen  507 YLLALQALK  515 (517)
T ss_pred             HHHHHHHHH
Confidence            988887664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.89  E-value=1.9e-07  Score=83.87  Aligned_cols=163  Identities=16%  Similarity=0.087  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      +...|.-+|.+.|+...|.+-+++.++  ..|+. .++..+...|.+.|..+.|.+-|+...+..  +.+-.+.|...-.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F  112 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence            345567788999999999999999888  45654 678888888999999999999999887532  3367788999999


Q ss_pred             HhhcCCHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076          437 LGRANKLEEAAKIIEDLRIEP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV  512 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  512 (662)
                      +|..|++++|...|++.-..|    -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.+...+.|++-+|
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            999999999999999873233    3467888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 006076          513 KRVKRLLEARGL  524 (662)
Q Consensus       513 ~~~~~~m~~~~~  524 (662)
                      ...++....++.
T Consensus       193 r~~~~~~~~~~~  204 (250)
T COG3063         193 RLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHhccc
Confidence            999998887654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.86  E-value=7.7e-08  Score=90.28  Aligned_cols=230  Identities=13%  Similarity=0.104  Sum_probs=189.0

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006076          257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYA  336 (662)
Q Consensus       257 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  336 (662)
                      +.|..+|.+.|.+.+|.+.|+..  ..  -.|-..||..+-.+|.+..+++.|..++.+-++. ++-|+....-....+-
T Consensus       227 ~Q~gkCylrLgm~r~Aekqlqss--L~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSS--LT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHH--hh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence            67889999999999999999866  32  3467778888889999999999999999887765 3445555566777888


Q ss_pred             hcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 006076          337 RCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML  413 (662)
Q Consensus       337 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  413 (662)
                      ..++.++|.++++...+   .|+.+...+..+|.-.++.+-|+..|+++++.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            88999999999998874   46667777888899999999999999999999965 567888888899999999999999


Q ss_pred             HHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076          414 FESMRKEHMIRPS--VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE  489 (662)
Q Consensus       414 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  489 (662)
                      |++..... -.|+  ..+|..+.....-.|++.-|.+.|+-. ...| ....++.|.-.-.+.|+++.|..+++.+....
T Consensus       381 f~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  381 FQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            99886432 2343  467888988899999999999999876 2233 56788888888889999999999999999998


Q ss_pred             CCCc
Q 006076          490 PTNA  493 (662)
Q Consensus       490 p~~~  493 (662)
                      |+-.
T Consensus       460 P~m~  463 (478)
T KOG1129|consen  460 PDMA  463 (478)
T ss_pred             cccc
Confidence            8743

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.80  E-value=8.9e-06  Score=84.35  Aligned_cols=190  Identities=14%  Similarity=0.263  Sum_probs=93.3

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006076          302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKE  381 (662)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  381 (662)
                      ....+.+|..+++.+......  ..-|.-+.+-|+..|+++.|+++|-+..     .++--|..|.+.|+++.|.++-.+
T Consensus       744 ~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e  816 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEE  816 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHH
Confidence            334444555555444433211  1233444555555555555555554331     233344555555555555555443


Q ss_pred             HHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHH
Q 006076          382 MIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKV  461 (662)
Q Consensus       382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~  461 (662)
                      ..  |.......|.+-..-.-..|++.+|.+++-.+.     .|+.     -|.+|-+.|..++.+++.++-.-..-..|
T Consensus       817 ~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt  884 (1636)
T KOG3616|consen  817 CH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDT  884 (1636)
T ss_pred             hc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHH
Confidence            32  122223333333334445555555555543331     2332     34555555555555555554310111123


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      -..+..-+-..|+...|+.-|-++        .-+..-+++|-..+.|++|.++-+.
T Consensus       885 ~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriakt  933 (1636)
T KOG3616|consen  885 HKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKT  933 (1636)
T ss_pred             HHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence            333444455556666655544433        3355667888888999988887664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.80  E-value=0.00017  Score=74.65  Aligned_cols=432  Identities=11%  Similarity=0.025  Sum_probs=229.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcC
Q 006076           84 ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAG  160 (662)
Q Consensus        84 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g  160 (662)
                      ..+++. -..+++..+..+...+++. .+-...+.....-.+...|+-++|......-.+   ++.+.|..+.-.+-...
T Consensus        12 ~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK   89 (700)
T KOG1156|consen   12 RRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK   89 (700)
T ss_pred             HHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence            334443 3456677777777777663 222333333333334456788888777765443   35578888877777778


Q ss_pred             CccHHHHHHHHHhhCCCCCCCChh-hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006076          161 RGEEVLELYRRMNGTGTGIRSDRF-TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVM  239 (662)
Q Consensus       161 ~~~~A~~l~~~m~~~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  239 (662)
                      ++++|+..|+.....    .||.. .+.-+--.-++.++    ++.....-....+.. +.....|..+..++.-.|+..
T Consensus        90 ~Y~eaiKcy~nAl~~----~~dN~qilrDlslLQ~QmRd----~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~  160 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKI----EKDNLQILRDLSLLQIQMRD----YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK  160 (700)
T ss_pred             hHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence            888888888887754    45443 22222222233344    444444444443332 233445666666666667777


Q ss_pred             HHHHHHHcCCC-----CCHhHHHHH------HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH-HHHHHHHccCCHH
Q 006076          240 YAGFVFSQMAV-----KNVVSWSAM------IACYARNGMAFEALELFREMIMESHDLCPNSVTMV-SVLQACAALAALE  307 (662)
Q Consensus       240 ~A~~~f~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~-~ll~a~~~~~~~~  307 (662)
                      .|..+.+....     ++...+.-.      ......+|..++|++.+..-  +  +-..|...+. +-...+.+.++++
T Consensus       161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~--e--~~i~Dkla~~e~ka~l~~kl~~lE  236 (700)
T KOG1156|consen  161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN--E--KQIVDKLAFEETKADLLMKLGQLE  236 (700)
T ss_pred             HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh--h--hHHHHHHHHhhhHHHHHHHHhhHH
Confidence            77776655431     233222221      23345667777777766543  1  1112333222 2334456777778


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHHhhCCC--CChhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 006076          308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ-CVFDHMDK--RDVVSWNSLISSYGVHGYG-GKAIQIFKEMI  383 (662)
Q Consensus       308 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~  383 (662)
                      +|..++..++... +.+...|-.+..++.+--+.-++. .+|....+  |-...-.-+--......++ +..-+++..+.
T Consensus       237 eA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l  315 (700)
T KOG1156|consen  237 EAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLL  315 (700)
T ss_pred             hHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence            8887777777764 223333444445554333333333 45554432  0000000000001111222 23334556666


Q ss_pred             HcCCCCCHhHHHHHHHHHhcCCCHHH----HHHHHHHhHHhc--------C-CCCChH--HHHHHHHHHhhcCCHHHHHH
Q 006076          384 YHGVSPSPISFVSVLGACSHAGLVEE----GKMLFESMRKEH--------M-IRPSVE--HYACMVDLLGRANKLEEAAK  448 (662)
Q Consensus       384 ~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~--------~-~~~~~~--~~~~li~~~~~~g~~~~A~~  448 (662)
                      +.|++|--..+.++.   -.-...+-    +..+...+....        . -+|+..  ++-.++..|-+.|+++.|..
T Consensus       316 ~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~  392 (700)
T KOG1156|consen  316 SKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE  392 (700)
T ss_pred             hcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence            777665333333322   21111111    111111111000        0 134443  44567788889999999999


Q ss_pred             HHHhc-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc-
Q 006076          449 IIEDL-RIEPGPK-VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ-  525 (662)
Q Consensus       449 ~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-  525 (662)
                      +++.. ...|+.+ .|..-...+...|+.++|...++++.+++-.|...-.--+.-..++.+.++|.++..+....|.. 
T Consensus       393 yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~  472 (700)
T KOG1156|consen  393 YIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA  472 (700)
T ss_pred             HHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence            98876 4456543 34444466777889999999999999988655433334556667888999999988887765531 


Q ss_pred             ----CCCceeEEE
Q 006076          526 ----KVPGRSRIE  534 (662)
Q Consensus       526 ----~~~~~s~~~  534 (662)
                          .+..|.|..
T Consensus       473 ~~~L~~mqcmWf~  485 (700)
T KOG1156|consen  473 VNNLAEMQCMWFQ  485 (700)
T ss_pred             hhhHHHhhhHHHh
Confidence                123467754

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=0.0001  Score=79.46  Aligned_cols=157  Identities=17%  Similarity=0.231  Sum_probs=118.7

Q ss_pred             CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076          339 GKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR  418 (662)
Q Consensus       339 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  418 (662)
                      +.++.|.+.-++..+  ...|..+..+-.+.|...+|++-|-+.      -|+..|.-++.++++.|.+++-..++...+
T Consensus      1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred             hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344444444444333  356899999999999999999888542      356789999999999999999999998876


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076          419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL  498 (662)
Q Consensus       419 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  498 (662)
                      ++ .-+|.+.  +.||-+|++.+++.|-++++.    .|+..-...+..-|...+.++.|.-++..        .+.|.-
T Consensus      1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAK 1225 (1666)
T ss_pred             Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHH
Confidence            54 3455544  579999999999999877764    47777777888889999999988877764        456777


Q ss_pred             HHHHHHhcCChHHHHHHHHH
Q 006076          499 LADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       499 l~~~~~~~g~~~~A~~~~~~  518 (662)
                      |+..+...|.+..|...-++
T Consensus      1226 La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            77777777877777665444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.78  E-value=1.4e-05  Score=84.02  Aligned_cols=408  Identities=15%  Similarity=0.097  Sum_probs=241.3

Q ss_pred             CCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC-----CcchH
Q 006076           75 EPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR-----TIYVW  149 (662)
Q Consensus        75 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~  149 (662)
                      ..+.|...|..+.-+....|+++.+-+.|++....-+ -....|+.+-..|..+|.-..|..+.++-..+     |+..+
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            3446777888887778888888888888887766432 34567777888888888888888888654332     22222


Q ss_pred             HHHHHHHHh-cCCccHHHHHHHHHhhCC----CCCCCChhhHHHHHHHHHhC------CC-CccchHHHHHHHHHHHHhC
Q 006076          150 NALFRALTL-AGRGEEVLELYRRMNGTG----TGIRSDRFTYTYVLKACVAS------SC-GFSLLKHGKEIHASVLRHG  217 (662)
Q Consensus       150 ~~li~~~~~-~g~~~~A~~l~~~m~~~~----~g~~p~~~t~~~ll~~~~~~------~~-~~~~~~~a~~~~~~~~~~g  217 (662)
                      -..-..|.+ -+..+++++.-.+.....    ..++|-..  -.+--+|...      .+ +.....++.+.++..++.+
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~--l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGY--LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHH--HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            222222322 355666665555544410    01333222  2211111110      00 1222566777788877765


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH
Q 006076          218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA----VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTM  293 (662)
Q Consensus       218 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~  293 (662)
                       +.|..+.-.|.--|+-.++++.|.+...+..    ..+...|..+.-.+...+++.+|+.+.+... ...|.  |....
T Consensus       475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al-~E~~~--N~~l~  550 (799)
T KOG4162|consen  475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL-EEFGD--NHVLM  550 (799)
T ss_pred             -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhhh--hhhhc
Confidence             3333333334445667778888877766543    3467888888888888888888888877663 22221  11111


Q ss_pred             HHHHHHHHccCCHHHHHHH-------HH----------HHH----HhCC-------CCchhHHHHHHHHHHh---cCChH
Q 006076          294 VSVLQACAALAALEQGKMI-------HG----------YIL----RRGL-------DSILPVVSALVTMYAR---CGKLE  342 (662)
Q Consensus       294 ~~ll~a~~~~~~~~~a~~~-------~~----------~~~----~~g~-------~~~~~~~~~li~~y~~---~g~~~  342 (662)
                      ..-+..-...++.+++...       |+          +..    +.|+       ...+.++..+......   .-..+
T Consensus       551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se  630 (799)
T KOG4162|consen  551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE  630 (799)
T ss_pred             hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence            1111111112222222211       11          111    1111       1112233322222221   11111


Q ss_pred             HHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHH
Q 006076          343 LGQCVFDHMDKRD------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFE  415 (662)
Q Consensus       343 ~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~  415 (662)
                      .....+...+.|+      ...|......+.+.++.++|...+.+...  +.| ....|......+...|..++|.+.|.
T Consensus       631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~  708 (799)
T KOG4162|consen  631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL  708 (799)
T ss_pred             cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence            1112222222333      23566777888899999999988888776  334 33455555566777899999999998


Q ss_pred             HhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHH--HHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076          416 SMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAK--IIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP  490 (662)
Q Consensus       416 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  490 (662)
                      ....   +.| ++....++..++.+.|+..-|..  ++.++ .+.| +...|-.+...+.+.|+.+.|-..|.-..++++
T Consensus       709 ~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  709 VALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            8764   456 57788999999999998777776  77776 5566 678999999999999999999999999999987


Q ss_pred             CCcc
Q 006076          491 TNAG  494 (662)
Q Consensus       491 ~~~~  494 (662)
                      .+|.
T Consensus       786 S~PV  789 (799)
T KOG4162|consen  786 SNPV  789 (799)
T ss_pred             CCCc
Confidence            7653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.76  E-value=4.4e-06  Score=88.05  Aligned_cols=148  Identities=13%  Similarity=0.081  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc----C---------CCCCh--HHHHHHHHHHh
Q 006076          374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH----M---------IRPSV--EHYACMVDLLG  438 (662)
Q Consensus       374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~--~~~~~li~~~~  438 (662)
                      .+..++..+...|+++   +|+.|-.-|......+-..+++.......    .         -+|+.  .++.-+...|.
T Consensus       129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd  205 (517)
T PF12569_consen  129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD  205 (517)
T ss_pred             HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence            3445556666777544   44444444554444444444444443211    0         12333  34456677788


Q ss_pred             hcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076          439 RANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK  516 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  516 (662)
                      ..|++++|++++++. ...|+ +..|..-...+...|++++|...++.+.++++.|...-.-.+..+.++|++++|.++.
T Consensus       206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888999999888866 45565 4567777778888899999999999998888887666666777888889999998888


Q ss_pred             HHHHhCCC
Q 006076          517 RLLEARGL  524 (662)
Q Consensus       517 ~~m~~~~~  524 (662)
                      ......+.
T Consensus       286 ~~Ftr~~~  293 (517)
T PF12569_consen  286 SLFTREDV  293 (517)
T ss_pred             HhhcCCCC
Confidence            88776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=2.6e-07  Score=93.61  Aligned_cols=219  Identities=11%  Similarity=0.065  Sum_probs=175.1

Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 006076          300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAI  376 (662)
Q Consensus       300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~  376 (662)
                      +.+.|++.+|.-.|+..++.. +.+...|.-|....+..++-..|+..+.+..+   .|....-+|...|...|.-.+|+
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence            357788999999999988875 44688888898888988888888888887764   46677888888999999999999


Q ss_pred             HHHHHHHHcCCC-----C---CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006076          377 QIFKEMIYHGVS-----P---SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK  448 (662)
Q Consensus       377 ~~~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  448 (662)
                      +.++.-.....+     +   +..+-..  ..+.+...+.+..++|-.+....+..+|+.++..|.-.|--.|.+++|.+
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            999887653211     0   1100000  12223334556667777777666666889999999999999999999999


Q ss_pred             HHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          449 IIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       449 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .|+.. .++| |..+||-|....+...+.++|...|.+++++.|.-..+...|+-.|...|.++||.+.+=....
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99987 5677 6788999999999999999999999999999999999999999999999999999998876543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=0.00012  Score=78.90  Aligned_cols=443  Identities=12%  Similarity=0.107  Sum_probs=240.3

Q ss_pred             Hhhccc---cchhhhccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCC-------
Q 006076           11 QLLRSP---YHTNSIAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT-------   79 (662)
Q Consensus        11 ~~~g~~---~~~~li~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~-------   79 (662)
                      +..|..   +.|+|-..|- +-....+++ .+-+.-|+         ..+.-||...++--|.-.|++|..-.       
T Consensus       865 i~eG~~d~a~hnAlaKIyIDSNNnPE~fL-keN~yYDs---------~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcN  934 (1666)
T KOG0985|consen  865 IQEGSQDPATHNALAKIYIDSNNNPERFL-KENPYYDS---------KVVGKYCEKRDPHLACVAYERGQCDLELINVCN  934 (1666)
T ss_pred             HhccCcchHHHhhhhheeecCCCChHHhc-ccCCcchh---------hHHhhhhcccCCceEEEeecccCCcHHHHHhcC
Confidence            345654   8899999888 445555555 44333222         26677787777776665555332210       


Q ss_pred             -HhhHHHHHHHHhcCCChH-----------HHHHHHHHHHHhCC--CCChhHHHHHHHHhhcCCChHHHHHHHhcCCC-C
Q 006076           80 -QHTYELLLLSCTHHNSLS-----------DALNVHSHLTDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRR-R  144 (662)
Q Consensus        80 -~~~~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~  144 (662)
                       ...|-...+-+....+.+           --+++.++.+..++  ..|+.-.+.-+.++...+-..+-.++++++.- +
T Consensus       935 eNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~ 1014 (1666)
T KOG0985|consen  935 ENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1014 (1666)
T ss_pred             chhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC
Confidence             111222222222222222           12344445554443  23444445556666666666666666666542 2


Q ss_pred             Cc-----chHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCC
Q 006076          145 TI-----YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYN  219 (662)
Q Consensus       145 ~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~  219 (662)
                      ++     ..-|.||-...+ -+.....+..+++-.-   -.|+.      ...+....-    +++|..+|...     .
T Consensus      1015 S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny---Da~~i------a~iai~~~L----yEEAF~ifkkf-----~ 1075 (1666)
T KOG0985|consen 1015 SVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY---DAPDI------AEIAIENQL----YEEAFAIFKKF-----D 1075 (1666)
T ss_pred             cccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC---CchhH------HHHHhhhhH----HHHHHHHHHHh-----c
Confidence            22     223333333332 2334445555544322   11221      112222222    56666666442     3


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH
Q 006076          220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA  299 (662)
Q Consensus       220 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a  299 (662)
                      .+....+.||+   .-+.++.|.+.-++..+|  ..|+.+..+-.+.|...+|++-|-+.        -|+..|.-+++.
T Consensus      1076 ~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~ 1142 (1666)
T KOG0985|consen 1076 MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDV 1142 (1666)
T ss_pred             ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHH
Confidence            34444444544   346677777777776654  57999999999999999999988755        377889999999


Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhH---------------------
Q 006076          300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVS---------------------  358 (662)
Q Consensus       300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~---------------------  358 (662)
                      +.+.|.+++-.+++..+.+..-+|.  +-+.||-+|++.+++.+-++++.   -||+.-                     
T Consensus      1143 a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1143 ASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred             HHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence            9999999999999988888766665  45679999999999988776654   344443                     


Q ss_pred             -----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076          359 -----WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM  433 (662)
Q Consensus       359 -----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  433 (662)
                           |..|...+...|++..|...-++.      .+..||.-+-.||...+.+..|.     |.. ..+.....-..-|
T Consensus      1218 ~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeel 1285 (1666)
T KOG0985|consen 1218 SNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEEL 1285 (1666)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHH
Confidence                 444444444444444444333321      13345555555555544443321     110 1122233445556


Q ss_pred             HHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCChH
Q 006076          434 VDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFE-LEPTNAGNYVLLADVYAAADMWD  510 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~  510 (662)
                      +..|-..|.++|-+.+++.. +++. .-..|+-|.-.|++-. .++..+.++-... ++      .--++.+.-++.-|.
T Consensus      1286 i~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvN------ipKviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVN------IPKVIRAAEQAHLWS 1358 (1666)
T ss_pred             HHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHH
Confidence            66677777777766666654 3322 3334444444444432 3333333332221 11      112455556666666


Q ss_pred             HHHHHHHHH
Q 006076          511 EVKRVKRLL  519 (662)
Q Consensus       511 ~A~~~~~~m  519 (662)
                      |..-++.+-
T Consensus      1359 ElvfLY~~y 1367 (1666)
T KOG0985|consen 1359 ELVFLYDKY 1367 (1666)
T ss_pred             HHHHHHHhh
Confidence            666655543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.72  E-value=0.0006  Score=70.70  Aligned_cols=411  Identities=12%  Similarity=0.036  Sum_probs=194.7

Q ss_pred             HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCCccHHH
Q 006076           90 CTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR---RRTIYVWNALFRALTLAGRGEEVL  166 (662)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~  166 (662)
                      +...|+-++|....+..++..+ .+.+.|..+.-.+-...++++|.+.|....   ..|...|.-+--.-++.++++...
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence            3445666666666665555432 234455555555555566777777765432   234445554444444555665555


Q ss_pred             HHHHHHhhCCCCCCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhC-CCCchhHHHHHHH------HHHhcCCH
Q 006076          167 ELYRRMNGTGTGIRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG-YNGIVHIMTTLID------MYARFGCV  238 (662)
Q Consensus       167 ~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~------~y~~~g~~  238 (662)
                      ..-....+.    .|. ...|.....+.--.++    ...|..+.+...+.. -.|+...+.-...      ...+.|.+
T Consensus       130 ~tr~~LLql----~~~~ra~w~~~Avs~~L~g~----y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~  201 (700)
T KOG1156|consen  130 ETRNQLLQL----RPSQRASWIGFAVAQHLLGE----YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL  201 (700)
T ss_pred             HHHHHHHHh----hhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence            555555443    222 2234444444444455    666666666665554 2344333332221      23345666


Q ss_pred             HHHHHHHHcCCCC--CHhH-HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHH-c-cCCHHHHHHHH
Q 006076          239 MYAGFVFSQMAVK--NVVS-WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA-A-LAALEQGKMIH  313 (662)
Q Consensus       239 ~~A~~~f~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~-~-~~~~~~a~~~~  313 (662)
                      ++|.+.....+..  |-.. --+...-+.+.++.++|..++..+  ...  .||..-|.-.+..+. . ....+....++
T Consensus       202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L--l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly  277 (700)
T KOG1156|consen  202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL--LER--NPDNLDYYEGLEKALGKIKDMLEALKALY  277 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH--Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6666655544322  2111 223344556667777777777666  332  366555555444433 1 22222222444


Q ss_pred             HHHHHhC---CCCchhHHHHHHHHHHhcCChHH-HHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHH----H
Q 006076          314 GYILRRG---LDSILPVVSALVTMYARCGKLEL-GQCVFDHMDKRD-VVSWNSLISSYGVHGYGGKAIQIFKEMI----Y  384 (662)
Q Consensus       314 ~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~  384 (662)
                      ....+.-   ..|-....+.+     ...++.+ ..+++..+.++. +..+..+.+-|-.-...+-..++.-.+.    .
T Consensus       278 ~~ls~~y~r~e~p~Rlplsvl-----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~  352 (700)
T KOG1156|consen  278 AILSEKYPRHECPRRLPLSVL-----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG  352 (700)
T ss_pred             HHHhhcCcccccchhccHHHh-----CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence            4333220   01110000000     0011111 111222222111 1222233332222111111111111111    1


Q ss_pred             cC----------CCCCHh--HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH
Q 006076          385 HG----------VSPSPI--SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEEAAKIIE  451 (662)
Q Consensus       385 ~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~  451 (662)
                      .|          -+|...  |+..+...+-+.|+++.|..+.+.....   .|+ ++.|..-...+...|.+++|..+++
T Consensus       353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~  429 (700)
T KOG1156|consen  353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLD  429 (700)
T ss_pred             ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            11          134432  3444566677788888888888877632   343 4566666677788888888888887


Q ss_pred             hcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hH--HHHHHHHHhcCChHHHHHHHHHHH
Q 006076          452 DLR-I-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG-------NY--VLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       452 ~m~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +.. + .||...-.--..-..+.++.++|..+..+.-..+-+-..       .|  ..=+.+|.+.|++.+|.+-|..+.
T Consensus       430 ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  430 EAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             HHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            763 1 344433323334445667778887777766554321000       11  123567778888888877666554


Q ss_pred             h
Q 006076          521 A  521 (662)
Q Consensus       521 ~  521 (662)
                      .
T Consensus       510 k  510 (700)
T KOG1156|consen  510 K  510 (700)
T ss_pred             H
Confidence            3

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.68  E-value=1.5e-06  Score=85.21  Aligned_cols=247  Identities=13%  Similarity=0.045  Sum_probs=139.1

Q ss_pred             HhcCCHHHHHHHHHc--CCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076          233 ARFGCVMYAGFVFSQ--MAV-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG  309 (662)
Q Consensus       233 ~~~g~~~~A~~~f~~--~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a  309 (662)
                      .-.|++..+..-.+.  ... .+.....-+.++|...|+++.++.   ++  .... .|.......+...+....+-+.+
T Consensus        12 fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei--~~~~-~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   12 FYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EI--KKSS-SPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS---TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hh--ccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence            335777777654441  111 123345556777888887765543   33  2222 55555554444444333333333


Q ss_pred             HHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076          310 KMIHGYILRRGLD-SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS  388 (662)
Q Consensus       310 ~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  388 (662)
                      ..-+...+..... .+..+......+|...|++++|.+++...  .+.......+..|.+.++++.|.+.++.|.+.  .
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~  161 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D  161 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence            3333222222222 23333334445666778888888877765  45556666778888888888888888888763  3


Q ss_pred             CCHhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHH
Q 006076          389 PSPISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVW  462 (662)
Q Consensus       389 p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~  462 (662)
                      .| .+...+..++..    ...+.+|..+|+++..+  ..+++.+.+.+..+....|++++|.+++.+. ...| ++.+.
T Consensus       162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            33 444445444332    23577788888887543  3567777777777777777777777777765 2233 45556


Q ss_pred             HHHHHHHHhcCCH-HHHHHHHHHHHhcCCCC
Q 006076          463 GSLLGSCRIHCNV-ELAERASKRLFELEPTN  492 (662)
Q Consensus       463 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~  492 (662)
                      ..++......|+. +.+.+...++....|+.
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            6666666666666 55666777777777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.68  E-value=3.6e-05  Score=79.42  Aligned_cols=294  Identities=8%  Similarity=-0.093  Sum_probs=161.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHcCC---CC--CH-hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-HHHHH
Q 006076          223 HIMTTLIDMYARFGCVMYAGFVFSQMA---VK--NV-VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-VTMVS  295 (662)
Q Consensus       223 ~~~~~li~~y~~~g~~~~A~~~f~~~~---~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~t~~~  295 (662)
                      ..+..+...|...|+.+.+.+.+....   .+  +. .........+...|++++|.+.+++.  ...  .|+. ..+..
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~--l~~--~P~~~~a~~~   82 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQL--LDD--YPRDLLALKL   82 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHH--CCCcHHHHHH
Confidence            344445555555566666544444332   11  11 11222233456677888888888776  322  2332 23221


Q ss_pred             HHHHHH----ccCCHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 006076          296 VLQACA----ALAALEQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYG  367 (662)
Q Consensus       296 ll~a~~----~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~  367 (662)
                       ...+.    ..+..+.+.+.+..  .....| .......+...+...|++++|...+++..+   .+...+..+...|.
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~  159 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE  159 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence             11122    23344444444433  111122 233444556677788888888888887653   34567777888888


Q ss_pred             hcCChHHHHHHHHHHHHcCC-CCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHhhcC
Q 006076          368 VHGYGGKAIQIFKEMIYHGV-SPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY-A--CMVDLLGRAN  441 (662)
Q Consensus       368 ~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g  441 (662)
                      ..|++++|..++++...... .|+.  ..|..+...+...|++++|..+++.........+..... +  .++.-+...|
T Consensus       160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  239 (355)
T cd05804         160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG  239 (355)
T ss_pred             HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence            88888888888888776421 1222  234456667788888888888888875322111212111 1  2233333344


Q ss_pred             CHHHHHHH---HHhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHh
Q 006076          442 KLEEAAKI---IEDL-RIEP---GPKVWGSLLGSCRIHCNVELAERASKRLFELE-P--------TNAGNYVLLADVYAA  505 (662)
Q Consensus       442 ~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~  505 (662)
                      ..+.+.++   .... +..|   ..........++...|+.+.|...++.+.... .        .........+.++.+
T Consensus       240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~  319 (355)
T cd05804         240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA  319 (355)
T ss_pred             CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence            32222222   1111 1001   11222345666778889999999988876522 1        123455567778889


Q ss_pred             cCChHHHHHHHHHHHhCC
Q 006076          506 ADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       506 ~g~~~~A~~~~~~m~~~~  523 (662)
                      .|++++|.+.+.......
T Consensus       320 ~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         320 EGNYATALELLGPVRDDL  337 (355)
T ss_pred             cCCHHHHHHHHHHHHHHH
Confidence            999999999998877543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.66  E-value=1.5e-05  Score=85.84  Aligned_cols=172  Identities=11%  Similarity=0.047  Sum_probs=111.9

Q ss_pred             HHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076          343 LGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK  419 (662)
Q Consensus       343 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  419 (662)
                      .|...+....   ..+...||+|.-. ...|++.-|...|-+-... .+.+..+|..+.-.|....+++.|...|...+.
T Consensus       801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS  878 (1238)
T KOG1127|consen  801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS  878 (1238)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence            4555555433   3677788877665 5567777777776655543 234557777777778888888888888887752


Q ss_pred             hcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHH----------H
Q 006076          420 EHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPGPKVWGSLLGSCRIHCNVELAER----------A  481 (662)
Q Consensus       420 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~  481 (662)
                         +.| +...|....-.....|+.-++..+|..-       +--|+...|-.-..-...+|+.++-..          .
T Consensus       879 ---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a  955 (1238)
T KOG1127|consen  879 ---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA  955 (1238)
T ss_pred             ---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence               444 4555655555556677777777777642       223566666555555556665554433          4


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL  519 (662)
Q Consensus       482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  519 (662)
                      .++.+.-.|++..+|.+.+...-..+.+++|.+.....
T Consensus       956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            44555667888888888888888888777777666543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=0.00022  Score=69.82  Aligned_cols=384  Identities=13%  Similarity=0.046  Sum_probs=214.8

Q ss_pred             hHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHH-HhcC-CccHHHHHHHHHhhCCCCCCCChhhHHHHHHHH
Q 006076          116 FLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL-TLAG-RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC  193 (662)
Q Consensus       116 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~-~~~g-~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~  193 (662)
                      ..-...+..|...++-+.|.....+++..-..--+.|+.+. -+.| +-.++.--+.+....   . |  ... ..|.+.
T Consensus        98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre---c-p--~aL-~~i~~l  170 (564)
T KOG1174|consen   98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE---C-P--MAL-QVIEAL  170 (564)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh---c-c--hHH-HHHHHH
Confidence            34445667777778888888888888775443334444333 3322 222332233333222   0 0  001 111111


Q ss_pred             HhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHcCC-----CCCHhHHHHHHHHHHHc
Q 006076          194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF--GCVMYAGFVFSQMA-----VKNVVSWSAMIACYARN  266 (662)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~  266 (662)
                      ...+     +..+...--.|-...++|...+...-+.+|+.+  ++...|...|-...     ..|+.....+...+...
T Consensus       171 l~l~-----v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~  245 (564)
T KOG1174|consen  171 LELG-----VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN  245 (564)
T ss_pred             HHHh-----hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence            1111     111111111222223344433444445555544  44444444443222     23677778888888888


Q ss_pred             CChhHHHHHHHHHhhhhCCCcCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 006076          267 GMAFEALELFREMIMESHDLCPNSVTMVSV-LQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ  345 (662)
Q Consensus       267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  345 (662)
                      |+.++|+..|++.  +  -+.|+..+-.-+ .-.+.+.|+.+....+...+.... +-+...|-.-........+++.|.
T Consensus       246 Gdn~~a~~~Fe~~--~--~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL  320 (564)
T KOG1174|consen  246 GDYFQAEDIFSST--L--CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERAL  320 (564)
T ss_pred             cCchHHHHHHHHH--h--hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHH
Confidence            8888888888866  3  233443321111 111345667766666666554332 011111222222334456777777


Q ss_pred             HHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc
Q 006076          346 CVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEH  421 (662)
Q Consensus       346 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  421 (662)
                      .+-++-.+   +++..|-.=...+.+.|+.++|.-.|+..+.  +.| +...|..|+.+|...|.+.+|.-.-+...+. 
T Consensus       321 ~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-  397 (564)
T KOG1174|consen  321 NFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-  397 (564)
T ss_pred             HHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-
Confidence            77665543   3444554444567777888888888887776  454 4578888888888888888887766666543 


Q ss_pred             CCCCChHHHHHHH-HHHhh-cCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076          422 MIRPSVEHYACMV-DLLGR-ANKLEEAAKIIEDL-RIEPGP-KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV  497 (662)
Q Consensus       422 ~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  497 (662)
                       ++.+..+.+.+. ..+.- ..--++|..++++. .+.|+- ...+.+...|...|..+.+..++++.+...|+ ...++
T Consensus       398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~  475 (564)
T KOG1174|consen  398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHN  475 (564)
T ss_pred             -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHH
Confidence             344555544442 22222 22336677777765 566753 44566667788888888888888888888776 46778


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 006076          498 LLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .|++.+.....+.+|...|.....
T Consensus       476 ~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  476 HLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHh
Confidence            888888888888888888776553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.65  E-value=7.9e-07  Score=87.19  Aligned_cols=244  Identities=13%  Similarity=0.041  Sum_probs=160.4

Q ss_pred             HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 006076          262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL  341 (662)
Q Consensus       262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  341 (662)
                      -+.-.|.+..++.-.. .  ....-..+..+...+.+++..+|..+.+   ...+.+.. .|.......+...+...++-
T Consensus        10 n~fy~G~Y~~~i~e~~-~--~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-L--KSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-C--HTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHhhhHHHHHHHhh-c--cCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccch
Confidence            3445688888876554 2  2222222344555667778888876643   23333333 56655555554444333455


Q ss_pred             HHHHHHHhhCC-CC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 006076          342 ELGQCVFDHMD-KR----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES  416 (662)
Q Consensus       342 ~~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  416 (662)
                      +.+..-+++.. ++    +....-.....|...|++++|++++.+-      .+.......+..+.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56666555443 32    2222222234466689999999988642      3556667788899999999999999999


Q ss_pred             hHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          417 MRKEHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       417 ~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      |.+   +..|...   ..+.+..+.-.+.+++|..+|+++  ...+++.+.+.+..++...|++++|+.+++++++.+|.
T Consensus       157 ~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  157 MQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             HHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            963   3444322   233344443345799999999999  34578889999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 006076          492 NAGNYVLLADVYAAADMW-DEVKRVKRLLEA  521 (662)
Q Consensus       492 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~  521 (662)
                      ++.+...++-+....|+. +.+.+.+.+++.
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            999999999999999988 667788888775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.65  E-value=5.4e-05  Score=72.08  Aligned_cols=188  Identities=11%  Similarity=0.079  Sum_probs=103.6

Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHH
Q 006076          299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKA  375 (662)
Q Consensus       299 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A  375 (662)
                      .+...|+...+......+++.. +.|...+..-..+|...|++..|+.=+....   ..+..+.--+-..+...|+.+.+
T Consensus       164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s  242 (504)
T KOG0624|consen  164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS  242 (504)
T ss_pred             HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence            3444566666666666666543 3456666666777777777777765554433   45555666666677777888888


Q ss_pred             HHHHHHHHHcCCCCCHhH-HH---HH---------HHHHhcCCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 006076          376 IQIFKEMIYHGVSPSPIS-FV---SV---------LGACSHAGLVEEGKMLFESMRKEHMIRPS-----VEHYACMVDLL  437 (662)
Q Consensus       376 ~~~~~~m~~~g~~p~~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~  437 (662)
                      +...++-++  +.||... |.   .|         .......+.+.++.+-.+...+.   .|.     ...+..+-..+
T Consensus       243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~  317 (504)
T KOG0624|consen  243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY  317 (504)
T ss_pred             HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence            877777776  5676532 11   10         01112234444444444444321   222     12233333444


Q ss_pred             hhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          438 GRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       438 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      ...|++.+|++...+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+|+|
T Consensus       318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            5555666666555544 34443 4455555555555556666666666666666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.61  E-value=2e-05  Score=71.14  Aligned_cols=132  Identities=13%  Similarity=0.030  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      ..|....-+|.+|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+..  +........+...
T Consensus       105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~  182 (250)
T COG3063         105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARL  182 (250)
T ss_pred             hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHH
Confidence            33333334444444444444444444321111 12344444444444455555555554444211  1123344444444


Q ss_pred             HhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          437 LGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      ..+.|++-.|..+++..  ...++..+.-..|..-...||.+.+.+.-.++...-|.
T Consensus       183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~  239 (250)
T COG3063         183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY  239 (250)
T ss_pred             HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            55555555555554444  12234444333444444455555555554455555454

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=0.00038  Score=71.35  Aligned_cols=428  Identities=13%  Similarity=0.093  Sum_probs=218.9

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCC--CCCHhhHHHHHHHH--hcCCChHHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEP--NPTQHTYELLLLSC--THHNSLSDALNV  102 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~p~~~~~~~ll~~~--~~~~~~~~a~~~  102 (662)
                      .+++|.+.- +.+....+-.-+.  ...-+-++++.+++++|+.+.+...  ..+..-+  +=++|  .+.+..++|...
T Consensus        27 e~e~a~k~~-~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~--fEKAYc~Yrlnk~Dealk~  101 (652)
T KOG2376|consen   27 EYEEAVKTA-NKILSIVPDDEDA--IRCKVVALIQLDKYEDALKLIKKNGALLVINSFF--FEKAYCEYRLNKLDEALKT  101 (652)
T ss_pred             HHHHHHHHH-HHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh--HHHHHHHHHcccHHHHHHH
Confidence            666777766 6665443222222  4446667888889999987776211  1111111  22333  367788888777


Q ss_pred             HHHHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC
Q 006076          103 HSHLTDNGFDQDPF-LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS  181 (662)
Q Consensus       103 ~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p  181 (662)
                      +.     |.+++.. +...-...+-+.|++++|..+++.+.+.+...+...+.+-+-.--.....+   .|...  ...|
T Consensus       102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~q~v--~~v~  171 (652)
T KOG2376|consen  102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LLQSV--PEVP  171 (652)
T ss_pred             Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HHHhc--cCCC
Confidence            76     3333332 444445566688889999999888866655555444433221111111111   22222  2334


Q ss_pred             ChhhHHHHHHH---HHhCCCCccchHHHHHHHHHHHHhCCC-------C--ch-----hHHHHHHHHHHhcCCHHHHHHH
Q 006076          182 DRFTYTYVLKA---CVASSCGFSLLKHGKEIHASVLRHGYN-------G--IV-----HIMTTLIDMYARFGCVMYAGFV  244 (662)
Q Consensus       182 ~~~t~~~ll~~---~~~~~~~~~~~~~a~~~~~~~~~~g~~-------~--~~-----~~~~~li~~y~~~g~~~~A~~~  244 (662)
                       ..||..+.+.   +...+.    +..|.+++....+.+.+       .  +.     .+---|.-.+...|+-++|..+
T Consensus       172 -e~syel~yN~Ac~~i~~gk----y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i  246 (652)
T KOG2376|consen  172 -EDSYELLYNTACILIENGK----YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI  246 (652)
T ss_pred             -cchHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence             2345444432   234455    88888888877443210       0  11     1112344456678999999998


Q ss_pred             HHcCCCC---CH----hHHHHHHHHHHHcCChh-HHHHHHHHHhhhhCCC----------cCCHHHHH-HHHHHHHccCC
Q 006076          245 FSQMAVK---NV----VSWSAMIACYARNGMAF-EALELFREMIMESHDL----------CPNSVTMV-SVLQACAALAA  305 (662)
Q Consensus       245 f~~~~~~---~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~----------~p~~~t~~-~ll~a~~~~~~  305 (662)
                      +......   |.    +.-|.++..-....-++ .++..++..  .....          +-..+..+ .++..+.  +.
T Consensus       247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~--~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk  322 (652)
T KOG2376|consen  247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ--VFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK  322 (652)
T ss_pred             HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence            8877532   22    22333433221111122 222233222  00000          00011111 1111111  11


Q ss_pred             HHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhc-C-ChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHH
Q 006076          306 LEQGKMIHGYILRR-GLDSILPVVSALVTMYARC-G-KLELGQCVFDHMDK----RDVVSWNSLISSYGVHGYGGKAIQI  378 (662)
Q Consensus       306 ~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~-g-~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~  378 (662)
                      .+.++++   .... +..|. ..+..++....++ . ....|..++....+    ...+.--+++......|+++.|+++
T Consensus       323 ~~q~r~~---~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  323 MDQVREL---SASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             HHHHHHH---HHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            2222222   2222 11222 3333333333222 2 35566666655543    2344556667777788889888888


Q ss_pred             HH--------HHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC-CCChH----HHHHHHHHHhhcCCHHH
Q 006076          379 FK--------EMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI-RPSVE----HYACMVDLLGRANKLEE  445 (662)
Q Consensus       379 ~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~g~~~~  445 (662)
                      +.        ...+.+..|-.+  ..+..-+.+.++.+.|..++....+.+.. .+...    .+.-++..-.+.|+-++
T Consensus       399 l~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e  476 (652)
T KOG2376|consen  399 LSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE  476 (652)
T ss_pred             HHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence            88        555545555443  44555566666666666666655432211 12222    23333444457789999


Q ss_pred             HHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076          446 AAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRL  485 (662)
Q Consensus       446 A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  485 (662)
                      |..+++++ . .++|..+...++.+|+.. +.+.|+.+-+++
T Consensus       477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            99999888 3 456888888888888876 577777766554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=0.00041  Score=73.46  Aligned_cols=220  Identities=12%  Similarity=0.081  Sum_probs=132.0

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh------------c-CCCCCHhhHHHHHHHHhcC
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS------------I-EPNPTQHTYELLLLSCTHH   93 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------~-~~~p~~~~~~~ll~~~~~~   93 (662)
                      ++|.|.+.. ..+.+.  +.     |..|.+.+++..+++-|.-.+.            + ...|+ .+=..+.......
T Consensus       743 ~MD~AfksI-~~IkS~--~v-----W~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL  813 (1416)
T KOG3617|consen  743 SMDAAFKSI-QFIKSD--SV-----WDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL  813 (1416)
T ss_pred             cHHHHHHHH-HHHhhh--HH-----HHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence            889888888 555443  22     5669999999888887765553            1 11122 2222223334577


Q ss_pred             CChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCC-cchHHHHHHHHHhcCCccHHHHHHHHH
Q 006076           94 NSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT-IYVWNALFRALTLAGRGEEVLELYRRM  172 (662)
Q Consensus        94 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m  172 (662)
                      |.+++|+.++++-.+.         ..|=..|-..|.+++|.++-+.-.+-. ..+|..-..-+-..++.+.|++.|++-
T Consensus       814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence            8999999999988764         334566778899999998876433211 134555555555667788888887753


Q ss_pred             ----------hhCCCC-------CCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076          173 ----------NGTGTG-------IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF  235 (662)
Q Consensus       173 ----------~~~~~g-------~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  235 (662)
                                +...++       -..|...|...-..+-..|+    ++.|..++..+..         |-+++...|-.
T Consensus       885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Ge----mdaAl~~Y~~A~D---------~fs~VrI~C~q  951 (1416)
T KOG3617|consen  885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGE----MDAALSFYSSAKD---------YFSMVRIKCIQ  951 (1416)
T ss_pred             CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccc----hHHHHHHHHHhhh---------hhhheeeEeec
Confidence                      111000       00111222222222222333    5555554443331         33455555566


Q ss_pred             CCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076          236 GCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM  279 (662)
Q Consensus       236 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  279 (662)
                      |+.++|-++-++-  .|......+..-|-..|++.+|+.+|.+.
T Consensus       952 Gk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  952 GKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             cCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            7777777776653  35666777888888999999999998876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.4e-05  Score=79.06  Aligned_cols=216  Identities=13%  Similarity=0.082  Sum_probs=136.4

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChh----------HHHHHH
Q 006076          294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVV----------SWNSLI  363 (662)
Q Consensus       294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~----------~~~~li  363 (662)
                      ..+.++..+..+++.+.+-+...+...  .++.-++....+|...|.+.++...-+...+..-.          +...+.
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g  305 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG  305 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence            345555666667777777777776665  45666666777777777766665544433221111          122234


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCC
Q 006076          364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE-HYACMVDLLGRANK  442 (662)
Q Consensus       364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~  442 (662)
                      .+|...++++.|+..|.+.+.....||..+         +....+++....+...   -+.|... -...-...+.+.|+
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD  373 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence            466667788888888888666544444322         2223344444333332   1233321 11222566777888


Q ss_pred             HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +.+|...|.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|.-=+.++....+|+.|.+.|.+-.
T Consensus       374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877 3334 667788888888888888888888888888888887778777777777788888888887766


Q ss_pred             hCC
Q 006076          521 ARG  523 (662)
Q Consensus       521 ~~~  523 (662)
                      +.+
T Consensus       454 e~d  456 (539)
T KOG0548|consen  454 ELD  456 (539)
T ss_pred             hcC
Confidence            543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.56  E-value=1.3e-05  Score=89.08  Aligned_cols=200  Identities=12%  Similarity=0.096  Sum_probs=167.7

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076          322 DSILPVVSALVTMYARCGKLELGQCVFDHMDK--------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS  393 (662)
Q Consensus       322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  393 (662)
                      +.+...|-..|......+++++|++++++...        .-.-.|.++++.-...|.-+...++|+++.+.  .-....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            34466777788888899999999999988763        12347888888888888888899999999883  333467


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC---CHHHHHHHHHHH
Q 006076          394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP---GPKVWGSLLGSC  469 (662)
Q Consensus       394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~  469 (662)
                      |..|+..|.+.+..++|.++++.|.++++  .....|..+++.+.+...-+.|..++.+. ..-|   ......-.+..-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            88999999999999999999999998875  67889999999999999999999999876 2223   344455556666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ  525 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  525 (662)
                      .++|+.+++..+|+..+.-.|.-...|..++++=.+.|..+.++.+|++....++.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            78999999999999999999998899999999999999999999999999987763

>PF12854 PPR_1: PPR repeat

Probab=98.56  E-value=1e-07  Score=59.51  Aligned_cols=33  Identities=36%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 006076          217 GYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA  249 (662)
Q Consensus       217 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  249 (662)
                      |+.||..+||+||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            678888888888888888888888888888874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.56  E-value=0.00031  Score=72.41  Aligned_cols=91  Identities=14%  Similarity=0.067  Sum_probs=41.5

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC-CCch--hHHHHHHHH
Q 006076          258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL-DSIL--PVVSALVTM  334 (662)
Q Consensus       258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~  334 (662)
                      .+...+...|++++|.+.+++.  .... +.+...+..+..++...|++++|...++...+... .++.  ..+..+...
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~a--l~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRA--LELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH--HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            3344555566666666666555  2211 11233334444444555555555555554444321 1111  123344445


Q ss_pred             HHhcCChHHHHHHHhhC
Q 006076          335 YARCGKLELGQCVFDHM  351 (662)
Q Consensus       335 y~~~g~~~~A~~~~~~m  351 (662)
                      +...|++++|..+|++.
T Consensus       196 ~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         196 YLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            55555555555555544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.54  E-value=9e-06  Score=78.34  Aligned_cols=179  Identities=12%  Similarity=-0.010  Sum_probs=117.5

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----H
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-V---VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI----S  393 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t  393 (662)
                      ....+..+...|.+.|++++|...|+++.+  |+ .   .+|..+..+|...|++++|+..|+++.+.  .|+..    +
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence            455666677777788888888888876653  32 1   35666777788888888888888888773  34322    3


Q ss_pred             HHHHHHHHhcC--------CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 006076          394 FVSVLGACSHA--------GLVEEGKMLFESMRKEHMIRPSV-EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS  464 (662)
Q Consensus       394 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~  464 (662)
                      +..+..++...        |+.++|.+.++.+.+.+   |+. ..+..+....    ......           ......
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~  171 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMD----YLRNRL-----------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence            44444445443        56777777777776542   332 2222221110    000000           001124


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          465 LLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +...+...|+.++|...++++++..|++   +..+..++.+|.+.|++++|...++.+..+
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5566888999999999999999987764   468889999999999999999999988754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12854 PPR_1: PPR repeat

Probab=98.53  E-value=1.4e-07  Score=58.97  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=24.9

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006076          320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMD  352 (662)
Q Consensus       320 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~  352 (662)
                      |+.||..+||+||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            667777777777777777777777777777764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.52  E-value=0.00017  Score=84.52  Aligned_cols=296  Identities=9%  Similarity=-0.058  Sum_probs=190.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCC----CC----C--Hh--HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH---
Q 006076          226 TTLIDMYARFGCVMYAGFVFSQMA----VK----N--VV--SWSAMIACYARNGMAFEALELFREMIMESHDLCPNS---  290 (662)
Q Consensus       226 ~~li~~y~~~g~~~~A~~~f~~~~----~~----~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~---  290 (662)
                      ......+...|++++|...+....    ..    +  ..  ....+...+...|++++|...+++.  ...--..+.   
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~~  490 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELA--LAELPLTWYYSR  490 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HhcCCCccHHHH
Confidence            344555667899999888886542    11    1  11  1122334566889999999999887  332111121   


Q ss_pred             -HHHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C---
Q 006076          291 -VTMVSVLQACAALAALEQGKMIHGYILRRGL---DS--ILPVVSALVTMYARCGKLELGQCVFDHMDK-------R---  354 (662)
Q Consensus       291 -~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~---  354 (662)
                       ...+.+...+...|+++.|...+.......-   .+  .......+...+...|++++|...+++...       +   
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence             2334445556788999999999988865321   11  123455667788899999999998776532       1   


Q ss_pred             -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076          355 -DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GVSPS--PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH  429 (662)
Q Consensus       355 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (662)
                       ....+..+...+...|++++|...+.+....  ...+.  ..++..+.......|+.++|.+.++.......-......
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~  650 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD  650 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence             1223445566677789999999999887653  11222  234444556777899999999998887532111111111


Q ss_pred             H-----HHHHHHHhhcCCHHHHHHHHHhcCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCC
Q 006076          430 Y-----ACMVDLLGRANKLEEAAKIIEDLRIE--PGP----KVWGSLLGSCRIHCNVELAERASKRLFELE------PTN  492 (662)
Q Consensus       430 ~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~  492 (662)
                      +     ...+..+...|+.+.|..++......  ...    ..+..+..++...|+.++|...++++.+..      +..
T Consensus       651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~  730 (903)
T PRK04841        651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL  730 (903)
T ss_pred             HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence            1     11224456689999999998776311  111    113456677888899999999999987642      122


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          493 AGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ..++..++.+|.+.|+.++|...+.+..+..
T Consensus       731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            3467788899999999999999999887643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.50  E-value=1.3e-05  Score=74.16  Aligned_cols=147  Identities=9%  Similarity=0.064  Sum_probs=109.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076          363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK  442 (662)
Q Consensus       363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  442 (662)
                      +..|...|+++.+....+.+..    |. .       .+...++.+++...++...+..  +.+...|..|...|...|+
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence            3456777777665443322211    11 0       1223566677777777776543  5678889999999999999


Q ss_pred             HHHHHHHHHhc-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076          443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSC-RIHCN--VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                      +++|...|++. ...| +...+..+..++ ...|+  .++|..+++++++.+|+++.++..|+..+.+.|++++|...++
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999887 4455 667777777764 66676  5899999999999999999999999999999999999999999


Q ss_pred             HHHhCC
Q 006076          518 LLEARG  523 (662)
Q Consensus       518 ~m~~~~  523 (662)
                      ++.+..
T Consensus       169 ~aL~l~  174 (198)
T PRK10370        169 KVLDLN  174 (198)
T ss_pred             HHHhhC
Confidence            988643

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=0.00028  Score=66.11  Aligned_cols=124  Identities=12%  Similarity=0.040  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076          256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY  335 (662)
Q Consensus       256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  335 (662)
                      +|.-...+.+.|+++.|.+.+..|+ .+..-..|++|...+.-. -..+++..+.+-+..+...+. -...++..++-.|
T Consensus       244 fNLKaAIeyq~~n~eAA~eaLtDmP-PRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly  320 (459)
T KOG4340|consen  244 FNLKAAIEYQLRNYEAAQEALTDMP-PRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY  320 (459)
T ss_pred             hhhhhhhhhhcccHHHHHHHhhcCC-CcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence            4444455678889999999998886 333445677887654322 123345555555555655543 3456777788889


Q ss_pred             HhcCChHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          336 ARCGKLELGQCVFDHMDKR-----DVVSWNSLISSYGVHGYGGKAIQIFKEM  382 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m  382 (662)
                      ||..-++.|.+++.+-..-     +...|+.+=..-...-..++|++-+..+
T Consensus       321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  321 CKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             hhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999998888765532     3333443222222233455555544443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.45  E-value=0.00035  Score=81.87  Aligned_cols=325  Identities=10%  Similarity=0.030  Sum_probs=186.5

Q ss_pred             hhcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCC----CCChh--hHHHHHHHHH
Q 006076          125 YSHFDSVDDARHVFDKTRR----RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI----RSDRF--TYTYVLKACV  194 (662)
Q Consensus       125 y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~----~p~~~--t~~~ll~~~~  194 (662)
                      ....|+++.+...++.++.    .+..........+...|++++|..++......-...    .|...  .....-..+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            4456677777777776642    122222333344456678888887777664320000    11112  1222223344


Q ss_pred             hCCCCccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHcCCC-------CC--HhHHHHHHH
Q 006076          195 ASSCGFSLLKHGKEIHASVLRHGYNGI----VHIMTTLIDMYARFGCVMYAGFVFSQMAV-------KN--VVSWSAMIA  261 (662)
Q Consensus       195 ~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~~--~~~~~~li~  261 (662)
                      ..++    ++.+...+....+.--..+    ....+.+...+...|++++|...+++...       +.  ..+++.+..
T Consensus       464 ~~g~----~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        464 NDGD----PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             hCCC----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            5677    8888887777765311111    24666777777888888888887776531       11  234455566


Q ss_pred             HHHHcCChhHHHHHHHHHhhh--hCCCc--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCC--chhHHHHHH
Q 006076          262 CYARNGMAFEALELFREMIME--SHDLC--P-NSVTMVSVLQACAALAALEQGKMIHGYILRRG--LDS--ILPVVSALV  332 (662)
Q Consensus       262 ~~~~~g~~~~A~~~~~~m~~~--~~~~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~--~~~~~~~li  332 (662)
                      .+...|++++|...+.+....  ..+..  | ....+..+...+...|++++|...+.......  ..+  ....+..+.
T Consensus       540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  619 (903)
T PRK04841        540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA  619 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence            677788888888877765311  11211  1 22334444555666788888888877765431  111  233444566


Q ss_pred             HHHHhcCChHHHHHHHhhCCC----C-ChhHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---hHHHHHHH
Q 006076          333 TMYARCGKLELGQCVFDHMDK----R-DVVSWN-----SLISSYGVHGYGGKAIQIFKEMIYHGVSPSP---ISFVSVLG  399 (662)
Q Consensus       333 ~~y~~~g~~~~A~~~~~~m~~----~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~  399 (662)
                      ..+...|+.+.|...+++...    . ....|.     ..+..+...|+.+.|...+............   .....+..
T Consensus       620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~  699 (903)
T PRK04841        620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR  699 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence            677788888888877766531    1 111111     1224445578888888887665432111111   11345566


Q ss_pred             HHhcCCCHHHHHHHHHHhHHh---cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          400 ACSHAGLVEEGKMLFESMRKE---HMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      ++...|+.++|...++.....   .|..+ ...+...+..+|.+.|+.++|...+.+.
T Consensus       700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777888888888888876532   22222 2345667778888889988888888776

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.44  E-value=7.8e-06  Score=71.55  Aligned_cols=122  Identities=11%  Similarity=0.033  Sum_probs=83.7

Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC
Q 006076          377 QIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI  455 (662)
Q Consensus       377 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  455 (662)
                      .+|++..+  +.|+.  +.....++...|++++|...|+......  +.+...|..+..++.+.|++++|...|++. ..
T Consensus        14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34455444  34543  4445566677788888888777776432  346677777777788888888888887776 33


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076          456 EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       456 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  504 (662)
                      .| +...|..+..++...|+.++|...+++++++.|+++..+.....+..
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            33 66777777777788888888888888888888887777766655543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.42  E-value=6.7e-06  Score=70.71  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=100.0

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      +....-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+|+.++..++.+|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4556667777888999999999999987 3455 6677899999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHH
Q 006076          504 AAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK  567 (662)
Q Consensus       504 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~  567 (662)
                      ...|+.+.|.+.|+.....          .             ..+|+..++.+++......+.
T Consensus       114 L~lG~~~~A~~aF~~Ai~~----------~-------------~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRI----------C-------------GEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHH----------h-------------ccChhHHHHHHHHHHHHHHhh
Confidence            9999999999999987742          1             246777777777777666554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.41  E-value=0.00029  Score=76.29  Aligned_cols=379  Identities=14%  Similarity=0.011  Sum_probs=214.7

Q ss_pred             hHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHH
Q 006076          116 FLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA  192 (662)
Q Consensus       116 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~  192 (662)
                      ..|..|...|...-+...|.+.|++..+   .|..+|.++...|++...++.|..+.-..-+.   -+.-...++.+-.+
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk---a~a~~~k~nW~~rG  569 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK---APAFACKENWVQRG  569 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh---chHHHHHhhhhhcc
Confidence            4688888888888888899999986554   46678999999999999999999883332221   11111222322222


Q ss_pred             --HHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHH---HHHHHHHcC
Q 006076          193 --CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA---MIACYARNG  267 (662)
Q Consensus       193 --~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g  267 (662)
                        +...++    ...+..-++..++.. +.|...|..|..+|.++|++..|.++|++...-++.+|-.   ....-+..|
T Consensus       570 ~yyLea~n----~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  570 PYYLEAHN----LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             ccccCccc----hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence              222233    566666666666554 5678899999999999999999999998876544333322   222346688


Q ss_pred             ChhHHHHHHHHHhhhhC----CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHH-------HHhCCCCchhHHHHHHHHHH
Q 006076          268 MAFEALELFREMIMESH----DLCPNSVTMVSVLQACAALAALEQGKMIHGYI-------LRRGLDSILPVVSALVTMYA  336 (662)
Q Consensus       268 ~~~~A~~~~~~m~~~~~----~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-------~~~g~~~~~~~~~~li~~y~  336 (662)
                      .+.+|+..+........    +..--..++..+...+...|-...+..+++..       .......+...|-.+     
T Consensus       645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a-----  719 (1238)
T KOG1127|consen  645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA-----  719 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----
Confidence            89999888876641111    11112233333333333333333333333332       222222222222222     


Q ss_pred             hcCChHHHHHHHhhCCCCChh--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----
Q 006076          337 RCGKLELGQCVFDHMDKRDVV--SWNSLISS-YGVHGYG---G---KAIQIFKEMIYHGVSPSPISFVSVLGACSH----  403 (662)
Q Consensus       337 ~~g~~~~A~~~~~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----  403 (662)
                           .+|..+|-... ||.+  .+..++.. +-..+..   +   -+.+.+-.-++  +..+..+|..+...+.+    
T Consensus       720 -----sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~  791 (1238)
T KOG1127|consen  720 -----SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL  791 (1238)
T ss_pred             -----hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence                 23334454444 4422  11111111 1111111   1   11111211111  12223344333332221    


Q ss_pred             CC----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHH
Q 006076          404 AG----LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       404 ~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~  477 (662)
                      .|    +...|...+...++..  ..+...|+.|.-+ ...|.+.-|..-|-+-  ..+....+|..+.-.|....+++-
T Consensus       792 l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~  868 (1238)
T KOG1127|consen  792 LGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH  868 (1238)
T ss_pred             cCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence            22    2235666666555321  2234455555444 6667777777766554  223467788888888888899999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      |...+.+...++|.|...+.-...+-...|+.-++..+|..
T Consensus       869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            99999999999998887777766666777888888777765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=0.00075  Score=71.59  Aligned_cols=359  Identities=13%  Similarity=0.072  Sum_probs=215.4

Q ss_pred             CChhHHHHHH--HHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCC--------CCC
Q 006076          113 QDPFLVTKLI--NVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGI--------RSD  182 (662)
Q Consensus       113 ~~~~~~~~li--~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~--------~p~  182 (662)
                      -|..+..+++  +.|..-|++|.|.+-.+-+.  +-..|..|.+.+.+..+.+-|.-.+-.|.... |.        .|+
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR-gaRAlR~a~q~~~  800 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR-GARALRRAQQNGE  800 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh-hHHHHHHHHhCCc
Confidence            4666777776  45677899999888776664  44679999999999888888877777765321 11        122


Q ss_pred             h-hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CHhHHHHHH
Q 006076          183 R-FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMI  260 (662)
Q Consensus       183 ~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li  260 (662)
                      . ..-.++|  ...+|-    +++|+.++.+..+..         .|=..|...|.+++|.++-+.-..- =..||..-.
T Consensus       801 e~eakvAvL--AieLgM----lEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA  865 (1416)
T KOG3617|consen  801 EDEAKVAVL--AIELGM----LEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA  865 (1416)
T ss_pred             chhhHHHHH--HHHHhh----HHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence            1 1112222  223444    999999999887764         3445678889999998886543211 123455555


Q ss_pred             HHHHHcCChhHHHHHHHHHhh--------hhC---------CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 006076          261 ACYARNGMAFEALELFREMIM--------ESH---------DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS  323 (662)
Q Consensus       261 ~~~~~~g~~~~A~~~~~~m~~--------~~~---------~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~  323 (662)
                      .-+-..++.+.|++.|++...        ..+         .-.-|...|.....-.-..|+.+.|..++..+.+     
T Consensus       866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----  940 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----  940 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence            555566778888888775410        000         0012333344444445566777777777665543     


Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH  403 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  403 (662)
                          |-+++...+-.|+.++|.++-++-  .|......+..-|-..|++.+|..+|.+.+.         |...|+.|-.
T Consensus       941 ----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen  941 ----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred             ----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence                344566666678888887776643  4556666788889999999999999887654         2233333222


Q ss_pred             ---------------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhcC----------C--
Q 006076          404 ---------------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLR----------I--  455 (662)
Q Consensus       404 ---------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----------~--  455 (662)
                                     ..+.-.|-.+|++.    |.     -...-+..|-++|.+.+|+++- +.-.          +  
T Consensus      1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~----g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEEL----GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred             cCHHHHHHHHHhhcCchhHHHHHHHHHHc----ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence                           22333444455433    11     1123456678888888888762 2111          1  


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------h-cCCCC---------cchHHHHHHHHH
Q 006076          456 EPGPKVWGSLLGSCRIHCNVELAERASKRLF---------------------E-LEPTN---------AGNYVLLADVYA  504 (662)
Q Consensus       456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------------~-~~p~~---------~~~~~~l~~~~~  504 (662)
                      ..|+...+--..-+..+.++++|..++-...                     + +-|..         ......+++.+.
T Consensus      1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred             CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence            2355555555555566667777665543221                     1 11211         125667899999


Q ss_pred             hcCChHHHHHHHHH
Q 006076          505 AADMWDEVKRVKRL  518 (662)
Q Consensus       505 ~~g~~~~A~~~~~~  518 (662)
                      ++|.+..|.+-|.+
T Consensus      1157 qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQ 1170 (1416)
T ss_pred             hccchHHHHHHHhh
Confidence            99998888776543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=0.00081  Score=68.37  Aligned_cols=234  Identities=13%  Similarity=0.059  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHhCCCC--c----hhHH
Q 006076          256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV-SVLQACAALAALEQGKMIHGYILRRGLDS--I----LPVV  328 (662)
Q Consensus       256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~  328 (662)
                      .-.+..+.-+..+++.|++-+...  ..  +. ...||. ..-.++...|...+....-...++.|.+.  +    ....
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a--~e--l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~  301 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKA--LE--LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL  301 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHH--Hh--Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence            445666666677777888777765  22  22 333443 34445666776666665555555544221  0    0111


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCC
Q 006076          329 SALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAG  405 (662)
Q Consensus       329 ~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g  405 (662)
                      ..+..+|.+.++++.|...|.+...  ++..       ...+....++++.......-  +.|... -...=.+.+.+.|
T Consensus       302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g  372 (539)
T KOG0548|consen  302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG  372 (539)
T ss_pred             HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence            2244478888999999999987542  2211       12233445566666555544  344431 1222356778899


Q ss_pred             CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006076          406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASK  483 (662)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~  483 (662)
                      ++..|...+.++++..  +-|...|..-.-+|.+.|.+.+|+.=-+.. ...|+ ...|.-=..++....+++.|...|.
T Consensus       373 dy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~  450 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ  450 (539)
T ss_pred             CHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998653  557889999999999999999998766554 33444 3445555556666678999999999


Q ss_pred             HHHhcCCCCcchHHHHHHHHHh
Q 006076          484 RLFELEPTNAGNYVLLADVYAA  505 (662)
Q Consensus       484 ~~~~~~p~~~~~~~~l~~~~~~  505 (662)
                      +.++.+|++......+.+++..
T Consensus       451 eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  451 EALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHhcCchhHHHHHHHHHHHHH
Confidence            9999999987666655555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=9.6e-05  Score=69.08  Aligned_cols=302  Identities=15%  Similarity=0.142  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCHhHHHH-HHH
Q 006076          185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--KNVVSWSA-MIA  261 (662)
Q Consensus       185 t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~  261 (662)
                      -+.+++..+.+...    +..+.+++....+.. +.+....+.|...|-...++..|-..++++..  |...-|.. -..
T Consensus        12 eftaviy~lI~d~r----y~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   12 EFTAVVYRLIRDAR----YADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQ   86 (459)
T ss_pred             chHHHHHHHHHHhh----HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            34555555555555    777777776655553 33455566677777777888888888877643  22222221 123


Q ss_pred             HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076          262 CYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQAC--AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG  339 (662)
Q Consensus       262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  339 (662)
                      .+-+.+.+.+|+++...|  ...   |+...-..-+.+.  .+.+++..++.+.++....|   +..+.+...-...+.|
T Consensus        87 SLY~A~i~ADALrV~~~~--~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   87 SLYKACIYADALRVAFLL--LDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG  158 (459)
T ss_pred             HHHHhcccHHHHHHHHHh--cCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence            455677778888887777  221   2222211112221  23344545554444432211   2222333333344566


Q ss_pred             ChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHH----
Q 006076          340 KLELGQCVFDHMDK----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK----  411 (662)
Q Consensus       340 ~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~----  411 (662)
                      +.+.|.+-|+...+    .....||.-+.-| +.|+.+.|+++..+..+.|++-.+.. +        .|...++.    
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDvrs  228 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDVRS  228 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCchhc
Confidence            66666666665543    2344555444333 34556666666666666554421110 0        00000000    


Q ss_pred             -----HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076          412 -----MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR----IEPGPKVWGSLLGSCRIHCNVELAERAS  482 (662)
Q Consensus       412 -----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~  482 (662)
                           .+....        -+..+|.-...+.+.|+++.|.+-+..||    .+.|++|...+.-. -..+++..+.+-+
T Consensus       229 vgNt~~lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KL  299 (459)
T KOG4340|consen  229 VGNTLVLHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKL  299 (459)
T ss_pred             ccchHHHHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHH
Confidence                 000000        02233334445678899999999999995    34577887655432 2346677777788


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          483 KRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       483 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      .-+++++|-.+.++..+.-+|++..-++-|..++-+
T Consensus       300 qFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  300 QFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            888899987788999999999999999999888754

>PLN02789 farnesyltranstransferase

Probab=98.35  E-value=0.00016  Score=71.93  Aligned_cols=176  Identities=11%  Similarity=0.052  Sum_probs=103.4

Q ss_pred             hHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          341 LELGQCVFDHMDK---RDVVSWNSLISSYGVHGYG--GKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       341 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      ++++...++++.+   .+..+|+.....+.+.|+.  ++++.+++++.+.  .| |..+|....-++.+.|+++++++.+
T Consensus        88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~  165 (320)
T PLN02789         88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC  165 (320)
T ss_pred             HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4555555544432   2334455444344444432  4556666666653  33 3455655555666666666666666


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHH
Q 006076          415 ESMRKEHMIRPSVEHYACMVDLLGRA---NK----LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH----CNVELAERA  481 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~  481 (662)
                      +.+.+..  +.+...|+.....+.+.   |.    .++++++..++ ...| |...|+-+...+...    ++..+|...
T Consensus       166 ~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~  243 (320)
T PLN02789        166 HQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV  243 (320)
T ss_pred             HHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence            6666432  23444555544444333   22    23555555333 4444 667788888887763    344668888


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 006076          482 SKRLFELEPTNAGNYVLLADVYAAAD------------------MWDEVKRVKRLLE  520 (662)
Q Consensus       482 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~  520 (662)
                      +.++...+|.++.+...|+++|+...                  ..++|.++++.+.
T Consensus       244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            88888888988888889999998632                  2356777777773

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.34  E-value=0.00022  Score=71.71  Aligned_cols=177  Identities=16%  Similarity=0.071  Sum_probs=125.8

Q ss_pred             CChHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 006076          339 GKLELGQCVFDHMDK------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM  412 (662)
Q Consensus       339 g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  412 (662)
                      .++.+++..-++++.      |+...+...+.+.........+-.++.+-.+.  .-...-|..-+ .....|.+++|+.
T Consensus       251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~  327 (484)
T COG4783         251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALK  327 (484)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHH
Confidence            356666666677763      45556666666544433333333333222221  11122333333 4456788999999


Q ss_pred             HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076          413 LFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEP  490 (662)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  490 (662)
                      .++.+.+.  .+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-++..++.+.|+..+|...++.....+|
T Consensus       328 ~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         328 LLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            99998764  3567778888889999999999999999887 45665 67788888999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          491 TNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +|+..|..|+.+|...|+..+|...+.++-
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            999999999999999998888888776655

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.29  E-value=0.00012  Score=67.82  Aligned_cols=155  Identities=9%  Similarity=0.118  Sum_probs=114.4

Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 006076          332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGK  411 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  411 (662)
                      +-.|.+.|+++.+....+.+..|.        ..|...++.++++..+++..... +.|...|..+...+...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456778888777655544433221        01223566778888888877742 445677888888999999999999


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHH-hhcCC--HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076          412 MLFESMRKEHMIRPSVEHYACMVDLL-GRANK--LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLF  486 (662)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  486 (662)
                      ..|+...+..  +.+...+..+..++ .+.|+  .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus        94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999887532  34678888888864 67777  59999999988 4455 66778888889999999999999999999


Q ss_pred             hcCCCCcchHH
Q 006076          487 ELEPTNAGNYV  497 (662)
Q Consensus       487 ~~~p~~~~~~~  497 (662)
                      ++.|.+..-+.
T Consensus       172 ~l~~~~~~r~~  182 (198)
T PRK10370        172 DLNSPRVNRTQ  182 (198)
T ss_pred             hhCCCCccHHH
Confidence            99887655443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.28  E-value=1.3e-05  Score=70.07  Aligned_cols=107  Identities=7%  Similarity=-0.061  Sum_probs=91.4

Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076          412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE  489 (662)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  489 (662)
                      .+++...+   +.|+  .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus        14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34554442   3444  4667788899999999999999987 4444 77889999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          490 PTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       490 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      |+++..+..++.++...|++++|...++......
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999887643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.27  E-value=5.3e-05  Score=79.36  Aligned_cols=209  Identities=11%  Similarity=0.001  Sum_probs=133.6

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChH
Q 006076          296 VLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGG  373 (662)
Q Consensus       296 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~  373 (662)
                      +...+.+.|-...|..+++.+         ..+...|.+|...|+..+|..+..+-.  +||...|..+.+......-++
T Consensus       404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE  474 (777)
T KOG1128|consen  404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE  474 (777)
T ss_pred             HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence            334445555566666665543         234456666666666666666555433  355666666666665555666


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      +|.++++.-...       .-..+.....+.++++++.+.|+.-.+.+  +-...+|-.+.-+..++++++.|.+.|...
T Consensus       475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            666666543221       11111111223567777777776655433  224566777777777888888888888765


Q ss_pred             -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          454 -RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       454 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                       ...|| ...||++-.+|.+.++..+|...++++++.+-++...+....-...+.|.|++|.+.+..+.+.
T Consensus       546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence             45664 4668888888888888888888888888877666666666666677888888888888877653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=4.9e-05  Score=79.57  Aligned_cols=190  Identities=20%  Similarity=0.218  Sum_probs=159.7

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076          320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG  399 (662)
Q Consensus       320 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  399 (662)
                      +++|-...-..+...+.++|-...|..+|+++     ..|.-.|.+|...|+..+|..+..+-.+  -+||+.-|..+..
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence            34555667778899999999999999999976     6788899999999999999999988877  4889999999999


Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  477 (662)
                      ..-...-+++|.++++....+        .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            888888899999999876532        1112222334478999999998854 4455 56789888888899999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      |...|.+...++|++...++.+..+|.+.|+-.+|...+++..+-+.
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999887663

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.24  E-value=8.2e-05  Score=68.80  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=92.3

Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHH
Q 006076          388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSL  465 (662)
Q Consensus       388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l  465 (662)
                      .|+......+-.++...|+-+....+.......  -+.|......++....+.|++.+|...+++.  +-+||...|+.+
T Consensus        63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             CcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            444333344555666667777777666665422  2345556666777777788888888777776  334577777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      .-+|.+.|++++|...+.+++++.|.++..++.|+-.|.-.|+.+.|..++......
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            777888888888888888888888877777788877777788888887777766543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.24  E-value=8.9e-05  Score=71.40  Aligned_cols=182  Identities=11%  Similarity=-0.010  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hh---HH
Q 006076          288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-S-ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-VV---SW  359 (662)
Q Consensus       288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~---~~  359 (662)
                      .....+......+...|+++.|...++.+++.... | ....+..+...|.+.|++++|...|+++.+  |+ ..   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            34566777778889999999999999999876432 1 124667889999999999999999998863  32 22   45


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHH
Q 006076          360 NSLISSYGVH--------GYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHY  430 (662)
Q Consensus       360 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  430 (662)
                      ..+..++.+.        |+.++|.+.|+++...  .|+.. ....+.....    .      ....         ....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~---------~~~~  169 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL---------AGKE  169 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH---------HHHH
Confidence            5566666654        7889999999999884  45542 2211111100    0      0000         0112


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076          431 ACMVDLLGRANKLEEAAKIIEDL----RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP  490 (662)
Q Consensus       431 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  490 (662)
                      ..+...|.+.|++++|...+++.    +-.| ....|..+..++...|+.++|...++.+....|
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            35667788999999999888876    2223 356788899999999999999998888776555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.23  E-value=0.00045  Score=77.46  Aligned_cols=224  Identities=14%  Similarity=0.160  Sum_probs=173.6

Q ss_pred             hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHh-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-C-HhHH
Q 006076          183 RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRH-GYN---GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-N-VVSW  256 (662)
Q Consensus       183 ~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~  256 (662)
                      +..|..-+......++    ++.|+++.+++++. ++.   --..+|.+++++-..-|.-+...++|++..+- | ...|
T Consensus      1458 Si~WI~YMaf~LelsE----iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSE----IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred             chHHHHHHHHHhhhhh----hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence            4456666666667777    88899888888764 221   12467888888888888888899999988643 3 4568


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 006076          257 SAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-SILPVVSALVTMY  335 (662)
Q Consensus       257 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y  335 (662)
                      ..|...|.+.+..++|.++|+.|. +.-+  -....|...+..+.+...-+.|..++.++.+.-.. ..+......+.+-
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~-KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLML-KKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHH-HHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            889999999999999999999995 3333  45667888888888999999999999998876322 2466777788888


Q ss_pred             HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHH
Q 006076          336 ARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEG  410 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a  410 (662)
                      .++|+.+.++.+|+....   +-...|+..|..-.++|+.+.+..+|++....++.|-.  ..|.-.|..-.+.|+-+.+
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            999999999999998874   35678999999999999999999999999999888865  4566666555555654444


Q ss_pred             HHH
Q 006076          411 KML  413 (662)
Q Consensus       411 ~~~  413 (662)
                      ..+
T Consensus      1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred             HHH
Confidence            333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.23  E-value=0.00011  Score=80.56  Aligned_cols=140  Identities=11%  Similarity=0.040  Sum_probs=112.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076          354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC  432 (662)
Q Consensus       354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  432 (662)
                      .++..+-.|.....+.|..++|..+++...+  +.||. .....+..++.+.+.+++|....++.....  +-+......
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~  159 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILL  159 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHH
Confidence            3477788888888999999999999999988  67876 456677788899999999999999887532  346777888


Q ss_pred             HHHHHhhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076          433 MVDLLGRANKLEEAAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV  497 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  497 (662)
                      +..++.+.|++++|..+|++.- -.| +..+|.++..++...|+.++|...|+++++...+-...|+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~  226 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT  226 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence            8889999999999999999883 234 4788888999999999999999999999887654444444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.20  E-value=0.0002  Score=66.28  Aligned_cols=155  Identities=12%  Similarity=0.104  Sum_probs=97.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006076          360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR  439 (662)
Q Consensus       360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  439 (662)
                      ..+-..+...|+.+....+....... ..-|..............|++.+|...|.+...-  -++|...|+.+.-.|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHH
Confidence            33445555666666666655554331 1112233334566666677777777777776532  35567777777777777


Q ss_pred             cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076          440 ANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       440 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                      .|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++.......+.+..+-..|.-+....|++++|..+..
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            77777777666655 3333 455666777777777777777777777777666666677777777777777777766643

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.17  E-value=3.3e-06  Score=53.53  Aligned_cols=35  Identities=34%  Similarity=0.622  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP  391 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  391 (662)
                      ++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.15  E-value=0.021  Score=62.02  Aligned_cols=410  Identities=14%  Similarity=0.118  Sum_probs=212.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh--hcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHH
Q 006076           93 HNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY--SHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLE  167 (662)
Q Consensus        93 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~  167 (662)
                      .+++..|.+....+.+..  |+. .|...+.++  .|.|+.++|..+++....   .|..|...+-..|...|+.++|..
T Consensus        22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            455666666666665542  222 233333333  366777777777765433   255667777777777777777777


Q ss_pred             HHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------
Q 006076          168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC----------  237 (662)
Q Consensus       168 l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------  237 (662)
                      +|++....    -|+..-...+..++.+.++    +.+-.++--++.+ .++.+.+.+=++++.+...-.          
T Consensus        99 ~Ye~~~~~----~P~eell~~lFmayvR~~~----yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~  169 (932)
T KOG2053|consen   99 LYERANQK----YPSEELLYHLFMAYVREKS----YKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL  169 (932)
T ss_pred             HHHHHHhh----CCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence            77777643    5566666666677777666    5544444434333 234455555555555543311          


Q ss_pred             HHHHHHHHHcCCCCC--HhH---HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHH
Q 006076          238 VMYAGFVFSQMAVKN--VVS---WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMI  312 (662)
Q Consensus       238 ~~~A~~~f~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~  312 (662)
                      +.-|.+.++.+.+.+  ..+   .-.-...+-..|++++|++++..-. ...-..-+...-+.-+..+...+++.+..++
T Consensus       170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~l-a~~l~~~~~~l~~~~~dllk~l~~w~~l~~l  248 (932)
T KOG2053|consen  170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITL-AEKLTSANLYLENKKLDLLKLLNRWQELFEL  248 (932)
T ss_pred             HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence            233555555554433  111   1111223345677888888884321 2222223444445566677778888888888


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHh----------------cCChHHHHHHHhhCC---CCChh-HHHHHHHHHHhcCCh
Q 006076          313 HGYILRRGLDSILPVVSALVTMYAR----------------CGKLELGQCVFDHMD---KRDVV-SWNSLISSYGVHGYG  372 (662)
Q Consensus       313 ~~~~~~~g~~~~~~~~~~li~~y~~----------------~g~~~~A~~~~~~m~---~~~~~-~~~~li~~~~~~g~~  372 (662)
                      -.+++..|.+.    |...++.+.+                .+.++...+..++..   .+++. ++--+..-+-.-|+.
T Consensus       249 ~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~  324 (932)
T KOG2053|consen  249 SSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDS  324 (932)
T ss_pred             HHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCCh
Confidence            88887776432    4443333322                122222222222221   12222 222222223345777


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChH-------HHHHHHHHHhhcCC---
Q 006076          373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVE-------HYACMVDLLGRANK---  442 (662)
Q Consensus       373 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~---  442 (662)
                      ++++-.|-+-  -|-.|   .+..=+..|...=..+.-..++......   .++..       -+.+.+....-.|.   
T Consensus       325 ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~  396 (932)
T KOG2053|consen  325 EEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEK  396 (932)
T ss_pred             HHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence            7765554332  22222   1222222222222222223333322211   11111       12222222222221   


Q ss_pred             --HHHHHHHHHhc------C------CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCcchH
Q 006076          443 --LEEAAKIIEDL------R------IEPGP---------KVWGSLLGSCRIHCNVE---LAERASKRLFELEPTNAGNY  496 (662)
Q Consensus       443 --~~~A~~~~~~m------~------~~p~~---------~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~  496 (662)
                        -+.-..++.+.      +      .-|..         .+-+.|+..|.+.++..   +|+-+++..+...|.|+..-
T Consensus       397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~K  476 (932)
T KOG2053|consen  397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTK  476 (932)
T ss_pred             CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHH
Confidence              11112222111      1      11221         24467788898888754   56677777788889998888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 006076          497 VLLADVYAAADMWDEVKRVKRLLEARGLQKV  527 (662)
Q Consensus       497 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  527 (662)
                      ..|+.+|+-.|-+..|.++++.+.-++++.+
T Consensus       477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D  507 (932)
T KOG2053|consen  477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTD  507 (932)
T ss_pred             HHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence            8999999999999999999999987777643

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0033  Score=58.41  Aligned_cols=245  Identities=11%  Similarity=0.035  Sum_probs=114.7

Q ss_pred             hcCCHHHHHHHHHcCC-C-CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH-HH
Q 006076          234 RFGCVMYAGFVFSQMA-V-KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ-GK  310 (662)
Q Consensus       234 ~~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~-a~  310 (662)
                      -.|.+..+...-.... . .++..-.-|-.+|...|.+...+.   ++  . .+-.|....+..+-.....-++.+. -.
T Consensus        20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI--~-~~~~~~lqAvr~~a~~~~~e~~~~~~~~   93 (299)
T KOG3081|consen   20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EI--K-EGKATPLQAVRLLAEYLELESNKKSILA   93 (299)
T ss_pred             HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cc--c-cccCChHHHHHHHHHHhhCcchhHHHHH
Confidence            3455555554433322 2 344444445666777776544322   22  1 1213333333333333333333322 23


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006076          311 MIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS  390 (662)
Q Consensus       311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  390 (662)
                      .+.+.+.......+......-...|.+.|++++|.+.......-+...  .=+..+.+..+.+-|.+.+++|++-   -+
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~i---de  168 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQI---DE  168 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence            344444444444443333334445667777777777766633222222  2233445566667777777777652   24


Q ss_pred             HhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHH
Q 006076          391 PISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGS  464 (662)
Q Consensus       391 ~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~  464 (662)
                      ..|.+.|.+++.+    .+.+.+|.-+|++|.++  .+|+..+.+-+..+....|++++|..++++.  .-..++.+...
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N  246 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN  246 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            4555555554432    23455555566655432  3455555555555555555555555555554  11223344333


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHhcCCC
Q 006076          465 LLGSCRIHCN-VELAERASKRLFELEPT  491 (662)
Q Consensus       465 ll~~~~~~g~-~~~a~~~~~~~~~~~p~  491 (662)
                      ++..-...|. .+.-.+...++....|.
T Consensus       247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~  274 (299)
T KOG3081|consen  247 LIVLALHLGKDAEVTERNLSQLKLSHPE  274 (299)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence            3333333332 23333444444444444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=0.00074  Score=69.25  Aligned_cols=209  Identities=14%  Similarity=0.119  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREM  279 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m  279 (662)
                      +.+|.-.|+..++.. +.+...|--|.......++-..|+..+.+..+   .|....-+|.-.|...|.-.+|++.|+.-
T Consensus       301 L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~W  379 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKW  379 (579)
T ss_pred             chHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            777777777777765 55677777777777777777777777766543   35667777777888888888888887766


Q ss_pred             hhhhCC-----CcC---CHHHHHHHHHHHHccCCHHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 006076          280 IMESHD-----LCP---NSVTMVSVLQACAALAALEQGKMIHGYI-LRRGLDSILPVVSALVTMYARCGKLELGQCVFDH  350 (662)
Q Consensus       280 ~~~~~~-----~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~  350 (662)
                      +  ...     ..+   +..+-..  ........+....++|-.+ ...+..+|+.++..|.-.|--.|++++|.+.|+.
T Consensus       380 i--~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~  455 (579)
T KOG1125|consen  380 I--RNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA  455 (579)
T ss_pred             H--HhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence            3  111     000   0000000  0111112233344444444 3445456777778888888888888888888887


Q ss_pred             CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076          351 MDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMR  418 (662)
Q Consensus       351 m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~  418 (662)
                      ...  | |...||-|...++...+.++|+..|++.++  ++|+-+ ....|.-+|...|.+++|...|-...
T Consensus       456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            652  3 566888888888888888888888888877  677652 33445557788888888877765543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.07  E-value=6.4e-05  Score=65.21  Aligned_cols=97  Identities=20%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      +......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3455666777777888888888888776 3333 5677777777888888888888888888888888888888888888


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 006076          504 AAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       504 ~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...|++++|.+.++...+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            8888888888888777653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.06  E-value=0.00018  Score=73.19  Aligned_cols=125  Identities=17%  Similarity=0.170  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSC  469 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~  469 (662)
                      ....+|+..+...++++.|.++|+++.+.   .|+  ....|+..+...++-.+|.+++++. ...| |...+......|
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34456677778889999999999999754   355  4456888888889999999998877 2233 666666666778


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ...++.+.|+.+++++.++.|++..+|..|+.+|.+.|++++|.-.+..++.
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            8999999999999999999999999999999999999999999999998874

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.04  E-value=0.0007  Score=74.49  Aligned_cols=144  Identities=11%  Similarity=0.061  Sum_probs=118.5

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH-HH
Q 006076          320 GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD-VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS-FV  395 (662)
Q Consensus       320 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~  395 (662)
                      .+..+...+-.|.......|++++|+.+++...+  || ...+..+...+.+.+++++|+..+++...  ..|+..+ ..
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~  158 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL  158 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence            3556688889999999999999999999998874  54 55788899999999999999999999998  5677654 55


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 006076          396 SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLG  467 (662)
Q Consensus       396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~  467 (662)
                      .+..++.+.|++++|..+|+++...  .+-+...+..+...+-..|+.++|...|++.  ...|...-|+.++.
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~  230 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV  230 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence            5566888999999999999999863  2345889999999999999999999999987  23455566655543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.02  E-value=7.3e-06  Score=51.87  Aligned_cols=35  Identities=43%  Similarity=0.628  Sum_probs=32.8

Q ss_pred             chHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCCh
Q 006076          147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR  183 (662)
Q Consensus       147 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~  183 (662)
                      ++||++|.+|++.|++++|.++|++|.+.  |++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLER--GIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCC
Confidence            47999999999999999999999999999  999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.00  E-value=0.0012  Score=66.65  Aligned_cols=179  Identities=13%  Similarity=0.057  Sum_probs=129.7

Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHH
Q 006076          323 SILPVVSALVTMYARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV-LGA  400 (662)
Q Consensus       323 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a  400 (662)
                      |+...+...+........-..+..++....+ .....+--....+.+.|..++|+..++.+...  .||...|..+ ...
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i  349 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI  349 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            4444444444433333322333333332222 33344444555566789999999999998884  6766665554 457


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~  477 (662)
                      +...++.++|.+.++.+...   .|+ ....-.+.++|.+.|++++|..++++.  ..+-|+..|..|..+|...|+..+
T Consensus       350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence            88999999999999999853   565 667788899999999999999999987  334588999999999999999887


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      +...                 ....|.-.|+|++|.......+++.
T Consensus       427 a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         427 ALLA-----------------RAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            7654                 3566888999999999998888754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.98  E-value=0.028  Score=57.53  Aligned_cols=160  Identities=16%  Similarity=0.158  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD  435 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  435 (662)
                      .+|-..+..-.+..-...|..+|.+..+.+..+ +....++++.-++ .++.+-|.++|+.-.+.+  ..++.--...++
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~Yld  443 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLD  443 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence            356667777777777889999999999988888 5566677776555 578899999999887765  445666678899


Q ss_pred             HHhhcCCHHHHHHHHHhcC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHhc
Q 006076          436 LLGRANKLEEAAKIIEDLR---IEP--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN----AGNYVLLADVYAAA  506 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~  506 (662)
                      -+...|+=..|..+|++.-   +.|  ...+|..+|.--..-|+...+..+-++....-|.+    ...-..+++.|.-.
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~  523 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL  523 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence            9999999999999999872   233  35789999999999999999999998887655521    12344567777766


Q ss_pred             CChHHHHHHHHHH
Q 006076          507 DMWDEVKRVKRLL  519 (662)
Q Consensus       507 g~~~~A~~~~~~m  519 (662)
                      +.+..-..-++.|
T Consensus       524 d~~~c~~~elk~l  536 (656)
T KOG1914|consen  524 DLYPCSLDELKFL  536 (656)
T ss_pred             ccccccHHHHHhh
Confidence            6655444444433

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.97  E-value=1.4e-05  Score=50.26  Aligned_cols=33  Identities=33%  Similarity=0.564  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP  389 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  389 (662)
                      .+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888877

>PLN02789 farnesyltranstransferase

Probab=97.94  E-value=0.0011  Score=66.20  Aligned_cols=185  Identities=8%  Similarity=-0.005  Sum_probs=131.8

Q ss_pred             HHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH--
Q 006076          334 MYARCGKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHG-YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV--  407 (662)
Q Consensus       334 ~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~--  407 (662)
                      .+.+.++.++|..+.+++.+  | +..+|+.--..+...| +.++++..++++..... -+..+|..-...+.+.|..  
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence            34455777788888777663  3 4456776666677777 57999999999988532 2334565554455556653  


Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhc---CC----HHHH
Q 006076          408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIH---CN----VELA  478 (662)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~---g~----~~~a  478 (662)
                      +++..+++.+.+..  +-+...|+...-++.+.|++++|++.++++ ... .|...|+.....+...   |.    .+.+
T Consensus       125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence            67788888887543  447788988889999999999999999988 333 3677788776665544   22    2467


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhc----CChHHHHHHHHHHHh
Q 006076          479 ERASKRLFELEPTNAGNYVLLADVYAAA----DMWDEVKRVKRLLEA  521 (662)
Q Consensus       479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~  521 (662)
                      .....+++..+|+|.++|..+..+|...    ++..+|.++......
T Consensus       203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~  249 (320)
T PLN02789        203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS  249 (320)
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence            7788899999999999999999999873    344567666665443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.92  E-value=0.036  Score=56.81  Aligned_cols=123  Identities=12%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             CChHHHHHHHHhCCCchHHHHHHh--cCCCC-CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh
Q 006076           50 RNKNELIQSLCKQGNLRQALDVLS--IEPNP-TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYS  126 (662)
Q Consensus        50 ~~~~~li~~~~~~g~~~~A~~~~~--~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  126 (662)
                      .+|+.||.-+..+ ..+++.+.++  -+.-| ....|..-+..-....+++....+|.+-+..-+  +...|..-|+---
T Consensus        21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~YVR   97 (656)
T KOG1914|consen   21 DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLSYVR   97 (656)
T ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHHHHH
Confidence            3477799887666 9999999999  33334 455677778888888999999999998877643  4666666665333


Q ss_pred             c-CCChHHHH----HHHh------cCCCCCcchHHHHHHH---------HHhcCCccHHHHHHHHHhhC
Q 006076          127 H-FDSVDDAR----HVFD------KTRRRTIYVWNALFRA---------LTLAGRGEEVLELYRRMNGT  175 (662)
Q Consensus       127 ~-~g~~~~A~----~~f~------~~~~~~~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~  175 (662)
                      + .|+...++    +.|+      .|.-..-..|+..|.-         |..+.+.+...++|+++...
T Consensus        98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t  166 (656)
T KOG1914|consen   98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT  166 (656)
T ss_pred             HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence            2 23333221    2222      1222334456665542         33344555666667666543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.92  E-value=0.0014  Score=72.97  Aligned_cols=215  Identities=11%  Similarity=0.125  Sum_probs=137.0

Q ss_pred             CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHhCCCCchhHHH
Q 006076          251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ-ACAALAALEQGKMIHGYILRRGLDSILPVVS  329 (662)
Q Consensus       251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  329 (662)
                      .+...|..|+..|...+++++|.++.+.-  .  ...|+...+-.++. .+.+.++.+.+..+                 
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~--l--~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------   87 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEH--L--KEHKKSISALYISGILSLSRRPLNDSNLL-----------------   87 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HhCCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence            36778999999999999999999999855  2  23455544333222 34455555554443                 


Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH
Q 006076          330 ALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV  407 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  407 (662)
                      .+++...+..++.....+...|.+  .+-.++..+..+|-+.|+.++|..+|+++.+.. +-|....+.+...++.. ++
T Consensus        88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence            222222333333223333333322  223366677788888888888888888888854 33456677777777777 88


Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----------------------CCCCCHHHHHHH
Q 006076          408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----------------------RIEPGPKVWGSL  465 (662)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------~~~p~~~~~~~l  465 (662)
                      ++|.+++....+.                |...+++.++.+++.++                      +...-..++--+
T Consensus       166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l  229 (906)
T PRK14720        166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL  229 (906)
T ss_pred             HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence            8888877777643                22223333333333333                      222334455556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076          466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  504 (662)
                      -.-|....+++++..+++.+++.+|.|..+..-++..|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            677888899999999999999999999888888888776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.92  E-value=0.00038  Score=70.75  Aligned_cols=127  Identities=11%  Similarity=0.063  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC
Q 006076          327 VVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL  406 (662)
Q Consensus       327 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  406 (662)
                      ...+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.... .+-+...+..-...|.+.++
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence            33445566666788999999999988766666667888888888888999999888864 22244444444556778899


Q ss_pred             HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 006076          407 VEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLRIEP  457 (662)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p  457 (662)
                      ++.|.++.+++.+.   .| +..+|..|...|.+.|++++|+..++.+|+-|
T Consensus       250 ~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  250 YELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            99999999988753   45 56689999999999999999999999887443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.88  E-value=0.036  Score=55.59  Aligned_cols=412  Identities=13%  Similarity=0.124  Sum_probs=206.2

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCC------hhHHHHHHHHhhcCCChHHHHHHHhcCCCC-CcchHHHHHHHH--HhcCC
Q 006076           91 THHNSLSDALNVHSHLTDNGFDQD------PFLVTKLINVYSHFDSVDDARHVFDKTRRR-TIYVWNALFRAL--TLAGR  161 (662)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~  161 (662)
                      -+.+++.++..+|..+.+.. ..+      ....+.++++|.-. +++.....+....+. ....|-.+..++  -+.++
T Consensus        17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~   94 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE   94 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence            35678888888888877653 222      23456777888743 444444444333322 133455555543  45788


Q ss_pred             ccHHHHHHHHHhhCCCCCCC------------ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCC----CCchhHH
Q 006076          162 GEEVLELYRRMNGTGTGIRS------------DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY----NGIVHIM  225 (662)
Q Consensus       162 ~~~A~~l~~~m~~~~~g~~p------------~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~  225 (662)
                      +.+|++.+......-.+-.|            |-.-=+.....+...|.    +.+|+.++..++..=+    .-+..+|
T Consensus        95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~----f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR----FSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            88888888776554101111            11111233445556677    9999988887766533    4788888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhH-------------------------------HHH
Q 006076          226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE-------------------------------ALE  274 (662)
Q Consensus       226 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~-------------------------------A~~  274 (662)
                      +.++-+++++=-++--    +.+...=..-|.-||..|.+.=+.-+                               -++
T Consensus       171 d~~vlmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq  246 (549)
T PF07079_consen  171 DRAVLMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ  246 (549)
T ss_pred             HHHHHHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence            8888888764322211    11111111224444444433211111                               111


Q ss_pred             HHHHHhhhhCCCcCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCChHHHHHHHh
Q 006076          275 LFREMIMESHDLCPNSVT-MVSVLQACAALAALEQGKMIHGYILRRGLDS----ILPVVSALVTMYARCGKLELGQCVFD  349 (662)
Q Consensus       275 ~~~~m~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~  349 (662)
                      ++..-  ...-+.|+... ...+...+..  +.+++..+-+.+....+.+    =+.++..++....+.++...|.+.+.
T Consensus       247 ~l~~W--e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~  322 (549)
T PF07079_consen  247 ILENW--ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA  322 (549)
T ss_pred             HHHHH--HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            11111  11223333221 1122222222  3444444433333321111    12234444444555566666655555


Q ss_pred             hCC--CCChh-------HHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHhHH-HHHH---HHHhcCCC-HHHHH
Q 006076          350 HMD--KRDVV-------SWNSLISSYGVH----GYGGKAIQIFKEMIYHGVSPSPISF-VSVL---GACSHAGL-VEEGK  411 (662)
Q Consensus       350 ~m~--~~~~~-------~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~  411 (662)
                      -+.  +|+..       +-.++-+..+..    -+..+-+.++.+.....  .|..-. ..++   .-+-+.|. -++|.
T Consensus       323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekal  400 (549)
T PF07079_consen  323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKAL  400 (549)
T ss_pred             HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence            433  33322       111222222211    11223333444443322  222111 1111   12333444 67788


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHH----HHhhc---C---CHHHHHHHHHhcCCCC----CHHHHHHHHHH--HHhcCCH
Q 006076          412 MLFESMRKEHMIRPSVEHYACMVD----LLGRA---N---KLEEAAKIIEDLRIEP----GPKVWGSLLGS--CRIHCNV  475 (662)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~----~~~~~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~  475 (662)
                      ++++.+.+-.  +-|..+-|.+..    .|..+   .   ++-+-..++++.++.|    +...-|.|-.|  ...+|++
T Consensus       401 nLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey  478 (549)
T PF07079_consen  401 NLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY  478 (549)
T ss_pred             HHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence            8888776421  234444333322    12111   1   1222334455556555    33344555554  4678999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .++.-....+.+..| ++.+|..++-.+....+++||..++..++.
T Consensus       479 ~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~  523 (549)
T PF07079_consen  479 HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP  523 (549)
T ss_pred             HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence            999999899999999 699999999999999999999999987663

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.0063  Score=56.20  Aligned_cols=162  Identities=17%  Similarity=0.222  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          327 VVSALVTMYARCGKLELGQCVFDHMDK--R---DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       327 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      +|..++-+...+|+.+.|...++++..  |   -+.-..+|  -+-..|++++|+++|+.+.+.. +.|.+++..=+...
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil  130 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence            334445555567777777777776653  2   12222222  2345788999999999998875 44567777666666


Q ss_pred             hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHh---cCCHH
Q 006076          402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRI---HCNVE  476 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~  476 (662)
                      -..|..-+|++-+....+.  +..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+..   ..+.+
T Consensus       131 ka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            6678877888888888765  5789999999999999999999999999998 3455 44555555554433   34678


Q ss_pred             HHHHHHHHHHhcCCCCc
Q 006076          477 LAERASKRLFELEPTNA  493 (662)
Q Consensus       477 ~a~~~~~~~~~~~p~~~  493 (662)
                      .+...+.+.+++.|.+.
T Consensus       209 ~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  209 LARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHHHHHhChHhH
Confidence            89999999999998543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.84  E-value=0.00066  Score=58.76  Aligned_cols=113  Identities=13%  Similarity=0.092  Sum_probs=87.9

Q ss_pred             HHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC
Q 006076          378 IFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI  455 (662)
Q Consensus       378 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  455 (662)
                      .|++...  ..|+. .....+...+...|++++|.+.|+.+....  +.+...+..+...|.+.|++++|...+++. ..
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4555555  45544 445566677888899999999998887532  447788888999999999999999988877 33


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076          456 EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG  494 (662)
Q Consensus       456 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  494 (662)
                      .| +...|..+...+...|+.+.|...+++.++++|++..
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            44 5677888888899999999999999999999998754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.0037  Score=57.68  Aligned_cols=160  Identities=14%  Similarity=0.112  Sum_probs=125.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV-LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL  437 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  437 (662)
                      |..++-+....|+.+-|...++++... + |.+.-...+ ..-+...|++++|.++++.+..+.  +.|..++-.-+-+.
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil  130 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence            444555666788999999999999886 3 554322222 122445799999999999998764  55777888888888


Q ss_pred             hhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---ChHHH
Q 006076          438 GRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD---MWDEV  512 (662)
Q Consensus       438 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A  512 (662)
                      -..|+--+|++-+.+.  .+..|...|.-+-..|...|+++.|.-.+++++-..|.++..+..+++.+.-.|   +.+-|
T Consensus       131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            8888888888877766  456799999999999999999999999999999999999999999999987666   56667


Q ss_pred             HHHHHHHHhC
Q 006076          513 KRVKRLLEAR  522 (662)
Q Consensus       513 ~~~~~~m~~~  522 (662)
                      .+.+.+..+-
T Consensus       211 rkyy~~alkl  220 (289)
T KOG3060|consen  211 RKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHh
Confidence            7777766653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.81  E-value=0.037  Score=53.39  Aligned_cols=367  Identities=16%  Similarity=0.110  Sum_probs=193.5

Q ss_pred             HHHHHHhCCCchHHHHHHhcCCCCCHhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHhhcCCC
Q 006076           55 LIQSLCKQGNLRQALDVLSIEPNPTQHTYELL---LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLV-TKLINVYSHFDS  130 (662)
Q Consensus        55 li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~  130 (662)
                      +-..+...|++.+|+.-|...+..|+..|.++   ...|...|+-..|..-+...++.  .||-... -.-...+.+.|.
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence            55666777888888888874444444444444   34566667777777777766663  4543211 112234557777


Q ss_pred             hHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHH
Q 006076          131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH  210 (662)
Q Consensus       131 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~  210 (662)
                      ++.|..-|+.+.+.++. -+....++.+.-       +.+++.           .....+..+...|+    ...+....
T Consensus       122 le~A~~DF~~vl~~~~s-~~~~~eaqskl~-------~~~e~~-----------~l~~ql~s~~~~GD----~~~ai~~i  178 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEPS-NGLVLEAQSKLA-------LIQEHW-----------VLVQQLKSASGSGD----CQNAIEMI  178 (504)
T ss_pred             HHHHHHHHHHHHhcCCC-cchhHHHHHHHH-------hHHHHH-----------HHHHHHHHHhcCCc----hhhHHHHH
Confidence            77777777666543321 011111111111       111111           11222333344455    66666666


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCc
Q 006076          211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM---AVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC  287 (662)
Q Consensus       211 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  287 (662)
                      ..+++.. +-|...+..-..+|...|.+..|+.-+...   ...++...--+-..+-..|+.+.++...++-    ..+.
T Consensus       179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iREC----LKld  253 (504)
T KOG0624|consen  179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIREC----LKLD  253 (504)
T ss_pred             HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHH----HccC
Confidence            6666654 556667777777777777777776554433   3445666666666677777777777766654    2344


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC--hh---HHH
Q 006076          288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD--VV---SWN  360 (662)
Q Consensus       288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~--~~---~~~  360 (662)
                      ||....-..   |   ..+....+.++.|.                .....+++.++..-.+...+  |.  .+   .+.
T Consensus       254 pdHK~Cf~~---Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r  311 (504)
T KOG0624|consen  254 PDHKLCFPF---Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR  311 (504)
T ss_pred             cchhhHHHH---H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence            554322111   1   11111111111111                11233445454444444332  22  12   334


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006076          361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR  439 (662)
Q Consensus       361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  439 (662)
                      .+-.+|...|++.+|++.-.+.++  +.|| ..++.--..||.-...++.|+.-|+...+   +.++-.-        ++
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e---~n~sn~~--------~r  378 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE---LNESNTR--------AR  378 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcccHH--------HH
Confidence            455667777888888888888877  5666 56776777777777788888888887753   2232111        01


Q ss_pred             cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC
Q 006076          440 ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE-LEPTN  492 (662)
Q Consensus       440 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~  492 (662)
                      . -++.|.++-+..+ +.|   |.-++. -.++..-.+...+|+++-. -.|+|
T Consensus       379 e-Gle~Akrlkkqs~-kRD---YYKILG-VkRnAsKqEI~KAYRKlAqkWHPDN  426 (504)
T KOG0624|consen  379 E-GLERAKRLKKQSG-KRD---YYKILG-VKRNASKQEITKAYRKLAQKWHPDN  426 (504)
T ss_pred             H-HHHHHHHHHHHhc-cch---HHHHhh-hcccccHHHHHHHHHHHHHhcCCcc
Confidence            1 2344555554443 222   222222 2344445566666776654 56776

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.79  E-value=3.1e-05  Score=48.56  Aligned_cols=34  Identities=32%  Similarity=0.620  Sum_probs=31.6

Q ss_pred             cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC
Q 006076          146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS  181 (662)
Q Consensus       146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p  181 (662)
                      +.+||.+|.+|++.|+++.|+++|++|.+.  |++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~--gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQ--GVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence            368999999999999999999999999998  8887

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0096  Score=55.44  Aligned_cols=168  Identities=14%  Similarity=0.135  Sum_probs=114.8

Q ss_pred             HHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 006076          275 LFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR  354 (662)
Q Consensus       275 ~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~  354 (662)
                      +.+.+  .......|......-...|.+.+++++|.+.....    .  +......=+..+.|..+++-|++.++.|.+-
T Consensus        95 l~E~~--a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   95 LYELV--ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHH--HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44444  34444444444444455688889999998877651    1  2233333355667888899999999999874


Q ss_pred             -ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076          355 -DVVSWNSLISSYGV----HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEH  429 (662)
Q Consensus       355 -~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (662)
                       +-.+.+-|..++..    .+...+|.-+|++|-+. ..|+..+.+....++...|++++|..+++....+.  ..++.+
T Consensus       167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpet  243 (299)
T KOG3081|consen  167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPET  243 (299)
T ss_pred             chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHH
Confidence             34455656665543    44688899999999765 68999999999999999999999999999988654  446667


Q ss_pred             HHHHHHHHhhcCCHHHHH-HHHHhc
Q 006076          430 YACMVDLLGRANKLEEAA-KIIEDL  453 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~-~~~~~m  453 (662)
                      ...+|-.-...|...++. +.+.+.
T Consensus       244 L~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHH
Confidence            766666666666554433 334444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.76  E-value=3.3e-05  Score=47.22  Aligned_cols=31  Identities=42%  Similarity=0.636  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGV  387 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  387 (662)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888887764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.73  E-value=0.015  Score=64.95  Aligned_cols=240  Identities=10%  Similarity=0.034  Sum_probs=144.2

Q ss_pred             CCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHH
Q 006076          179 IRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWS  257 (662)
Q Consensus       179 ~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~  257 (662)
                      ..|+ ...+..|+..+...++    ++++.++....++.. +.....|-.+...|.+.++.+++..+             
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~----~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------   87 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENL----TDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------   87 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------
Confidence            3443 3355667777767777    888888877655543 22233333333366666665554433             


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076          258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR  337 (662)
Q Consensus       258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  337 (662)
                      .++.......++.-+..+...|  ...  .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.
T Consensus        88 ~~l~~~~~~~~~~~ve~~~~~i--~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         88 NLIDSFSQNLKWAIVEHICDKI--LLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE  162 (906)
T ss_pred             hhhhhcccccchhHHHHHHHHH--Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence            3334444444453333333444  221  2344567777788888899999999999988887 5578888888888888


Q ss_pred             cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076          338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM  417 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~  417 (662)
                      . ++++|.+++.+..           .-|...+++.++.+++.++...  .|+...+               -.++.+.+
T Consensus       163 ~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki  213 (906)
T PRK14720        163 E-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKV  213 (906)
T ss_pred             h-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHH
Confidence            8 8888888876542           3366677888888888888773  4444322               12222223


Q ss_pred             HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076          418 RKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR  470 (662)
Q Consensus       418 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~  470 (662)
                      ....|..--+.++--+..-|-..++++++..+++.+ ...| |.....-++..|.
T Consensus       214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            222222333445555666677777777777777766 3333 4444445555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.71  E-value=0.00041  Score=55.18  Aligned_cols=92  Identities=18%  Similarity=0.208  Sum_probs=71.7

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD  507 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  507 (662)
                      +..+...+...|++++|...+++. ...| +...|..+...+...++++.|...+++.....|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455666777788888888888776 3333 34667777778888888888888888888888887778888888888888


Q ss_pred             ChHHHHHHHHHHHh
Q 006076          508 MWDEVKRVKRLLEA  521 (662)
Q Consensus       508 ~~~~A~~~~~~m~~  521 (662)
                      ++++|...+....+
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            88888888877654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.71  E-value=0.0015  Score=57.37  Aligned_cols=114  Identities=18%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             CCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 006076          404 AGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLR-IEPGP----KVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~  477 (662)
                      .++...+...++.+.++++-.| .....-.+...+...|++++|...|+... ..||.    .....|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5566666666666655431110 12233334455666666766666666651 12332    233345555666677777


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      |+..++... -.+-.+..+..++++|.+.|++++|...|+.
T Consensus       104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            776665522 1222345566677777777777777777664

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.60  E-value=9.1e-05  Score=58.02  Aligned_cols=77  Identities=21%  Similarity=0.234  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076          441 NKLEEAAKIIEDL-RIEP---GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK  516 (662)
Q Consensus       441 g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  516 (662)
                      |++++|+.+++++ ...|   +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5556666666555 1122   344455566666667777777777666 5555555555566677777777777777776


Q ss_pred             HH
Q 006076          517 RL  518 (662)
Q Consensus       517 ~~  518 (662)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.59  E-value=0.001  Score=55.89  Aligned_cols=58  Identities=10%  Similarity=-0.038  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          464 SLLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .+..++...|+++.|...++.+....|++   +..+..++.+|.+.|++++|.+.++.+.+
T Consensus        44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34444444444555555555444444432   22344444445555555555555544443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.57  E-value=0.00023  Score=53.27  Aligned_cols=64  Identities=20%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 006076          458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD-MWDEVKRVKRLLEA  521 (662)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~  521 (662)
                      ++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|.+.| ++++|.+.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999 79999999988765

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.57  E-value=0.0018  Score=54.46  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLL  466 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll  466 (662)
                      ++..+...+...|++++|.+.|..+.....-.+ ....+..+...+.+.|++++|.+.++.+ ...|+    ..++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344455555666667777776666654321101 1334555677777777777777777765 22232    45566677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076          467 GSCRIHCNVELAERASKRLFELEPTNAGNY  496 (662)
Q Consensus       467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  496 (662)
                      .++...|+.++|...++++++..|+++...
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            777788888888888888888888765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.57  E-value=7.8e-05  Score=45.52  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=25.1

Q ss_pred             chHHHHHHHHHhcCCccHHHHHHHHHhhC
Q 006076          147 YVWNALFRALTLAGRGEEVLELYRRMNGT  175 (662)
Q Consensus       147 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~  175 (662)
                      ++||++|++|++.|++++|.++|++|.+.
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            47888999999999999999999988876

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.52  E-value=0.13  Score=51.75  Aligned_cols=417  Identities=12%  Similarity=0.035  Sum_probs=221.2

Q ss_pred             cchhhhccCC--CchhhHHhhhhccCCCCccccCCCChHHHHHHH--HhCCCchHHHHHHh------cCCCC--------
Q 006076           17 YHTNSIAHLP--PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSL--CKQGNLRQALDVLS------IEPNP--------   78 (662)
Q Consensus        17 ~~~~li~~y~--~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~------~~~~p--------   78 (662)
                      +++.++++|.  .++...... ....+..+.+    .|-.+..++  -+.+.+.+|++.|.      .+..|        
T Consensus        48 l~grilnAffl~nld~Me~~l-~~l~~~~~~s----~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~  122 (549)
T PF07079_consen   48 LGGRILNAFFLNNLDLMEKQL-MELRQQFGKS----AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQ  122 (549)
T ss_pred             HhhHHHHHHHHhhHHHHHHHH-HHHHHhcCCc----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence            7888999988  777766666 5555554432    365666655  46888999988887      12221        


Q ss_pred             ----CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC----CCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHH
Q 006076           79 ----TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGF----DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWN  150 (662)
Q Consensus        79 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~  150 (662)
                          |-.-=+..+.++...|++.+|+.++++++..=+    ..+..+|+.++-++++.=-+    ++-+.+...=..-|-
T Consensus       123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfL----El~e~~s~dl~pdyY  198 (549)
T PF07079_consen  123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFL----ELKESMSSDLYPDYY  198 (549)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHH----HHHHhcccccChHHH
Confidence                122223455677788999999999888876543    37888888888777754111    111222221123455


Q ss_pred             HHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCc-hhHHHHHH
Q 006076          151 ALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGI-VHIMTTLI  229 (662)
Q Consensus       151 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li  229 (662)
                      -+|-.|.+.=+.-++      -.=.  .+.|...-+..++....-...  .++.--.+++..-.+.-+.|+ ..+...|+
T Consensus       199 emilfY~kki~~~d~------~~Y~--k~~peeeL~s~imqhlfi~p~--e~l~~~mq~l~~We~~yv~p~~~LVi~~L~  268 (549)
T PF07079_consen  199 EMILFYLKKIHAFDQ------RPYE--KFIPEEELFSTIMQHLFIVPK--ERLPPLMQILENWENFYVHPNYDLVIEPLK  268 (549)
T ss_pred             HHHHHHHHHHHHHhh------chHH--hhCcHHHHHHHHHHHHHhCCH--hhccHHHHHHHHHHhhccCCchhHHHHHHH
Confidence            566565543111111      0000  233444444444444333221  113334445544444445554 33444555


Q ss_pred             HHHHhcCCHHHHHHHHHcCC--------CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHH------
Q 006076          230 DMYARFGCVMYAGFVFSQMA--------VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS------  295 (662)
Q Consensus       230 ~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~------  295 (662)
                      .-+.+  +.+++..+-+.+.        ++=+.++..++...++.++..+|-+.+.-+  .  -+.|+...-.-      
T Consensus       269 ~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL--~--~ldp~~svs~Kllls~~  342 (549)
T PF07079_consen  269 QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL--K--ILDPRISVSEKLLLSPK  342 (549)
T ss_pred             HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H--hcCCcchhhhhhhcCHH
Confidence            55554  4444444433332        234567888999999999999998887755  2  23344321111      


Q ss_pred             -HHHHHH-cc---CCHHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCC-hHHHHHHHhhCCC---CChhHHHHHH
Q 006076          296 -VLQACA-AL---AALEQGKMIHGYILRRGLDSILPVVSAL---VTMYARCGK-LELGQCVFDHMDK---RDVVSWNSLI  363 (662)
Q Consensus       296 -ll~a~~-~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~-~~~A~~~~~~m~~---~~~~~~~~li  363 (662)
                       +-+..+ .-   .++..-..+++.+...++... ....-|   ..-+-+.|. -++|..+++.+.+   -|..+-|...
T Consensus       343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~  421 (549)
T PF07079_consen  343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF  421 (549)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence             111111 11   112222333333333322211 111112   222444555 6667777776653   3444333322


Q ss_pred             ----HHHHhc---CChHHHHHHHHHHHHcCCCCCHhHH----HHHHH--HHhcCCCHHHHHHHHHHhHHhcCCCCChHHH
Q 006076          364 ----SSYGVH---GYGGKAIQIFKEMIYHGVSPSPISF----VSVLG--ACSHAGLVEEGKMLFESMRKEHMIRPSVEHY  430 (662)
Q Consensus       364 ----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  430 (662)
                          ..|.+.   ..+.+-+.+-+-..+.|++|-.+.=    +.|..  -+...|++.++.-+-..+.+   +.|++.+|
T Consensus       422 ~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~  498 (549)
T PF07079_consen  422 LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAY  498 (549)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHH
Confidence                223221   1223333333444556777644322    22222  23456888888776666653   67888888


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 006076          431 ACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS  464 (662)
Q Consensus       431 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~  464 (662)
                      ..+.-.+....+++||.+++.++|  |+..+|++
T Consensus       499 RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds  530 (549)
T PF07079_consen  499 RLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS  530 (549)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence            888888888888888888888876  56666665

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.50  E-value=0.15  Score=53.84  Aligned_cols=253  Identities=13%  Similarity=0.140  Sum_probs=126.5

Q ss_pred             hCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CCC--------CChhHHHHHHHHhhcCCCh
Q 006076           61 KQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDN-GFD--------QDPFLVTKLINVYSHFDSV  131 (662)
Q Consensus        61 ~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~y~~~g~~  131 (662)
                      ..=.+++|.++.+.  .|.+..|..+.......-.++.|...|-+.... |+.        .+...-.+=|.+|  .|++
T Consensus       675 e~vgledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~f  750 (1189)
T KOG2041|consen  675 EAVGLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEF  750 (1189)
T ss_pred             HHhchHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcch
Confidence            33445666666654  345566666666555555566666555433211 110        1111122223333  4899


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCC----hhhHHHHHHHHHhCCCCccchHHHH
Q 006076          132 DDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSD----RFTYTYVLKACVASSCGFSLLKHGK  207 (662)
Q Consensus       132 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~a~  207 (662)
                      ++|.+++-.+.++|.     .|..+.+.|++-...++++.-     |-..|    ...+..+-..++....    ++.|.
T Consensus       751 eeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g-----~~d~dD~~~e~A~r~ig~~fa~~~~----We~A~  816 (1189)
T KOG2041|consen  751 EEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG-----GSDDDDEGKEDAFRNIGETFAEMME----WEEAA  816 (1189)
T ss_pred             hHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc-----CCCcchHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            999999999988875     355566667776666666532     11111    1234444444444444    55555


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCc
Q 006076          208 EIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLC  287 (662)
Q Consensus       208 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  287 (662)
                      +.+..--.         ...+++.|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+-     + .
T Consensus       817 ~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~-----s-~  880 (1189)
T KOG2041|consen  817 KYYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR-----S-L  880 (1189)
T ss_pred             HHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc-----c-C
Confidence            55433211         113455555555555555555555543 233445556666666666666665433     1 1


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-----------CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076          288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRG-----------LDSILPVVSALVTMYARCGKLELGQCVFDHMDK  353 (662)
Q Consensus       288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~  353 (662)
                      |.     ..+.+|..++++.+|.++-+...-..           +-.+..+ ---|.++-+.|+.-+|.+++.+|.+
T Consensus       881 pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  881 PK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             cH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence            11     23445555555555544432210000           0000000 1135566677777777777777753

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.49  E-value=0.0047  Score=54.15  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=44.7

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCChH
Q 006076          298 QACAALAALEQGKMIHGYILRRGLDSI--LPVVSALVTMYARCGKLELGQCVFDHMDKR--DVVSWNSLISSYGVHGYGG  373 (662)
Q Consensus       298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~  373 (662)
                      ..+...|++++|...++.+......+.  ....-.|...+...|++++|...++....+  ....+......|...|+.+
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~  135 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD  135 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence            444555666666666666555442222  112333455566666666666666554432  2234445555666666666


Q ss_pred             HHHHHHHH
Q 006076          374 KAIQIFKE  381 (662)
Q Consensus       374 ~A~~~~~~  381 (662)
                      +|...|+.
T Consensus       136 ~A~~~y~~  143 (145)
T PF09976_consen  136 EARAAYQK  143 (145)
T ss_pred             HHHHHHHH
Confidence            66666654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.47  E-value=0.0063  Score=59.88  Aligned_cols=133  Identities=17%  Similarity=0.176  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA-CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD  435 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  435 (662)
                      .+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+  +.+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence            468888888888888999999999998542 2234444444443 333577777999999998764  678889999999


Q ss_pred             HHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          436 LLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      .+.+.|+.+.|..+|++. ..-|.    ...|...+.--.+.|+.+....+.+++.+.-|++
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            999999999999999987 22333    3589999999999999999999999999988874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.45  E-value=0.15  Score=50.86  Aligned_cols=121  Identities=15%  Similarity=0.174  Sum_probs=91.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHH
Q 006076          329 SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE  408 (662)
Q Consensus       329 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  408 (662)
                      +..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++...      +-.++-|..++.+|.+.|...
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK  254 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence            33455566789999999999988889999999999999999999887765432      223478888999999999999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006076          409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC  469 (662)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~  469 (662)
                      +|..+...+.           +..-+.+|.++|++.+|.+.--+.+   |...+..+..-|
T Consensus       255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~  301 (319)
T PF04840_consen  255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC  301 (319)
T ss_pred             HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence            9988877631           1456788999999999987765543   555444444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.45  E-value=0.006  Score=65.15  Aligned_cols=37  Identities=14%  Similarity=0.130  Sum_probs=24.9

Q ss_pred             CCChhHHHHHHHHHHhc--C---ChHHHHHHHHHHHHcCCCCCH
Q 006076          353 KRDVVSWNSLISSYGVH--G---YGGKAIQIFKEMIYHGVSPSP  391 (662)
Q Consensus       353 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~  391 (662)
                      ..|...|...+.|....  +   ...+|..+|++..+  ..|+.
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~  375 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDF  375 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCc
Confidence            45677787777775432  2   26678888888887  56764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.44  E-value=0.00096  Score=68.11  Aligned_cols=105  Identities=13%  Similarity=0.043  Sum_probs=87.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCH
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNV  475 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~  475 (662)
                      ...+...|++++|.+.|+.+.+..  +.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            456677899999999999998642  446788889999999999999999999887 4455 567888889999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076          476 ELAERASKRLFELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  504 (662)
                      ++|+..++++++++|+++.....+..+..
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999998877766655543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.43  E-value=0.002  Score=58.42  Aligned_cols=82  Identities=13%  Similarity=0.030  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD  501 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  501 (662)
                      ...+..+...|.+.|++++|...|++. ...|+    ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            345666667777777777777777765 22222    3567778888888889999999999888888888888888888


Q ss_pred             HHHhcCC
Q 006076          502 VYAAADM  508 (662)
Q Consensus       502 ~~~~~g~  508 (662)
                      +|...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            8887776

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.42  E-value=0.00046  Score=50.87  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=47.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +...+...|++++|...++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456777888888888888888888888888888888888888888888888887653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.40  E-value=0.0019  Score=58.30  Aligned_cols=94  Identities=10%  Similarity=-0.129  Sum_probs=75.3

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA  500 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  500 (662)
                      ....|..+...+...|++++|...|++. .+.|+    ..+|..+...+...|+.++|+..+++++++.|.....+..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            3556677778888889999999998877 23332    357888999999999999999999999999999888888888


Q ss_pred             HHHH-------hcCChHHHHHHHHHH
Q 006076          501 DVYA-------AADMWDEVKRVKRLL  519 (662)
Q Consensus       501 ~~~~-------~~g~~~~A~~~~~~m  519 (662)
                      .+|.       +.|++++|...+++-
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            8888       788888776666543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.40  E-value=0.0031  Score=64.45  Aligned_cols=103  Identities=13%  Similarity=0.072  Sum_probs=82.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006076          362 LISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA  440 (662)
Q Consensus       362 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  440 (662)
                      ....+...|++++|+++|++.++.  .| +...|..+..++.+.|++++|...++.+.+..  +.+...|..+..+|...
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHh
Confidence            345667889999999999999984  44 45677788889999999999999999998642  34677899999999999


Q ss_pred             CCHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 006076          441 NKLEEAAKIIEDL-RIEPGPKVWGSLLGS  468 (662)
Q Consensus       441 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~  468 (662)
                      |++++|...|++. .+.|+......++.-
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~  112 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKE  112 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999987 556665554444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.37  E-value=0.0024  Score=50.55  Aligned_cols=62  Identities=24%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEP  490 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  490 (662)
                      .+..+...+...|++++|.+.++.. ...| +..+|..+...+...|+.+.|...+++..+..|
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            3334444444444444444444433 1112 223444455555555555555555555554444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.34  E-value=0.034  Score=48.93  Aligned_cols=131  Identities=12%  Similarity=0.074  Sum_probs=106.2

Q ss_pred             CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC------CCCCHH
Q 006076          387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR------IEPGPK  460 (662)
Q Consensus       387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~~  460 (662)
                      ..|+...-..|..+....|+..+|...|++.. ..-+..|......+.++....+++.+|...++++.      -.||..
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            56777777788889999999999999999886 33356688888889999999999999999988772      234443


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                        ..+...+...|..+.|+..|+.++.-.|. +..-.....++.++|+.++|..-+..+.+
T Consensus       164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         164 --LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             --HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence              44667888999999999999999998886 56667778899999999999887766654

>PRK15331 chaperone protein SicA; Provisional

Probab=97.34  E-value=0.0061  Score=53.00  Aligned_cols=91  Identities=12%  Similarity=0.074  Sum_probs=78.1

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          431 ACMVDLLGRANKLEEAAKIIEDLR-IE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       431 ~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      -....-+-..|++++|..+|.-+- .. -+...|..|..+|...++++.|...|..+..++++||..+...+..|...|+
T Consensus        41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence            344455668899999999998762 22 3666788899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 006076          509 WDEVKRVKRLLEA  521 (662)
Q Consensus       509 ~~~A~~~~~~m~~  521 (662)
                      .+.|...|....+
T Consensus       121 ~~~A~~~f~~a~~  133 (165)
T PRK15331        121 AAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987774

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.30  E-value=0.23  Score=49.57  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH
Q 006076          229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ  308 (662)
Q Consensus       229 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~  308 (662)
                      |.-+...|+...|.++-.+..-||..-|-..+.+++..++|++-.++-.     . .  -.+.-|-.++.+|...|+..+
T Consensus       184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~-----s-k--KsPIGyepFv~~~~~~~~~~e  255 (319)
T PF04840_consen  184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK-----S-K--KSPIGYEPFVEACLKYGNKKE  255 (319)
T ss_pred             HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh-----C-C--CCCCChHHHHHHHHHCCCHHH
Confidence            3344445555566666555555555556666666666666554433221     1 1  122445555555555555555


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 006076          309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV  347 (662)
Q Consensus       309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  347 (662)
                      |..+...+          .+..-+.+|.++|++.+|.+.
T Consensus       256 A~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  256 ASKYIPKI----------PDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence            55544431          113345555555555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.00086  Score=63.46  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076          374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIED  452 (662)
Q Consensus       374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~  452 (662)
                      +...+-++++.+|            +-..+.+++.+|...|...++   +.| |...|..-..+|.+.|.++.|++-.+.
T Consensus        76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3445555555554            346778999999999999985   455 677788889999999999999988776


Q ss_pred             c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          453 L-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       453 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                      . .+.|. ..+|..|..+|...|++++|.+.|++.++++|++......|
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence            6 55664 56899999999999999999999999999999986443333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.28  E-value=0.01  Score=53.74  Aligned_cols=131  Identities=11%  Similarity=0.085  Sum_probs=88.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006076          355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS--PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYAC  432 (662)
Q Consensus       355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  432 (662)
                      ....|..+...|...|++++|+..|++.......++  ...+..+...+.+.|++++|...++...+..  +.+...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence            445677777788888888888888888876443332  3567777778888888888888888876532  234566666


Q ss_pred             HHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          433 MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      +...|...|+...+..-++..                  ...+++|...++++.+.+|++   |..++..+...|+
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            777777777766655333221                  112677888999999988875   5555555555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.0029  Score=59.96  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=76.6

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcC
Q 006076          364 SSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRAN  441 (662)
Q Consensus       364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g  441 (662)
                      .-+.+.+++.+|+..|.+.++  +.|+ .+-|..=..||++.|.++.|++-.+....   +.| ....|..|..+|...|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence            346778899999999999988  5664 45666677799999999999988887764   445 3678999999999999


Q ss_pred             CHHHHHHHHHhc-CCCCCHHHHHH
Q 006076          442 KLEEAAKIIEDL-RIEPGPKVWGS  464 (662)
Q Consensus       442 ~~~~A~~~~~~m-~~~p~~~~~~~  464 (662)
                      ++++|.+.|++. .+.|+-.+|-+
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHH
Confidence            999999998887 67887766643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.14  E-value=0.12  Score=50.93  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=43.6

Q ss_pred             CCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhcC---C-----CCCHH-HHHHHHHHHHh
Q 006076          405 GLVEEGKMLFESMRKEHMIRP----SVEHYACMVDLLGRANKLEEAAKIIEDLR---I-----EPGPK-VWGSLLGSCRI  471 (662)
Q Consensus       405 g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~  471 (662)
                      |++++|.+.|+...+-+.-..    -..++..+...+.+.|++++|.++|++..   .     +.+.. .+-..+-.+..
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~  208 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA  208 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            555555555554443221111    12344556666777777777777776651   1     11111 12223334555


Q ss_pred             cCCHHHHHHHHHHHHhcCCC
Q 006076          472 HCNVELAERASKRLFELEPT  491 (662)
Q Consensus       472 ~g~~~~a~~~~~~~~~~~p~  491 (662)
                      .||...|...+++..+.+|.
T Consensus       209 ~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  209 MGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             TT-HHHHHHHHHHHGTTSTT
T ss_pred             cCCHHHHHHHHHHHHhhCCC
Confidence            67777777777777777664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.13  E-value=0.0006  Score=50.77  Aligned_cols=53  Identities=19%  Similarity=0.248  Sum_probs=43.4

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...|++++|...++++++.+|++...+..++.+|.+.|++++|.++++.+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35688888888888888888888888888888888888888888888876653

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.12  E-value=0.06  Score=53.18  Aligned_cols=102  Identities=13%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHh-cCCCCC--hH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-----SP-ISFVSVLGACSHAGLVEEGKMLFESMRKE-HMIRPS--VE  428 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~--~~  428 (662)
                      .+..+...+.+.|++++|+++|++....-...     +. ..|...+-.+...|++..|.+.++..... .++..+  ..
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            44556667778888888888888776543221     11 12233333555667888888888776532 123222  33


Q ss_pred             HHHHHHHHHhh--cCCHHHHHHHHHhcCCCCCHH
Q 006076          429 HYACMVDLLGR--ANKLEEAAKIIEDLRIEPGPK  460 (662)
Q Consensus       429 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~  460 (662)
                      ....|++++-.  ...+++|..-|+.+. +.|..
T Consensus       237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w  269 (282)
T PF14938_consen  237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW  269 (282)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence            45556666643  346666777677664 33443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.11  E-value=0.11  Score=54.48  Aligned_cols=209  Identities=15%  Similarity=0.128  Sum_probs=110.6

Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH
Q 006076          211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS  290 (662)
Q Consensus       211 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~  290 (662)
                      +.+.+.|-.|+...   +.+.++-.|.+.+|.++|.+                  +|....|+++|..|  +--.     
T Consensus       624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDl--RMFD-----  675 (1081)
T KOG1538|consen  624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDL--RMFD-----  675 (1081)
T ss_pred             HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHH--HHHH-----
Confidence            34555665566543   34556667888888888765                  45556677777666  2110     


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 006076          291 VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG  370 (662)
Q Consensus       291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g  370 (662)
                           ..+-+...|..++-+.+.+.-.+-.  -++.--.+...++...|+.++|..+.                  ..+|
T Consensus       676 -----~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~g  730 (1081)
T KOG1538|consen  676 -----YAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHG  730 (1081)
T ss_pred             -----HHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hccc
Confidence                 1122333344443333332211100  00000123345556667777765543                  3344


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII  450 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  450 (662)
                      -.+-++++-+++-.    .+..+...+..-+-+...+..|-++|..|-.          ...++++....+++.+|..+-
T Consensus       731 W~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalA  796 (1081)
T KOG1538|consen  731 WVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALA  796 (1081)
T ss_pred             HHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhh
Confidence            44555555444422    2334555555555666777778888877742          135778888888888888888


Q ss_pred             HhcC-CCCCHHH-HHH----------HHHHHHhcCCHHHHHHHHHHHH
Q 006076          451 EDLR-IEPGPKV-WGS----------LLGSCRIHCNVELAERASKRLF  486 (662)
Q Consensus       451 ~~m~-~~p~~~~-~~~----------ll~~~~~~g~~~~a~~~~~~~~  486 (662)
                      ++.| +.||+.. |..          --.+|.+.|+..+|.++++++.
T Consensus       797 e~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  797 EKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT  844 (1081)
T ss_pred             hhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence            8875 3444432 111          1134445555555555555543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.10  E-value=0.031  Score=50.38  Aligned_cols=81  Identities=10%  Similarity=-0.007  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076          356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS--PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM  433 (662)
Q Consensus       356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  433 (662)
                      ...|..+...+...|++++|+..|++.......|.  ..++..+...+.+.|++++|...++...+..  +.....+..+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l  112 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence            44666777777778888888888888776432221  2466777777778888888888887776431  2234445555


Q ss_pred             HHHHh
Q 006076          434 VDLLG  438 (662)
Q Consensus       434 i~~~~  438 (662)
                      ...|.
T Consensus       113 a~i~~  117 (168)
T CHL00033        113 AVICH  117 (168)
T ss_pred             HHHHH
Confidence            55555

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.08  E-value=0.0018  Score=48.97  Aligned_cols=57  Identities=14%  Similarity=0.056  Sum_probs=49.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ..+...+++++|..++++++.++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            467788899999999999999999988899999999999999999999998887643

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.08  E-value=0.0019  Score=47.59  Aligned_cols=61  Identities=23%  Similarity=0.311  Sum_probs=48.0

Q ss_pred             HHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          433 MVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      +...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456678888899999888887 4445 567788888888999999999999999999988764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.07  E-value=0.0021  Score=50.26  Aligned_cols=80  Identities=21%  Similarity=0.258  Sum_probs=44.4

Q ss_pred             cCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 006076          369 HGYGGKAIQIFKEMIYHGVS-PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEA  446 (662)
Q Consensus       369 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A  446 (662)
                      +|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+.   .| +......+..+|.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---DPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH---HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC---CCCCHHHHHHHHHHHHHhCCHHHH
Confidence            46677777777777664321 1333444456666777777777777765 211   22 223333446666677777777


Q ss_pred             HHHHHh
Q 006076          447 AKIIED  452 (662)
Q Consensus       447 ~~~~~~  452 (662)
                      ++.+++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            766654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.019  Score=54.98  Aligned_cols=101  Identities=14%  Similarity=0.083  Sum_probs=86.1

Q ss_pred             CCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076          424 RPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIH---CNVELAERASKRLFELEPTNAGNYVL  498 (662)
Q Consensus       424 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~  498 (662)
                      +-|...|-.|...|.+.|+...|..-|.+. .+. +++..+..+..++...   ....++..++++++.++|.|+.+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            558999999999999999999999999887 333 4666777776665433   35678999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          499 LADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       499 l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      |+-.+...|++.+|...++.|.+...
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            99999999999999999999997543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.02  E-value=0.00048  Score=42.87  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=30.8

Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 006076          482 SKRLFELEPTNAGNYVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  514 (662)
                      ++++++++|+++.+|..|+.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            688999999999999999999999999999863

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.01  E-value=0.025  Score=55.65  Aligned_cols=127  Identities=10%  Similarity=0.070  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076          254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA-CAALAALEQGKMIHGYILRRGLDSILPVVSALV  332 (662)
Q Consensus       254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  332 (662)
                      .+|..++...-+.+..+.|..+|.+.  ...+ ..+...|...... +...++.+.|..+|+...+. +..+...+...+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a--~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~   77 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRA--RKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHH--HcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence            35677777777777777777777777  3222 1122333322222 23345666677788777765 455677777777


Q ss_pred             HHHHhcCChHHHHHHHhhCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          333 TMYARCGKLELGQCVFDHMDK--R----DVVSWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       333 ~~y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      +.+.+.|+.+.|+.+|++...  +    -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus        78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            888888888888888877653  2    224677777777777777777777777766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.95  E-value=0.008  Score=61.60  Aligned_cols=121  Identities=10%  Similarity=0.094  Sum_probs=100.4

Q ss_pred             cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC----CCcc
Q 006076           74 IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR----RTIY  147 (662)
Q Consensus        74 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~  147 (662)
                      ...+.+......++..+....+++.+..++-......  ...-+.+..++|+.|.+.|..+.+..+++.=..    +|..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            5566688888899999998889999999888887652  333455667999999999999999999976443    6889


Q ss_pred             hHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhC
Q 006076          148 VWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVAS  196 (662)
Q Consensus       148 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~  196 (662)
                      ++|.||..+.+.|++..|.++...|...  +...+..|+...+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ--e~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQ--EEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999999888  6777778888877777664

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.95  E-value=0.011  Score=47.54  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhcCC--------CHHHHHHHHHHhHHhcCCCCChH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPSPISFVSVLGACSHAG--------LVEEGKMLFESMRKEHMIRPSVE  428 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~  428 (662)
                      +-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+..        .+.+.+.+++.|.. .+++|+..
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e  105 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence            334455666666889999999999999998 889999999998876542        24456777777773 46888888


Q ss_pred             HHHHHHHHHhh
Q 006076          429 HYACMVDLLGR  439 (662)
Q Consensus       429 ~~~~li~~~~~  439 (662)
                      +|+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            88888777654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.92  E-value=0.51  Score=46.79  Aligned_cols=239  Identities=16%  Similarity=0.137  Sum_probs=150.4

Q ss_pred             HcCChhHHHHHHHHHhhhhCCCcCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076          265 RNGMAFEALELFREMIMESHDLCPNSVT----MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK  340 (662)
Q Consensus       265 ~~g~~~~A~~~~~~m~~~~~~~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  340 (662)
                      -.|+++.|.+-|+.|.  .     |+.|    +..+.-...+.|+.+.|+++-+..-..- +.-.....+++...+..|+
T Consensus       132 ~eG~~~~Ar~kfeAMl--~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gd  203 (531)
T COG3898         132 LEGDYEDARKKFEAML--D-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGD  203 (531)
T ss_pred             hcCchHHHHHHHHHHh--c-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCC
Confidence            3567777777777772  1     2222    2223333346677777777666665442 1124466677788888888


Q ss_pred             hHHHHHHHhhCC-----CCChh--HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhcCCCHHH
Q 006076          341 LELGQCVFDHMD-----KRDVV--SWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSPIS-FVSVLGACSHAGLVEE  409 (662)
Q Consensus       341 ~~~A~~~~~~m~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~  409 (662)
                      ++.|.++.+.-.     ++|+.  .-..|+.+-+.   .-+...|...-.+..+  +.||.+. -..-..++.+.|++.+
T Consensus       204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rK  281 (531)
T COG3898         204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRK  281 (531)
T ss_pred             hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhh
Confidence            888888877544     34433  22223332221   2345566665555554  6777643 3344568899999999


Q ss_pred             HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH--HH--HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076          410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA--AK--IIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL  485 (662)
Q Consensus       410 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~--~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  485 (662)
                      +-.+++.+-+.   .|.+..+...+  +.+.|+....  ..  -+..|+ +.+..+--++..+-...|++..|..-.+.+
T Consensus       282 g~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa  355 (531)
T COG3898         282 GSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAA  355 (531)
T ss_pred             hhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            99999999753   56666544333  3455543221  11  123333 335666777778888999999999999999


Q ss_pred             HhcCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHH
Q 006076          486 FELEPTNAGNYVLLADVYAAA-DMWDEVKRVKRLLE  520 (662)
Q Consensus       486 ~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~  520 (662)
                      ....|. .+.|..|.++-... |+-.++...+-+-.
T Consensus       356 ~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         356 AREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             hhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            999997 57899999887655 88888877776544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.91  E-value=0.0095  Score=54.09  Aligned_cols=97  Identities=16%  Similarity=0.251  Sum_probs=71.2

Q ss_pred             HHHHhhC--CCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC-------------
Q 006076          345 QCVFDHM--DKRDVVSWNSLISSYGV-----HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA-------------  404 (662)
Q Consensus       345 ~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------  404 (662)
                      ...|+..  ..+|-.+|..++..|.+     .|..+=....++.|.+-|+.-|..+|+.||..+=+.             
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3455555  35677777777777764     366777777788888888888888888888876542             


Q ss_pred             ---CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076          405 ---GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK  442 (662)
Q Consensus       405 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  442 (662)
                         .+-+-|++++++|. .+|+-||.+++..+++.+++.+.
T Consensus       114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence               23466788888884 67888888888888888877664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.90  E-value=0.021  Score=45.90  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC-cCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHhCCCCch
Q 006076          255 SWSAMIACYARNGMAFEALELFREMIMESHDL-CPNSVTMVSVLQACAALA--------ALEQGKMIHGYILRRGLDSIL  325 (662)
Q Consensus       255 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~  325 (662)
                      |-...|..+...+++.....+|+.+  ++.|+ .|+..+|+.+|.+.++..        .+-....+++.|+..+++|+.
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqsl--kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~  104 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSL--KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND  104 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHH--HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence            4455677777779999999999999  89999 999999999999876543        345667788999999999999


Q ss_pred             hHHHHHHHHHHh
Q 006076          326 PVVSALVTMYAR  337 (662)
Q Consensus       326 ~~~~~li~~y~~  337 (662)
                      .+|+.++..+.+
T Consensus       105 etYnivl~~Llk  116 (120)
T PF08579_consen  105 ETYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.90  E-value=0.027  Score=51.29  Aligned_cols=117  Identities=16%  Similarity=0.180  Sum_probs=80.0

Q ss_pred             CcCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHH
Q 006076          286 LCPNSVTMVSVLQACA-----ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWN  360 (662)
Q Consensus       286 ~~p~~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~  360 (662)
                      -..|..+|..++..+.     +.|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+           
T Consensus        43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------  109 (228)
T PF06239_consen   43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------  109 (228)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------
Confidence            3456677777777764     346677777788889999999999999999987765 3322 111121           


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH-HHHHHHHHHh
Q 006076          361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV-EEGKMLFESM  417 (662)
Q Consensus       361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~~  417 (662)
                      ++..-|  ..+-+-|++++++|...|+.||..|+..|++.+.+.+.. .+..+..-.|
T Consensus       110 ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm  165 (228)
T PF06239_consen  110 AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM  165 (228)
T ss_pred             HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            111112  234567999999999999999999999999999776643 2333333334

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.86  E-value=0.59  Score=49.70  Aligned_cols=154  Identities=10%  Similarity=0.056  Sum_probs=102.0

Q ss_pred             hccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCC-----CCHhhHHHHHHHHhcCCC
Q 006076           22 IAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPN-----PTQHTYELLLLSCTHHNS   95 (662)
Q Consensus        22 i~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----p~~~~~~~ll~~~~~~~~   95 (662)
                      |+.|. ++++|.+++ -.+.+||.          -|..+.+-|++-+..++++.|..     .-...++.+-..++....
T Consensus       743 i~~~~g~feeaek~y-ld~drrDL----------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~  811 (1189)
T KOG2041|consen  743 ISAFYGEFEEAEKLY-LDADRRDL----------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME  811 (1189)
T ss_pred             HhhhhcchhHhhhhh-hccchhhh----------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            44444 999999999 78888875          57778888999999999983221     124567777777777777


Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhC
Q 006076           96 LSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT  175 (662)
Q Consensus        96 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  175 (662)
                      ++.|.+.+..--.         ....+.+|.+...+++-..+-..+++ |....-.|...+...|..++|.+.|-+--. 
T Consensus       812 We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-  880 (1189)
T KOG2041|consen  812 WEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL-  880 (1189)
T ss_pred             HHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence            7877777654321         12356666666677777666666665 334455677778888888888887765421 


Q ss_pred             CCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHH
Q 006076          176 GTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA  211 (662)
Q Consensus       176 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~  211 (662)
                           |     ...+.+|..+.+    +.+|.++-+
T Consensus       881 -----p-----kaAv~tCv~LnQ----W~~avelaq  902 (1189)
T KOG2041|consen  881 -----P-----KAAVHTCVELNQ----WGEAVELAQ  902 (1189)
T ss_pred             -----c-----HHHHHHHHHHHH----HHHHHHHHH
Confidence                 1     234556666665    666655543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.034  Score=55.15  Aligned_cols=263  Identities=11%  Similarity=0.007  Sum_probs=156.0

Q ss_pred             HHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC-HHHHHHHHHHHHccCC
Q 006076          230 DMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN-SVTMVSVLQACAALAA  305 (662)
Q Consensus       230 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~t~~~ll~a~~~~~~  305 (662)
                      +.+.+..++.+|.+.+....+   .+..-|..-...+..-|++++|+--.+.-.    .++|. +.+..-.-+.+...++
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~----r~kd~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV----RLKDGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe----ecCCCccccccchhhhhhhhHH
Confidence            455666777777777765542   245556677777777788877776665431    22232 2234444444555555


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCChhHHHHHH-HHHHhcCChHHHHHHH
Q 006076          306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-----KRDVVSWNSLI-SSYGVHGYGGKAIQIF  379 (662)
Q Consensus       306 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li-~~~~~~g~~~~A~~~~  379 (662)
                      ..+|.+.++.         ...+           ....|...++.+.     +|...+|..+- .++.-.|+.++|...-
T Consensus       133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence            5555554441         0000           0111111122111     13333444332 3455567777777766


Q ss_pred             HHHHHcCCCCCHhHHHHHHH--HHhcCCCHHHHHHHHHHhHHhcCCCCChHH-------------HHHHHHHHhhcCCHH
Q 006076          380 KEMIYHGVSPSPISFVSVLG--ACSHAGLVEEGKMLFESMRKEHMIRPSVEH-------------YACMVDLLGRANKLE  444 (662)
Q Consensus       380 ~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~  444 (662)
                      -..++.  .++. .+..+++  ++-..++.+.|...|++..+   +.|+-..             +..=.+...+.|++.
T Consensus       193 ~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~  266 (486)
T KOG0550|consen  193 IDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR  266 (486)
T ss_pred             HHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence            655552  2221 1222222  33345667777777776652   3343221             122234567889999


Q ss_pred             HHHHHHHhc-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          445 EAAKIIEDL-RI-----EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       445 ~A~~~~~~m-~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      +|.+.+.+. .+     +|+...|.....+..+.|+.++|+.--+.+++++|.-..+|..-++++...++|++|.+-+++
T Consensus       267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~  346 (486)
T KOG0550|consen  267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK  346 (486)
T ss_pred             HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998876 33     445566766677778889999999999999999988888888888899999999999998887


Q ss_pred             HHhC
Q 006076          519 LEAR  522 (662)
Q Consensus       519 m~~~  522 (662)
                      ..+.
T Consensus       347 a~q~  350 (486)
T KOG0550|consen  347 AMQL  350 (486)
T ss_pred             HHhh
Confidence            7654

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.85  E-value=0.014  Score=59.94  Aligned_cols=74  Identities=20%  Similarity=0.189  Sum_probs=34.6

Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076          330 ALVTMYARCGKLELGQCVFDHMDK----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH  403 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  403 (662)
                      ++|..|.+.|..+.+..++..=..    ||..++|.|++.+.+.|++..|.++..+|..++.-.+..|+..-+.+|.+
T Consensus       108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            444444444444444444443221    44444555555555555555555555555444444444444444444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.84  E-value=0.055  Score=57.93  Aligned_cols=136  Identities=15%  Similarity=0.102  Sum_probs=98.6

Q ss_pred             cCCCCCHhHHHHHHHHHhcC-----CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHH
Q 006076          385 HGVSPSPISFVSVLGACSHA-----GLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRA--------NKLEEAAKII  450 (662)
Q Consensus       385 ~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~  450 (662)
                      .+.+.|...|...+.+....     +..+.|..+|++..+   ..|+ ...|..+..+|...        .++..+.+..
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            34566778888888875543     237799999999986   3675 34455444433221        1234445554


Q ss_pred             Hhc---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          451 EDL---R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       451 ~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      .+.   + ...++..|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|...+++....+.
T Consensus       408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            442   1 2345677888877777889999999999999999994 78999999999999999999999998876543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.81  E-value=0.0021  Score=47.84  Aligned_cols=60  Identities=17%  Similarity=0.260  Sum_probs=34.4

Q ss_pred             cCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHH
Q 006076          403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGS  464 (662)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~  464 (662)
                      ..|++++|.++|+.+....  +.+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            4566666666666665442  335556666666666666666666666666 23455444433

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.79  E-value=0.049  Score=45.41  Aligned_cols=92  Identities=15%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 006076          362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLG  438 (662)
Q Consensus       362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~  438 (662)
                      +..++-..|+.++|+.+|++....|+....  ..+..+.+++...|++++|..+++.....+.-.+ +......+...+.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            455677889999999999999998876653  4667777888899999999999998876531100 2233333455778


Q ss_pred             hcCCHHHHHHHHHhc
Q 006076          439 RANKLEEAAKIIEDL  453 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m  453 (662)
                      ..|+.++|++.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            889999998877543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.78  E-value=1.2  Score=49.04  Aligned_cols=210  Identities=11%  Similarity=0.092  Sum_probs=130.2

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHH--HhCCCchHHHHHHh--cCCC-CCHhhHHHHHHHHhcCCChHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSL--CKQGNLRQALDVLS--IEPN-PTQHTYELLLLSCTHHNSLSDALN  101 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~--~~~~-p~~~~~~~ll~~~~~~~~~~~a~~  101 (662)
                      .+..|.+-. +....+.|..    .|...+.++  .|.|+.++|..+++  .+.+ .|..|...+-..|...+..+++..
T Consensus        24 qfkkal~~~-~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   24 QFKKALAKL-GKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HHHHHHHHH-HHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            445555555 5554444433    255566665  57999999999998  3332 377888888888899999999999


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHhhcCCChH----HHHHHHhcCCCCCcchHHHHHHHHHhc-CCc---------cHHHH
Q 006076          102 VHSHLTDNGFDQDPFLVTKLINVYSHFDSVD----DARHVFDKTRRRTIYVWNALFRALTLA-GRG---------EEVLE  167 (662)
Q Consensus       102 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~  167 (662)
                      ++++....  .|+......+..+|.|.+++.    .|.++++..+++--.-|+. ++...+. ..+         .-|..
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~  175 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEK  175 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHH
Confidence            99998875  466777788888888887665    4677787776654455554 3333332 222         23445


Q ss_pred             HHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHH-HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 006076          168 LYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS-VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFS  246 (662)
Q Consensus       168 l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~  246 (662)
                      .++.+.+.+ |-.-+..-.-.-+..+...+.    .++|..++.. ....-...+...-+--++++.+++++.+-.++-.
T Consensus       176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k----~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  176 MVQKLLEKK-GKIESEAEIILYLLILELQGK----YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHhccC-CccchHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence            566666653 311111111122222334455    8888887743 3333234445555677788888888887666655


Q ss_pred             cCC
Q 006076          247 QMA  249 (662)
Q Consensus       247 ~~~  249 (662)
                      ++.
T Consensus       251 ~Ll  253 (932)
T KOG2053|consen  251 RLL  253 (932)
T ss_pred             HHH
Confidence            544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=1.1  Score=48.40  Aligned_cols=317  Identities=12%  Similarity=0.071  Sum_probs=183.0

Q ss_pred             CCCCChhhHHH-----HHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---HHHHHHHHHcCC
Q 006076          178 GIRSDRFTYTY-----VLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC---VMYAGFVFSQMA  249 (662)
Q Consensus       178 g~~p~~~t~~~-----ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~  249 (662)
                      |++.+..-|..     +++-+...+.    +..|.++-..+-..-... ..++.....-+.+..+   -+-+.++=+++.
T Consensus       427 gIplT~~qy~~l~~~~vi~Rl~~r~~----Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls  501 (829)
T KOG2280|consen  427 GIPLTHEQYRHLSEEVVIDRLVDRHL----YSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS  501 (829)
T ss_pred             CccccHHHHhhhchhhhhHHHHhcch----hHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence            66665555543     3444444444    666666655443111111 4666666666766532   233444444555


Q ss_pred             C--CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC-cC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC---
Q 006076          250 V--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDL-CP---NSVTMVSVLQACAALAALEQGKMIHGYILRRG---  320 (662)
Q Consensus       250 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g---  320 (662)
                      .  .+.++|..+..---+.|+.+-|..+++.=  ...+. .|   +..-+...+.-+...|+.+...+++-.+.+.-   
T Consensus       502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E--~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s  579 (829)
T KOG2280|consen  502 AKLTPGISYAAIARRAYQEGRFELARKLLELE--PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS  579 (829)
T ss_pred             ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcC--CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            4  46678888888888889999998887643  22221 11   22334556667777788777777666554321   


Q ss_pred             --------CCCchhHHHHHHH---------HHHhcCChHHHHHHH--hhCC-----CCChhHHHHHHHHHHhcCC---hH
Q 006076          321 --------LDSILPVVSALVT---------MYARCGKLELGQCVF--DHMD-----KRDVVSWNSLISSYGVHGY---GG  373 (662)
Q Consensus       321 --------~~~~~~~~~~li~---------~y~~~g~~~~A~~~~--~~m~-----~~~~~~~~~li~~~~~~g~---~~  373 (662)
                              .+.....|.-++.         .|- .++-..+...|  +...     ++-..........|++...   .+
T Consensus       580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~  658 (829)
T KOG2280|consen  580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEA  658 (829)
T ss_pred             HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHH
Confidence                    1111122222221         111 11111111111  1100     1111222333444444333   11


Q ss_pred             HH-------HHHHHHHHH-cCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006076          374 KA-------IQIFKEMIY-HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE  445 (662)
Q Consensus       374 ~A-------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  445 (662)
                      +|       +.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-...+     -||-..|-.-+.+++..+++++
T Consensus       659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kwee  733 (829)
T KOG2280|consen  659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEE  733 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHH
Confidence            22       222333322 2334455666777777888899999988876663     4888899999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          446 AAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       446 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      -+++-++++   .+.-|.-+..+|.+.|+.++|...+-+.-.+.        -.+.+|.+.|++.+|.+.--+
T Consensus       734 LekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  734 LEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence            888877764   25567778899999999999988876653322        568899999999999887543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.71  E-value=0.015  Score=57.38  Aligned_cols=129  Identities=12%  Similarity=-0.038  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhH---HhcCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhc-------C-CCCCH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMR---KEHMIR-PSVEHYACMVDLLGRANKLEEAAKIIEDL-------R-IEPGP  459 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~  459 (662)
                      ..|..|.+.|.-.|+++.|+..++.-.   +++|=. .....+..|.+.+.-.|.++.|.+.|+..       + .....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            456666666677789999988776432   333322 13456788889999999999999888754       2 12244


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFE----LE--PTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      .+..+|.++|....+++.|+..+.+-+.    ++  .....++.+|+++|...|..+.|..+.+.-.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5667888888888889999988876543    22  1235688899999999999999988877543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.69  E-value=0.15  Score=53.40  Aligned_cols=230  Identities=11%  Similarity=0.115  Sum_probs=119.0

Q ss_pred             hHHHHHHHHhCCCchHHHHHHhcCCC-----------CCHhhHHHHHHHHhcCCChHHHHHH--HHHHHHhCCCCChhHH
Q 006076           52 KNELIQSLCKQGNLRQALDVLSIEPN-----------PTQHTYELLLLSCTHHNSLSDALNV--HSHLTDNGFDQDPFLV  118 (662)
Q Consensus        52 ~~~li~~~~~~g~~~~A~~~~~~~~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~  118 (662)
                      +.+-+-.|...|.+++|.++-..++.           .+.-.++..=++|.+.++..--+-+  ++.+.+.|-.|+....
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl  638 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL  638 (1081)
T ss_pred             ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence            44466778888888888876553222           1233344455566665554433322  3455666766766543


Q ss_pred             HHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCC
Q 006076          119 TKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSC  198 (662)
Q Consensus       119 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~  198 (662)
                         ...++-.|++.+|.++|.+                  +|.-..|+++|..|+--           . ...-+...++
T Consensus       639 ---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF-----------D-~aQE~~~~g~  685 (1081)
T KOG1538|consen  639 ---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF-----------D-YAQEFLGSGD  685 (1081)
T ss_pred             ---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-----------H-HHHHHhhcCC
Confidence               3344556788888888754                  56667777777776432           0 1112222232


Q ss_pred             CccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 006076          199 GFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFRE  278 (662)
Q Consensus       199 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  278 (662)
                          -++-+.+...--.  ...++.--.+-..++...|+.++|..+.                  ..+|-.+-+.++-++
T Consensus       686 ----~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rk  741 (1081)
T KOG1538|consen  686 ----PKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARK  741 (1081)
T ss_pred             ----hHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhh
Confidence                2222222211111  0111111123344555566666665442                  233333444444333


Q ss_pred             HhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076          279 MIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK  353 (662)
Q Consensus       279 m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~  353 (662)
                      +  .    ..+..+...+..-+-+...+..|-++|..|-+.         .+++++....+++.+|..+-+..++
T Consensus       742 l--d----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  742 L--D----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             c--c----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence            3  1    122333434444444555666666666655332         3467777888888888888888775

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.68  E-value=0.24  Score=43.75  Aligned_cols=64  Identities=11%  Similarity=0.036  Sum_probs=30.5

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006076          288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM  351 (662)
Q Consensus       288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m  351 (662)
                      |+...-..+..+....|+..+|...|++...--+..|..+.-.+.++....+++..|...++.+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l  150 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL  150 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            4444444444555555555555555555444334444444444444444444444444444433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.66  E-value=0.0057  Score=45.57  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=51.3

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHC-NVELAERASKRLFELEP  490 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p  490 (662)
                      +...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3567777888888888888888888876 3344 5667888888888888 68899999999888877

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.65  E-value=0.063  Score=46.61  Aligned_cols=93  Identities=9%  Similarity=-0.005  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC
Q 006076          328 VSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA  404 (662)
Q Consensus       328 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  404 (662)
                      .-++..-+...|++++|.++|+.+..   -+..-|-.|..++...|++++|+..|....... +-|...+-.+..++...
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence            33455556678899999988887653   355678888888888999999999998888854 23456777778888889


Q ss_pred             CCHHHHHHHHHHhHHhc
Q 006076          405 GLVEEGKMLFESMRKEH  421 (662)
Q Consensus       405 g~~~~a~~~~~~~~~~~  421 (662)
                      |+.+.|++.|+......
T Consensus       117 G~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        117 DNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999888877543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.59  E-value=0.26  Score=49.71  Aligned_cols=160  Identities=18%  Similarity=0.104  Sum_probs=99.3

Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCCC---Ch----hHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076          330 ALVTMYARCGKLELGQCVFDHMDKR---DV----VSWNSLISSYGV---HGYGGKAIQIFKEMIYHGVSPSPISFVSVLG  399 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  399 (662)
                      .|+-.|-...+++...++.+.+...   ++    ..--...-++.+   .|+.++|++++..+....-.++..||..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444577777778888887777642   11    111223344555   7888888888888666556677777776665


Q ss_pred             HHhc---------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---Hhc----C---CC
Q 006076          400 ACSH---------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE----EAAKII---EDL----R---IE  456 (662)
Q Consensus       400 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~---~~  456 (662)
                      .|-.         ....++|...+.+.-   .+.|+..+--.++..+...|...    +..++-   ...    +   -.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5432         223666776666543   35566555444444555555322    222222   111    1   23


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      .|-..+.+++.++.-.|+.+.|.+.++++..+.|+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            456667789999999999999999999999998774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.56  E-value=0.011  Score=60.09  Aligned_cols=63  Identities=11%  Similarity=0.063  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGP----KVWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                      +...++.+..+|.+.|++++|+..|++. .+.|+.    .+|..+..+|...|+.++|+..+++++++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556666666666666666666666653 445543    24666666666666666666666666665

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.54  E-value=0.24  Score=47.55  Aligned_cols=174  Identities=12%  Similarity=0.070  Sum_probs=103.5

Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC--CChh-H---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076          330 ALVTMYARCGKLELGQCVFDHMDK--RDVV-S---WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH  403 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~m~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  403 (662)
                      .....+.+.|++++|.+.|+.+..  |+.. .   .-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            344455667888888888887763  3221 1   234556677888888888888888774322222344444444331


Q ss_pred             --CC---------------C---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHH
Q 006076          404 --AG---------------L---VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWG  463 (662)
Q Consensus       404 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~  463 (662)
                        .+               +   ..+|.+.|+.+++.+   |+             ..-..+|...+..+...--..- -
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~  179 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-L  179 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-H
Confidence              11               1   123444444444432   22             2333444443333310000001 1


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          464 SLLGSCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      .+..-|.+.|.+..|..-++.+++.-|+.+   .+...++++|.+.|..++|..+...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            344557888999999999999998877643   466788999999999999999887665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.54  E-value=0.041  Score=45.88  Aligned_cols=85  Identities=16%  Similarity=-0.025  Sum_probs=47.8

Q ss_pred             HHHHhhcCCHHHHHHHHHhc---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 006076          434 VDLLGRANKLEEAAKIIEDL---RIEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPT---NAGNYVLLADVYAA  505 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~  505 (662)
                      ..++-..|+.++|+.+|++.   +....  ...+-.+.+++...|+.++|..++++.....|+   +......+..++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            34455556666666666554   11111  223444556666667777777777666665555   33444445556666


Q ss_pred             cCChHHHHHHHHH
Q 006076          506 ADMWDEVKRVKRL  518 (662)
Q Consensus       506 ~g~~~~A~~~~~~  518 (662)
                      .|+.+||.+.+-.
T Consensus        88 ~gr~~eAl~~~l~  100 (120)
T PF12688_consen   88 LGRPKEALEWLLE  100 (120)
T ss_pred             CCCHHHHHHHHHH
Confidence            6777776665543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.48  E-value=0.028  Score=54.34  Aligned_cols=92  Identities=11%  Similarity=0.037  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDL-RIEPGP----KVWGSLLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLAD  501 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  501 (662)
                      |..-+..+.+.|++++|...|+.+ ...|+.    ..+.-+..+|...|++++|...|+++++..|++   +.++..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            444444444455666666555554 112221    233345556666666666666666666655553   334444556


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q 006076          502 VYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       502 ~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +|...|++++|.++++.+.+
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.42  E-value=0.012  Score=44.36  Aligned_cols=63  Identities=21%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             HHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076          435 DLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV  497 (662)
Q Consensus       435 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  497 (662)
                      ..|.+.+++++|.++++.+ ...| ++..|......+...|++++|...++++++..|+++....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            5677888888888888877 3444 5666777888888889999999999999998887655443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.40  E-value=0.0063  Score=40.57  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD  501 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  501 (662)
                      .+|..+..+|...|++++|++.++++++.+|+|+..+..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467788899999999999999999999999999888777654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.40  E-value=0.88  Score=43.66  Aligned_cols=65  Identities=12%  Similarity=0.082  Sum_probs=34.8

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-H---HHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 006076          252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV-T---MVSVLQACAALAALEQGKMIHGYILRRG  320 (662)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g  320 (662)
                      +...+-.....+.+.|++++|++.|+++  ...  -|+.. .   .-.+..++-+.++++.|...++..++.-
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l--~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEAL--DNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            3333334445556677777777777776  322  23221 1   1233445556666666666666666553

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.24  E-value=2.3  Score=46.01  Aligned_cols=330  Identities=13%  Similarity=0.059  Sum_probs=169.4

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCC---hHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 006076           86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS---VDDARHVFDKTRR--RTIYVWNALFRALTLAG  160 (662)
Q Consensus        86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g  160 (662)
                      ++.-+...+.+..|.++-..+...-... ..++.....-+.+..+   -+.+..+=+++..  ...++|..+.+-.-..|
T Consensus       443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G  521 (829)
T KOG2280|consen  443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG  521 (829)
T ss_pred             hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence            3444555667777777766654321122 5667777777766532   2333444444544  45678888888888889


Q ss_pred             CccHHHHHHHHHhhCCCCC--CCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006076          161 RGEEVLELYRRMNGTGTGI--RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV  238 (662)
Q Consensus       161 ~~~~A~~l~~~m~~~~~g~--~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  238 (662)
                      +++-|..+++.=...+..+  -.+..-+...|.-+...++    .+...++.-++.+.-.         .-+.+.-..+.
T Consensus       522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d----~~Li~~Vllhlk~~~~---------~s~l~~~l~~~  588 (829)
T KOG2280|consen  522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGD----TDLIIQVLLHLKNKLN---------RSSLFMTLRNQ  588 (829)
T ss_pred             cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCC----chhHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence            9988888776322110000  0111223333334444444    4443333333322100         00001111223


Q ss_pred             HHHHHHHHcCCC-CCHhHHHHHHHHHHHcCChhHHHHHHH--HHhh--hhCCCcCCHHHHHHHHHHHHccCCHHHHHH--
Q 006076          239 MYAGFVFSQMAV-KNVVSWSAMIACYARNGMAFEALELFR--EMIM--ESHDLCPNSVTMVSVLQACAALAALEQGKM--  311 (662)
Q Consensus       239 ~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~--~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~--  311 (662)
                      ..|..+|.+... .|..+    +..+-+.++-.+++.-|.  ....  ...+..|+.   ....++|++........+  
T Consensus       589 p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~  661 (829)
T KOG2280|consen  589 PLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKAL  661 (829)
T ss_pred             hhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHH
Confidence            344444444322 12111    111222333333333222  1000  012333333   233444544443211111  


Q ss_pred             --------HHHHHH-HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          312 --------IHGYIL-RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM  382 (662)
Q Consensus       312 --------~~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  382 (662)
                              +.+.+. +.|..-...+.+--+.-+...|+..+|.++-.+.+-||-..|--=+.+++..+++++-+++-+.+
T Consensus       662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk  741 (829)
T KOG2280|consen  662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK  741 (829)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence                    111111 12222222233334445666788888999888888888888888888888888888776665554


Q ss_pred             HHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076          383 IYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED  452 (662)
Q Consensus       383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  452 (662)
                      .      .+.-|.-...+|.+.|+.++|.+++.+..   |.   .    -.+.+|.+.|++.+|.++--+
T Consensus       742 k------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  742 K------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             C------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence            3      14566777888999999999988876552   11   1    567888888888888776544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.37  Score=45.09  Aligned_cols=164  Identities=9%  Similarity=-0.009  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 006076          328 VSALVTMYARCGKLELGQCVFDHMDK----------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV  397 (662)
Q Consensus       328 ~~~li~~y~~~g~~~~A~~~~~~m~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  397 (662)
                      +++|+..|.-..-+++-...|+.-..          +-...-+.++..+.-.|.+.-.+.++++..+...+-+......+
T Consensus       139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L  218 (366)
T KOG2796|consen  139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL  218 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence            45566666555445554444443322          12233456666677778888888888888886555566777778


Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHh
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHM----IRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI-EP-GPKVWGSLLGSCRI  471 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~  471 (662)
                      .+.-.+.|+.+.|..+|+...+..+    +.-...+.......|.-++++.+|...+.+.+. .| |+..-|.-.-...-
T Consensus       219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY  298 (366)
T KOG2796|consen  219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY  298 (366)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence            8888889999999999987754432    222233333344455566677777777766632 22 33333333333334


Q ss_pred             cCCHHHHHHHHHHHHhcCCC
Q 006076          472 HCNVELAERASKRLFELEPT  491 (662)
Q Consensus       472 ~g~~~~a~~~~~~~~~~~p~  491 (662)
                      .|+...|.+..+.+.+..|.
T Consensus       299 lg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  299 LGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHHHHHHHHHhccCCc
Confidence            46677777777777777765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.14  E-value=0.09  Score=50.89  Aligned_cols=98  Identities=10%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC----CHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP----GPKVWG  463 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~  463 (662)
                      .|...+....+.|++++|...|+.+.+.+   |+    ...+..+...|...|++++|...|+.+ ...|    ....+-
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34444433344567777777777776543   32    245566677777777777777777766 1122    234444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          464 SLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      .+...+...|+.+.|...++++++..|++.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            556667788888888888888888888753

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.34  Score=45.30  Aligned_cols=225  Identities=8%  Similarity=0.001  Sum_probs=117.5

Q ss_pred             cchHHHHHHHHHhcCCccHHHHHHHHHhhCC---------CCCCCChhhHHHHHHHHHhCCCCccchHHH-HHHHHHHHH
Q 006076          146 IYVWNALFRALTLAGRGEEVLELYRRMNGTG---------TGIRSDRFTYTYVLKACVASSCGFSLLKHG-KEIHASVLR  215 (662)
Q Consensus       146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---------~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a-~~~~~~~~~  215 (662)
                      ...|+.-+..+++....++|..-+....+.+         |.+-||..            |   ..+.-+ +-+|.++.+
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rr------------G---SmVPFsmR~lhAe~~~  133 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRR------------G---SMVPFSMRILHAELQQ  133 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCc------------C---ccccHHHHHHHHHHHH
Confidence            3456666777777777777765555554331         01222211            1   112222 334444443


Q ss_pred             hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC--CH--------hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCC
Q 006076          216 HGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK--NV--------VSWSAMIACYARNGMAFEALELFREMIMESHD  285 (662)
Q Consensus       216 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  285 (662)
                      .-    ..-+++|...|.-..-+++-.+.|+.-..+  .+        ..-+.++..+.-.|.+.-.+.++++.  ....
T Consensus       134 ~l----gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~v--i~~~  207 (366)
T KOG2796|consen  134 YL----GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSV--IKYY  207 (366)
T ss_pred             hc----CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHH--HHhC
Confidence            31    123566777666555555555555543221  22        22345555566666666677777776  3433


Q ss_pred             CcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCChHHHHHHHhhCCC---CChh
Q 006076          286 LCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS-----ALVTMYARCGKLELGQCVFDHMDK---RDVV  357 (662)
Q Consensus       286 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~li~~y~~~g~~~~A~~~~~~m~~---~~~~  357 (662)
                      -+.++.....+.+.-.+.|+.+.|...++...+..-..+....+     .....|.-.+++..|...|.+++.   .|++
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            34455556666666667777777777777665543222222222     223334455666666666666653   3444


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS  393 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  393 (662)
                      .-|.=.-+..-.|+..+|++....|..  ..|...+
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l  321 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL  321 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence            444444444445666777777777766  3444433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.96  E-value=0.099  Score=44.10  Aligned_cols=50  Identities=10%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      ..|+..+..+++.+++..|++..|.++.+...+.++++-+...|..|+.-
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            45666666666666666666666666666666666665555556555543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.95  E-value=1.4  Score=41.01  Aligned_cols=61  Identities=13%  Similarity=0.028  Sum_probs=27.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 006076          259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR  319 (662)
Q Consensus       259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  319 (662)
                      ....+.+.|++++|.+.|+.+...-.+-+--......+..++-+.|+++.|...++..++.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3344555666666666666663111111111222333444455555555555555555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.87  E-value=2.2  Score=42.53  Aligned_cols=287  Identities=16%  Similarity=0.077  Sum_probs=160.4

Q ss_pred             HHHHHHHHHh--cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhH--
Q 006076          149 WNALFRALTL--AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI--  224 (662)
Q Consensus       149 ~~~li~~~~~--~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--  224 (662)
                      |.+|-.|+..  .|+-..|.++-.+-...   +..|...+..+|.+-+..-  .|+.+.+++-|+.|...   |....  
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~--eG~~~~Ar~kfeAMl~d---PEtRllG  156 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALL--EGDYEDARKKFEAMLDD---PETRLLG  156 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHh--cCchHHHHHHHHHHhcC---hHHHHHh
Confidence            3344444433  35555555555544332   4455556666665544321  12277777777766632   11111  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHH--HHHHHHH
Q 006076          225 MTTLIDMYARFGCVMYAGFVFSQMAVK---NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVT--MVSVLQA  299 (662)
Q Consensus       225 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t--~~~ll~a  299 (662)
                      ...|.----+.|..+.|...-+..-..   -...|.+.+...+..|+++.|+++++.-. ...-+.++..-  -..+|.+
T Consensus       157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~-~~~vie~~~aeR~rAvLLtA  235 (531)
T COG3898         157 LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR-AAKVIEKDVAERSRAVLLTA  235 (531)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhhchhhHHHHHHHHHHH
Confidence            111222223557777776666554322   34567788888899999999999888763 23334555432  2223332


Q ss_pred             HH--c-cCCHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChH
Q 006076          300 CA--A-LAALEQGKMIHGYILRRGLDSILPV-VSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGG  373 (662)
Q Consensus       300 ~~--~-~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~  373 (662)
                      -+  . ..+...|+..-.+..+  +.||..- -..-...|.+.|++.++-++++.+-+  |.+..|.  +-.+.+.|+  
T Consensus       236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--  309 (531)
T COG3898         236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--  309 (531)
T ss_pred             HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--
Confidence            21  1 1244555555544444  3444322 22335678888888888888888753  4443332  223344444  


Q ss_pred             HHHHHHHHHHH-cCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-CCHHHHHHHH
Q 006076          374 KAIQIFKEMIY-HGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA-NKLEEAAKII  450 (662)
Q Consensus       374 ~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~  450 (662)
                      .++.-+++... ..++||. .+...+..+-...|++..|+.--+....   ..|....|..|.+.-... |+-.++...+
T Consensus       310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wl  386 (531)
T COG3898         310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWL  386 (531)
T ss_pred             cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence            44444444433 2256654 5666677777788888887776666543   467788888777766444 7888888777


Q ss_pred             Hhc
Q 006076          451 EDL  453 (662)
Q Consensus       451 ~~m  453 (662)
                      .+.
T Consensus       387 Aqa  389 (531)
T COG3898         387 AQA  389 (531)
T ss_pred             HHH
Confidence            765

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.78  E-value=0.95  Score=37.71  Aligned_cols=139  Identities=13%  Similarity=0.090  Sum_probs=81.2

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076          368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA  447 (662)
Q Consensus       368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  447 (662)
                      -.|..++..++..+.....   +..-++.++--....-+-+-..+.++.+-+.+.+              ..+|++....
T Consensus        14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi   76 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI   76 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred             HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence            3566667777776665532   3344444444333334444445555555333222              2455555555


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076          448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ  525 (662)
Q Consensus       448 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  525 (662)
                      ..+-.++  .+......-+......|+.+.-.+++..+...+..+|....-++.+|.+.|...++.+++++.-++|++
T Consensus        77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            5555543  234445566778888999999888988888655556889999999999999999999999999999874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.73  E-value=0.019  Score=43.95  Aligned_cols=61  Identities=11%  Similarity=0.086  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFEL----EPT---NAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      .+++.+...|...|++++|+..+++++++    +++   -..++..++.+|...|++++|.+.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566666677777777777777766543    221   23466677888888888888888777654

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.60  E-value=0.059  Score=47.22  Aligned_cols=61  Identities=25%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ....++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++++.+..
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4556777788899999999999999999999999999999999999999999999998764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.56  E-value=0.13  Score=43.42  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=32.2

Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHH
Q 006076          422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPGPKVWGSLLGSCR  470 (662)
Q Consensus       422 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~  470 (662)
                      .+.|+..+..+++.+|+..|++..|+++++..    +++-+..+|..|+.=+.
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            35567777777777777777777777776654    44445667776665443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.14  Score=51.19  Aligned_cols=63  Identities=13%  Similarity=0.034  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ..++..|..+|.+.+++..|+...++.++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            345667777888999999999999999999999999999999999999999999999999886

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.46  E-value=0.28  Score=48.76  Aligned_cols=128  Identities=17%  Similarity=0.024  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCC-------CC--Ch
Q 006076          291 VTMVSVLQACAALAALEQGKMIHGYILR----RGLD-SILPVVSALVTMYARCGKLELGQCVFDHMD-------KR--DV  356 (662)
Q Consensus       291 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~--~~  356 (662)
                      ..|..+-+.|.-+|+++.|...|+.-+.    .|-. .....+..|.++|.-.|+++.|.+.|+...       .+  ..
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            3455666666677888888887765432    2321 234566778888888899998888776532       23  23


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIY----HG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMR  418 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  418 (662)
                      .+.-+|...|.-...+++|+.++.+-+.    .+ ..-....+-+|..++...|..++|..+.+.-.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4566788888888888888888765432    11 12234667788888888898888887766543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.42  E-value=0.03  Score=42.80  Aligned_cols=60  Identities=13%  Similarity=0.123  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhc-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076          428 EHYACMVDLLGRANKLEEAAKIIEDL-------R-IEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       428 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                      .+|+.+...|.+.|++++|++.|++.       + ..|+ ..++..+...+...|+.++|+..+++.++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34555555666666666665555543       1 1122 34566666677777777777777776654

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=3.7  Score=41.35  Aligned_cols=85  Identities=16%  Similarity=0.026  Sum_probs=49.2

Q ss_pred             HHhcCChHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 006076          366 YGVHGYGGKAIQIFKEMIYH---GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRAN  441 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g  441 (662)
                      ..++|++.+|.+.|.+.+..   +..|+...|.....+..+.|+.++|+.--+...+   +.|. +..|-.-..++.-.+
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le  335 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE  335 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777652   2333444555555666777777777776666642   2221 122222233444556


Q ss_pred             CHHHHHHHHHhc
Q 006076          442 KLEEAAKIIEDL  453 (662)
Q Consensus       442 ~~~~A~~~~~~m  453 (662)
                      +|++|.+-+++.
T Consensus       336 ~~e~AV~d~~~a  347 (486)
T KOG0550|consen  336 KWEEAVEDYEKA  347 (486)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.28  E-value=1.1  Score=41.72  Aligned_cols=161  Identities=16%  Similarity=0.092  Sum_probs=80.8

Q ss_pred             HHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhc---
Q 006076          335 YARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSH---  403 (662)
Q Consensus       335 y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~---  403 (662)
                      +...|++++|.+.|+.+..  |+    ..+.-.++.++.+.|++++|...|+++.+.  -|+.  ..+...+.+.+.   
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHh
Confidence            4455666666666665542  11    123444556666667777777777666653  2222  222222222211   


Q ss_pred             ----------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 006076          404 ----------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC  473 (662)
Q Consensus       404 ----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g  473 (662)
                                .+...+|...|+.+.                .-|=......+|...+..+...--.. --.+..-|.+.|
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~~  155 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELRNRLAEH-ELYIARFYYKRG  155 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred             CccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc
Confidence                      111223333444333                33333344445544444332000000 112445678888


Q ss_pred             CHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChHHHHH
Q 006076          474 NVELAERASKRLFELEPTNAG---NYVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       474 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~  514 (662)
                      .+..|..-++.+++.-|+.+.   +...|+..|.+.|..+.|..
T Consensus       156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            999999999999988887543   45678888889988875443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.03  E-value=0.21  Score=47.15  Aligned_cols=102  Identities=20%  Similarity=0.155  Sum_probs=83.2

Q ss_pred             hHHHHHHHhhCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC--------
Q 006076          341 LELGQCVFDHMD--KRDVVSWNSLISSYGVH-----GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG--------  405 (662)
Q Consensus       341 ~~~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--------  405 (662)
                      +-..++.|....  ++|-.+|-+++..|..+     +.++-....++.|.+-|+.-|..+|..||+.+-+..        
T Consensus        50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ  129 (406)
T KOG3941|consen   50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ  129 (406)
T ss_pred             ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence            344567788777  68889999999988754     566667778899999999999999999999876542        


Q ss_pred             --------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006076          406 --------LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL  443 (662)
Q Consensus       406 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  443 (662)
                              .-+-++.+++.| +.+|+.||-++-..|++++++.|..
T Consensus       130 ~~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  130 KVFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence                    234578899999 4789999999999999999998864

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.03  E-value=0.15  Score=52.03  Aligned_cols=61  Identities=15%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV----EHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      +...++.+..+|.+.|++++|...|+...+   +.|+.    ..|..+..+|...|++++|++.+++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            346777777888888888888888888764   35653    24778888888888888888887776

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.42  Score=46.00  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=16.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      |...|-.|...|...|+++.|...|.+..+
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r  184 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALR  184 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            444555555555555555555555555554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.90  E-value=6.2  Score=41.84  Aligned_cols=418  Identities=11%  Similarity=0.052  Sum_probs=222.2

Q ss_pred             CCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH
Q 006076           41 STTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTY-ELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFL  117 (662)
Q Consensus        41 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  117 (662)
                      ..+....+.  |+++|.---+....+.+...+.  -...|..+-| -....-=.+.|..+.+.++|++-+.. ++.....
T Consensus        39 ~~~~~~f~~--wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~Svdl  115 (577)
T KOG1258|consen   39 SNDSLDFDA--WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDL  115 (577)
T ss_pred             ccchhcccc--hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHH
Confidence            344444444  6667765544444444444554  2334554443 33333445678889999999988864 6677777


Q ss_pred             HHHHHHHhh-cCCChHHHHHHHhcCCC------CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHH
Q 006076          118 VTKLINVYS-HFDSVDDARHVFDKTRR------RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL  190 (662)
Q Consensus       118 ~~~li~~y~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll  190 (662)
                      |...+.... ..|+.+..++.|+....      .....|...|.--..++++.....+|++.++.     | ..-|+...
T Consensus       116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-----P-~~~~~~~f  189 (577)
T KOG1258|consen  116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-----P-LHQLNRHF  189 (577)
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-----h-hhHhHHHH
Confidence            777776655 45777777888876543      24567888888888889999999999999865     1 12222222


Q ss_pred             HHHHhCCCC-----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 006076          191 KACVASSCG-----FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGC-VMYAGFVFSQMAVKNVVSWSAMIACYA  264 (662)
Q Consensus       191 ~~~~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~~~~~~~~~li~~~~  264 (662)
                      .-+.+.-+.     .-..++..++-.......             .-...+. .+.-....+....+             
T Consensus       190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~-------------  243 (577)
T KOG1258|consen  190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDP-------------  243 (577)
T ss_pred             HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCc-------------
Confidence            222111000     000122221111111100             0000000 11111111111111             


Q ss_pred             HcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHh
Q 006076          265 RNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG-------LDSILPVVSALVTMYAR  337 (662)
Q Consensus       265 ~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-------~~~~~~~~~~li~~y~~  337 (662)
                       .+..+++.....+..  .           .--.++-........+..++.-+++-       ..++..+|...++.-.+
T Consensus       244 -s~~l~~~~~~l~~~~--~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~  309 (577)
T KOG1258|consen  244 -SKSLTEEKTILKRIV--S-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEIT  309 (577)
T ss_pred             -cchhhHHHHHHHHHH--H-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhh
Confidence             011111111111110  0           00000111111112222222222221       12345677777777778


Q ss_pred             cCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          338 CGKLELGQCVFDHMDKRD---VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      .|+.+.+.-+|++..-|-   ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+-..|+.+.|..++
T Consensus       310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~l  389 (577)
T KOG1258|consen  310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVIL  389 (577)
T ss_pred             cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHH
Confidence            888888888888776432   22344444444444888877777766655433222222222222345678999999999


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH---HHHHhc-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHH
Q 006076          415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA---KIIEDL-RIEPGPKVWGSLLG-----SCRIHCNVELAERASKRL  485 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~  485 (662)
                      +.+..+.  +--+..-..-+....+.|..+.+.   +++... +.+-+..+...+.-     -+...++.+.|..++.++
T Consensus       390 q~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~  467 (577)
T KOG1258|consen  390 QRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEA  467 (577)
T ss_pred             HHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            9997653  223444455567778888888888   454443 21223222222222     244567899999999999


Q ss_pred             HhcCCCCcchHHHHHHHHHhcCCh
Q 006076          486 FELEPTNAGNYVLLADVYAAADMW  509 (662)
Q Consensus       486 ~~~~p~~~~~~~~l~~~~~~~g~~  509 (662)
                      .+..|++...|..+++.....+..
T Consensus       468 ~~~~~~~k~~~~~~~~~~~~~~~~  491 (577)
T KOG1258|consen  468 NDILPDCKVLYLELIRFELIQPSG  491 (577)
T ss_pred             hhcCCccHHHHHHHHHHHHhCCcc
Confidence            999999988999988888766633

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.75  E-value=0.24  Score=46.95  Aligned_cols=82  Identities=17%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             hcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCC
Q 006076          439 RANKLEEAAKIIEDL-------RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT---NAGNYVLLADVYAAADM  508 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~  508 (662)
                      +.|++.+|..-|...       ...|+...|  |..++...|+++.|...|..+.+-.|+   -+..+.-|+....+.|+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~  230 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN  230 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence            344455555555543       134556666  666677777777777777777665544   34556666777777777


Q ss_pred             hHHHHHHHHHHHhC
Q 006076          509 WDEVKRVKRLLEAR  522 (662)
Q Consensus       509 ~~~A~~~~~~m~~~  522 (662)
                      .++|..+++++.++
T Consensus       231 ~d~A~atl~qv~k~  244 (262)
T COG1729         231 TDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777776653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=0.61  Score=46.69  Aligned_cols=138  Identities=13%  Similarity=0.022  Sum_probs=97.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076          363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK  442 (662)
Q Consensus       363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  442 (662)
                      ...|.+.|++..|...|++....  -+           +...-+.++.....         ..-..+++.|.-.|.+.++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~  272 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE  272 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence            45677778888888877776552  00           01111112222211         1124467788889999999


Q ss_pred             HHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH-HHHHHHH
Q 006076          443 LEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV-KRVKRLL  519 (662)
Q Consensus       443 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m  519 (662)
                      +.+|+..-+.. .. ++|....--=..+|...|+++.|+..|+++++++|+|-.+-.-|+.+-.+..+..+. .++|..|
T Consensus       273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888766 33 457777767788999999999999999999999999988888888887777666655 7788888


Q ss_pred             HhC
Q 006076          520 EAR  522 (662)
Q Consensus       520 ~~~  522 (662)
                      -.+
T Consensus       353 F~k  355 (397)
T KOG0543|consen  353 FAK  355 (397)
T ss_pred             hhc
Confidence            653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.67  E-value=3.7  Score=38.21  Aligned_cols=195  Identities=17%  Similarity=0.106  Sum_probs=116.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMD-----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG  399 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  399 (662)
                      ..........+...+.+..+...+....     ......+..+...+...++...+.+.+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            3455555666666666666666655543     23334555555566666666777777776665332221 11222222


Q ss_pred             -HHhcCCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHhcC
Q 006076          400 -ACSHAGLVEEGKMLFESMRKEHMI--RPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG--PKVWGSLLGSCRIHC  473 (662)
Q Consensus       400 -a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g  473 (662)
                       ++...|+++.+...+..... ..-  ......+......+...++.++|...+.+. ...|+  ...+..+...+...+
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence             56677777777777777643 110  112333444444466677777777777766 22333  566677777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +.+.+...+.......|.....+..+...+...|.++++...+.....
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            788888888888877776445566666666666677777777776654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.66  E-value=0.4  Score=39.70  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             HHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---cchHHHHHHHHHhcCC
Q 006076          435 DLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELE-PTN---AGNYVLLADVYAAADM  508 (662)
Q Consensus       435 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~  508 (662)
                      -+++..|++++|++.|.+. .+- .....||.-..+++-.|+.++|+.-+++++++. |..   ..+|+.-+.+|-..|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            4567788888888888776 223 367788888888888999999999888888865 332   2356667778888899


Q ss_pred             hHHHHHHHHHHHhCCC
Q 006076          509 WDEVKRVKRLLEARGL  524 (662)
Q Consensus       509 ~~~A~~~~~~m~~~~~  524 (662)
                      -+.|..=|+...+.|-
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            9999888887776553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.63  E-value=1  Score=38.51  Aligned_cols=59  Identities=24%  Similarity=0.166  Sum_probs=38.4

Q ss_pred             HHhhcCCHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076          436 LLGRANKLEEAAKIIEDL----RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG  494 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  494 (662)
                      ...+.|++++|.+.|+.+    |..| ....--.|+.++...+++++|...+++.++++|.++.
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            344566777777777666    2222 2334445777777888888888888888888776543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.47  E-value=9.2  Score=41.86  Aligned_cols=75  Identities=9%  Similarity=0.009  Sum_probs=44.2

Q ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccH
Q 006076           88 LSCTHHNSLSDALNVHSHLTDNGFDQ---DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEE  164 (662)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~  164 (662)
                      ..+.+.+.+++|..+-.....  ..|   ...++...|..|.-.|++++|-...-.|...+..-|.--+.-++..++...
T Consensus       364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~  441 (846)
T KOG2066|consen  364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD  441 (846)
T ss_pred             HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence            334444555555544433222  222   234566667777777777777777777777777777777766666666543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.38  E-value=0.47  Score=41.43  Aligned_cols=68  Identities=19%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH----HhcCCCCChHH
Q 006076          361 SLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR----KEHMIRPSVEH  429 (662)
Q Consensus       361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~  429 (662)
                      .++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+.    ++.|+.|+..+
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34444555555555555555555531 2234455555555555555555555555442    23345554443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.25  E-value=2.6  Score=40.59  Aligned_cols=122  Identities=15%  Similarity=0.073  Sum_probs=85.6

Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHH---HHHHHHhcCCHH
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGS---LLGSCRIHCNVE  476 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~  476 (662)
                      .....|+..++...|.......  +-+...-..|+..|...|+.++|..++..+|.+-...-|..   -|....+..+..
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            4556788888888888886542  33466777888999999999999999999875443333333   222333333333


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      +... +++-...+|+|...-..|+..|...|+.++|.+.+=.+..++.
T Consensus       221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            2222 3344556899999999999999999999999998877776543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.18  E-value=7.5  Score=39.67  Aligned_cols=133  Identities=15%  Similarity=0.112  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD  435 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  435 (662)
                      ..|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+...|..+|+.-...+  +.+..--+..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence            456777777777777888999999999988 6677788888887665 578888999998766543  333444456677


Q ss_pred             HHhhcCCHHHHHHHHHhc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          436 LLGRANKLEEAAKIIEDL--RIEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      .+.+.++-+.|..+|+..  .+..+  ..+|..+|.--...|+...+..+-+++.++-|..
T Consensus       475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            788899999999999855  22333  5678888888888899998988888888888863

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.73  E-value=4.4  Score=43.17  Aligned_cols=159  Identities=18%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----hHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHH
Q 006076          360 NSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSP-----ISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEH  429 (662)
Q Consensus       360 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (662)
                      ..++....=.|+-+.+++++.+-.+.+ +.-..     .+|..++..+..    ....+.+.++++.+.+++   |+...
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l  268 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL  268 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence            344555555677777777776654422 22111     233334443332    457889999999998764   66555


Q ss_pred             HHH-HHHHHhhcCCHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHH
Q 006076          430 YAC-MVDLLGRANKLEEAAKIIEDLRI------EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV-LLAD  501 (662)
Q Consensus       430 ~~~-li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~  501 (662)
                      |.. -...+...|++++|++.|++.-.      +-....+--+...+....++++|...+.++.+.+.-+...|. ..+-
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            433 34667788999999999997521      112333444566677889999999999999987655455554 4555


Q ss_pred             HHHhcCCh-------HHHHHHHHHHHh
Q 006076          502 VYAAADMW-------DEVKRVKRLLEA  521 (662)
Q Consensus       502 ~~~~~g~~-------~~A~~~~~~m~~  521 (662)
                      +|...|+.       ++|.+++++.+.
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            66788888       888888888775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.56  E-value=9.5  Score=38.75  Aligned_cols=72  Identities=14%  Similarity=0.020  Sum_probs=48.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCC---CH----hHHHHHHHHHHH---cCChhHHHHHHHHHhhhhCCCcCCHHHHHHH
Q 006076          227 TLIDMYARFGCVMYAGFVFSQMAVK---NV----VSWSAMIACYAR---NGMAFEALELFREMIMESHDLCPNSVTMVSV  296 (662)
Q Consensus       227 ~li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~l  296 (662)
                      .|+-.|-...+++...++.+.++..   ++    ..--....++.+   .|+.++|++++..+  ......+++.||..+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~--l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV--LESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH--HhccCCCChHHHHHH
Confidence            4455688888999999999988753   11    112233445666   78999999999886  344455677777766


Q ss_pred             HHHH
Q 006076          297 LQAC  300 (662)
Q Consensus       297 l~a~  300 (662)
                      ...|
T Consensus       224 GRIy  227 (374)
T PF13281_consen  224 GRIY  227 (374)
T ss_pred             HHHH
Confidence            6554

>PRK11906 transcriptional regulator; Provisional

Probab=93.55  E-value=1.6  Score=45.03  Aligned_cols=62  Identities=10%  Similarity=-0.082  Sum_probs=37.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL  519 (662)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  519 (662)
                      |+.....+..+....++.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44444445454455555666666666666666666666666666666666666666666553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.47  E-value=0.15  Score=31.42  Aligned_cols=32  Identities=22%  Similarity=0.175  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      .+|..+...+...|++++|+..++++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46777888888888888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.45  E-value=2.4  Score=44.52  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=74.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh
Q 006076          293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG  372 (662)
Q Consensus       293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~  372 (662)
                      ...++.-+.+.|..+.|.++-..-.            .-.+...++|+++.|.++.++..  +...|..|.....++|++
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~  363 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI  363 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence            4455555556666666655533211            12344567788888877766554  555788888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076          373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED  452 (662)
Q Consensus       373 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  452 (662)
                      +-|.+.|.+..+         |..|+--|.-.|+.+.-.++-+......       -++.....+.-.|+.++..+++.+
T Consensus       364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888776433         3445555566677666555555443221       133334444455666666666665


Q ss_pred             cC
Q 006076          453 LR  454 (662)
Q Consensus       453 m~  454 (662)
                      .+
T Consensus       428 ~~  429 (443)
T PF04053_consen  428 TG  429 (443)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.22  E-value=2.3  Score=41.91  Aligned_cols=121  Identities=12%  Similarity=0.072  Sum_probs=61.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCCHHHHH--
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEHMIRP----SVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPGPKVWG--  463 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~--  463 (662)
                      +..|+...+.++++++.|+...+-..-..    ...+|..|...|++..++++|.-+..+.       +++.=..-|.  
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            44455555566666666665543211111    2345666666676666666665443332       2111111122  


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHHhc--CCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 006076          464 ---SLLGSCRIHCNVELAERASKRLFEL--EPT----NAGNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       464 ---~ll~~~~~~g~~~~a~~~~~~~~~~--~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                         -|.-+++..|....|.+.-++..++  ...    .......++++|-..|+.|.|..-++
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe  270 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE  270 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence               2334566666666666666655442  111    22334456677777776666665554

>PRK11906 transcriptional regulator; Provisional

Probab=93.20  E-value=8.2  Score=39.98  Aligned_cols=159  Identities=9%  Similarity=0.029  Sum_probs=104.1

Q ss_pred             hHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-cCCCCCHh-HHHHHHHHHh---------cCCCHHHHHHHHHHhH
Q 006076          357 VSW--NSLISSYGVHG-----YGGKAIQIFKEMIY-HGVSPSPI-SFVSVLGACS---------HAGLVEEGKMLFESMR  418 (662)
Q Consensus       357 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~  418 (662)
                      ..|  ...+.|.....     ..+.|+.+|.+... +.+.|+.. .|..+..++.         ...+..+|.+.-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  55555544411     34578888888872 23666643 3333322221         1234556777777666


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-
Q 006076          419 KEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN-  495 (662)
Q Consensus       419 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-  495 (662)
                      +..  +-|......+..++.-.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.+++.++++|.-..+ 
T Consensus       332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence            432  346777777888888888899999999988 45564 4566666666778899999999999999999975433 


Q ss_pred             -HHHHHHHHHhcCChHHHHHHHHH
Q 006076          496 -YVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       496 -~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                       .-..+++|+.. .+++|.+++-+
T Consensus       410 ~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        410 VIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHcCC-chhhhHHHHhh
Confidence             33445567654 46777777653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.05  E-value=0.27  Score=30.17  Aligned_cols=33  Identities=27%  Similarity=0.271  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      ..|..+...+...|++++|+..++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            346667777777788888888888887777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=8.1  Score=36.17  Aligned_cols=198  Identities=15%  Similarity=0.096  Sum_probs=110.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--hhHHHHHHHHHHhcC
Q 006076          293 MVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRD--VVSWNSLISSYGVHG  370 (662)
Q Consensus       293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g  370 (662)
                      |.....+|....+++++...+..+.+. .+.+...|.       ....++.|.-+.++|.+-+  +..|+--...|.++|
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G  105 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG  105 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence            334445566677777777766655532 121221111       1233444555555554322  224555667777777


Q ss_pred             ChHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc----CCCCChHHHHHHHHHHhhcCCHH
Q 006076          371 YGGKAIQIFKEMIY--HGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH----MIRPSVEHYACMVDLLGRANKLE  444 (662)
Q Consensus       371 ~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~  444 (662)
                      ..+-|-..+++.-+  .++.|                  ++|++++++.....    ....-...|......|.+..+++
T Consensus       106 spdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~  167 (308)
T KOG1585|consen  106 SPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT  167 (308)
T ss_pred             CcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence            77766666655433  12344                  44444444332211    01112345566667788888888


Q ss_pred             HHHHHHHhcC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHhcCChHHH
Q 006076          445 EAAKIIEDLR-------IEPGP-KVWGSLLGSCRIHCNVELAERASKRLFE----LEPTNAGNYVLLADVYAAADMWDEV  512 (662)
Q Consensus       445 ~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A  512 (662)
                      ||-..|.+-.       .-|+. ..+-+.|-.+.-..++..|+..++.-.+    ..|++..+...|+..| ..|+.+++
T Consensus       168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~  246 (308)
T KOG1585|consen  168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI  246 (308)
T ss_pred             HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence            8776665542       12222 2345555566666788888888887654    3466677777787777 47888887


Q ss_pred             HHHHH
Q 006076          513 KRVKR  517 (662)
Q Consensus       513 ~~~~~  517 (662)
                      .++..
T Consensus       247 ~kvl~  251 (308)
T KOG1585|consen  247 KKVLS  251 (308)
T ss_pred             HHHHc
Confidence            77654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.84  E-value=5.7  Score=34.20  Aligned_cols=40  Identities=18%  Similarity=0.138  Sum_probs=17.9

Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 006076          330 ALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVH  369 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~  369 (662)
                      .+|..+.+.+........++.+..   .+....|.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            344444444455555554444432   1233444555555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.78  E-value=4.4  Score=34.75  Aligned_cols=18  Identities=22%  Similarity=0.193  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 006076          475 VELAERASKRLFELEPTN  492 (662)
Q Consensus       475 ~~~a~~~~~~~~~~~p~~  492 (662)
                      ...|...|+++++.-|++
T Consensus       115 ~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHHHHHHCcCC
Confidence            557777888888888875

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=1.5  Score=42.67  Aligned_cols=159  Identities=10%  Similarity=-0.024  Sum_probs=113.9

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHhhcCCH
Q 006076          368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM----VDLLGRANKL  443 (662)
Q Consensus       368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~  443 (662)
                      -+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++...  ..|+...|..+    .-++..+|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            478888888889888875 5667777877788999999999999999888643  35665555443    3445688999


Q ss_pred             HHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 006076          444 EEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT----NAGNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       444 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                      ++|++.-++. .+.| |...-.++.......|+..++.++..+-...=..    -.-.|-..+-.+...+.++.|+++|+
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999998876 4444 5566667777788889999998887665432111    12245556666777899999999998


Q ss_pred             HHHhCCCcCCCc
Q 006076          518 LLEARGLQKVPG  529 (662)
Q Consensus       518 ~m~~~~~~~~~~  529 (662)
                      .=.-+.+.++.+
T Consensus       272 ~ei~k~l~k~Da  283 (491)
T KOG2610|consen  272 REIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhhccch
Confidence            765555555444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.39  E-value=3.4  Score=43.43  Aligned_cols=158  Identities=11%  Similarity=0.101  Sum_probs=98.6

Q ss_pred             HHHHHhCCCchHHHHHHh-cCCC--CCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChH
Q 006076           56 IQSLCKQGNLRQALDVLS-IEPN--PTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD  132 (662)
Q Consensus        56 i~~~~~~g~~~~A~~~~~-~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  132 (662)
                      -....-+|+++++.+... ...-  -+..-.+.++.-+-+.|..+.|.++-.         |+   ..-.....++|+++
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~  335 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD  335 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence            345566888999766665 1111  124457778888888898888887643         32   22345666899999


Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHH
Q 006076          133 DARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHAS  212 (662)
Q Consensus       133 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~  212 (662)
                      .|.++-++..  +...|..|.....+.|+++-|.+.|.+...           |..++-.+...|+    .+.-.++...
T Consensus       336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~----~~~L~kl~~~  398 (443)
T PF04053_consen  336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGD----REKLSKLAKI  398 (443)
T ss_dssp             HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-----HHHHHHHHHH
T ss_pred             HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCC----HHHHHHHHHH
Confidence            9999988776  566999999999999999999999997743           4555556666677    6666666666


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006076          213 VLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQM  248 (662)
Q Consensus       213 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~  248 (662)
                      ....| .     +|.....+.-.|++++..+++.+.
T Consensus       399 a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  399 AEERG-D-----INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            66655 1     233333444456666666655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.33  E-value=26  Score=40.55  Aligned_cols=54  Identities=26%  Similarity=0.127  Sum_probs=26.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      +.++-..|++++|..+...+..  +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            4455555555555555554421  00111122245555666666666666665554

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.22  E-value=6.9  Score=33.68  Aligned_cols=44  Identities=16%  Similarity=0.152  Sum_probs=31.1

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076          295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG  339 (662)
Q Consensus       295 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  339 (662)
                      .++..+...+.......+++.+++.+ ..+....|.++..|++..
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~   55 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD   55 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC
Confidence            45555566667777777777777766 356778888888888753

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.05  E-value=11  Score=35.43  Aligned_cols=63  Identities=14%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREM  279 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  279 (662)
                      .+.+.-+..++.+.  +--+..++--..+|..+|..+.|-..+++.-+            ...+-++++|+++|++-
T Consensus        74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqra  136 (308)
T KOG1585|consen   74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRA  136 (308)
T ss_pred             HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHH
Confidence            34444444444332  22234556666777777777766655554311            12344566666666554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.01  E-value=4.1  Score=39.77  Aligned_cols=156  Identities=12%  Similarity=0.054  Sum_probs=107.7

Q ss_pred             HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHH--HHhcCCCHH
Q 006076          336 ARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS--FVSVLG--ACSHAGLVE  408 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~--a~~~~g~~~  408 (662)
                      .-.|+.-+|...++++.+   .|..+|+--=.+|.-.|+.+.-...+++.... ..||...  |..-+-  ++...|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            346778888878887764   58889999999999999999999999988764 3455533  333333  445789999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHhcCCHHHHHHH
Q 006076          409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP-------GPKVWGSLLGSCRIHCNVELAERA  481 (662)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-------~~~~~~~ll~~~~~~g~~~~a~~~  481 (662)
                      +|.+.-++..+.+  +.|.-.-.++...+--.|++.|+.+++.+-.-.=       ...-|..-+ .+...+.++.|+.+
T Consensus       193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI  269 (491)
T KOG2610|consen  193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI  269 (491)
T ss_pred             hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence            9999888776432  3456666778888889999999999988763110       111122211 23445789999999


Q ss_pred             HHHHH--hcCCCCcch
Q 006076          482 SKRLF--ELEPTNAGN  495 (662)
Q Consensus       482 ~~~~~--~~~p~~~~~  495 (662)
                      |.+-+  +++.+|..+
T Consensus       270 yD~ei~k~l~k~Da~a  285 (491)
T KOG2610|consen  270 YDREIWKRLEKDDAVA  285 (491)
T ss_pred             HHHHHHHHhhccchhh
Confidence            98643  566666533

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.99  E-value=9.5  Score=35.02  Aligned_cols=178  Identities=15%  Similarity=0.145  Sum_probs=102.3

Q ss_pred             CChHHHHHHHhhCC--CCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHH
Q 006076          339 GKLELGQCVFDHMD--KRD-VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       339 g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      |-..-|+-=|.+..  .|+ +..||-+.--+...|+++.|.+.|+...+  +.|.. .+...-.-++--.|++..|.+=|
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~  156 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL  156 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence            44444444444332  343 34678888888888999999999988877  34432 23322223445568888887766


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 006076          415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII-EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN-  492 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-  492 (662)
                      ...-....-.|-...|--++.   +.-++.+|..-+ ++.. ..|..-|..-|-.+.-. ++. .+.+++++.+...++ 
T Consensus       157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~  230 (297)
T COG4785         157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNT  230 (297)
T ss_pred             HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchH
Confidence            655443322333334433332   334566666443 3333 44556666555443321 111 123344444332222 


Q ss_pred             ------cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          493 ------AGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       493 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                            ..+|.-|+.-|...|..++|..+|+.....++
T Consensus       231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence                  35788899999999999999999998776443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.96  E-value=10  Score=35.09  Aligned_cols=194  Identities=19%  Similarity=0.133  Sum_probs=120.0

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCh-hHHHHHHH-HHHh
Q 006076          294 VSVLQACAALAALEQGKMIHGYILRR-GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDV-VSWNSLIS-SYGV  368 (662)
Q Consensus       294 ~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~-~~~~  368 (662)
                      ......+...+.+..+...+...... ........+..+...+...++++.+.+.+.....  ++. ..+..... .+..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
T COG0457          63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE  142 (291)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence            33333344444444444444443331 1223334444455555556666666666665543  211 22223333 6778


Q ss_pred             cCChHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCH
Q 006076          369 HGYGGKAIQIFKEMIYHGVSP----SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKL  443 (662)
Q Consensus       369 ~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~  443 (662)
                      .|++++|...|.+...  ..|    ....+......+...++.+.+...+....+..  +. ....+..+...+...+.+
T Consensus       143 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         143 LGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             cCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccH
Confidence            8888888888888855  333    23344444444667888899998888887532  33 367788888888888899


Q ss_pred             HHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          444 EEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       444 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      ++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999888877 33444 445555555556667799999999999988886

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.84  E-value=20  Score=38.22  Aligned_cols=163  Identities=15%  Similarity=0.078  Sum_probs=102.1

Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCCh-----hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchh
Q 006076          149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDR-----FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVH  223 (662)
Q Consensus       149 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-----~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~  223 (662)
                      ...+++...=.|+-+.+++++.+-.+.+ ++.-..     .+|..++..+.........++.+.+++..+.+.  -|+..
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~  267 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA  267 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence            3344555566788899999988876542 343222     234444444333210233488899999988876  34444


Q ss_pred             HHH-HHHHHHHhcCCHHHHHHHHHcCCCC-------CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHH
Q 006076          224 IMT-TLIDMYARFGCVMYAGFVFSQMAVK-------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS  295 (662)
Q Consensus       224 ~~~-~li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~  295 (662)
                      .|. --..++...|++++|.+.|++....       ....+--+.-++.-.+++++|.+.|..+  .... ..+..+|.-
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L--~~~s-~WSka~Y~Y  344 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL--LKES-KWSKAFYAY  344 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH--Hhcc-ccHHHHHHH
Confidence            443 3445677789999999999975431       2233445556677889999999999999  4432 234555655


Q ss_pred             HHHHH-HccCCH-------HHHHHHHHHHH
Q 006076          296 VLQAC-AALAAL-------EQGKMIHGYIL  317 (662)
Q Consensus       296 ll~a~-~~~~~~-------~~a~~~~~~~~  317 (662)
                      +..+| ...++.       ++|..++..+.
T Consensus       345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  345 LAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            55554 455666       77777777664

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.61  E-value=2.5  Score=40.32  Aligned_cols=61  Identities=20%  Similarity=0.128  Sum_probs=29.6

Q ss_pred             HHHHHHhhcCCHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          432 CMVDLLGRANKLEEAAKIIEDL----RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       432 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      -|...+...|++++|..+|..+    |-.| -+...--|.......|+.++|...++++.+..|..
T Consensus       183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            3444555555555555444443    1111 12333344444555566666666666666655554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.53  E-value=1.9  Score=35.88  Aligned_cols=90  Identities=16%  Similarity=0.046  Sum_probs=59.0

Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CC-CH---HHHHHHHHHHHhcC
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EP-GP---KVWGSLLGSCRIHC  473 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p-~~---~~~~~ll~~~~~~g  473 (662)
                      +.+..|+++.|++.|.....-  .+.....||.-..+|.-.|+.++|++=+++. .+ .| ..   ..|..-...|+..|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            456677888888888777642  2446777888888888888888887777665 11 11 11   22333344577788


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 006076          474 NVELAERASKRLFELEPT  491 (662)
Q Consensus       474 ~~~~a~~~~~~~~~~~p~  491 (662)
                      +.+.|..-|+.+-+++..
T Consensus       130 ~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGSK  147 (175)
T ss_pred             chHHHHHhHHHHHHhCCH
Confidence            888888888877766543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.52  E-value=15  Score=36.09  Aligned_cols=18  Identities=11%  Similarity=-0.250  Sum_probs=11.0

Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 006076          468 SCRIHCNVELAERASKRL  485 (662)
Q Consensus       468 ~~~~~g~~~~a~~~~~~~  485 (662)
                      .+.+.+++++|...++-.
T Consensus       255 ~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHhhcCHHHHHHHHHHH
Confidence            345566777777666643

It is also involved in sporulation [].

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.45  E-value=4.6  Score=39.88  Aligned_cols=93  Identities=12%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             hHHHHHHHhhCCC-------CChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCC-
Q 006076          341 LELGQCVFDHMDK-------RDVVSWNSLISSYGVHGY----GGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGL-  406 (662)
Q Consensus       341 ~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~-  406 (662)
                      ...|..+|+.|++       ++-.++.+|+..  ..++    .+.+..+|+.+.+.|+..+.  .....+|..+..... 
T Consensus       119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~  196 (297)
T PF13170_consen  119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE  196 (297)
T ss_pred             HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence            3455566666653       344455555443  2222    35677788888888877654  333444433333222 


Q ss_pred             -HHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          407 -VEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       407 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                       +..+.++++.+. +.|+++...+|..+.-+
T Consensus       197 ~v~r~~~l~~~l~-~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  197 KVARVIELYNALK-KNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHH-HcCCccccccccHHHHH
Confidence             346777888885 45788877777655443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.17  E-value=17  Score=36.12  Aligned_cols=127  Identities=13%  Similarity=0.015  Sum_probs=75.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHhcCCCHHHHHHHHHHhH---HhcCCCCChHHHHH
Q 006076          361 SLISSYGVHGYGGKAIQIFKEMIYHGVSP-----SPISFVSVLGACSHAGLVEEGKMLFESMR---KEHMIRPSVEHYAC  432 (662)
Q Consensus       361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~  432 (662)
                      +|..++.-.+.++++++.|+...+---..     .-..+..|-+-|.+..++++|.-+.....   ...++..-..-|.+
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            35555666667778888777665521111     12467777777777788877766554432   23333222222333


Q ss_pred             -----HHHHHhhcCCHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076          433 -----MVDLLGRANKLEEAAKIIEDL-------RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       433 -----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                           |.-+|...|++-+|.+.-++.       +.+| -......+...|+..|+.|.|..-|+.+..
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence                 334566667776666666554       2222 233445677888999999998888887765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.02  E-value=29  Score=38.54  Aligned_cols=176  Identities=10%  Similarity=0.079  Sum_probs=101.5

Q ss_pred             ChHHHHHHHHhCCCchHHHHHHh-cCCCCCHhhHHHHH----HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 006076           51 NKNELIQSLCKQGNLRQALDVLS-IEPNPTQHTYELLL----LSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVY  125 (662)
Q Consensus        51 ~~~~li~~~~~~g~~~~A~~~~~-~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  125 (662)
                      +-.+-|..+.+...++-|+.+-+ ...  |..+...+.    .-+.+.|++++|..-+-+-+.. ++|.     .+|.-|
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf  407 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF  407 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence            34567888888888888888877 322  223333333    3344678888887666544332 2322     245555


Q ss_pred             hcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccc
Q 006076          126 SHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSL  202 (662)
Q Consensus       126 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~  202 (662)
                      ....++..-...++.+.+.   +...-+.|+.+|.+.++.+.-.++.+.-. .  |..  .+-.-..+..|.+.+-    
T Consensus       408 Ldaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~--g~~--~fd~e~al~Ilr~sny----  478 (933)
T KOG2114|consen  408 LDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K--GEW--FFDVETALEILRKSNY----  478 (933)
T ss_pred             cCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-C--cce--eeeHHHHHHHHHHhCh----
Confidence            5555555555555555443   34456678888888888887766666443 2  221  1224455666666555    


Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK  251 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~  251 (662)
                      +++|.-+-...   +.  ...+...+   +-..+++++|.+.+..++-+
T Consensus       479 l~~a~~LA~k~---~~--he~vl~il---le~~~ny~eAl~yi~slp~~  519 (933)
T KOG2114|consen  479 LDEAELLATKF---KK--HEWVLDIL---LEDLHNYEEALRYISSLPIS  519 (933)
T ss_pred             HHHHHHHHHHh---cc--CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence            66665443322   21  22333333   34468899999999998754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.85  E-value=23  Score=37.02  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C-CCC--HHHHHHHHHHHHhc
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-I-EPG--PKVWGSLLGSCRIH  472 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~~~  472 (662)
                      +..++-+.|+.++|.+.+.++.+.............|+..|...+.+.++..++.+.. + -|.  ...|++.+--.+..
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav  344 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV  344 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence            3334445555555555555555433221223344555555555566665555555542 1 122  23344333222222


Q ss_pred             CC---------------HHHHHHHHHHHHhcCCCC
Q 006076          473 CN---------------VELAERASKRLFELEPTN  492 (662)
Q Consensus       473 g~---------------~~~a~~~~~~~~~~~p~~  492 (662)
                      ++               ...|.++..++.+.+|.-
T Consensus       345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence            22               123556777877777653

The molecular function of this protein is uncertain.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=90.77  E-value=2  Score=40.82  Aligned_cols=99  Identities=10%  Similarity=0.024  Sum_probs=69.6

Q ss_pred             HHHHHHHcCC--CCCHhHHHHHHHHHHHc-----CChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccC--------
Q 006076          240 YAGFVFSQMA--VKNVVSWSAMIACYARN-----GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA--------  304 (662)
Q Consensus       240 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~--------  304 (662)
                      ..++.|...+  ++|-.+|-+++..+...     +..+-....++.|  +.-|+.-|..+|..+|+.+-+..        
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m--~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ  129 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM--KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ  129 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH--HHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence            3456677776  67888888888877654     4456566677888  88899999999999988764432        


Q ss_pred             --------CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076          305 --------ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK  340 (662)
Q Consensus       305 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  340 (662)
                              +-+-+..++++|...|+-||-.+-..|++++++.+-
T Consensus       130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                    223456677777777777777777777777766554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.71  E-value=21  Score=36.33  Aligned_cols=148  Identities=14%  Similarity=0.029  Sum_probs=77.5

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC--hH
Q 006076          354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP---SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS--VE  428 (662)
Q Consensus       354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~  428 (662)
                      ....+|..+...+.+.|+++.|...+.++...+..+   +......-....-..|+..+|...++...+.. +..+  ..
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~  222 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSI  222 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhccccc
Confidence            445578888888888888888888888887743221   22333334455566788888888887776411 1111  11


Q ss_pred             HHHHHHHHHhhcCCHHHHHHH-HHhcCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076          429 HYACMVDLLGRANKLEEAAKI-IEDLRIEPGPKVWGSLLGSCRI------HCNVELAERASKRLFELEPTNAGNYVLLAD  501 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  501 (662)
                      ....+...+..  ..+..... ........-...+..+..-+..      .++.+++...|+.+.++.|.....|..++.
T Consensus       223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            11111111000  00000000 0000000001122222222223      377888899999999999887777776666


Q ss_pred             HHH
Q 006076          502 VYA  504 (662)
Q Consensus       502 ~~~  504 (662)
                      .+.
T Consensus       301 ~~~  303 (352)
T PF02259_consen  301 FND  303 (352)
T ss_pred             HHH
Confidence            654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK15331 chaperone protein SicA; Provisional

Probab=90.53  E-value=3.6  Score=36.14  Aligned_cols=85  Identities=11%  Similarity=-0.035  Sum_probs=39.0

Q ss_pred             HHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076          262 CYARNGMAFEALELFREMIMESHDLCPNSVTM-VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK  340 (662)
Q Consensus       262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  340 (662)
                      -+-+.|++++|..+|+-+  -..  .|...-| ..+..++-..+++++|...+......+. .|+...--...+|...|+
T Consensus        46 ~~y~~Gk~~eA~~~F~~L--~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFL--CIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHCCCHHHHHHHHHHH--HHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence            344556666666666555  221  1222222 2233333344555555555555544332 222223334455555555


Q ss_pred             hHHHHHHHhhC
Q 006076          341 LELGQCVFDHM  351 (662)
Q Consensus       341 ~~~A~~~~~~m  351 (662)
                      .+.|...|...
T Consensus       121 ~~~A~~~f~~a  131 (165)
T PRK15331        121 AAKARQCFELV  131 (165)
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>PRK11619 lytic murein transglycosylase; Provisional

Probab=90.03  E-value=36  Score=37.92  Aligned_cols=79  Identities=13%  Similarity=-0.050  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076          223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA  302 (662)
Q Consensus       223 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~  302 (662)
                      ..-..-+..+.+.++++...+ |..-+..+...-.....+....|+.++|......+  -..| ...+.....++..+.+
T Consensus       100 ~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l--W~~g-~~~p~~cd~l~~~~~~  175 (644)
T PRK11619        100 SLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKEL--WLTG-KSLPNACDKLFSVWQQ  175 (644)
T ss_pred             HHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--hccC-CCCChHHHHHHHHHHH
Confidence            333444455566777777777 33222345555566677777788877777666666  4444 2234455566666554


Q ss_pred             cCC
Q 006076          303 LAA  305 (662)
Q Consensus       303 ~~~  305 (662)
                      .|.
T Consensus       176 ~g~  178 (644)
T PRK11619        176 SGK  178 (644)
T ss_pred             cCC
Confidence            443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.94  E-value=0.53  Score=29.51  Aligned_cols=26  Identities=8%  Similarity=0.050  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          495 NYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       495 ~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +|..|+++|.+.|+|++|.+++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46789999999999999999999843

>PRK09687 putative lyase; Provisional

Probab=89.87  E-value=21  Score=35.04  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=37.5

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCCh----hHHHHHHHHHhhhhCCCcCCHHHHH
Q 006076          219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMA----FEALELFREMIMESHDLCPNSVTMV  294 (662)
Q Consensus       219 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~p~~~t~~  294 (662)
                      .+|..+....+..+.+.|..+-...+..-+..+|...=...+.++.+.|+.    .+++..+..+  ...  .|+...-.
T Consensus        34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l--~~~--D~d~~VR~  109 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL--ALE--DKSACVRA  109 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH--Hhc--CCCHHHHH
Confidence            444555555555555555433333333323344554444555555555553    3455555544  221  24444444


Q ss_pred             HHHHHHHcc
Q 006076          295 SVLQACAAL  303 (662)
Q Consensus       295 ~ll~a~~~~  303 (662)
                      ..+.++...
T Consensus       110 ~A~~aLG~~  118 (280)
T PRK09687        110 SAINATGHR  118 (280)
T ss_pred             HHHHHHhcc
Confidence            444444433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.77  E-value=13  Score=41.08  Aligned_cols=177  Identities=12%  Similarity=0.005  Sum_probs=91.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 006076          293 MVSVLQACAALAALEQGKMIHGYILRRGLDSI--LPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG  370 (662)
Q Consensus       293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g  370 (662)
                      .-.-|....+...++.|..+-   ...+..++  ........+-+.+.|++++|...+-+-..--..  ..+|.-|....
T Consensus       337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq  411 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ  411 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence            334444455555555554432   22333333  122233344445677777777666543321111  12455555556


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII  450 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  450 (662)
                      +..+-..+++.+.+.|+.-.. --+.||.+|.+.++.++-.++.+... +..+.-|   ....+..+.+.+-+++|..+-
T Consensus       412 ~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA  486 (933)
T KOG2114|consen  412 RIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLA  486 (933)
T ss_pred             HHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHH
Confidence            666666677777777754333 23457777777777777666655442 1111112   234556666677777777666


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006076          451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKR  484 (662)
Q Consensus       451 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  484 (662)
                      .+...  .......++   -..+++++|.+.++.
T Consensus       487 ~k~~~--he~vl~ill---e~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  487 TKFKK--HEWVLDILL---EDLHNYEEALRYISS  515 (933)
T ss_pred             HHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence            65542  233333333   235667777666543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.27  E-value=22  Score=34.47  Aligned_cols=153  Identities=15%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 006076          364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANK  442 (662)
Q Consensus       364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~  442 (662)
                      ......|++.+|..+|....... +-+...-..+..++...|+.+.|..++..+..+.  ..+ ......-+..+.+...
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHHhc
Confidence            34556778888888887777642 2223455566777788888888888887764321  111 1112234555666655


Q ss_pred             HHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChH-HHHHHHHH
Q 006076          443 LEEAAKIIEDLRIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE--PTNAGNYVLLADVYAAADMWD-EVKRVKRL  518 (662)
Q Consensus       443 ~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~  518 (662)
                      ..+..++-.+..-.| |...-..+...+...|+.+.|...+-.++..+  -.|...-..|+.++.-.|.-+ .+.+.+++
T Consensus       219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk  298 (304)
T COG3118         219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK  298 (304)
T ss_pred             CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            555555555553355 55555566677777888888877766666543  345566667777777666433 33344444


Q ss_pred             H
Q 006076          519 L  519 (662)
Q Consensus       519 m  519 (662)
                      |
T Consensus       299 L  299 (304)
T COG3118         299 L  299 (304)
T ss_pred             H
Confidence            3

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.09  E-value=2.6  Score=40.75  Aligned_cols=76  Identities=17%  Similarity=0.302  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHhHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY-----HGVSPSPISFVS  396 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~  396 (662)
                      ..++..++..+..+|+.+.+...++++..   -|...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34677788889999999999998888764   3667899999999999999999999988766     477777666555


Q ss_pred             HHHH
Q 006076          397 VLGA  400 (662)
Q Consensus       397 ll~a  400 (662)
                      ...+
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.89  E-value=22  Score=33.83  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          465 LLGSCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +..-|.+.|.+..|..-++.+++.-|+..   ..+..|..+|.+.|..++|.+.-+-+...
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            44568889999999999999998766543   35667888999999999999988777653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.87  E-value=4.7  Score=35.54  Aligned_cols=45  Identities=18%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             cCCHHHHHHHHHcCCCCCHhHHHHH-----HHHHHHcCChhHHHHHHHHH
Q 006076          235 FGCVMYAGFVFSQMAVKNVVSWSAM-----IACYARNGMAFEALELFREM  279 (662)
Q Consensus       235 ~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m  279 (662)
                      .+..++|..-|..+.+.+--.|-.|     .....+.|+...|...|.++
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei  120 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI  120 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            3445555555555544332222222     22344556666666666655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.81  E-value=9.2  Score=39.80  Aligned_cols=59  Identities=14%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          463 GSLLGSCRIHCNVELAERASKRLFELEPT--NAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ..|...+.+.|+.++|.+.++.+++..|.  +......|++.+...+++.|+..++.+-.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            34555566777777777777777765553  344566677777777777777777776543

The molecular function of this protein is uncertain.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.78  E-value=9.7  Score=34.40  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC------hHHH
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS------VEHY  430 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~  430 (662)
                      +..+..-|.+.|+.++|++.|.++.+....|..  ..+..++..+...+++..+.....+......-..|      ..+|
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~  118 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY  118 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            344444455555555555555555443333332  22334444444455555555444444221100001      1222


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhc
Q 006076          431 ACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       431 ~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      ..|..  ...+++.+|-+.|-+.
T Consensus       119 ~gL~~--l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  119 EGLAN--LAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHhchHHHHHHHHHcc
Confidence            22222  2356777777776655

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.53  E-value=1.9  Score=38.87  Aligned_cols=89  Identities=16%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             HHHhhcCCHHHHHHHHHhc-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 006076          435 DLLGRANKLEEAAKIIEDL-RIEPG------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD  507 (662)
Q Consensus       435 ~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  507 (662)
                      +-+.+.|++++|..-|.+. ..-|.      .+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            3456677777777776655 11221      2344444566778889999999999999999987777777888999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 006076          508 MWDEVKRVKRLLEARG  523 (662)
Q Consensus       508 ~~~~A~~~~~~m~~~~  523 (662)
                      ++++|+.=++++.+..
T Consensus       183 k~eealeDyKki~E~d  198 (271)
T KOG4234|consen  183 KYEEALEDYKKILESD  198 (271)
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            9999999999888744

>PRK09687 putative lyase; Provisional

Probab=88.38  E-value=27  Score=34.31  Aligned_cols=76  Identities=11%  Similarity=0.108  Sum_probs=41.2

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      .++..+-...+.++++.|+.+-...+.+.+..+++  .-..+.++...|.. +|+..+.++.+.  .||...-...+.+|
T Consensus       203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            33555555566666666664433334444444432  23456666777764 577777776653  34655555555554


Q ss_pred             h
Q 006076          402 S  402 (662)
Q Consensus       402 ~  402 (662)
                      .
T Consensus       278 ~  278 (280)
T PRK09687        278 K  278 (280)
T ss_pred             h
Confidence            3

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.36  E-value=0.84  Score=27.91  Aligned_cols=31  Identities=19%  Similarity=0.105  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      +|..+...+...|+.++|...+++.++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566666777777777777777777777663

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=88.30  E-value=33  Score=35.26  Aligned_cols=413  Identities=13%  Similarity=0.051  Sum_probs=221.7

Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCCccHHHHHHHHHhhCCC
Q 006076          101 NVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTI---YVWNALFRALTLAGRGEEVLELYRRMNGTGT  177 (662)
Q Consensus       101 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~  177 (662)
                      ++-+.+.+.  +.|..+|-.||.-|...|.+++.++++++|..|-+   .+|..-|++=....++.....+|.+-+..  
T Consensus        30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--  105 (660)
T COG5107          30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--  105 (660)
T ss_pred             HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--
Confidence            444444443  56788999999999999999999999999998754   58999999888889999999999988776  


Q ss_pred             CCCCChhhHHHHHHHHHhCCC-Cccc-hHHHHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---------hcCCHHHHHHH
Q 006076          178 GIRSDRFTYTYVLKACVASSC-GFSL-LKHGKEIHASVLR-HGYNGI-VHIMTTLIDMYA---------RFGCVMYAGFV  244 (662)
Q Consensus       178 g~~p~~~t~~~ll~~~~~~~~-~~~~-~~~a~~~~~~~~~-~g~~~~-~~~~~~li~~y~---------~~g~~~~A~~~  244 (662)
                      .+.  ...|..-|.-..+... ..|+ --...+.++..+. .+++|- ...|+..+...-         ...++|..++.
T Consensus       106 ~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~  183 (660)
T COG5107         106 SLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG  183 (660)
T ss_pred             hcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            444  3444444544433332 1110 0111233333333 345543 345565554432         22345566667


Q ss_pred             HHcCCC-C--CH-hHHH------HHHHHH-HH--cCC----hhHHHHHHHHHhhhhCCCcC----CHHHHHHHHH-----
Q 006076          245 FSQMAV-K--NV-VSWS------AMIACY-AR--NGM----AFEALELFREMIMESHDLCP----NSVTMVSVLQ-----  298 (662)
Q Consensus       245 f~~~~~-~--~~-~~~~------~li~~~-~~--~g~----~~~A~~~~~~m~~~~~~~~p----~~~t~~~ll~-----  298 (662)
                      +.++.. |  +. ..|+      .=+... ++  .|.    +..|...+++......|++.    +..|++-+-+     
T Consensus       184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~  263 (660)
T COG5107         184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN  263 (660)
T ss_pred             HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence            777653 2  11 1122      111111 11  121    34566666666433344332    2223332111     


Q ss_pred             ------HHHcc-----CC-H-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChh------
Q 006076          299 ------ACAAL-----AA-L-EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVV------  357 (662)
Q Consensus       299 ------a~~~~-----~~-~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~------  357 (662)
                            -=...     ++ . ...--+|++++.. +.-...+|----.-+...++-+.|.+....-.+  |...      
T Consensus       264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~  342 (660)
T COG5107         264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY  342 (660)
T ss_pred             hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence                  10000     00 0 0111122222221 011122222222223345666677766554332  2211      


Q ss_pred             ------------HHHHHHHHHHh---cCChHHHHHH------HHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 006076          358 ------------SWNSLISSYGV---HGYGGKAIQI------FKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES  416 (662)
Q Consensus       358 ------------~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  416 (662)
                                  +|..++..+.+   .+..+.+-..      ..+..-....--...|...+++-.+..-++.|+.+|-+
T Consensus       343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k  422 (660)
T COG5107         343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK  422 (660)
T ss_pred             HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                        12222222211   1111111100      11111000111134566677777788889999999999


Q ss_pred             hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC
Q 006076          417 MRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKV-WGSLLGSCRIHCNVELAERASKRLFELEP--TN  492 (662)
Q Consensus       417 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~  492 (662)
                      ..+..-+.+++..+++++.-++ .|+..-|..+|+-- ..-||... -+-.+.-+...++-+.|..+|+..++.-.  .-
T Consensus       423 ~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~  501 (660)
T COG5107         423 LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL  501 (660)
T ss_pred             HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence            9754336788999999998776 57778889998753 33455444 34566666778888999999996654211  12


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          493 AGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ...|..+++-=..-|++..+..+-+.|.+
T Consensus       502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         502 KRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            35777777777788888777776666654

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=88.04  E-value=48  Score=36.85  Aligned_cols=21  Identities=43%  Similarity=0.563  Sum_probs=13.5

Q ss_pred             HhhcCCHHHHHHHHHhcCCCC
Q 006076          437 LGRANKLEEAAKIIEDLRIEP  457 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m~~~p  457 (662)
                      +...|++++|++.++++++-|
T Consensus       515 ~~~~g~~~~AL~~i~~L~liP  535 (613)
T PF04097_consen  515 LYHAGQYEQALDIIEKLDLIP  535 (613)
T ss_dssp             HHHTT-HHHHHHHHHHTT-S-
T ss_pred             HHHcCCHHHHHHHHHhCCCCC
Confidence            356778888888888887666

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.48  E-value=2.4  Score=36.34  Aligned_cols=55  Identities=18%  Similarity=0.032  Sum_probs=45.2

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      ...++.++++.++..+.-+.|+.+..-..-+.++...|+|+||.++++.+.+.+.
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            3477888888888888888888888888888888888999999998888876553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.30  E-value=1  Score=28.15  Aligned_cols=28  Identities=18%  Similarity=0.063  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                      +|..|...|...|++++|+.++++.+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4667778888888888888888885543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.27  E-value=2.8  Score=36.67  Aligned_cols=54  Identities=22%  Similarity=0.145  Sum_probs=37.4

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ...++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+..
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            455667777777777777777766666666777777777777777777765543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=86.94  E-value=2.1  Score=28.22  Aligned_cols=27  Identities=19%  Similarity=0.421  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      +|..+...|.+.|++++|.++|++..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555556666666666666666655

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=86.75  E-value=18  Score=30.48  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076          360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK  419 (662)
Q Consensus       360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  419 (662)
                      ..-+..+..+|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++....+
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34456667777777777777777653 366777777777888888888888888877764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.54  E-value=1.5  Score=26.75  Aligned_cols=28  Identities=14%  Similarity=0.196  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      .+|..+...|...|++++|+..|++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            3566677777777777777777777666

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=86.17  E-value=22  Score=35.21  Aligned_cols=129  Identities=9%  Similarity=0.076  Sum_probs=77.3

Q ss_pred             ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHcCCCC-------CHhHHHHHHHHHHHc
Q 006076          200 FSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR--FG----CVMYAGFVFSQMAVK-------NVVSWSAMIACYARN  266 (662)
Q Consensus       200 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~  266 (662)
                      ...++....+++.+.+.|+..+.+++-+-.-+...  ..    ....|..+|+.|.+.       +-.++..|+..  ..
T Consensus        75 ~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~  152 (297)
T PF13170_consen   75 EEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TS  152 (297)
T ss_pred             HHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cc
Confidence            34477888899999999998888777654433333  12    245678888888642       44555566544  22


Q ss_pred             CC----hhHHHHHHHHHhhhhCCCcCC-H-HHHHHHHHHHHccCC--HHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076          267 GM----AFEALELFREMIMESHDLCPN-S-VTMVSVLQACAALAA--LEQGKMIHGYILRRGLDSILPVVSALV  332 (662)
Q Consensus       267 g~----~~~A~~~~~~m~~~~~~~~p~-~-~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li  332 (662)
                      ++    .+.+...|+.+  ...|+..+ . ...+.+|..+.....  ...+..+++.+.+.|+++....|..+.
T Consensus       153 ~~~e~l~~~~E~~Y~~L--~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  153 EDVEELAERMEQCYQKL--ADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             ccHHHHHHHHHHHHHHH--HHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence            23    34566677777  56666553 2 233344443332222  346677777777778777666655443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=86.04  E-value=24  Score=31.33  Aligned_cols=134  Identities=15%  Similarity=0.182  Sum_probs=79.4

Q ss_pred             HHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhc-CCHHHHHH
Q 006076          166 LELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIV-HIMTTLIDMYARF-GCVMYAGF  243 (662)
Q Consensus       166 ~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~-g~~~~A~~  243 (662)
                      ++.++.+.+.  +++|+...+..+++.+.+.+.    ...-    ..+++.++-+|. .+..-|++.-.+. .-..-|.+
T Consensus        14 lEYirSl~~~--~i~~~~~L~~lli~lLi~~~~----~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lD   83 (167)
T PF07035_consen   14 LEYIRSLNQH--NIPVQHELYELLIDLLIRNGQ----FSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLD   83 (167)
T ss_pred             HHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC----HHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHH
Confidence            3555666666  788888889999998888776    4433    334455544443 3333333332211 01233444


Q ss_pred             HHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 006076          244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR  319 (662)
Q Consensus       244 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  319 (662)
                      .+.++.    ..+..++..+...|++-+|+++.+..  ..    .+......++.+..+.++...-..++....+.
T Consensus        84 MLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~--~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   84 MLKRLG----TAYEEIIEVLLSKGQVLEALRYARQY--HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             HHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHc--CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            444443    34566778888999999999988764  21    12223345667766777666666666655543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.03  E-value=23  Score=31.08  Aligned_cols=90  Identities=18%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             HHHhcCCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHH
Q 006076          399 GACSHAGLVEEGKMLFESMRKEHMIRPSV-EHYACMVDLLGRANKLEEAAKIIEDLR-IEPGPKVWGSLLGSCRIHCNVE  476 (662)
Q Consensus       399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~  476 (662)
                      ..-.+.++.+++..++..+.-   +.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-.
T Consensus        18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            334466788888888887753   45543 333334455678899999999999883 2345555567777776655544


Q ss_pred             HHHHHHHHHHhcCCC
Q 006076          477 LAERASKRLFELEPT  491 (662)
Q Consensus       477 ~a~~~~~~~~~~~p~  491 (662)
                      .=....+++++..++
T Consensus        95 ~Wr~~A~evle~~~d  109 (160)
T PF09613_consen   95 SWRRYADEVLESGAD  109 (160)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            455556666666654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.33  E-value=4.3  Score=39.31  Aligned_cols=61  Identities=20%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ++..++..+...|+.+.+...++++++.+|-+-..|..|..+|.+.|+...|+..++.+.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3444556666666777777777777777777777777777777777777777777776665

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.14  E-value=41  Score=34.12  Aligned_cols=68  Identities=25%  Similarity=0.225  Sum_probs=56.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEP----TNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      ....+|..+...+++.|+++.|...+.++....+    ..+.....-+......|+-++|...++......+
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999988652    2456777778999999999999999988877333

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=84.49  E-value=57  Score=34.27  Aligned_cols=159  Identities=11%  Similarity=0.092  Sum_probs=109.2

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076          252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL  331 (662)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  331 (662)
                      |-...-+++..+.++-...-...+..+|  ..-|  -+...|..++..|... .-+.-..+++++++..+. |++...-|
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~--l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL  138 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRV--LEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL  138 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHH--HHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence            3344567788888888888888888888  4444  4677788888888777 556777888888887654 56666677


Q ss_pred             HHHHHhcCChHHHHHHHhhCCCC------Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHhHHHHHHHHH
Q 006076          332 VTMYARCGKLELGQCVFDHMDKR------DV---VSWNSLISSYGVHGYGGKAIQIFKEMIY-HGVSPSPISFVSVLGAC  401 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~  401 (662)
                      ++-|-+ ++.+.+...|..+..+      +.   ..|.-++..-  ..+.+..+.+..+.+. .|..--.+.+--+-.-|
T Consensus       139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            777766 8888888888766421      11   1566665421  3456666666666654 34444456666666778


Q ss_pred             hcCCCHHHHHHHHHHhHH
Q 006076          402 SHAGLVEEGKMLFESMRK  419 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~  419 (662)
                      +...++++|++++..+.+
T Consensus       216 s~~eN~~eai~Ilk~il~  233 (711)
T COG1747         216 SENENWTEAIRILKHILE  233 (711)
T ss_pred             ccccCHHHHHHHHHHHhh
Confidence            888899999999887664

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.36  E-value=39  Score=32.23  Aligned_cols=236  Identities=14%  Similarity=0.160  Sum_probs=136.0

Q ss_pred             CCHHHHHHHHHcCCC----C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhh-hCCC--cCCHHHHHHHHHHHHccCC
Q 006076          236 GCVMYAGFVFSQMAV----K---NVVSWSAMIACYARNGMAFEALELFREMIME-SHDL--CPNSVTMVSVLQACAALAA  305 (662)
Q Consensus       236 g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--~p~~~t~~~ll~a~~~~~~  305 (662)
                      ..+++|..-|.++.+    +   .--+.-.||..+.+.|++++.++.|.+|+.- ...+  .-+..+.++++.--+...+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            355666666655431    1   2233445777788888888888877777410 0011  1245567777777666666


Q ss_pred             HHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC------------C---ChhHHHHHHHH
Q 006076          306 LEQGKMIHGYILRR-----GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK------------R---DVVSWNSLISS  365 (662)
Q Consensus       306 ~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------~---~~~~~~~li~~  365 (662)
                      .+.-..+++.-.+.     +-..-..+-+.|...|...|.+..-.+++.++..            +   =...|..=|..
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            66666665543321     1122233445677888888888888888877741            1   12367777888


Q ss_pred             HHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHh-----cCCCHHHHHHHHHHhHHhcCC--CCC---hHHHHHHH
Q 006076          366 YGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACS-----HAGLVEEGKMLFESMRKEHMI--RPS---VEHYACMV  434 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~~~---~~~~~~li  434 (662)
                      |..+.+-.+-..+|++...-. .-|.+ ....+++-|.     +.|.+++|..-|-+.-+.+.-  .|.   ---|..|.
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA  279 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA  279 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence            888888777777887765522 23433 3445566554     457787776444333333321  122   22366677


Q ss_pred             HHHhhcC----CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006076          435 DLLGRAN----KLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       435 ~~~~~~g----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~  477 (662)
                      +++.+.|    +-+||.    -....|.....+.|+.+|..+ +..+
T Consensus       280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~e  321 (440)
T KOG1464|consen  280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIE  321 (440)
T ss_pred             HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHH
Confidence            7777776    222221    011345666778899998765 4444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.63  E-value=15  Score=33.12  Aligned_cols=56  Identities=14%  Similarity=0.036  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCCCC------HhHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076          224 IMTTLIDMYARFGCVMYAGFVFSQMAVKN------VVSWSAMIACYARNGMAFEALELFREM  279 (662)
Q Consensus       224 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m  279 (662)
                      .+..+.+.|.+.|+.+.|.+.|.++.+..      +..+-.+|......+++..+.....+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44555566666666666666666554331      123444455555555555555555444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.41  E-value=46  Score=32.30  Aligned_cols=57  Identities=11%  Similarity=-0.046  Sum_probs=51.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .-..|...|.+.+|.++.++++.++|-+...+-.|...|+..|+--+|.+-++.+.+
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            346789999999999999999999999999999999999999998888888887754

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=82.81  E-value=2.7  Score=41.08  Aligned_cols=113  Identities=15%  Similarity=0.073  Sum_probs=80.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCC
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLR-I-EPGPKVWGSLLGSCRIHCN  474 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~  474 (662)
                      .+-|.+.|.+++|+..+.....   +.| ++.++..-..+|.+..++..|..=....- + +.-...|.--..+-...|+
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            4568889999999999987764   455 88888888999999999888776555431 1 1112345445555556688


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076          475 VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                      .++|.+-++..++++|.+.    -|-..|.+.....|+.-+.+
T Consensus       181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~K  219 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATK  219 (536)
T ss_pred             HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhh
Confidence            8999999999999999853    34555666666666655544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.49  E-value=1.9  Score=24.64  Aligned_cols=24  Identities=29%  Similarity=0.217  Sum_probs=18.8

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHH
Q 006076          494 GNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                      .....|+.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356678888888888888888765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.24  E-value=23  Score=28.11  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME  282 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  282 (662)
                      -++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+..||+..|-+|-..  +.|..+++..-+.+|  .
T Consensus        21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl--a   95 (115)
T TIGR02508        21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL--A   95 (115)
T ss_pred             HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH--H
Confidence            56666666666655422 333333444567788999999999999999999999887654  667777777777777  5


Q ss_pred             hCCCcCCHHHHH
Q 006076          283 SHDLCPNSVTMV  294 (662)
Q Consensus       283 ~~~~~p~~~t~~  294 (662)
                      ..| .|...+|.
T Consensus        96 ~sg-~p~lq~Fa  106 (115)
T TIGR02508        96 ASG-DPRLQTFV  106 (115)
T ss_pred             hCC-CHHHHHHH
Confidence            555 45544443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.12  E-value=23  Score=28.10  Aligned_cols=61  Identities=16%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 006076          333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS  396 (662)
Q Consensus       333 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  396 (662)
                      ..+...|++++|..+.+.+..||+..|-+|-.  .+.|..+++..-+.+|..+| .|...+|..
T Consensus        47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa  107 (115)
T TIGR02508        47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA  107 (115)
T ss_pred             HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence            34667899999999999999999999988765  35677777777777787776 555555544

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.52  E-value=3.3  Score=25.03  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      .|..+...|...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            455566666667777777777766665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.46  E-value=1  Score=39.04  Aligned_cols=84  Identities=18%  Similarity=0.322  Sum_probs=55.6

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHH
Q 006076           86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEV  165 (662)
Q Consensus        86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A  165 (662)
                      ++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++....   .-...++..+-+.|.+++|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            3555666667777777777777666566777888888888888777888887774333   3334566666666666666


Q ss_pred             HHHHHHH
Q 006076          166 LELYRRM  172 (662)
Q Consensus       166 ~~l~~~m  172 (662)
                      .-++.++
T Consensus        90 ~~Ly~~~   96 (143)
T PF00637_consen   90 VYLYSKL   96 (143)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHc
Confidence            6666655

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=81.43  E-value=12  Score=29.77  Aligned_cols=60  Identities=13%  Similarity=0.221  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076          374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD  435 (662)
Q Consensus       374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  435 (662)
                      +..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.|  +....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence            5556666666777889999999999999999999999999999976544  33336766654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=81.26  E-value=13  Score=29.36  Aligned_cols=62  Identities=15%  Similarity=0.240  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006076          372 GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVD  435 (662)
Q Consensus       372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  435 (662)
                      .-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.|  .+...|..+++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq   84 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence            336666777777778899999999999999999999999999998864432  24456666654

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=80.54  E-value=3  Score=25.67  Aligned_cols=24  Identities=17%  Similarity=0.074  Sum_probs=15.4

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHH
Q 006076          219 NGIVHIMTTLIDMYARFGCVMYAG  242 (662)
Q Consensus       219 ~~~~~~~~~li~~y~~~g~~~~A~  242 (662)
                      +.+..+|+.|...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            445666666666666666666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	662
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 60.2 bits (144), Expect = 2e-09
 Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 9/181 (4%)

Query: 288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV 347
           P    +  +LQ      +L+  +   G   +  L      + A         +L L   +
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 348 FDHMDKR-------DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA 400
                 +        +  +N+++  +   G   + + +   +   G++P  +S+ + L  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 401 CSHAGLVEEG-KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP 459
                      +   E M +E +   ++   A ++    RA  L+   K+     + P  
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALF-TAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268

Query: 460 K 460
            
Sbjct: 269 P 269

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 48.3 bits (113), Expect = 9e-06
 Identities = 19/170 (11%), Positives = 51/170 (30%), Gaps = 8/170 (4%)

Query: 278 EMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA---LVTM 334
                   L      +++  + C     L     +      +     L  +     ++  
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174

Query: 335 YARCGKLELGQCVFDHMDKR----DVVSWNSLISSYGVHGYGGKAIQ-IFKEMIYHGVSP 389
           +AR G  +    V   +       D++S+ + +   G        I+   ++M   G+  
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234

Query: 390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR 439
             +    +L     A +++    +  +      + P V     + D+  +
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 46.7 bits (109), Expect = 3e-05
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 73  SIEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVD 132
               +P +     LL       SL          +          +          D + 
Sbjct: 85  QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144

Query: 133 DARHVFDKTRRR-------TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFT 185
            A H+      +       T+ ++NA+       G  +E++ +   +     G+  D  +
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK--DAGLTPDLLS 202

Query: 186 YTYVLKAC 193
           Y   L+  
Sbjct: 203 YAAALQCM 210

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 95/681 (13%), Positives = 172/681 (25%), Gaps = 237/681 (34%)

Query: 51  NKNELIQSL-CK--QGNLRQAL-----DVLSIEPNPTQHTYELLLLSCTHHNSLSDALNV 102
            ++  + +  CK  Q   +  L     D + +  +    T  L     +    +      
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 103 HSHLTDNGF--------DQDPFLVTKLINVYSHFDSVDDARHVFDK---TRRRTIYVWNA 151
                +  F         + P ++T++       D + +   VF K   +R +       
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSRLQPY---LK 139

Query: 152 LFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHA 211
           L +AL      + VL +   + G+G              K  VA                
Sbjct: 140 LRQALLELRPAKNVL-ID-GVLGSG--------------KTWVA---------------L 168

Query: 212 SVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFE 271
            V                    +  C M    +F          W  +  C        E
Sbjct: 169 DVCLS----------------YKVQCKMDFK-IF----------WLNLKNC-NSPETVLE 200

Query: 272 ALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL 331
            L+         + + PN  +                    H   ++  + SI   +  L
Sbjct: 201 MLQKL------LYQIDPNWTSRSD-----------------HSSNIKLRIHSIQAELRRL 237

Query: 332 VT--MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP 389
           +    Y  C  L L   V       +V   N+            KA   F          
Sbjct: 238 LKSKPYENC--L-L---VLL-----NV--QNA------------KAWNAFN--------- 263

Query: 390 SPISFVSVLGACSHAGLVEEGKML--------FESMRKEHMIRPSVEHYACMVDLLGRAN 441
                     +C         K+L         + +        S++H       L    
Sbjct: 264 ---------LSC---------KILLTTRFKQVTDFLSAATTTHISLDH---HSMTLTPDE 302

Query: 442 KLEEAAKII----EDLRIEP---GP---KVWGSLL--GSCRI----HCNVELAERASKRL 485
                 K +    +DL  E     P    +    +  G        H N +      +  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 486 FE-LEPTNA-GNYVLLA----DVYAAAD----MWDEVKRVKRLLEARGLQKVPGRSRIEV 535
              LEP      +  L+      +        +W +V +   ++    L K    S +E 
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEK 419

Query: 536 KRKMYSFVSVD---EFHPQFE---QLHALLINLSAEMKEKGYVPQTKVVLYDLD------ 583
           + K  +        E   + E    LH  +++       K +     +  Y LD      
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPY-LDQYFYSH 476

Query: 584 -------AEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC--------EDCHSF 628
                   E  ER+ L     + + F  +     + IR                +    +
Sbjct: 477 IGHHLKNIEHPERMTL--FRMVFLDFRFL----EQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 629 TKFISKFANK-EILVRDVNRF 648
             +I     K E LV  +  F
Sbjct: 531 KPYICDNDPKYERLVNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 34/263 (12%), Positives = 70/263 (26%), Gaps = 72/263 (27%)

Query: 437 LGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP-TNAGN 495
           L   N  E   ++++ L  +  P        S  I   +   +   +RL + +P  N   
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-- 246

Query: 496 YVLLADVYAAADMWDE--VK----RVKRLLEARGLQ-----KVPGRSRIEVKRKMYSF-- 542
            ++L +V       +           K LL  R  Q          + I +     +   
Sbjct: 247 LLVLLNV------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 543 ------------VSVDEFHPQFEQLHALLINLSAEM-----------KEKGYVPQTKVV- 578
                           +   +    +   +++ AE            K       T ++ 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 579 --LYDLDAEEKERIVLGHSEKLAVAFGLINTSKGETIRITKNLRLC--------EDCHSF 628
             L  L+  E  +      ++L+V F         +  I   L L          D    
Sbjct: 361 SSLNVLEPAEYRK----MFDRLSV-F-------PPSAHIPTIL-LSLIWFDVIKSDVMV- 406

Query: 629 TKFISKFANKEILVRDVNRFHHF 651
              ++K     ++ +        
Sbjct: 407 --VVNKLHKYSLVEKQPKESTIS 427

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 70/441 (15%), Positives = 123/441 (27%), Gaps = 115/441 (26%)

Query: 36  VSLNSSTTPTSLSSRNKNELIQSLCKQ--GNLRQALDVLSIEPNPTQHTYE---LLLLSC 90
           ++L +  +P ++      E++Q L  Q   N     D  S               LL S 
Sbjct: 187 LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 91  THHNSLSDALNVHSHLTDNGFD-QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVW 149
            + N L   LNV +    N F+     L+T      + F  V D           T    
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLT------TRFKQVTDFL----SAATTTHISL 291

Query: 150 NALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEI 209
           +     LT     +EV  L  +        R         L          +  +    I
Sbjct: 292 DHHSMTLTP----DEVKSLLLKY----LDCRPQD------LP---REVLTTNPRRLS--I 332

Query: 210 HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM- 268
            A  +R G            D +    C            +  ++  S  +         
Sbjct: 333 IAESIRDGLA--------TWDNWKHVNC----------DKLTTIIESS--LNVLEPAEYR 372

Query: 269 -AFEALELFRE--MIMES------HDLCPNSVTMVSVLQACAALAALE-QGKM----IHG 314
             F+ L +F     I          D+  + V +  V+      + +E Q K     I  
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISIPS 430

Query: 315 -YI-LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYG 372
            Y+ L+  L++   +  ++V  Y      +    +  ++D                  Y 
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-----------------QY- 472

Query: 373 GKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR-KEHMIRPSVEHYA 431
                 +  + +H            L    H   +   +M+F   R  E  IR     + 
Sbjct: 473 -----FYSHIGHH------------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 432 CMVDLLGRANKLEEAAKIIED 452
               +L    +L+     I D
Sbjct: 516 ASGSILNTLQQLKFYKPYICD 536

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 33/259 (12%), Positives = 70/259 (27%), Gaps = 23/259 (8%)

Query: 271 EALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA 330
           + +   + +   S    P       V     A  A  +  ++   I        L  V  
Sbjct: 17  QCINEAQRVKPSS----PERDVERDVFLY-RAYLAQRKYGVVLDEIKPSSAPE-LQAVRM 70

Query: 331 LVTMYARCGKL-----ELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH 385
                A   +      EL + +   +D  +        S Y        A++   +    
Sbjct: 71  FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD-- 128

Query: 386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE 445
               S       +        ++  +   + M+ +       +     V L     KL++
Sbjct: 129 ----SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 446 AAKIIEDLRIEPGPKVWGSL--LGSCRIH-CNVELAERASKRLFELEPTNAGNYVLLADV 502
           A  I +++  +        L    +C +     E AE   +   + +  +    + L  +
Sbjct: 185 AYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243

Query: 503 YAAADMWDEVKRVKRLLEA 521
                   EV    R L  
Sbjct: 244 SQHLGKPPEV--TNRYLSQ 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	662
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.76
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.71
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.65
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.61
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.45
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.44
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.43
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.4
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.38
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.3
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.29
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.25
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.24
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.24
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.18
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.18
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.13
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.03
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.01
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.01
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.96
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.95
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.9
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.9
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.9
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.85
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.82
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.79
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.73
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.7
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.69
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.69
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.67
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.65
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.62
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.55
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.55
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.55
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.54
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.54
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.53
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.51
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.46
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.45
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.45
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.41
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.4
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.37
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.35
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.32
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.32
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.32
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.31
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.31
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.28
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.28
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.26
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.22
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.22
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.22
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.21
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.21
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.17
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.11
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.1
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.1
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.02
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.02
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.01
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.01
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.01
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.0
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.0
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.98
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.98
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.97
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.97
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.95
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.95
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.93
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.91
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.86
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.81
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.81
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.75
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.73
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.72
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.7
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.68
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.67
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.56
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.55
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.26
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.25
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.21
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.17
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.02
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.02
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.95
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.8
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.7
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.67
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.55
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.54
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.46
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.45
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.1
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.92
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.69
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.41
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.31
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.08
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.79
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.17
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.34
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.6
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.06
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	88.55
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.02
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	87.68
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.7
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	85.94
2p58_C	116	Putative type III secretion protein YSCG; type III	85.92
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.19
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	85.07
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	85.01
2p58_C	116	Putative type III secretion protein YSCG; type III	84.98
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	83.55
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	83.08
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	82.65
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.2
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	80.25
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.19

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.9e-42  Score=376.98  Aligned_cols=475  Identities=9%  Similarity=-0.036  Sum_probs=395.2

Q ss_pred             CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHH
Q 006076           27 PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHS  104 (662)
Q Consensus        27 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  104 (662)
                      .+..++..| +.++.+++..     |+.++..|.+.|++++|+.+|+  ....|+..++..++.+|.+.|++++|..+|.
T Consensus        68 ~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  141 (597)
T 2xpi_A           68 SFLKERNAQ-NTDSLSREDY-----LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLT  141 (597)
T ss_dssp             ---------------CHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCCCCcc-ccchHHHHHH-----HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence            567788888 8887776665     5669999999999999999998  3456788999999999999999999999999


Q ss_pred             HHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhcCCccHH
Q 006076          105 HLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR-------------------TIYVWNALFRALTLAGRGEEV  165 (662)
Q Consensus       105 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A  165 (662)
                      .+...  ++++.+++.++.+|.++|++++|.++|+++...                   +..+|+.++.+|.+.|++++|
T Consensus       142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  219 (597)
T 2xpi_A          142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA  219 (597)
T ss_dssp             HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence            88654  678999999999999999999999999965443                   378999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCChh-hHHHHHHHHHhCCCCccchHHHHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006076          166 LELYRRMNGTGTGIRSDRF-TYTYVLKACVASSCGFSLLKHGKEI-HASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF  243 (662)
Q Consensus       166 ~~l~~~m~~~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  243 (662)
                      +++|++|.+.    .|+.. .+..+...+...+.  ...+....+ +..+...+..+...+++.++.+|.+.|++++|.+
T Consensus       220 ~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          220 KECYKEALMV----DAKCYEAFDQLVSNHLLTAD--EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             HHHHHHHHHH----CTTCHHHHHHHHHTTCSCHH--HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHh----CchhhHHHHHHHHhhcccch--hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            9999999876    34433 33333332221111  001111111 3444444555566778888999999999999999


Q ss_pred             HHHcCCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 006076          244 VFSQMAV--KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGL  321 (662)
Q Consensus       244 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~  321 (662)
                      +|+++.+  ++..+|+.++.+|.+.|++++|+++|+++  ...+ +.+..++..++.++...|++++|..+++.+.+.. 
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  369 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI--LEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-  369 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence            9999987  79999999999999999999999999999  4433 3477889999999999999999999999999764 


Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 006076          322 DSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL  398 (662)
Q Consensus       322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  398 (662)
                      +.+..+++.++.+|.++|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++
T Consensus       370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  448 (597)
T 2xpi_A          370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG  448 (597)
T ss_dssp             TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence            5578899999999999999999999999875   3568899999999999999999999999999853 44778999999


Q ss_pred             HHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCC--HHHHHHHHHHH
Q 006076          399 GACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPG--PKVWGSLLGSC  469 (662)
Q Consensus       399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~  469 (662)
                      .+|.+.|++++|.++|+.+.+..  +.+..+|+.++.+|.+.|++++|.++|+++       +..|+  ..+|..++.+|
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            99999999999999999998653  457899999999999999999999999988       44777  78999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...|++++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus       527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-37  Score=339.97  Aligned_cols=471  Identities=11%  Similarity=0.027  Sum_probs=393.5

Q ss_pred             chhhhccCC---CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcC--CCCCHhhHHHHHHHHhc
Q 006076           18 HTNSIAHLP---PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIE--PNPTQHTYELLLLSCTH   92 (662)
Q Consensus        18 ~~~li~~y~---~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~p~~~~~~~ll~~~~~   92 (662)
                      -+.++..|.   +.++|..+| +.+...++   +..+|+.++.+|.+.|++++|+.+|+..  .+++..+++.++.++.+
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~-~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (597)
T 2xpi_A           87 LRLWRHDALMQQQYKCAAFVG-EKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK  162 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH-HHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHH-HHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            467777777   899999999 88863322   2245778999999999999999999943  67899999999999999


Q ss_pred             CCChHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCC---cchHHHHHH
Q 006076           93 HNSLSDALNVHSHLTDN---------------GFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRT---IYVWNALFR  154 (662)
Q Consensus        93 ~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~  154 (662)
                      .|++++|.++|+.+...               |..++..+|+.++.+|.+.|++++|.++|+++.+.+   ...|..+..
T Consensus       163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  242 (597)
T 2xpi_A          163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS  242 (597)
T ss_dssp             TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            99999999999853211               223457899999999999999999999999987543   345555555


Q ss_pred             HHHhcCCccHHHH--H-HHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076          155 ALTLAGRGEEVLE--L-YRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM  231 (662)
Q Consensus       155 ~~~~~g~~~~A~~--l-~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  231 (662)
                      .+...+..+.+..  + +..+...  +..++..+|+.++..|.+.++    +++|.+++..+.+.  +++..+++.++.+
T Consensus       243 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~~~~~--~~~~~~~~~l~~~  314 (597)
T 2xpi_A          243 NHLLTADEEWDLVLKLNYSTYSKE--DAAFLRSLYMLKLNKTSHEDE----LRRAEDYLSSINGL--EKSSDLLLCKADT  314 (597)
T ss_dssp             TTCSCHHHHHHHHHHSCTHHHHGG--GHHHHHHHHHTTSCTTTTHHH----HHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhcCCcccccc--hHHHHHHHHHHHHHHHcCcch----HHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence            4444333222221  1 4555544  444555566666777777777    99999999998866  5889999999999


Q ss_pred             HHhcCCHHHHHHHHHcCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH
Q 006076          232 YARFGCVMYAGFVFSQMA---VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ  308 (662)
Q Consensus       232 y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~  308 (662)
                      |.+.|++++|..+|+++.   ..+..+|+.++.+|.+.|++++|.++|+++  ... .+.+..++..+...|.+.|++++
T Consensus       315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL--VDR-HPEKAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH--HHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH--Hhh-CcccHHHHHHHHHHHHHhccHHH
Confidence            999999999999999985   347789999999999999999999999999  432 24568899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076          309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH  385 (662)
Q Consensus       309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  385 (662)
                      |.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|++|.+.
T Consensus       392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999998864 3468899999999999999999999999875   357889999999999999999999999999986


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-C
Q 006076          386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEH---MIRPS--VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-G  458 (662)
Q Consensus       386 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~  458 (662)
                      . +.+..+|..+...+.+.|++++|.++|+.+.+..   +..|+  ..+|..++.+|.+.|++++|.++++++ ...| +
T Consensus       471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  549 (597)
T 2xpi_A          471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND  549 (597)
T ss_dssp             C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred             C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            3 4468899999999999999999999999997542   45677  789999999999999999999999987 3334 7


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076          459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA  505 (662)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  505 (662)
                      ..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999988753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=1.5e-27  Score=253.46  Aligned_cols=184  Identities=13%  Similarity=0.169  Sum_probs=164.3

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHhCCCCc
Q 006076          254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA---------LEQGKMIHGYILRRGLDSI  324 (662)
Q Consensus       254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~  324 (662)
                      ..++.+|.+|++.|+.++|+++|++|  ...|++||.+||+++|.+|+..+.         ++.|.++|++|.+.|+.||
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M--~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd  104 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEA--RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN  104 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHH--HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence            45788889999999999999999999  788999999999999999886543         6888999999999999999


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA  400 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  400 (662)
                      ..+||+||++|++.|++++|.++|++|.    .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999886    489999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA  440 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  440 (662)
                      |++.|++++|.+++++|. +.|+.|+..+|+.++..|...
T Consensus       185 ~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          185 SMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred             HhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999996 567899999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=1.8e-24  Score=224.99  Aligned_cols=372  Identities=14%  Similarity=0.097  Sum_probs=232.7

Q ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCCccH
Q 006076           88 LSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR---RRTIYVWNALFRALTLAGRGEE  164 (662)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~  164 (662)
                      ..+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...   ..+..+|+.+...|.+.|++++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            33445566666666666666543 2233445555555566666666666655432   2244556666666666666666


Q ss_pred             HHHHHHHHhhCCCCCCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006076          165 VLELYRRMNGTGTGIRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF  243 (662)
Q Consensus       165 A~~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  243 (662)
                      |++.|+++...    .|+ ..++..+..++...++    +++|.+.+..+++.. +.+..                    
T Consensus        86 A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~-p~~~~--------------------  136 (388)
T 1w3b_A           86 AIEHYRHALRL----KPDFIDGYINLAAALVAAGD----MEGAVQAYVSALQYN-PDLYC--------------------  136 (388)
T ss_dssp             HHHHHHHHHHH----CTTCHHHHHHHHHHHHHHSC----SSHHHHHHHHHHHHC-TTCTH--------------------
T ss_pred             HHHHHHHHHHc----CcchHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhC-CCcHH--------------------
Confidence            66666655543    222 2234444444444444    444444444444432 22223                    


Q ss_pred             HHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 006076          244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS  323 (662)
Q Consensus       244 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~  323 (662)
                                 .+..+...+...|++++|++.|.++.  ... +.+..++..+...+...|++++|...++.+++.+ +.
T Consensus       137 -----------~~~~l~~~~~~~g~~~~A~~~~~~al--~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~  201 (388)
T 1w3b_A          137 -----------VRSDLGNLLKALGRLEEAKACYLKAI--ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN  201 (388)
T ss_dssp             -----------HHHHHHHHHHTTSCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred             -----------HHHHHHHHHHHccCHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence                       33444444444444444444444442  111 1123344444444445555555555555554443 22


Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLG  399 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~  399 (662)
                      +...+..+...+...|++++|...|++..   ..+..+|..+...|...|++++|++.|+++.+.  .| +..++..+..
T Consensus       202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~  279 (388)
T 1w3b_A          202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLAN  279 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence            34556666777777777777777776554   234667888888888888888888888888874  34 3567788888


Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  477 (662)
                      ++.+.|++++|.+.|+.+.+..  +.+..++..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus       280 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  357 (388)
T 1w3b_A          280 ALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888887542  557788888888888888888888888887 3344 56788888888888899999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          478 AERASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      |...+++++++.|+++..|..++.+|...|+
T Consensus       358 A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            9999999988888888888888888876653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=3.1e-27  Score=251.04  Aligned_cols=211  Identities=13%  Similarity=0.065  Sum_probs=170.3

Q ss_pred             HHHHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006076          164 EVLELYRRMNGTGTGIRSDR-FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAG  242 (662)
Q Consensus       164 ~A~~l~~~m~~~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  242 (662)
                      .+..+.+++.+.  ++.+.. ..++.+|.+|++.|+    +++|.++|++|.+.|+.||..+||+||.+|++.+...++ 
T Consensus         8 ~~e~L~~~~~~k--~~~~spe~~l~~~id~c~k~G~----~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-   80 (501)
T 4g26_A            8 PSENLSRKAKKK--AIQQSPEALLKQKLDMCSKKGD----VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-   80 (501)
T ss_dssp             ------------------CHHHHHHHHHHHTTTSCC----HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-
T ss_pred             hHHHHHHHHHHh--cccCCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-
Confidence            344555666655  454433 356777888888887    888888888888888888888888888877776653221 


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 006076          243 FVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD  322 (662)
Q Consensus       243 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~  322 (662)
                                           .+.+..++|.++|++|  ...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.
T Consensus        81 ---------------------~~~~~l~~A~~lf~~M--~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~  137 (501)
T 4g26_A           81 ---------------------SPNPGLSRGFDIFKQM--IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ  137 (501)
T ss_dssp             ---------------------SCCHHHHHHHHHHHHH--HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred             ---------------------hhcchHHHHHHHHHHH--HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence                                 1234568899999999  88999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 006076          323 SILPVVSALVTMYARCGKLELGQCVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVL  398 (662)
Q Consensus       323 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  398 (662)
                      ||..+||+||.+|++.|++++|.++|++|.    .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++
T Consensus       138 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~  217 (501)
T 4g26_A          138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE  217 (501)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred             CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence            999999999999999999999999999996    5899999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q 006076          399 GACSHA  404 (662)
Q Consensus       399 ~a~~~~  404 (662)
                      ..|+..
T Consensus       218 ~~F~s~  223 (501)
T 4g26_A          218 EWFKSE  223 (501)
T ss_dssp             HHHHSH
T ss_pred             HHHhcC
Confidence            988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=5.9e-24  Score=221.20  Aligned_cols=351  Identities=13%  Similarity=0.073  Sum_probs=303.1

Q ss_pred             HHHHHhcCCccHHHHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006076          153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDR-FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDM  231 (662)
Q Consensus       153 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  231 (662)
                      ...+.+.|++++|++.+.++.+.    .|+. ..+..+...+...++    ++++...+...++.. +.+..++..+...
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~----~~~a~~~~~~a~~~~-p~~~~~~~~lg~~   76 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRR----LDRSAHFSTLAIKQN-PLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence            45567789999999999988765    4554 445555566677788    999999999888775 6678899999999


Q ss_pred             HHhcCCHHHHHHHHHcCC--CC-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-HHHHHHHHHHHccCCHH
Q 006076          232 YARFGCVMYAGFVFSQMA--VK-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-VTMVSVLQACAALAALE  307 (662)
Q Consensus       232 y~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~t~~~ll~a~~~~~~~~  307 (662)
                      |.+.|++++|...|+++.  .| +..+|..+..++.+.|++++|++.|.++  ...  .|+. ..+..+...+...|+++
T Consensus        77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~--~p~~~~~~~~l~~~~~~~g~~~  152 (388)
T 1w3b_A           77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA--LQY--NPDLYCVRSDLGNLLKALGRLE  152 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH--HHH--CTTCTHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHh--CCCcHHHHHHHHHHHHHccCHH
Confidence            999999999999999875  23 5678999999999999999999999998  332  3554 45666777788899999


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          308 QGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       308 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      +|.+.+..+++.. +.+..+++.+...|.+.|++++|...|+++.+   .+...|..+...+...|++++|+..|++...
T Consensus       153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  231 (388)
T 1w3b_A          153 EAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999874 34578899999999999999999999998863   3567899999999999999999999999988


Q ss_pred             cCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-CCCCHHH
Q 006076          385 HGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-IEPGPKV  461 (662)
Q Consensus       385 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~  461 (662)
                      .  .| +..++..+..++...|++++|.+.|+.+.+..  +.+...|..+...|.+.|++++|.+.++++ . .+++..+
T Consensus       232 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          232 L--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             h--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence            4  45 46788899999999999999999999998642  346788999999999999999999999988 2 3457889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      |..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999886

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.6e-22  Score=213.56  Aligned_cols=425  Identities=10%  Similarity=-0.044  Sum_probs=300.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCC---CCCcchHHHHHHHHHh
Q 006076           82 TYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTR---RRTIYVWNALFRALTL  158 (662)
Q Consensus        82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~  158 (662)
                      .+......+.+.|++++|...+..+++..  |++.++..+..+|.+.|++++|...|+++.   ..+..+|..+...|.+
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            44555566667777777777777777764  567777777777777777777777777543   2355677777788888


Q ss_pred             cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhc
Q 006076          159 AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL---IDMYARF  235 (662)
Q Consensus       159 ~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~  235 (662)
                      .|++++|+..|+++...  + +++......++..+.....    ...+.+.+..+...+..|+....+.-   .......
T Consensus        86 ~g~~~~A~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (514)
T 2gw1_A           86 LGKFADAMFDLSVLSLN--G-DFNDASIEPMLERNLNKQA----MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL  158 (514)
T ss_dssp             TTCHHHHHHHHHHHHHS--S-SCCGGGTHHHHHHHHHHHH----HHHHTTC---------------------------CC
T ss_pred             HhhHHHHHHHHHHHHhc--C-CCccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence            88888888888887765  2 2344444444433332211    22222222111111111111000000   0000011


Q ss_pred             CCHHHHHHHHHcCC---------CC-CHhHHHHHHHHHHH---cCChhHHHHHHHHHhhhh-----CCC--------cCC
Q 006076          236 GCVMYAGFVFSQMA---------VK-NVVSWSAMIACYAR---NGMAFEALELFREMIMES-----HDL--------CPN  289 (662)
Q Consensus       236 g~~~~A~~~f~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~-----~~~--------~p~  289 (662)
                      .....+...+....         .+ +...|......+..   .|++++|+..|+++.  .     ...        +.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  236 (514)
T 2gw1_A          159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA--RLFEEQLDKNNEDEKLKEKL  236 (514)
T ss_dssp             CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH--HHHHHHTTTSTTCHHHHHHH
T ss_pred             chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH--HHhhhhhccCccccccChHH
Confidence            11111112222211         12 24455555555554   899999999999984  3     211        223


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHH
Q 006076          290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSY  366 (662)
Q Consensus       290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~  366 (662)
                      ..++..+...+...|++++|...++.+.+....  ..++..+...|...|++++|...|+++.+   .+...|..+...|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  314 (514)
T 2gw1_A          237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN  314 (514)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence            456777788889999999999999999988644  88889999999999999999999998753   4677899999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076          367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA  446 (662)
Q Consensus       367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  446 (662)
                      ...|++++|+..|++..... +.+..++..+...+...|++++|..+++.+.+..  +.+...+..+...|.+.|++++|
T Consensus       315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999853 2345788888899999999999999999998653  44678899999999999999999


Q ss_pred             HHHHHhc----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006076          447 AKIIEDL----RIEPG----PKVWGSLLGSCRI---HCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV  515 (662)
Q Consensus       447 ~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  515 (662)
                      ...++++    +..|+    ..+|..+...+..   .|++++|...++++++..|+++.++..++.+|.+.|++++|...
T Consensus       392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (514)
T 2gw1_A          392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL  471 (514)
T ss_dssp             HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999887    22232    4488999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC
Q 006076          516 KRLLEAR  522 (662)
Q Consensus       516 ~~~m~~~  522 (662)
                      +++..+.
T Consensus       472 ~~~a~~~  478 (514)
T 2gw1_A          472 FEESADL  478 (514)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-21  Score=209.97  Aligned_cols=435  Identities=8%  Similarity=-0.050  Sum_probs=317.0

Q ss_pred             hHHHHHHHHhCCCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCC
Q 006076           52 KNELIQSLCKQGNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFD  129 (662)
Q Consensus        52 ~~~li~~~~~~g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  129 (662)
                      |......+.+.|++++|+..|+  ....|+..+|..+..++...|++++|.+.+..+++.. +.+..++..+..+|.+.|
T Consensus         9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g   87 (514)
T 2gw1_A            9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG   87 (514)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence            4557788999999999999999  2233789999999999999999999999999999876 446678999999999999


Q ss_pred             ChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076          130 SVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG  206 (662)
Q Consensus       130 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a  206 (662)
                      ++++|...|+++..   .+......++..+........+.+.+..+...  +..|+...+..-.........    ....
T Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~  161 (514)
T 2gw1_A           88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA--TATPTELSTQPAKERKDKQEN----LPSV  161 (514)
T ss_dssp             CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------C----CCCH
T ss_pred             hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhccCChhhHHHhhccC----Cchh
Confidence            99999999987643   23444455555444433333333333222222  111221111111000000000    1111


Q ss_pred             HHHHHHHHHhCC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHHcCCC----------------C-CHhHHH
Q 006076          207 KEIHASVLRHGY---------NGIVHIMTTLIDMYAR---FGCVMYAGFVFSQMAV----------------K-NVVSWS  257 (662)
Q Consensus       207 ~~~~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~  257 (662)
                      ..+...+.....         +.+...+..+...+..   .|++++|...|+++..                + +..+|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence            111111111100         2234444445554554   8999999999987644                2 356788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076          258 AMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR  337 (662)
Q Consensus       258 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  337 (662)
                      .+...+...|++++|+..|+++  ....  |+..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~--l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKA--IELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHH--HHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH--HhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence            8999999999999999999988  4333  447778888889999999999999999998764 3467788999999999


Q ss_pred             cCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          338 CGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      .|++++|...|++..   ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+
T Consensus       317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999874   3467789999999999999999999999998852 335678888999999999999999999


Q ss_pred             HHhHHhcCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076          415 ESMRKEHMIRPS----VEHYACMVDLLGR---ANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRL  485 (662)
Q Consensus       415 ~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  485 (662)
                      +.+.+...-.++    ...+..+...|.+   .|++++|...++++ .. +.+..+|..+...+...|++++|...++++
T Consensus       396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            998764322222    4489999999999   99999999999987 22 346788999999999999999999999999


Q ss_pred             HhcCCCCcchHHHH
Q 006076          486 FELEPTNAGNYVLL  499 (662)
Q Consensus       486 ~~~~p~~~~~~~~l  499 (662)
                      +++.|+++..+..+
T Consensus       476 ~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          476 ADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHCSSHHHHHHHH
T ss_pred             HHhccccHHHHHHH
Confidence            99999987766655

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=6.5e-21  Score=202.22  Aligned_cols=335  Identities=13%  Similarity=0.051  Sum_probs=239.1

Q ss_pred             CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhH
Q 006076          145 TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHI  224 (662)
Q Consensus       145 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  224 (662)
                      ++..|..+...+.+.|++++|+.+|+++...   .+.+..++..+..++...++    +++|...+..+++.+ +.+..+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~-p~~~~~   96 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGK----SKAALPDLTKVIQLK-MDFTAA   96 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhcC-CCcHHH
Confidence            3455666666677777777777777766653   23345555666666666666    666666666666554 334556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCCC---CH---hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHH
Q 006076          225 MTTLIDMYARFGCVMYAGFVFSQMAVK---NV---VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQ  298 (662)
Q Consensus       225 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~  298 (662)
                      +..+..+|.+.|++++|...|+++.+.   +.   ..|..++..+...+                         +..+..
T Consensus        97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------------~~~~a~  151 (450)
T 2y4t_A           97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------------LRSQAL  151 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------------HHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------------HHHHHH
Confidence            666666666666666666666665432   22   44444433311110                         111222


Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH
Q 006076          299 ACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKA  375 (662)
Q Consensus       299 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A  375 (662)
                      .+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+   .+..+|..+...|...|++++|
T Consensus       152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3455666777777777666653 34667788888889999999999998888753   5678899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHhH-HHHH------------HHHHhcCCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 006076          376 IQIFKEMIYHGVSPSPIS-FVSV------------LGACSHAGLVEEGKMLFESMRKEHMIRPS-----VEHYACMVDLL  437 (662)
Q Consensus       376 ~~~~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~  437 (662)
                      +..|+++...  .|+... +..+            ..+|.+.|++++|..+|+.+.+.   .|+     ..++..+...+
T Consensus       231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~  305 (450)
T 2y4t_A          231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF  305 (450)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence            9999999874  555433 3333            77899999999999999999864   354     45889999999


Q ss_pred             hhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH------------HHH
Q 006076          438 GRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA------------DVY  503 (662)
Q Consensus       438 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~  503 (662)
                      .+.|++++|...++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++            +.|
T Consensus       306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y  385 (450)
T 2y4t_A          306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY  385 (450)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence            9999999999999987 3344 7899999999999999999999999999999999999999988            456


Q ss_pred             HhcC-----ChHHHHHHHHH
Q 006076          504 AAAD-----MWDEVKRVKRL  518 (662)
Q Consensus       504 ~~~g-----~~~~A~~~~~~  518 (662)
                      ...|     +.+++.+.+++
T Consensus       386 ~~lg~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          386 KILGVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             GGSCSSTTCCTTHHHHHHHH
T ss_pred             HHhCCCccCCHHHHHHHHHH
Confidence            6666     55566666665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=2.6e-20  Score=202.32  Aligned_cols=421  Identities=9%  Similarity=-0.007  Sum_probs=237.1

Q ss_pred             hHHHHHHHHhCCCchHHHHHHh---cCCCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcC
Q 006076           52 KNELIQSLCKQGNLRQALDVLS---IEPNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHF  128 (662)
Q Consensus        52 ~~~li~~~~~~g~~~~A~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  128 (662)
                      |..+...+.+.|++++|+..|+   ...+.+..++..+..++...|++++|.+.+..+++.. +.+...+..+...|.+.
T Consensus        28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  106 (537)
T 3fp2_A           28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL  106 (537)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence            3445555566666666666665   2223345555555555555666666666666655543 22444555555555555


Q ss_pred             CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHH
Q 006076          129 DSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKE  208 (662)
Q Consensus       129 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~  208 (662)
                      |++++|...|+.+ ..+....+..+..+...+...+|+..++.+....++..+.                          
T Consensus       107 g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~--------------------------  159 (537)
T 3fp2_A          107 GNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ--------------------------  159 (537)
T ss_dssp             TCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------C--------------------------
T ss_pred             CCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc--------------------------
Confidence            5555555555422 1122222222333334444445555555554321000000                          


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHh---HHHHHHHHHHH--------cCChhHHHHHHH
Q 006076          209 IHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV---SWSAMIACYAR--------NGMAFEALELFR  277 (662)
Q Consensus       209 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~  277 (662)
                               ..|+    ...+..|....+.+.+...+......+..   .+..+...+..        .|++++|+.+|+
T Consensus       160 ---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~  226 (537)
T 3fp2_A          160 ---------VLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH  226 (537)
T ss_dssp             ---------CCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------ccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence                     0111    12223333444445554444444333221   22222222111        235666666666


Q ss_pred             HHhhhhCCCcCC--------HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 006076          278 EMIMESHDLCPN--------SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD  349 (662)
Q Consensus       278 ~m~~~~~~~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~  349 (662)
                      ++  ...  .|+        ..++..+...+...|++++|...+..+++..  |+..++..+...|.+.|++++|...|+
T Consensus       227 ~~--l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~  300 (537)
T 3fp2_A          227 SL--LSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ  300 (537)
T ss_dssp             HH--HC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred             HH--HHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence            66  221  233        1234444455566667777777777776653  335666667777777777777777777


Q ss_pred             hCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC
Q 006076          350 HMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS  426 (662)
Q Consensus       350 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~  426 (662)
                      +..   ..+..+|..+...|...|++++|++.|++..... +.+..++..+...+...|++++|..+++.+.+..  +.+
T Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~  377 (537)
T 3fp2_A          301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTL  377 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence            654   2345677777777777777777777777777642 2234567777777777788888888887776542  345


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL----R----IEPGPKVWGSLLGSCRIH----------CNVELAERASKRLFEL  488 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~  488 (662)
                      ...+..+...|.+.|++++|...++++    +    .......+..+...+...          |++++|...++++++.
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence            667777777788888888888777765    1    111222344445566666          8888888888888888


Q ss_pred             CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          489 EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       489 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      .|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus       458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            8888888888888888888888888888877653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.87  E-value=9.7e-20  Score=193.12  Aligned_cols=297  Identities=14%  Similarity=0.064  Sum_probs=249.1

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHH
Q 006076          219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVS  295 (662)
Q Consensus       219 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~  295 (662)
                      +.+...+..+...|.+.|++++|..+|+++.+   .+..+|..+..+|.+.|++++|+..|+++  ...+ +.+..++..
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~   99 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV--IQLK-MDFTAARLQ   99 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH--HhcC-CCcHHHHHH
Confidence            55677888889999999999999999988752   46788999999999999999999999988  3332 235677888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhCCCCch---hHHHHH------------HHHHHhcCChHHHHHHHhhCC---CCChh
Q 006076          296 VLQACAALAALEQGKMIHGYILRRGLDSIL---PVVSAL------------VTMYARCGKLELGQCVFDHMD---KRDVV  357 (662)
Q Consensus       296 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~m~---~~~~~  357 (662)
                      +..++...|++++|...++.+.+.. +.+.   ..+..+            ...|.+.|++++|...|+++.   ..+..
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  178 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE  178 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            8888999999999999999888754 2233   455555            445899999999999999876   35778


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH----
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM----  433 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----  433 (662)
                      .|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+..  +.+...+..+    
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~  255 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVK  255 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHH
Confidence            99999999999999999999999998853 4467889999999999999999999999998542  3344555554    


Q ss_pred             --------HHHHhhcCCHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          434 --------VDLLGRANKLEEAAKIIEDL-RIEPG-----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       434 --------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                              ...|.+.|++++|...|+++ ...|+     ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  335 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence                    88999999999999999988 33454     44788889999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC
Q 006076          500 ADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       500 ~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +.+|...|++++|...+++..+.
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHh
Confidence            99999999999999999999864

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.82  E-value=5.4e-17  Score=165.90  Aligned_cols=303  Identities=13%  Similarity=0.058  Sum_probs=184.1

Q ss_pred             hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHH
Q 006076          185 TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIA  261 (662)
Q Consensus       185 t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~  261 (662)
                      .+..+-..+...++    +++|...+..+++.. +.+..++..+...|...|++++|...|+++.+   .+...|..+..
T Consensus         5 ~~~~~~~~~~~~g~----~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   79 (359)
T 3ieg_A            5 KHLELGKKLLAAGQ----LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC----HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            34444455555555    666666666665543 33455555566666666666666666655431   24455555666


Q ss_pred             HHHHcCChhHHHHHHHHHhhhhCCCcC---C-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076          262 CYARNGMAFEALELFREMIMESHDLCP---N-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR  337 (662)
Q Consensus       262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  337 (662)
                      .|.+.|++++|+..|++.  ...  .|   + ...+..+...       ..                ...+..+...|..
T Consensus        80 ~~~~~~~~~~A~~~~~~~--~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~  132 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKV--LKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFD  132 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHH--HTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHH--Hhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHH
Confidence            666666666666666655  221  23   1 1111111000       00                0011122456666


Q ss_pred             cCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          338 CGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      .|++++|.+.|+++.   ..+...|..+...|...|++++|+..++++.... +.+..++..+...+...|++++|...+
T Consensus       133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777777776654   2355566677777777777777777777776642 234556666666777777777777777


Q ss_pred             HHhHHhcCCCCChHHHH------------HHHHHHhhcCCHHHHHHHHHhc-CCCCC-H----HHHHHHHHHHHhcCCHH
Q 006076          415 ESMRKEHMIRPSVEHYA------------CMVDLLGRANKLEEAAKIIEDL-RIEPG-P----KVWGSLLGSCRIHCNVE  476 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~  476 (662)
                      +...+..  +.+...+.            .+...+.+.|++++|...++++ ...|+ .    ..|..+...+...|+++
T Consensus       212 ~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  289 (359)
T 3ieg_A          212 RECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV  289 (359)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence            7766432  22222222            3366678888888888888876 22333 2    22445667788888888


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            8888888888888888888888888888888888888888887753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.80  E-value=1.5e-16  Score=162.49  Aligned_cols=320  Identities=11%  Similarity=0.016  Sum_probs=223.9

Q ss_pred             chHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076          147 YVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM  225 (662)
Q Consensus       147 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  225 (662)
                      ..|..+...+...|+   -.+......+.- ...| +..++..+...+...++    +++|...+..+++.. +.+..++
T Consensus         4 ~~~~~~~~~~~~~g~---~~~A~~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~----~~~A~~~~~~~~~~~-~~~~~~~   74 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQ---LADALSQFHAAV-DGDPDNYIAYYRRATVFLAMGK----SKAALPDLTKVIALK-MDFTAAR   74 (359)
T ss_dssp             HHHHHHHHHHHHTTC---HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHccC----HHHHHHHHHHHHHhC-CCcchHH
Confidence            345555555555542   223333332210 2334 46677788888888899    999999999999885 5567899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCC------CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH
Q 006076          226 TTLIDMYARFGCVMYAGFVFSQMAVK------NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQA  299 (662)
Q Consensus       226 ~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a  299 (662)
                      ..+...|.+.|++++|...|++..+.      +...|..+...+.                         ...+......
T Consensus        75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~  129 (359)
T 3ieg_A           75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALD  129 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHH
Confidence            99999999999999999999987543      2333443321100                         0011222334


Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 006076          300 CAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAI  376 (662)
Q Consensus       300 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~  376 (662)
                      +...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+   .+..+|..+...|...|++++|.
T Consensus       130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  208 (359)
T 3ieg_A          130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL  208 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            455566666666666665553 23456667777777777777777777776543   35667778888888888888888


Q ss_pred             HHHHHHHHcCCCCCH-hHHH------------HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhh
Q 006076          377 QIFKEMIYHGVSPSP-ISFV------------SVLGACSHAGLVEEGKMLFESMRKEHMIRPSV----EHYACMVDLLGR  439 (662)
Q Consensus       377 ~~~~~m~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~  439 (662)
                      ..|++..+.  .|+. ..+.            .+...+.+.|++++|...++.+.+..  +.+.    ..+..+...|.+
T Consensus       209 ~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~  284 (359)
T 3ieg_A          209 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK  284 (359)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH
Confidence            888888774  3433 2222            23556888999999999999987643  2223    335568889999


Q ss_pred             cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076          440 ANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA  505 (662)
Q Consensus       440 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  505 (662)
                      .|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..|..++..
T Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            99999999999987 3344 788999999999999999999999999999999998888877776653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=7.5e-18  Score=182.86  Aligned_cols=359  Identities=11%  Similarity=0.023  Sum_probs=262.8

Q ss_pred             cchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076          146 IYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIM  225 (662)
Q Consensus       146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  225 (662)
                      ...|..+...+.+.|++++|++.|+++...   -+.+..++..+..++...++    +++|.+.+..+++.. +.+..++
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~-p~~~~~~   96 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---DPNEPVFYSNISACYISTGD----LEKVIEFTTKALEIK-PDHSKAL   96 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcC-CchHHHH
Confidence            346777778888888899999998888865   23456677778888888888    889999888888875 5567888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhh----CCCcCCHHHHHHHHHHHH
Q 006076          226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMES----HDLCPNSVTMVSVLQACA  301 (662)
Q Consensus       226 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~p~~~t~~~ll~a~~  301 (662)
                      ..+...|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++....    ....|+...+..    +.
T Consensus        97 ~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~  171 (537)
T 3fp2_A           97 LRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FF  171 (537)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HH
Confidence            888999999999999999997443 233333344556666667788888888873111    122344433333    33


Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHh--------cCChHHHHHHHhhCCC--CC--------hhHHHHH
Q 006076          302 ALAALEQGKMIHGYILRRGLDSI-LPVVSALVTMYAR--------CGKLELGQCVFDHMDK--RD--------VVSWNSL  362 (662)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~--------~g~~~~A~~~~~~m~~--~~--------~~~~~~l  362 (662)
                      ...+.+.+...+.....  ..+. ......+...|..        .|++++|..+|+++.+  |+        ..+|..+
T Consensus       172 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  249 (537)
T 3fp2_A          172 GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT  249 (537)
T ss_dssp             HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred             HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence            33333333222211110  1111 1133333333322        2578899999988764  33        2357777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076          363 ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK  442 (662)
Q Consensus       363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  442 (662)
                      ...+...|++++|+..|+++...  .|+..++..+...+...|++++|...++.+.+..  +.+...+..+...|...|+
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCC
Confidence            78889999999999999999984  6778888889999999999999999999998653  4568899999999999999


Q ss_pred             HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +++|.+.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..
T Consensus       326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999987 2233 578899999999999999999999999999999999999999999999999999999999987


Q ss_pred             hCC
Q 006076          521 ARG  523 (662)
Q Consensus       521 ~~~  523 (662)
                      +..
T Consensus       406 ~~~  408 (537)
T 3fp2_A          406 RLE  408 (537)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.78  E-value=1e-16  Score=161.87  Aligned_cols=287  Identities=10%  Similarity=-0.007  Sum_probs=222.4

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHH
Q 006076          218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMV  294 (662)
Q Consensus       218 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~  294 (662)
                      .+.+..++..+...+...|++++|.++|+++..   .+...+..++..+.+.|++++|+.++.++.  ... +.+...+.
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~   94 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV--DLY-PSNPVSWF   94 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH--HHC-TTSTHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHH--HhC-cCCHHHHH
Confidence            355666777788888888999999998888743   245567777888888899999999998883  322 23456777


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcC
Q 006076          295 SVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHG  370 (662)
Q Consensus       295 ~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g  370 (662)
                      .+...+...| ++++|...++.+++.. +.+...+..+...|...|++++|.+.|++..+   .+...|..+...|...|
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            7777888888 8888998888888764 33567788888889999999999988887752   34567777888888999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHhhcCCH
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHM-------IRPSVEHYACMVDLLGRANKL  443 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~  443 (662)
                      ++++|++.|++..+.. +.+..++..+...+...|++++|...++.+.+...       .+.....+..+...|.+.|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999888742 33457788888888899999999999888875321       133467888899999999999


Q ss_pred             HHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCCh
Q 006076          444 EEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY-AAADMW  509 (662)
Q Consensus       444 ~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~  509 (662)
                      ++|...+++. .. +.+...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus       253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            9999988876 22 336778888888899999999999999999999998888888888888 445554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=2.2e-17  Score=167.21  Aligned_cols=321  Identities=16%  Similarity=0.101  Sum_probs=151.5

Q ss_pred             cCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHH
Q 006076          127 HFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHG  206 (662)
Q Consensus       127 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a  206 (662)
                      +.|++++|.+++++++.++  +|..|..++.+.|++++|++.|.+.        +|..+|..+..++...+.    +++|
T Consensus        15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~----~EeA   80 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGN----WEEL   80 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCC----HHHH
Confidence            6788999999999996654  9999999999999999999999642        466789999999998888    9999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC
Q 006076          207 KEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDL  286 (662)
Q Consensus       207 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  286 (662)
                      ...+....+.  .+++.+.+.|+.+|.++|+++++.++++.   |+..+|+.+...|...|++++|..+|..+       
T Consensus        81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------  148 (449)
T 1b89_A           81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------  148 (449)
T ss_dssp             ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred             HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence            9988877774  55678899999999999999999988864   67789999999999999999999999976       


Q ss_pred             cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH
Q 006076          287 CPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSY  366 (662)
Q Consensus       287 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~  366 (662)
                          ..|..+..++.++|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.-...++..|
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Y  217 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYY  217 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHH
Confidence                26889999999999999999999987      378899999999999999999988777655 3444455689999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc--CCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHh
Q 006076          367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH--AGLVEEGKMLFESMRKEHMIRP------SVEHYACMVDLLG  438 (662)
Q Consensus       367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~  438 (662)
                      .+.|++++|+.+++...... +-....|+-+.-++++  .+++.+..+.|.   ++-+++|      +...|.-++..|.
T Consensus       218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887532 2233455555444544  455556666554   3334555      4678999999999


Q ss_pred             hcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006076          439 RANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEP  490 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  490 (662)
                      .-++++.|...+-+-+  |+..--..+.....+..+.|.--++..-.++..|
T Consensus       294 ~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p  343 (449)
T 1b89_A          294 KYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP  343 (449)
T ss_dssp             HTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred             hhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence            9999999988765543  2322222333444445555544444444444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=4.3e-15  Score=159.21  Aligned_cols=365  Identities=10%  Similarity=-0.039  Sum_probs=267.7

Q ss_pred             ChhHHHHHHHHhhc----CCChHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCCccHHHHHHHHHhhCCCCCCCChh
Q 006076          114 DPFLVTKLINVYSH----FDSVDDARHVFDKTRR-RTIYVWNALFRALTL----AGRGEEVLELYRRMNGTGTGIRSDRF  184 (662)
Q Consensus       114 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~  184 (662)
                      ++.....|...|..    .+++++|...|++..+ .+..++..|...|..    .+++++|++.|++..+.  |   +..
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~  112 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G---LPQ  112 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C---CHH
Confidence            45555556666665    6677777777765433 355566666666666    67777777777777665  3   334


Q ss_pred             hHHHHHHHHHh----CCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHcCCC-CCHhH
Q 006076          185 TYTYVLKACVA----SSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYAR----FGCVMYAGFVFSQMAV-KNVVS  255 (662)
Q Consensus       185 t~~~ll~~~~~----~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~  255 (662)
                      .+..+-..+..    .++    .++|...+....+.|   +...+..|..+|..    .++.++|...|++..+ .+..+
T Consensus       113 a~~~Lg~~y~~g~g~~~~----~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a  185 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVD----KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWS  185 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCC----HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            44445555555    445    778888887777665   45566677777776    6788888888877643 46777


Q ss_pred             HHHHHHHHHH----cCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhH
Q 006076          256 WSAMIACYAR----NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPV  327 (662)
Q Consensus       256 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~  327 (662)
                      +..+...|.+    .++.++|++.|++.  ...+   +...+..+...+..    .++.++|...++...+.|   +...
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a--~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  257 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKS--ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA  257 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            8888888877    78888888888877  4444   45556666666654    678888888888887764   4567


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 006076          328 VSALVTMYAR----CGKLELGQCVFDHMDK-RDVVSWNSLISSYGVH-----GYGGKAIQIFKEMIYHGVSPSPISFVSV  397 (662)
Q Consensus       328 ~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~l  397 (662)
                      +..|..+|..    .++.++|...|++..+ .+..++..+...|...     ++.++|+..|++..+.|   +...+..+
T Consensus       258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l  334 (490)
T 2xm6_A          258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL  334 (490)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence            7778888887    8899999999988764 4666788888888877     89999999999998865   44566667


Q ss_pred             HHHHhcCC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006076          398 LGACSHAG---LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCR  470 (662)
Q Consensus       398 l~a~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~  470 (662)
                      ...+...|   +.++|.++|+...+.    .++..+..|..+|..    .+++++|.+.|++.--..++..+..|...|.
T Consensus       335 g~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~  410 (490)
T 2xm6_A          335 GAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYY  410 (490)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            77776656   788999999988753    467888889999988    8999999999998732346778888888888


Q ss_pred             h----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 006076          471 I----HCNVELAERASKRLFELEPT---NAGNYVLLADVYAA  505 (662)
Q Consensus       471 ~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~  505 (662)
                      .    .++.++|...++++.+.+|+   ++.....|+.++..
T Consensus       411 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          411 YGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            7    89999999999999998854   66666666666553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=7.9e-15  Score=158.82  Aligned_cols=394  Identities=11%  Similarity=0.060  Sum_probs=242.4

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHH
Q 006076          114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRR---TIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVL  190 (662)
Q Consensus       114 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll  190 (662)
                      +...|..++. +.+.|++++|..+|+++...   +...|..++..+.+.|++++|.++|++.+..    .|+...+...+
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~----~p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK----VLHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----CCCHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCChHHHHHHH
Confidence            3444555554 24455555555555544331   3344555555555555555555555555543    23433333332


Q ss_pred             HHH-HhCCCCccchHHHH----HHHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHcCCC-CC-
Q 006076          191 KAC-VASSCGFSLLKHGK----EIHASVLRH-GYNG-IVHIMTTLIDMYAR---------FGCVMYAGFVFSQMAV-KN-  252 (662)
Q Consensus       191 ~~~-~~~~~~~~~~~~a~----~~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~~~~-~~-  252 (662)
                      ... ...++    .+.++    ++++..+.. |..| +..+|...+....+         .|+++.|.++|++... |+ 
T Consensus        87 ~~~~~~~~~----~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~  162 (530)
T 2ooe_A           87 SYVRETKGK----LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI  162 (530)
T ss_dssp             HHHHHHTTT----STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred             HHHHHHccc----hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence            211 12233    33332    244444332 3322 34455555554443         4566666666666432 21 


Q ss_pred             --HhHHHHHHHHH-------------HHcCChhHHHHHHHHHhh----hhC---CCcCCH--------HHHHHHHHHHHc
Q 006076          253 --VVSWSAMIACY-------------ARNGMAFEALELFREMIM----ESH---DLCPNS--------VTMVSVLQACAA  302 (662)
Q Consensus       253 --~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~~----~~~---~~~p~~--------~t~~~ll~a~~~  302 (662)
                        ...|.......             .+.+++.+|..++.++..    ...   .++|+.        ..|...+.....
T Consensus       163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~  242 (530)
T 2ooe_A          163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS  242 (530)
T ss_dssp             THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence              12232221110             123456667766665210    111   134431        233333322221


Q ss_pred             ----cCCH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHHhhCCC---C-Ch
Q 006076          303 ----LAAL----EQGKMIHGYILRRGLDSILPVVSALVTMYAR-------CGKLE-------LGQCVFDHMDK---R-DV  356 (662)
Q Consensus       303 ----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~m~~---~-~~  356 (662)
                          .++.    +.+..+++.++... +.+..+|..++..+.+       .|+++       +|..+|++..+   | +.
T Consensus       243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~  321 (530)
T 2ooe_A          243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM  321 (530)
T ss_dssp             CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred             CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence                1222    36677888888763 4467788888888876       69987       89999997763   4 57


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP--ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV  434 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  434 (662)
                      ..|..++..+.+.|++++|..+|+++.+  +.|+.  ..|...+..+.+.|++++|+++|+...+..  +.+...|...+
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a  397 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAA  397 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHH
Confidence            7899999999999999999999999998  56653  478888888888999999999999987532  22334443333


Q ss_pred             HH-HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcC
Q 006076          435 DL-LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG----NYVLLADVYAAAD  507 (662)
Q Consensus       435 ~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g  507 (662)
                      .+ +...|+.++|..+|++. ...| +...|..++..+...|+.++|..++++++...|.++.    .+...+......|
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G  477 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  477 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence            22 34689999999999976 3234 6788999999999999999999999999998776655    6777788888899


Q ss_pred             ChHHHHHHHHHHHh
Q 006076          508 MWDEVKRVKRLLEA  521 (662)
Q Consensus       508 ~~~~A~~~~~~m~~  521 (662)
                      +.+.+.++.+++.+
T Consensus       478 ~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          478 DLASILKVEKRRFT  491 (530)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.76  E-value=4.1e-16  Score=157.44  Aligned_cols=264  Identities=11%  Similarity=-0.012  Sum_probs=226.9

Q ss_pred             CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 006076          251 KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSA  330 (662)
Q Consensus       251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  330 (662)
                      .+...+..+...+...|++++|+++|+++.  ... +.+...+..+...+...|++++|..++..+++.. +.+..++..
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   95 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVM--EKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA   95 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            356677888889999999999999999984  322 2344566667788899999999999999999875 446778899


Q ss_pred             HHHHHHhcC-ChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC
Q 006076          331 LVTMYARCG-KLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL  406 (662)
Q Consensus       331 li~~y~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  406 (662)
                      +...|...| ++++|...|++..+   .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|+
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            999999999 99999999998753   456789999999999999999999999999853 2345677778889999999


Q ss_pred             HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C----------CCCHHHHHHHHHHHHhcCCH
Q 006076          407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-I----------EPGPKVWGSLLGSCRIHCNV  475 (662)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----------~p~~~~~~~ll~~~~~~g~~  475 (662)
                      +++|.+.++...+..  +.+...+..+...|.+.|++++|...+++.- .          +.+..+|..+...+...|++
T Consensus       175 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          175 SKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             HHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999997542  4568899999999999999999999998761 1          33467899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus       253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999987664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.75  E-value=2e-16  Score=162.53  Aligned_cols=279  Identities=9%  Similarity=-0.076  Sum_probs=220.1

Q ss_pred             HhcCCHHHHHH-HHHcCCC---C----CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccC
Q 006076          233 ARFGCVMYAGF-VFSQMAV---K----NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALA  304 (662)
Q Consensus       233 ~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~  304 (662)
                      .-.|++++|.. .|++...   .    +...|..+...+.+.|++++|+..|+++  .... +.+..++..+..++...|
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAA--VQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHH--HHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHCc
Confidence            34578888888 8875532   1    3456888889999999999999999988  4332 345677888888889999


Q ss_pred             CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHH---------------HHHHH
Q 006076          305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNS---------------LISSY  366 (662)
Q Consensus       305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~  366 (662)
                      ++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+  | +...+..               .+..+
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            9999999999998875 44678888999999999999999999987753  2 2222221               23334


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006076          367 GVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE  445 (662)
Q Consensus       367 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  445 (662)
                      ...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+..  +.+...+..+...|.+.|++++
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHH
Confidence            48899999999999999853221 47888999999999999999999999998643  4468899999999999999999


Q ss_pred             HHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChHHH
Q 006076          446 AAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN-----------AGNYVLLADVYAAADMWDEV  512 (662)
Q Consensus       446 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A  512 (662)
                      |...++++ ... .+..+|..+...+...|++++|...+++++++.|++           ..+|..++.+|...|++++|
T Consensus       270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999987 333 467889999999999999999999999999988877           78899999999999999999


Q ss_pred             HHHHH
Q 006076          513 KRVKR  517 (662)
Q Consensus       513 ~~~~~  517 (662)
                      ..+++
T Consensus       350 ~~~~~  354 (368)
T 1fch_A          350 GAADA  354 (368)
T ss_dssp             HHHHT
T ss_pred             HHhHH
Confidence            99876

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=6.2e-17  Score=163.92  Aligned_cols=289  Identities=8%  Similarity=0.047  Sum_probs=123.4

Q ss_pred             hhhhccCCCchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChHH
Q 006076           19 TNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLSD   98 (662)
Q Consensus        19 ~~li~~y~~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~   98 (662)
                      +.||..-.++++|..+| +.+++++  .|     ..+..++.+.|++++|++.|..  .+|..+|..++.++...|++++
T Consensus        10 ~~ll~~~~~ld~A~~fa-e~~~~~~--vW-----s~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           10 QVLIEHIGNLDRAYEFA-ERCNEPA--VW-----SQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHccCHHHHHHHH-HhCCChH--HH-----HHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHH
Confidence            44555444799999999 8986654  44     4599999999999999999985  3677799999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCC
Q 006076           99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTG  178 (662)
Q Consensus        99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g  178 (662)
                      |...+....+.  .+++.+.+.|+.+|.++|+++++.++++.   |+..+|+.+...|...|++++|...|..+      
T Consensus        80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------
T ss_pred             HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            99988887774  56688899999999999999999988864   67789999999999999999999999976      


Q ss_pred             CCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHH
Q 006076          179 IRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSA  258 (662)
Q Consensus       179 ~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~  258 (662)
                           ..|..+..++.+.++    ++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.....
T Consensus       149 -----~n~~~LA~~L~~Lg~----yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~  212 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGE----YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEE  212 (449)
T ss_dssp             -----TCHHHHHHHHHTTTC----HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHH
T ss_pred             -----hhHHHHHHHHHHhcc----HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHH
Confidence                 258889999999999    99998888876      367889999999999999999988777655 34444556


Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHhCCCC------chhHHHH
Q 006076          259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACA--ALAALEQGKMIHGYILRRGLDS------ILPVVSA  330 (662)
Q Consensus       259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~  330 (662)
                      ++..|.+.|++++|+.+++...  ... +-....|+-+--+++  +.+++.+..+.|..  +.+++|      +...|.-
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL--~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAAL--GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHT--TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHh--CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence            8888999999999999998762  222 223334444433333  34455555554431  112222      3556777


Q ss_pred             HHHHHHhcCChHHHHHHHh
Q 006076          331 LVTMYARCGKLELGQCVFD  349 (662)
Q Consensus       331 li~~y~~~g~~~~A~~~~~  349 (662)
                      ++-.|.+-++++.|....-
T Consensus       288 ~~~ly~~~~e~d~A~~tm~  306 (449)
T 1b89_A          288 LVFLYDKYEEYDNAIITMM  306 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhchHHHHHHHHH
Confidence            7778888888887766443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.73  E-value=1.1e-13  Score=155.79  Aligned_cols=436  Identities=12%  Similarity=0.061  Sum_probs=304.1

Q ss_pred             cchhhhccCC-CchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCC--------HhhHHHHH
Q 006076           17 YHTNSIAHLP-PKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPT--------QHTYELLL   87 (662)
Q Consensus        17 ~~~~li~~y~-~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~--------~~~~~~ll   87 (662)
                      ++|+|...|- +=..+.+++ .+-+.-|+         .++.-||...++.-|.-.|++|..-+        ...|-...
T Consensus       875 ~hnalakiyid~n~npe~fL-~~n~~yd~---------~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~a  944 (1630)
T 1xi4_A          875 THNALAKIYIDSNNNPERFL-RENPYYDS---------RVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLS  944 (1630)
T ss_pred             HHHHHHHHHhccCCCHHHHh-hccCcccH---------HHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHH
Confidence            8999999998 556677776 44333222         25667777777777666665332211        01111122


Q ss_pred             HHHhcCCChH-----------HHHHHHHHHHHhCC--CCChhHHHHHHHHhhcCCChHHHHHHHhcCCCC------Ccch
Q 006076           88 LSCTHHNSLS-----------DALNVHSHLTDNGF--DQDPFLVTKLINVYSHFDSVDDARHVFDKTRRR------TIYV  148 (662)
Q Consensus        88 ~~~~~~~~~~-----------~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~  148 (662)
                      +-+.+..+.+           -=+++.++.....+  ..++.--...+..|...|.+.+|.++++++.-.      +...
T Consensus       945 rylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A          945 RYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred             HHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence            2222222221           11223333222221  223333455677777888888888888776522      2245


Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076          149 WNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTL  228 (662)
Q Consensus       149 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  228 (662)
                      -|.++.+..+. +..+..+...+....      +   ..-+-..|...+.    +++|.++++...     ......+.+
T Consensus      1025 qnlLi~tAIka-D~~Rv~eyI~kLd~~------d---~~eIA~Iai~lgl----yEEAf~IYkKa~-----~~~~A~~VL 1085 (1630)
T 1xi4_A         1025 QNLLILTAIKA-DRTRVMEYINRLDNY------D---APDIANIAISNEL----FEEAFAIFRKFD-----VNTSAVQVL 1085 (1630)
T ss_pred             HHHHHHHHHHh-ChhhHHHHHHHhhhc------c---HHHHHHHHHhCCC----HHHHHHHHHHcC-----CHHHHHHHH
Confidence            56666666666 455655555554321      1   2334455666676    888888887742     112222333


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHH
Q 006076          229 IDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQ  308 (662)
Q Consensus       229 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~  308 (662)
                         +-..|++++|.++.++..  +..+|..+..++.+.|++++|++.|.+.        -|...|..+..+|.+.|++++
T Consensus      1086 ---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A         1086 ---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred             ---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHH
Confidence               237788999999988774  4678999999999999999999999643        367788889999999999999


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006076          309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS  388 (662)
Q Consensus       309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  388 (662)
                      +.+++....+..  ++..+.+.++.+|++.+++++.....   ..++...|..+...|...|++++|..+|...      
T Consensus      1153 AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A         1153 LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred             HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------
Confidence            999999888765  44444556999999999998655543   4667778888999999999999999999984      


Q ss_pred             CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006076          389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGS  468 (662)
Q Consensus       389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~  468 (662)
                         ..|..+...+.+.|++++|.+.+++.       .+..+|..+..++...|++..|.......  ..++..+..++..
T Consensus      1222 ---~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~y 1289 (1630)
T 1xi4_A         1222 ---SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINY 1289 (1630)
T ss_pred             ---hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHH
Confidence               47889999999999999999998866       34688888999999999999999877653  3455566788999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CChHHHHHHHH
Q 006076          469 CRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA--DMWDEVKRVKR  517 (662)
Q Consensus       469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~  517 (662)
                      |...|.+++|+.+++..++++|.....|.-|+.+|++-  ++..|+.+.|.
T Consensus      1290 Ye~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1290 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999999999988888888888888764  46666666665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=4.3e-14  Score=152.99  Aligned_cols=403  Identities=11%  Similarity=0.052  Sum_probs=274.9

Q ss_pred             CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC--CCcchHHHHHHHH
Q 006076           79 TQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR--RTIYVWNALFRAL  156 (662)
Q Consensus        79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~  156 (662)
                      |...|..++.. .+.|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|.++|++...  |++..|...+...
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~   89 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV   89 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            55667767763 56677888888888877652 44566777788888888888888888877654  4555666666422


Q ss_pred             -HhcCCccHHHH----HHHHHhhCCCCCCCC-hhhHHHHHHHHHhCC-----CCccchHHHHHHHHHHHHhCCCCchhHH
Q 006076          157 -TLAGRGEEVLE----LYRRMNGTGTGIRSD-RFTYTYVLKACVASS-----CGFSLLKHGKEIHASVLRHGYNGIVHIM  225 (662)
Q Consensus       157 -~~~g~~~~A~~----l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~  225 (662)
                       ...|+.++|.+    +|++....- |..|+ ...|...+.......     ...+.++.++.++...++....+....|
T Consensus        90 ~~~~~~~~~a~~~~~~~~~~al~~~-g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~  168 (530)
T 2ooe_A           90 RETKGKLPSYKEKMAQAYDFALDKI-GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW  168 (530)
T ss_dssp             HHHTTTSTTHHHHHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred             HHHccchhhHHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence             34567766655    666654421 44443 334444444332210     0022388999999998873211222344


Q ss_pred             HHHHHHH-------------HhcCCHHHHHHHHHc-------CC------CCC--------HhHHHHHHHHHHHc----C
Q 006076          226 TTLIDMY-------------ARFGCVMYAGFVFSQ-------MA------VKN--------VVSWSAMIACYARN----G  267 (662)
Q Consensus       226 ~~li~~y-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~----g  267 (662)
                      .......             .+.++++.|..++..       +.      .|+        ...|...+.....+    +
T Consensus       169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~  248 (530)
T 2ooe_A          169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE  248 (530)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred             HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence            4333221             134567777776654       11      111        34676666443332    2


Q ss_pred             Ch----hHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHhCCCCchhHHH
Q 006076          268 MA----FEALELFREMIMESHDLCPNSVTMVSVLQACAA-------LAALE-------QGKMIHGYILRRGLDSILPVVS  329 (662)
Q Consensus       268 ~~----~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~  329 (662)
                      +.    ++|+.+|++..  .. .+-+...|......+.+       .|+++       +|..+++.+++.-.+.+...+.
T Consensus       249 ~~~~~~~~a~~~y~~al--~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~  325 (530)
T 2ooe_A          249 DQTLITKRVMFAYEQCL--LV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF  325 (530)
T ss_dssp             CSHHHHHHHHHHHHHHH--HH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred             cchhHHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence            22    37788898884  22 12355666666666654       68887       8999999998632345688999


Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC--CC-h-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHH-Hhc
Q 006076          330 ALVTMYARCGKLELGQCVFDHMDK--RD-V-VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGA-CSH  403 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~m~~--~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~  403 (662)
                      .++..+.+.|++++|..+|+++.+  |+ . ..|...+..+.+.|+.++|.++|++..+.  .|+ ...|...... +..
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~  403 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYC  403 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHH
Confidence            999999999999999999998763  43 3 48999999999999999999999999874  343 3333332222 336


Q ss_pred             CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 006076          404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPG--PKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~  477 (662)
                      .|++++|..+|+...+..  +.++..|..+++.+.+.|+.++|..+|++.    +..|+  ...|...+.....+|+.+.
T Consensus       404 ~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~  481 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  481 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred             cCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            899999999999998753  446889999999999999999999999987    22332  4589999999999999999


Q ss_pred             HHHHHHHHHhcCCC
Q 006076          478 AERASKRLFELEPT  491 (662)
Q Consensus       478 a~~~~~~~~~~~p~  491 (662)
                      +..+.+++.+..|+
T Consensus       482 ~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          482 ILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHCch
Confidence            99999999998875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.72  E-value=3.8e-16  Score=160.51  Aligned_cols=261  Identities=11%  Similarity=-0.053  Sum_probs=211.9

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076          252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL  331 (662)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  331 (662)
                      +...|..+...+.+.|++++|++.|+++.  ... +.+..++..+...+...|++++|...++.+++.. +.+..++..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al--~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  139 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI--LQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL  139 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHH--HhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence            45568889999999999999999999884  322 3467788888889999999999999999998875 3457889999


Q ss_pred             HHHHHhcCChHHHHHHHhhCCC--CC-----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhHHHHH
Q 006076          332 VTMYARCGKLELGQCVFDHMDK--RD-----------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PSPISFVSV  397 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l  397 (662)
                      ...|.+.|++++|...|+++.+  |+           ...+..+...|...|++++|++.|+++...... ++..++..+
T Consensus       140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            9999999999999999998763  21           223445688899999999999999999985322 157889999


Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCH
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNV  475 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~  475 (662)
                      ...+...|++++|...|+.+.+..  +.+...+..+...|.+.|++++|...|+++ ...| +..+|..+...|...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            999999999999999999998653  456889999999999999999999999987 3344 588899999999999999


Q ss_pred             HHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          476 ELAERASKRLFELEPT------------NAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      ++|...+++++++.|+            +...+..|+.++...|+.+.+.++.+.
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999988766            367889999999999999999887654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=8.3e-15  Score=144.97  Aligned_cols=270  Identities=8%  Similarity=-0.016  Sum_probs=217.3

Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCH----hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH
Q 006076          231 MYARFGCVMYAGFVFSQMAVKNV----VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL  306 (662)
Q Consensus       231 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~  306 (662)
                      -....|++..|...++.....++    .....+..+|...|++++|+..++.      .-+|+..++..+...+...++.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCCCcH
Confidence            34557999999999988765432    3456678899999999999875542      2356777888888889999999


Q ss_pred             HHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076          307 EQGKMIHGYILRRGLDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH  385 (662)
Q Consensus       307 ~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  385 (662)
                      +.|.+.++.++..+..| +...+..+...|.+.|++++|.+.|++  ..+...+..++..|.+.|+.++|.+.|+++.+.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            99999999998877544 567778888999999999999999998  567889999999999999999999999999985


Q ss_pred             CCCCCHhHH---HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHH
Q 006076          386 GVSPSPISF---VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPK  460 (662)
Q Consensus       386 g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~  460 (662)
                        .|+....   ...+..+...|++++|..+|+++.+..  +.+...++.+..+|.+.|++++|...+++. ...| ++.
T Consensus       160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence              4665321   123344456699999999999998763  668899999999999999999999999986 3344 778


Q ss_pred             HHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076          461 VWGSLLGSCRIHCNVEL-AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK  516 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  516 (662)
                      +|..++..+...|+.++ +..+++++++++|+++.+    .+...+.+.++++..-|
T Consensus       236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence            89999999999999876 678999999999998654    45566666666665443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=1.2e-13  Score=155.44  Aligned_cols=383  Identities=10%  Similarity=0.051  Sum_probs=295.7

Q ss_pred             CHhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 006076           79 TQHTYELLLLSCTHHNSLSDALNVHSHLTDNG--FDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRAL  156 (662)
Q Consensus        79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~  156 (662)
                      ++.--+..++++...|.+.++.++++.++..+  +.-+....+.|+.+..+. +..+..+..++...-+   ...+...+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence            33444667788889999999999999998432  123456677787777776 5566666665555333   45577888


Q ss_pred             HhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076          157 TLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG  236 (662)
Q Consensus       157 ~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  236 (662)
                      ...|++++|.++|++...       .....+.++.   ..++    +++|.++...+      .+..+|..+..++.+.|
T Consensus      1060 i~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~n----ldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGN----LDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred             HhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhh----HHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence            899999999999998631       1222333443   3445    88888887754      34788999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006076          237 CVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYI  316 (662)
Q Consensus       237 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~  316 (662)
                      ++++|.+.|.+.  .|...|..++.++.+.|++++|+++|...  +...  ++....+.+..+|++.+++++...+.   
T Consensus      1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mA--rk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA--RKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred             CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHH--Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence            999999999775  67788999999999999999999999876  4333  44333445888899999988655443   


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 006076          317 LRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVS  396 (662)
Q Consensus       317 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  396 (662)
                       +   .++...+..+.+.|...|++++|...|...     ..|..+...|.+.|++++|++.+++.      .+..+|..
T Consensus      1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A         1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred             -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence             2   345567778999999999999999999985     59999999999999999999999976      35689999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc--
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH--  472 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--  472 (662)
                      +-.+|...|++..|......+      ..++..+..++..|.+.|.+++|+.+++.. ++.| ....|.-|...+++.  
T Consensus      1256 v~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1256 VCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             HHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence            999999999999998876543      356778889999999999999999999776 4444 345666666666654  


Q ss_pred             CCHHHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCChHHHHHH
Q 006076          473 CNVELAERASKRLFELEP-----TNAGNYVLLADVYAAADMWDEVKRV  515 (662)
Q Consensus       473 g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~  515 (662)
                      ++..++.+.|..-..+.|     .++..|.-++-+|.+.|+|+.|..+
T Consensus      1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A         1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred             HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            566677777776666555     4667889999999999999999853

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.72  E-value=1.5e-15  Score=155.99  Aligned_cols=295  Identities=10%  Similarity=0.022  Sum_probs=153.6

Q ss_pred             cCCccHHHH-HHHHHhhCCCCCCC--ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006076          159 AGRGEEVLE-LYRRMNGTGTGIRS--DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARF  235 (662)
Q Consensus       159 ~g~~~~A~~-l~~~m~~~~~g~~p--~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  235 (662)
                      .|++++|++ .|.+..... .-.|  +...+..+...+...++    +++|...+..+++.. +.+..++..+...|.+.
T Consensus        38 ~~~~~~a~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~g~----~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  111 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFE-EENPLRDHPQPFEEGLRRLQEGD----LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN  111 (368)
T ss_dssp             --------CHHHHCCCCCC-SSCTTTTCSSHHHHHHHHHHTTC----HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhHHHhcC-CCCcccchHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            355666665 555443321 0111  23345555555555666    666666666666553 44556666777777777


Q ss_pred             CCHHHHHHHHHcCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-HHHHHHHHHHccCCHHHHHH
Q 006076          236 GCVMYAGFVFSQMA---VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSV-TMVSVLQACAALAALEQGKM  311 (662)
Q Consensus       236 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~  311 (662)
                      |++++|...|+++.   ..+..+|..+...|...|++++|++.|+++  ....  |+.. .+......       ..   
T Consensus       112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~--~~~~~~~~~~~~~-------~~---  177 (368)
T 1fch_A          112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW--LRYT--PAYAHLVTPAEEG-------AG---  177 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHTS--TTTGGGCC-----------------
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhC--cCcHHHHHHHHHH-------hh---
Confidence            77777777777653   235667777888888888888888888877  3322  2221 11110000       00   


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006076          312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R---DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG  386 (662)
Q Consensus       312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  386 (662)
                              ...+ ...+..+...+ +.|++++|...|+++.+  |   +..+|..+...|...|++++|+..|+++....
T Consensus       178 --------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          178 --------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             -----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             --------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                    0000 00001111122 44555555555554431  2   24455556666666666666666666655531


Q ss_pred             CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC--------
Q 006076          387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP--------  457 (662)
Q Consensus       387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--------  457 (662)
                       +.+..++..+...+...|++++|...|+.+.+..  +.+...+..+...|.+.|++++|...++++ ...|        
T Consensus       248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  324 (368)
T 1fch_A          248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  324 (368)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence             2234555566666666666666666666665432  234556666666666666666666666554 1111        


Q ss_pred             ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076          458 ----GPKVWGSLLGSCRIHCNVELAERASKRLF  486 (662)
Q Consensus       458 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  486 (662)
                          ...+|..+..++...|+.++|..++++.+
T Consensus       325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence                14667777777777777777766665443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.71  E-value=1.2e-13  Score=147.87  Aligned_cols=352  Identities=10%  Similarity=-0.056  Sum_probs=293.9

Q ss_pred             CCCcchHHHHHHHHHh----cCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHh----CCCCccchHHHHHHHHHHH
Q 006076          143 RRTIYVWNALFRALTL----AGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVA----SSCGFSLLKHGKEIHASVL  214 (662)
Q Consensus       143 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~a~~~~~~~~  214 (662)
                      ..++.++..+...|..    .+++++|+..|++..+.  |   +...+..+-..+..    .++    .++|.+.+....
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~----~~~A~~~~~~a~  106 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G---YTPAEYVLGLRYMNGEGVPQD----YAQAVIWYKKAA  106 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCC----HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHH
Confidence            3467778888888887    89999999999999876  3   45566666666766    666    999999999998


Q ss_pred             HhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHcCCCC-CHhHHHHHHHHHHH----cCChhHHHHHHHHHhhhhCC
Q 006076          215 RHGYNGIVHIMTTLIDMYAR----FGCVMYAGFVFSQMAVK-NVVSWSAMIACYAR----NGMAFEALELFREMIMESHD  285 (662)
Q Consensus       215 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~  285 (662)
                      +.|   +...+..|..+|..    .+++++|...|++..+. +..++..+...|..    .++.++|++.|++.  ...+
T Consensus       107 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a--~~~~  181 (490)
T 2xm6_A          107 LKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA--AEQG  181 (490)
T ss_dssp             HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--HHCC
Confidence            876   56677788899988    88999999999987544 67788889888988    78999999999998  5544


Q ss_pred             CcCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCh
Q 006076          286 LCPNSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR----CGKLELGQCVFDHMDK-RDV  356 (662)
Q Consensus       286 ~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~  356 (662)
                         +...+..+...+..    .++.++|...++...+.|   +...+..|..+|..    .+++++|...|++..+ .+.
T Consensus       182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  255 (490)
T 2xm6_A          182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS  255 (490)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred             ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence               66777777777776    799999999999999875   56788889999987    8999999999998764 567


Q ss_pred             hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC-----CCHHHHHHHHHHhHHhcCCCCCh
Q 006076          357 VSWNSLISSYGV----HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA-----GLVEEGKMLFESMRKEHMIRPSV  427 (662)
Q Consensus       357 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~  427 (662)
                      .++..+...|..    .++.++|++.|++..+.|   +...+..+...+...     +++++|...|+...+.    .+.
T Consensus       256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~  328 (490)
T 2xm6_A          256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDA  328 (490)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCH
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCH
Confidence            788888888888    899999999999998765   455666777777776     8999999999999753    356


Q ss_pred             HHHHHHHHHHhhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076          428 EHYACMVDLLGRAN---KLEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPTNAGNYVLLA  500 (662)
Q Consensus       428 ~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  500 (662)
                      ..+..|..+|.+.|   ++++|.+.|++.-...++..+..|...|..    .++.++|...++++.+.+  ++.++..|+
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg  406 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLG  406 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence            77888888888767   889999999987324578889999999988    899999999999998865  478899999


Q ss_pred             HHHHh----cCChHHHHHHHHHHHhCC
Q 006076          501 DVYAA----ADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       501 ~~~~~----~g~~~~A~~~~~~m~~~~  523 (662)
                      .+|..    .+++++|...+++..+.+
T Consensus       407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          407 EIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            99998    899999999999998765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.70  E-value=6.7e-16  Score=158.67  Aligned_cols=231  Identities=11%  Similarity=-0.018  Sum_probs=195.4

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHH
Q 006076          289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISS  365 (662)
Q Consensus       289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~  365 (662)
                      +...+......+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|++..+   .+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44558888889999999999999999999875 44688999999999999999999999998763   467899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCH-----------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006076          366 YGVHGYGGKAIQIFKEMIYHGVSPSP-----------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV  434 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  434 (662)
                      |...|++++|++.|+++.+.  .|+.           ..+..+...+...|++++|.++++.+.+...-.++...+..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999884  3432           2233457788999999999999999987542222688999999


Q ss_pred             HHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076          435 DLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV  512 (662)
Q Consensus       435 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  512 (662)
                      ..|.+.|++++|.+.++++ .. +.+..+|..+..+|...|++++|...++++++..|+++.++..++.+|.+.|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999987 23 346889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 006076          513 KRVKRLLEAR  522 (662)
Q Consensus       513 ~~~~~~m~~~  522 (662)
                      ...+++..+.
T Consensus       301 ~~~~~~al~~  310 (365)
T 4eqf_A          301 VSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.69  E-value=3e-15  Score=150.76  Aligned_cols=256  Identities=8%  Similarity=-0.090  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076          256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMY  335 (662)
Q Consensus       256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  335 (662)
                      |..+...+.+.|++++|+.+|+++.  ... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+...|
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   99 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVC--QAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   99 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence            4444445555555555555555542  111 1133444444444555555555555555555442 22344555555556


Q ss_pred             HhcCChHHHHHHHhhCCC--C-ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 006076          336 ARCGKLELGQCVFDHMDK--R-DVVSWNSL--------------IS-SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSV  397 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  397 (662)
                      ...|++++|.+.|+++.+  | +...+..+              .. .+...|++++|++.++++.+.. +.+..++..+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  178 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL  178 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            666666666655555431  1 11222222              22 3777889999999999998853 3366788888


Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCH
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNV  475 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~  475 (662)
                      ...+...|++++|.+.++.+.+..  +.+...+..+...|.+.|++++|...++++ ... .+..+|..+...+...|++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~  256 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY  256 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence            999999999999999999997643  446788999999999999999999999987 333 4678899999999999999


Q ss_pred             HHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          476 ELAERASKRLFELEPT------------NAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      ++|...++++++..|+            ++..+..++.+|.+.|++++|..++++
T Consensus       257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            9999999999999998            678999999999999999999998864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=8.1e-14  Score=148.45  Aligned_cols=366  Identities=12%  Similarity=0.008  Sum_probs=240.5

Q ss_pred             cchHHHHHHHHHhcCCccHHHHHHHHHhhC-----CCCCCC-ChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhC--
Q 006076          146 IYVWNALFRALTLAGRGEEVLELYRRMNGT-----GTGIRS-DRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHG--  217 (662)
Q Consensus       146 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g--  217 (662)
                      ...||.|...+...|++++|++.|++..+.     +....| ...+|..+-..+...|+    +++|...+..+++..  
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~----~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR----LSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHhHh
Confidence            346777777777777777777777765431     001223 34578888889999999    999999998877641  


Q ss_pred             ----CC-CchhHHHHHHHHHHhc--CCHHHHHHHHHcCC--CC-CHhHHHHHHHH---HHHcCChhHHHHHHHHHhhhhC
Q 006076          218 ----YN-GIVHIMTTLIDMYARF--GCVMYAGFVFSQMA--VK-NVVSWSAMIAC---YARNGMAFEALELFREMIMESH  284 (662)
Q Consensus       218 ----~~-~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~--~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~  284 (662)
                          .. ....+++.+..++.+.  +++++|...|++..  .| ++..+..+...   +...++.++|++.|++..  ..
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~l  204 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--RL  204 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--HH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--hc
Confidence                11 1245666665566655  46899999999874  23 55566655544   445678899999998773  22


Q ss_pred             CCcC-CHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch
Q 006076          285 DLCP-NSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DV  356 (662)
Q Consensus       285 ~~~p-~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~  356 (662)
                        .| +..++..+...+..    .++.++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+  | +.
T Consensus       205 --~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  281 (472)
T 4g1t_A          205 --NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA  281 (472)
T ss_dssp             --CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             --CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence              34 44555555444443    467889999999988875 44677888999999999999999999998763  3 45


Q ss_pred             hHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076          357 VSWNSLISSYGVH-------------------GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM  417 (662)
Q Consensus       357 ~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~  417 (662)
                      .+|..+...|...                   +..++|+..|++..... +.+..++..+...+...|++++|...|+..
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence            5777776665432                   33567888888887743 234467788888999999999999999998


Q ss_pred             HHhcCCCCChH----HHHHHHH-HHhhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          418 RKEHMIRPSVE----HYACMVD-LLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       418 ~~~~~~~~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      .+.   .|+..    .+..+.. .+...|+.++|+..|++. .+.|+...+...         ...+..++++.++.+|+
T Consensus       361 L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~  428 (472)
T 4g1t_A          361 FSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGA  428 (472)
T ss_dssp             HHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-
T ss_pred             Hhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCC
Confidence            753   34332    2333333 235779999999999876 566765544333         34456778888899999


Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEE
Q 006076          492 NAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRI  533 (662)
Q Consensus       492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~  533 (662)
                      ++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|+
T Consensus       429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            999999999999999999999999999888765544455664

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.67  E-value=8.1e-15  Score=145.05  Aligned_cols=246  Identities=11%  Similarity=0.031  Sum_probs=202.0

Q ss_pred             HHHHHHcCChhHHHHHHHHHhhhhCCCcCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076          260 IACYARNGMAFEALELFREMIMESHDLCPNS--VTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR  337 (662)
Q Consensus       260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  337 (662)
                      |.-....|++..|+..++..  .  ...|+.  .....+..++...|+++.|...++.    .-+|+..++..+...|..
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~--~--~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~   77 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRV--K--PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLAS   77 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHS--C--CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhc--c--cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcC
Confidence            34556789999999999865  3  334543  3456677899999999999876543    245677888899999999


Q ss_pred             cCChHHHHHHHhhCC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 006076          338 CGKLELGQCVFDHMD----KR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKM  412 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  412 (662)
                      .|+.++|.+.++++.    .| +...+..+...|.+.|++++|++.+++      +.+...+..+...+.+.|++++|.+
T Consensus        78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~  151 (291)
T 3mkr_A           78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK  151 (291)
T ss_dssp             STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999864    24 456777888999999999999999987      4567888889999999999999999


Q ss_pred             HHHHhHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076          413 LFESMRKEHMIRPSVEH---YACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       413 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                      .++.+.+.   .|+...   ...++..+...|++++|..+|+++  ..+++...|+.+..++...|++++|+..++++++
T Consensus       152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  228 (291)
T 3mkr_A          152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD  228 (291)
T ss_dssp             HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999864   455321   233445566679999999999998  2345888999999999999999999999999999


Q ss_pred             cCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 006076          488 LEPTNAGNYVLLADVYAAADMWDE-VKRVKRLLEAR  522 (662)
Q Consensus       488 ~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~  522 (662)
                      .+|+++.++..++.++...|+.++ +.++++++.+.
T Consensus       229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999987 56888887763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=6.6e-17  Score=176.13  Aligned_cols=132  Identities=13%  Similarity=0.145  Sum_probs=109.2

Q ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 006076          321 LDSILPVVSALVTMYARCGKLELGQCVFDHMD-------KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPIS  393 (662)
Q Consensus       321 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  393 (662)
                      ...-..+||+||++|+++|++++|.++|++|.       .||++|||+||.||++.|++++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            33446689999999999999999999997653       58999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          394 FVSVLGACSHAGL-VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       394 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      |+++|.++++.|. .++|.++|++|. ..|+.||..+|++++....+.+-++...++..++
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f  262 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF  262 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence            9999999999887 478889999997 4689999999999988777765555544443333

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.65  E-value=1.6e-16  Score=173.12  Aligned_cols=151  Identities=14%  Similarity=0.102  Sum_probs=127.0

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC-------CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH
Q 006076          218 YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA-------VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS  290 (662)
Q Consensus       218 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~  290 (662)
                      ...-..+||+||++|+++|++++|.++|++|.       .||++|||+||.+|++.|+.++|.++|++|  ...|+.||.
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM--~~~G~~PDv  200 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV--KDAGLTPDL  200 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHTTCCCCH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCcH
Confidence            44456799999999999999999999997753       589999999999999999999999999999  999999999


Q ss_pred             HHHHHHHHHHHccCCH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHH
Q 006076          291 VTMVSVLQACAALAAL-EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-----RDVVSWNSLIS  364 (662)
Q Consensus       291 ~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~  364 (662)
                      +||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..     |.+.+-+.|.+
T Consensus       201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence            9999999999999984 78999999999999999999999999988887666666665544432     12334444555


Q ss_pred             HHHhcC
Q 006076          365 SYGVHG  370 (662)
Q Consensus       365 ~~~~~g  370 (662)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            566544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.61  E-value=1.9e-13  Score=137.43  Aligned_cols=224  Identities=11%  Similarity=-0.012  Sum_probs=121.8

Q ss_pred             hhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCHhHHHHHH
Q 006076          184 FTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA---VKNVVSWSAMI  260 (662)
Q Consensus       184 ~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li  260 (662)
                      ..+......+...++    +++|..++..+++.. +.+..++..+...|.+.|++++|...|+++.   ..+..+|..+.
T Consensus        22 ~~~~~~a~~~~~~~~----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   96 (327)
T 3cv0_A           22 ENPMEEGLSMLKLAN----LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   96 (327)
T ss_dssp             SCHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence            345555566666777    888888888877764 4466777777778888888888888877664   23566777777


Q ss_pred             HHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-HHHHHH-------------HH--HHccCCHHHHHHHHHHHHHhCCCCc
Q 006076          261 ACYARNGMAFEALELFREMIMESHDLCPNSV-TMVSVL-------------QA--CAALAALEQGKMIHGYILRRGLDSI  324 (662)
Q Consensus       261 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll-------------~a--~~~~~~~~~a~~~~~~~~~~g~~~~  324 (662)
                      ..|...|++++|++.|+++  ...  .|+.. .+..+.             ..  +...|++++|...++.+.+.. +.+
T Consensus        97 ~~~~~~~~~~~A~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~  171 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAW--LLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND  171 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--HHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred             HHHHHcCCHHHHHHHHHHH--HHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence            7888888888888888777  322  22222 121110             11  444555555555555555443 223


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      ..++..+...|.+.|++++|.+.|+++.   ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~  250 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY  250 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            4444445555555555555555544432   1223344444444444444444444444444421 11233444444444


Q ss_pred             hcCCCHHHHHHHHHHhH
Q 006076          402 SHAGLVEEGKMLFESMR  418 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~  418 (662)
                      ...|++++|.+.++.+.
T Consensus       251 ~~~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          251 SNMSQYDLAAKQLVRAI  267 (327)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHH
Confidence            44444444444444443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.61  E-value=4.1e-13  Score=142.97  Aligned_cols=367  Identities=10%  Similarity=-0.043  Sum_probs=219.9

Q ss_pred             hhHHHHHHHHhhcCCChHHHHHHHhcC------------CCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhC----CCC
Q 006076          115 PFLVTKLINVYSHFDSVDDARHVFDKT------------RRRTIYVWNALFRALTLAGRGEEVLELYRRMNGT----GTG  178 (662)
Q Consensus       115 ~~~~~~li~~y~~~g~~~~A~~~f~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~g  178 (662)
                      ...||.|...|...|+.++|++.|++.            .....++|+.+...|...|++++|...|++....    ...
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            344555555555566666655555432            1123456777777777777777777777665431    001


Q ss_pred             CCCC-hhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH---HhcCCHHHHHHHHHcCC---CC
Q 006076          179 IRSD-RFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY---ARFGCVMYAGFVFSQMA---VK  251 (662)
Q Consensus       179 ~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~g~~~~A~~~f~~~~---~~  251 (662)
                      ..++ ..++...-.++...+  .+.+++|.+.|..+++.. +.+...+..+...+   ...++.++|...|++..   ..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~--~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCG--GNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             cchhhHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence            1222 234444333333322  122899999999999875 44566666665554   34577777888777653   34


Q ss_pred             CHhHHHHHHHHHHH----cCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhH
Q 006076          252 NVVSWSAMIACYAR----NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPV  327 (662)
Q Consensus       252 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~  327 (662)
                      +...+..+...+..    .|+.++|.+.+++.  .... +.+...+..+...+...|++++|...+..+.+.. +.+..+
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--l~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  283 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEA--LEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL  283 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHH--HHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence            56667666655554    46778999999887  3322 3456678888889999999999999999999875 335667


Q ss_pred             HHHHHHHHHhc-------------------CChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076          328 VSALVTMYARC-------------------GKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH  385 (662)
Q Consensus       328 ~~~li~~y~~~-------------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  385 (662)
                      +..+...|...                   +..+.|...|+...   ..+..+|..+...|...|++++|++.|++..+.
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence            77777666432                   23556777776654   345678999999999999999999999999885


Q ss_pred             CCCCCHh--HHHHHHH-HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHH
Q 006076          386 GVSPSPI--SFVSVLG-ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPK  460 (662)
Q Consensus       386 g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~  460 (662)
                      ...|...  .+..+.. ...+.|+.++|...|....+   +.|+........         ..+..+++.. .. +.+..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~  431 (472)
T 4g1t_A          364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSE  431 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTT
T ss_pred             CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHH
Confidence            4333221  2222222 34578999999999999875   456544332222         2333344333 22 34678


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA  500 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  500 (662)
                      +|..|...+...|+.++|...++++++++|.+|.++.-++
T Consensus       432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            8999999999999999999999999999998887766554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=9.4e-14  Score=134.50  Aligned_cols=214  Identities=9%  Similarity=0.009  Sum_probs=155.2

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C----C----hhHHHHHHH
Q 006076          295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R----D----VVSWNSLIS  364 (662)
Q Consensus       295 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~----~~~~~~li~  364 (662)
                      .+...+...|++++|...+..+++..  .+..++..+...|...|++++|.+.|++..+  |    +    ..+|..+..
T Consensus        10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~   87 (258)
T 3uq3_A           10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN   87 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence            33344444444444444444444444  3444555555555555555555555555432  1    1    467777888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 006076          365 SYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE  444 (662)
Q Consensus       365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  444 (662)
                      .|...|++++|++.|++...  +.|+..       .+...|++++|...++.+.+..  +.+...+..+...+...|+++
T Consensus        88 ~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           88 AYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHH
Confidence            88888888888888888887  345532       3555677888888888886532  335677888889999999999


Q ss_pred             HHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          445 EAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       445 ~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +|...+++. .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...+++..+
T Consensus       157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999998887 22 346788889999999999999999999999999999999999999999999999999999988765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=1.3e-13  Score=130.11  Aligned_cols=195  Identities=13%  Similarity=0.075  Sum_probs=153.9

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 006076          322 DSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSV  397 (662)
Q Consensus       322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l  397 (662)
                      +++...+..+...+.+.|++++|...|++..+   .+...|..+...|.+.|++++|+..|++..+.  .|+ ...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            45666777888888899999999999887653   45678888899999999999999999998884  454 4677788


Q ss_pred             HHHHhcC-----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHHHHHHH
Q 006076          398 LGACSHA-----------GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSL  465 (662)
Q Consensus       398 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l  465 (662)
                      ..++...           |++++|...++...+..  +.+...+..+...|...|++++|+..|++. .+..+...|..+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l  157 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence            8888888           99999999999998642  336788999999999999999999999987 222788899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      ..++...|++++|...++++++++|+++..+..++.+|.+.|++++|...+++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999887653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.1e-13  Score=131.95  Aligned_cols=233  Identities=10%  Similarity=-0.034  Sum_probs=171.5

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--Cc----hhH
Q 006076          254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLD--SI----LPV  327 (662)
Q Consensus       254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~  327 (662)
                      ..|..+...+...|++++|+..|++.  ....  ++..++..+..++...|++++|...+..+++....  ++    ..+
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a--~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKA--WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH--HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHH--HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            45666666777777777777777776  3333  55666666777777777777777777776654311  11    467


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcC
Q 006076          328 VSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHA  404 (662)
Q Consensus       328 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~  404 (662)
                      +..+...|.+.|++++|...|++..+  |+.       ..+...|++++|+..++++...  .|+ ...+..+...+...
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHh
Confidence            77778888888888888888877653  432       3456677888899988888873  443 45677778888889


Q ss_pred             CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076          405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERAS  482 (662)
Q Consensus       405 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  482 (662)
                      |++++|...++.+.+..  +.+...+..+...|.+.|++++|...+++. ...| +..+|..+...+...|+.++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999887643  446788889999999999999999999877 2233 5788888999999999999999999


Q ss_pred             HHHHhcC------CCCcchHHHHHH
Q 006076          483 KRLFELE------PTNAGNYVLLAD  501 (662)
Q Consensus       483 ~~~~~~~------p~~~~~~~~l~~  501 (662)
                      ++++++.      |++...+..+..
T Consensus       231 ~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          231 DAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHhChhhcCCCchHHHHHHHHH
Confidence            9999888      776655555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=4e-13  Score=131.55  Aligned_cols=240  Identities=8%  Similarity=-0.112  Sum_probs=180.9

Q ss_pred             cCChhHHHHHHHHHhhhhCCC--cC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 006076          266 NGMAFEALELFREMIMESHDL--CP-NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE  342 (662)
Q Consensus       266 ~g~~~~A~~~~~~m~~~~~~~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  342 (662)
                      .|++++|++.|+++  .....  .| +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|+++
T Consensus        18 ~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           18 TLQQEVILARMEQI--LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CHHHHHHHHHHHHH--HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             cchHHHHHHHHHHH--HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            46677788888777  33221  11 34566667777777888888888888877764 335778888888888889999


Q ss_pred             HHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076          343 LGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK  419 (662)
Q Consensus       343 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  419 (662)
                      +|.+.|++..+   .+..+|..+...|...|++++|+..|+++.+  ..|+.......+..+...|++++|...++....
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            98888887753   4677899999999999999999999999988  456665555556666777999999999988775


Q ss_pred             hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          420 EHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       420 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      ..  +++...+ .++..+...++.++|.+.+++. ...|+     ..+|..+...+...|+.++|...++++++.+|++.
T Consensus       173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  249 (275)
T 1xnf_A          173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  249 (275)
T ss_dssp             HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence            43  4444444 4777788888889999999877 32332     57888999999999999999999999999999875


Q ss_pred             chHHHHHHHHHhcCChHHHHHHH
Q 006076          494 GNYVLLADVYAAADMWDEVKRVK  516 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A~~~~  516 (662)
                      ..+   ..++...|++++|.+.+
T Consensus       250 ~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          250 VEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHH---HHHHHHHHHHHHC----
T ss_pred             HHH---HHHHHHHHHHHhhHHHH
Confidence            444   66778889999987765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.51  E-value=1.1e-12  Score=128.28  Aligned_cols=241  Identities=12%  Similarity=-0.015  Sum_probs=128.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC--HHHHHHHHHHH
Q 006076          226 TTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPN--SVTMVSVLQAC  300 (662)
Q Consensus       226 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~--~~t~~~ll~a~  300 (662)
                      ......|.+.|++++|...|++..+   .+...|..+...|.+.|++++|++.|++.  ....-.|+  ...+..+...+
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY--FSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHH--HTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH--HhccCchhHHHHHHHHHHHHH
Confidence            3445556666666666666666532   23446666666666666666666666666  32221111  12244555555


Q ss_pred             HccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 006076          301 AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQ  377 (662)
Q Consensus       301 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~  377 (662)
                      ...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+   .+...|..+.              
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~--------------  149 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG--------------  149 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH--------------
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH--------------
Confidence            55555666655555555543 12334455555555555555555555554432   1233333333              


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhc-
Q 006076          378 IFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK---LEEAAKIIEDL-  453 (662)
Q Consensus       378 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-  453 (662)
                                           ..+...+++++|.+.|+.+.+..  +.+...+..+...+...|+   +++|...+++. 
T Consensus       150 ---------------------~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          150 ---------------------QAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             ---------------------HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence                                 12222335555555555544321  2224444444555554454   44444444433 


Q ss_pred             ---CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076          454 ---RIEPG------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA  506 (662)
Q Consensus       454 ---~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  506 (662)
                         ...|+      ..+|..+...|...|++++|...++++++++|+++.+...+..+....
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence               11122      246777888888899999999999999999999887777666655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.50  E-value=4.2e-12  Score=133.96  Aligned_cols=374  Identities=11%  Similarity=0.020  Sum_probs=197.6

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhcC--
Q 006076           86 LLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSV---DDARHVFDKTRRRTIYVWNALFRALTLAG--  160 (662)
Q Consensus        86 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g--  160 (662)
                      +...+.+.|++++|.+++....+.|   ++..+..|..+|...|+.   ++|...|++..+.++..+..|...+...|  
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            4455566788999999999988876   344555667777777887   89999998877667777777777565555  


Q ss_pred             ---CccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-
Q 006076          161 ---RGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFG-  236 (662)
Q Consensus       161 ---~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-  236 (662)
                         ++++|+..|++....  |...   .+..+-..+...+.... -..+.+.+......|   +......|..+|...+ 
T Consensus        86 ~~~~~~~A~~~~~~Aa~~--g~~~---A~~~Lg~~y~~~~~~~~-~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFAN--GEGN---TLIPLAMLYLQYPHSFP-NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHT--TCSS---CHHHHHHHHHHCGGGCT-TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHHC--CCHH---HHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence               677899999888876  4322   44444444444433111 123444444444444   2345555666666665 


Q ss_pred             ---CHHHHHHHHHcCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH
Q 006076          237 ---CVMYAGFVFSQMAVKNVVSWSAMIACYARNG---MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK  310 (662)
Q Consensus       237 ---~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~  310 (662)
                         ..+.+..++......++..+..|...|.+.|   +.++|++.|++.  ...| .++...+                 
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a--a~~g-~~~a~~~-----------------  216 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG--VSRG-TVTAQRV-----------------  216 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTT-CSCHHHH-----------------
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH--HHCC-CHHHHHH-----------------
Confidence               3344445555555555556666666666666   666666666655  3333 2222222                 


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhc----CChHHHHHHHhhCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHH
Q 006076          311 MIHGYILRRGLDSILPVVSALVTMYARC----GKLELGQCVFDHMDKRDVVSWNSLISS-Y--GVHGYGGKAIQIFKEMI  383 (662)
Q Consensus       311 ~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~  383 (662)
                                        ..|..+|...    +++++|.+.|+.....+...+..|... |  ...++.++|++.|++..
T Consensus       217 ------------------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          217 ------------------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             ------------------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence                              3333333322    455555555554442234455555544 2  34667777777777776


Q ss_pred             HcCCCCCHhHHHHHHHHHhcCC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhcC
Q 006076          384 YHGVSPSPISFVSVLGACSHAG-----LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDLR  454 (662)
Q Consensus       384 ~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~  454 (662)
                      +.|   +...+..+...|. .|     ++++|.++|+...     +-++..+..|..+|..    ..++++|...|++.-
T Consensus       279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  349 (452)
T 3e4b_A          279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA  349 (452)
T ss_dssp             HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence            655   4445555555554 34     7777777777664     2345666666666655    337777887777662


Q ss_pred             CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCChHHHHHHHHHHH
Q 006076          455 IEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPTNAGNYVLLADVY--AAADMWDEVKRVKRLLE  520 (662)
Q Consensus       455 ~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~  520 (662)
                      -..+......|...|..    ..+.++|...+++..+.++.+  .-..+..+.  ...++.++|.++.++-.
T Consensus       350 ~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          350 RNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             TTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            22344444555555543    347788888888887776542  333333332  22335556666665544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=5.1e-12  Score=121.93  Aligned_cols=197  Identities=12%  Similarity=-0.010  Sum_probs=154.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      ...+..+...|...|++++|.+.|+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            4566677777888888888888887765   2456678888888888888888888888887753 23556777778888


Q ss_pred             hcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHH
Q 006076          402 SHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELA  478 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a  478 (662)
                      ...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888864 22334 5667788888888888888888888876 223 3577788888888888899999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ...++++++..|++...+..++.+|.+.|++++|.+.++++.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999888888888888888888888888899999988888887643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=1e-11  Score=119.81  Aligned_cols=207  Identities=13%  Similarity=-0.001  Sum_probs=137.2

Q ss_pred             HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006076          253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALV  332 (662)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  332 (662)
                      ...|..+...+...|++++|++.|+++  .... +.+...+..+...+...|++++|...++.+.+..            
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~a--l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------  101 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKA--LEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------  101 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH--HhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------
Confidence            566778888888888888888888877  3221 1234444444455555555555555555554432            


Q ss_pred             HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHH
Q 006076          333 TMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGK  411 (662)
Q Consensus       333 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~  411 (662)
                                          ..+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|.
T Consensus       102 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A          102 --------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence                                12344555566666666666666666666655333443 345666666777777777777


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076          412 MLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELE  489 (662)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  489 (662)
                      ++++.+.+..  +.+...+..+...|.+.|++++|...++++ ... .+...|..+...+...|+.++|...++++.+..
T Consensus       162 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          162 EYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            7777776532  335677778888888888888888888776 323 456677778888888899999999999998888


Q ss_pred             CCCcchH
Q 006076          490 PTNAGNY  496 (662)
Q Consensus       490 p~~~~~~  496 (662)
                      |+++...
T Consensus       240 p~~~~~~  246 (252)
T 2ho1_A          240 PGSLEYQ  246 (252)
T ss_dssp             TTSHHHH
T ss_pred             CCCHHHH
Confidence            8875543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=8.4e-12  Score=117.80  Aligned_cols=195  Identities=12%  Similarity=0.028  Sum_probs=127.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      ..++..+...|...|++++|.+.|+++.   ..+...|..+...|...|++++|++.|+++.... +.+..++..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            4455556666666666666666666543   2345566666667777777777777777766642 22445666666677


Q ss_pred             hcC-CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076          402 SHA-GLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       402 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  477 (662)
                      ... |++++|...++.+.+ .+..| +...+..+...|.+.|++++|...++++ ...| +...|..+...+...|++++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            777 777777777777654 21222 3556667777777777777777777665 2223 46667777777777777777


Q ss_pred             HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          478 AERASKRLFELEP-TNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       478 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      |...++++++..| +++..+..++..+...|+.++|..+++.+..
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            7777777777777 6666777777777777777777777777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.46  E-value=2e-12  Score=123.89  Aligned_cols=169  Identities=11%  Similarity=0.035  Sum_probs=88.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC
Q 006076          329 SALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG  405 (662)
Q Consensus       329 ~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g  405 (662)
                      ..+...|.+.|++++|...|++..   ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus        61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~  139 (243)
T 2q7f_A           61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE  139 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence            333334444444444444443332   1234445555555555555555555555555532 223444555555555666


Q ss_pred             CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006076          406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASK  483 (662)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~  483 (662)
                      ++++|..+++.+.+..  +.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|+.++|...++
T Consensus       140 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  217 (243)
T 2q7f_A          140 QPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD  217 (243)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            6666666666555432  234555555666666666666666666554 11 2245556666666666666666666666


Q ss_pred             HHHhcCCCCcchHHHHH
Q 006076          484 RLFELEPTNAGNYVLLA  500 (662)
Q Consensus       484 ~~~~~~p~~~~~~~~l~  500 (662)
                      ++++..|+++..+..+.
T Consensus       218 ~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          218 KAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHCTTCHHHHHHHT
T ss_pred             HHHccCcchHHHHHHHH
Confidence            66666666555544443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.46  E-value=2.3e-12  Score=123.52  Aligned_cols=197  Identities=10%  Similarity=0.046  Sum_probs=156.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA  400 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  400 (662)
                      ....+..+...+.+.|++++|...|+++.+   .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            455677788888899999999999988753   467789999999999999999999999998853 3356788888899


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELA  478 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a  478 (662)
                      +...|++++|.++++.+.+..  +.+...+..+...|.+.|++++|...++++ .. +.+...|..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999998653  457888999999999999999999999987 22 34678899999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ...++++++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999987643

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=2.2e-11  Score=114.87  Aligned_cols=199  Identities=10%  Similarity=-0.064  Sum_probs=136.4

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhc-CChH
Q 006076          298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVH-GYGG  373 (662)
Q Consensus       298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~~~  373 (662)
                      ..+...|++++|...++.+++.. +.+...+..+...|...|++++|.+.|++..   ..+..+|..+...|... |+++
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~   94 (225)
T 2vq2_A           16 MEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA   94 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence            33333444444444444433332 1234455555566666666666666666543   23556777777788888 8888


Q ss_pred             HHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 006076          374 KAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIED  452 (662)
Q Consensus       374 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  452 (662)
                      +|+..|+++.+.+..|+ ...+..+..++...|++++|...++.+.+..  +.+...+..+...|.+.|++++|...+++
T Consensus        95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A           95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888888877333344 4567777778888888888888888887542  34577888888899999999999988887


Q ss_pred             c-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          453 L-RI-E-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       453 m-~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                      + .. + .+...|..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            6 22 2 4667777777788889999999999999998899876655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.45  E-value=1.4e-11  Score=126.10  Aligned_cols=243  Identities=11%  Similarity=0.027  Sum_probs=194.5

Q ss_pred             HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCCCchhHHHH
Q 006076          253 VVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAALAA-LEQGKMIHGYILRRGLDSILPVVSA  330 (662)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~  330 (662)
                      ...|+.+...+.+.|++++|++.|++.+  .  +.| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al--~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~  171 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAI--E--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH  171 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHH--H--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence            4567888888888899999999988873  2  234 45667777778888886 999999998888875 336778888


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc-CC
Q 006076          331 LVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSH-AG  405 (662)
Q Consensus       331 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g  405 (662)
                      +..+|.+.|++++|...|+++.+   .+...|..+..++.+.|++++|+..|+++++.  .| +...|..+..++.. .|
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999998763   57789999999999999999999999999985  44 45788888888888 56


Q ss_pred             CHHHH-----HHHHHHhHHhcCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC----
Q 006076          406 LVEEG-----KMLFESMRKEHMIRPSVEHYACMVDLLGRAN--KLEEAAKIIEDLRIEP-GPKVWGSLLGSCRIHC----  473 (662)
Q Consensus       406 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g----  473 (662)
                      ..++|     +..++...+..  +-+...|..+..+|.+.|  ++++|.+.+.++...| +...+..+...+...|    
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             cchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence            65777     47888877542  336778999999999988  6899999998885455 5677888888888764    


Q ss_pred             -----CHHHHHHHHHHH-HhcCCCCcchHHHHHHHHH
Q 006076          474 -----NVELAERASKRL-FELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       474 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~  504 (662)
                           ..++|..+++++ .+++|.....|..++..+.
T Consensus       328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence                 258999999999 8999998888887776664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.44  E-value=5.9e-11  Score=116.14  Aligned_cols=228  Identities=11%  Similarity=-0.042  Sum_probs=119.2

Q ss_pred             CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhH
Q 006076          252 NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA----LAALEQGKMIHGYILRRGLDSILPV  327 (662)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~  327 (662)
                      +..++..+...|.+.|++++|++.|++.  ...+   +...+..+...+..    .+++++|...++...+.+   +...
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a--~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a   76 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKA--CDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG   76 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence            4556666666677777777777777666  3321   33444444455555    555666665555555543   3444


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----
Q 006076          328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH----  403 (662)
Q Consensus       328 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----  403 (662)
                      +..+..+|...                           ....+++++|++.|++..+.+   +...+..+...+..    
T Consensus        77 ~~~lg~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~  126 (273)
T 1ouv_A           77 CHLLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV  126 (273)
T ss_dssp             HHHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence            44444444440                           000445555555555444432   33444444444444    


Q ss_pred             CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCH
Q 006076          404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNV  475 (662)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~  475 (662)
                      .+++++|...|+...+. +   +...+..+...|..    .+++++|...+++.--..+...+..+...+..    .++.
T Consensus       127 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~  202 (273)
T 1ouv_A          127 TRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF  202 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred             ccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence            55555555555555431 1   33444445555554    55555555555544111234455555555555    5666


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 006076          476 ELAERASKRLFELEPTNAGNYVLLADVYAA----ADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~  523 (662)
                      ++|...++++.+.+|  +..+..|+.+|..    .|++++|.+.+++..+.|
T Consensus       203 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          203 KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            666666666665544  3455566666666    666666666666555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.44  E-value=5.3e-11  Score=116.43  Aligned_cols=231  Identities=8%  Similarity=-0.120  Sum_probs=158.6

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CHhHHHHHHHHHHH----cCChhHHHHHHHHHhhhhCCCcCCHHHHH
Q 006076          220 GIVHIMTTLIDMYARFGCVMYAGFVFSQMAVK-NVVSWSAMIACYAR----NGMAFEALELFREMIMESHDLCPNSVTMV  294 (662)
Q Consensus       220 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~t~~  294 (662)
                      .+..++..+...|.+.|++++|...|++..++ +..++..+...|..    .+++++|++.|++.  ...+   +...+.
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--~~~~---~~~a~~   78 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--CDLN---YSNGCH   78 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH--HHCC---CHHHHH
Confidence            35677888999999999999999999987655 67788999999999    99999999999998  5554   677777


Q ss_pred             HHHHHHHc----cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 006076          295 SVLQACAA----LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHG  370 (662)
Q Consensus       295 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g  370 (662)
                      .+...+..    .+++++|...++.+.+.+   +...+..+..+|.+..                           ...+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~  128 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTR  128 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCC
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------Cccc
Confidence            88888888    889999999988887764   4555555555555500                           0044


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCC
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANK  442 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~  442 (662)
                      ++++|++.|++..+.+   +...+..+...+..    .+++++|...|+...+.    .+...+..+...|..    .++
T Consensus       129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~  201 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKN  201 (273)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCC
T ss_pred             CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcc
Confidence            4555555555554433   33344444445554    56666666666665532    234555666666666    677


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 006076          443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       443 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      +++|.+.+++.--..+...+..+...+..    .++.++|...++++.+.+|++
T Consensus       202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            77777776665111235566667777776    778888888888888877753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=1.3e-11  Score=116.26  Aligned_cols=192  Identities=15%  Similarity=0.047  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076          254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT  333 (662)
Q Consensus       254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  333 (662)
                      ..|..+...+.+.|++++|+..|++.  .... +.+...+..+..++...|++++|...++.+++.. +.+...+..+..
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~   81 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERA--LKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE   81 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH--HTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            34444445555555555555555544  1111 1133344444444445555555555555554443 223444555555


Q ss_pred             HHHhc-----------CChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 006076          334 MYARC-----------GKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLG  399 (662)
Q Consensus       334 ~y~~~-----------g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  399 (662)
                      .|.+.           |++++|...|++..+  | +...|..+...|...|++++|+..|++..+..  .+...+..+..
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~  159 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence            55555           666666666665542  2 44566666666777777777777777766654  55666666666


Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      ++...|++++|...|+...+..  +.+...+..+...+.+.|++++|...+++.
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            7777777777777777666432  334566666667777777777776666654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=1.1e-11  Score=126.83  Aligned_cols=226  Identities=8%  Similarity=0.035  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhhCCC---CChhHHHHHHHH
Q 006076          290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK-LELGQCVFDHMDK---RDVVSWNSLISS  365 (662)
Q Consensus       290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~~  365 (662)
                      ...|..+..++...|++++|...++.+++.. +.+..+|+.+...|.+.|+ +++|...|++..+   .+...|+.+...
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3456667777888999999999999999885 3467889999999999997 9999999998863   467899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCH
Q 006076          366 YGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR-ANKL  443 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~  443 (662)
                      |...|++++|+..|+++.+.  .| +...|..+..++...|++++|+..++.+.+..  +.+...|+.+..+|.+ .|..
T Consensus       176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999994  45 55788899999999999999999999998653  3468899999999999 6665


Q ss_pred             HHH-----HHHHHhc-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------
Q 006076          444 EEA-----AKIIEDL-RIEP-GPKVWGSLLGSCRIHC--NVELAERASKRLFELEPTNAGNYVLLADVYAAAD-------  507 (662)
Q Consensus       444 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------  507 (662)
                      ++|     ++.|++. .+.| +...|..+...+...|  +.++|...++++ +.+|+++.++..|+++|.+.|       
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            777     4667665 3445 6778999999898888  689999999998 889999999999999999875       


Q ss_pred             --ChHHHHHHHHHH-Hh
Q 006076          508 --MWDEVKRVKRLL-EA  521 (662)
Q Consensus       508 --~~~~A~~~~~~m-~~  521 (662)
                        .+++|.++++++ .+
T Consensus       331 ~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          331 EDILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence              358999999998 54

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.40  E-value=4.4e-12  Score=132.22  Aligned_cols=196  Identities=10%  Similarity=-0.007  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 006076          326 PVVSALVTMYARCGKLELGQCVFDHMDK---------RDVVSWNSLISSYGVHGY-----------------GGKAIQIF  379 (662)
Q Consensus       326 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~  379 (662)
                      .++..+...|...|++++|...|++..+         ....+|..+...|...|+                 +++|++.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            3444555555555666655555554431         123356666666777777                 77777776


Q ss_pred             HHHHHc----CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHH
Q 006076          380 KEMIYH----GVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKII  450 (662)
Q Consensus       380 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~  450 (662)
                      ++..+.    +-.| ...++..+...+...|++++|...++...+...-.++    ...+..+...|...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            665432    1111 1246666777778888888888888777543211111    236778888888888888888888


Q ss_pred             Hhc-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCChHHHHHHH
Q 006076          451 EDL-RI---EP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT------NAGNYVLLADVYAAADMWDEVKRVK  516 (662)
Q Consensus       451 ~~m-~~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~  516 (662)
                      ++. ..   ..    ...++..+...+...|++++|...++++++..+.      ...++..++.+|.+.|++++|.+.+
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  366 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA  366 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            765 11   11    1456778888888999999999999988876433      2347888999999999999999999


Q ss_pred             HHHHh
Q 006076          517 RLLEA  521 (662)
Q Consensus       517 ~~m~~  521 (662)
                      ++..+
T Consensus       367 ~~al~  371 (411)
T 4a1s_A          367 EQHLQ  371 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.40  E-value=1.4e-11  Score=128.00  Aligned_cols=195  Identities=12%  Similarity=0.043  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHH
Q 006076          327 VVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGY--------------------GGKAIQ  377 (662)
Q Consensus       327 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~  377 (662)
                      ++..+...|...|++++|...|++..+     ++    ..+|..+...|...|+                    +++|++
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            444455555555555555555554431     11    2355566666666666                    666666


Q ss_pred             HHHHHHHc----CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHH
Q 006076          378 IFKEMIYH----GVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAK  448 (662)
Q Consensus       378 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~  448 (662)
                      .+.+....    +-.|. ..++..+...+...|++++|...++...+...-.++    ...+..+...|...|++++|..
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            66655431    11111 235566666777777777777777766542211111    2367777777888888888877


Q ss_pred             HHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChHHHHH
Q 006076          449 IIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN------AGNYVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       449 ~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~  514 (662)
                      .+++.    +..++    ..++..+...+...|++++|...+++++++.+..      ..++..++.+|...|++++|.+
T Consensus       249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            77765    11112    4566777778888888888888888887654332      4467778888888888888888


Q ss_pred             HHHHHHh
Q 006076          515 VKRLLEA  521 (662)
Q Consensus       515 ~~~~m~~  521 (662)
                      .+++..+
T Consensus       329 ~~~~al~  335 (406)
T 3sf4_A          329 FAEKHLE  335 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.40  E-value=2.8e-11  Score=118.16  Aligned_cols=226  Identities=8%  Similarity=-0.036  Sum_probs=169.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHH
Q 006076          294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYG  367 (662)
Q Consensus       294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~  367 (662)
                      ......+...|++++|...++.+++.. +.+...+..+...|...|++++|...|++..+  ++    ..+|..+...|.
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            334445556666666666666666553 22344666677777778888888777776543  22    224888889999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076          368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA  447 (662)
Q Consensus       368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  447 (662)
                      ..|++++|++.|++..+.. +.+..++..+...+...|++++|...++...+.  -+.+...+..+...+...+++++|.
T Consensus        86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998853 234578888999999999999999999988743  2346777888883444456999999


Q ss_pred             HHHHhc-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCChHHHHH
Q 006076          448 KIIEDL-RIEP-GPKVWGSLLGSCRIHCN---VELAERASKRLFELE---PTN-----AGNYVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       448 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~  514 (662)
                      +.|+++ ...| +...|..+...+...|+   .++|...++++++..   |+.     ..+|..++..|.+.|++++|.+
T Consensus       163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999987 3344 46778888888888888   888999999998764   442     2578889999999999999999


Q ss_pred             HHHHHHhCC
Q 006076          515 VKRLLEARG  523 (662)
Q Consensus       515 ~~~~m~~~~  523 (662)
                      .+++..+.+
T Consensus       243 ~~~~al~~~  251 (272)
T 3u4t_A          243 AWKNILALD  251 (272)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999988643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.40  E-value=4.4e-11  Score=109.26  Aligned_cols=164  Identities=12%  Similarity=0.085  Sum_probs=133.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006076          355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACM  433 (662)
Q Consensus       355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  433 (662)
                      +...|..+...|.+.|++++|++.|++..+.  .| +..++..+..++.+.|++++|...+.......  +.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence            4567788888888888888888888888774  44 44677777788888888888888888886542  4456777778


Q ss_pred             HHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076          434 VDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE  511 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  511 (662)
                      ...+...+++++|.+.+.+. ... .+...|..+...+...|++++|+..++++++++|+++.+|..++.+|.+.|++++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            88888888998888888876 223 3677888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 006076          512 VKRVKRLLEAR  522 (662)
Q Consensus       512 A~~~~~~m~~~  522 (662)
                      |.+.+++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999887764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.39  E-value=1.9e-09  Score=117.68  Aligned_cols=419  Identities=10%  Similarity=0.018  Sum_probs=275.0

Q ss_pred             CCCCHhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCC---hHHHHHHHhcCCC-----CCcc
Q 006076           76 PNPTQHTYELLLLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDS---VDDARHVFDKTRR-----RTIY  147 (662)
Q Consensus        76 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~-----~~~~  147 (662)
                      .+-|..+|..++..+.+.+.++.++.+++.+++. ++.....|...+..-.+.|.   .+.+..+|++...     +++.
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~  140 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS  140 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence            4568888889998888888899999999998887 46677788888888888888   8999999986543     5677


Q ss_pred             hHHHHHHHHHhcCCc--------cHHHHHHHHHhhCCCCC-CCCh-hhHHHHHHHHHhCCC-----CccchHHHHHHHHH
Q 006076          148 VWNALFRALTLAGRG--------EEVLELYRRMNGTGTGI-RSDR-FTYTYVLKACVASSC-----GFSLLKHGKEIHAS  212 (662)
Q Consensus       148 ~~~~li~~~~~~g~~--------~~A~~l~~~m~~~~~g~-~p~~-~t~~~ll~~~~~~~~-----~~~~~~~a~~~~~~  212 (662)
                      .|...+.-..+.++.        +...++|+..+..- |. .|+. ..|...+.-......     ..+.++.++.++..
T Consensus       141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v-G~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r  219 (679)
T 4e6h_A          141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC-AIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT  219 (679)
T ss_dssp             HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence            788877765555543        23346777655431 55 5543 344444443322110     01126778888888


Q ss_pred             HHHhCCCCchhHHHHHHHHHHh-------------cCCHHHHHHHHHcC-----------CC----------C--C----
Q 006076          213 VLRHGYNGIVHIMTTLIDMYAR-------------FGCVMYAGFVFSQM-----------AV----------K--N----  252 (662)
Q Consensus       213 ~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~-----------~~----------~--~----  252 (662)
                      ++......-..+|......--.             ..+++.|...+.++           +.          |  +    
T Consensus       220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~  299 (679)
T 4e6h_A          220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV  299 (679)
T ss_dssp             HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred             HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence            8753222222333322221111             12234455555431           11          0  0    


Q ss_pred             --HhHHHHHHHHHHHcCC-------hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHhCCC
Q 006076          253 --VVSWSAMIACYARNGM-------AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGK-MIHGYILRRGLD  322 (662)
Q Consensus       253 --~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~  322 (662)
                        ...|...+.---.++.       .+.+..+|++.+  .. .+-+...|.....-+...|+.+.|. .+++.++.. .+
T Consensus       300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL--~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P  375 (679)
T 4e6h_A          300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA--QH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP  375 (679)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH--HH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred             HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH--HH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence              2346555554333321       233456677763  21 2235566666666677788888896 999999875 34


Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------CC------------hhHHHHHHHHHHhcCChHHHHH
Q 006076          323 SILPVVSALVTMYARCGKLELGQCVFDHMDK-------------RD------------VVSWNSLISSYGVHGYGGKAIQ  377 (662)
Q Consensus       323 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~  377 (662)
                      .+...+-.++..+-+.|+++.|.++|+.+.+             |+            ...|...+....+.|..+.|..
T Consensus       376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~  455 (679)
T 4e6h_A          376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK  455 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence            5677788889999999999999999987753             31            2368888888888899999999


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhcC-CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC
Q 006076          378 IFKEMIYHGVSPSPISFVSVLGACSHA-GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI  455 (662)
Q Consensus       378 ~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~  455 (662)
                      +|.+..+.-..+....|......-.+. ++.+.|..+|+...+.+  +.+...+...++.....|+.+.|..+|++. ..
T Consensus       456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999998751112233443332222333 55899999999998764  556777888999999999999999999987 22


Q ss_pred             CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          456 EP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       456 ~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      .|    ....|...+.--..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus       534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry  584 (679)
T 4e6h_A          534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY  584 (679)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence            33    346799999988999999999999999999999864 334444444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.39  E-value=3.9e-12  Score=135.14  Aligned_cols=208  Identities=9%  Similarity=-0.025  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          307 EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL-ELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEM  382 (662)
Q Consensus       307 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m  382 (662)
                      +.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+   .+...|..+...|...|++++|++.|++.
T Consensus        85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444433322 233566677777777777887 888877776642   34678888999999999999999999998


Q ss_pred             HHcCCCCCHhHHHHHHHHHhcC---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc--------CCHHH
Q 006076          383 IYHGVSPSPISFVSVLGACSHA---------GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA--------NKLEE  445 (662)
Q Consensus       383 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~  445 (662)
                      .+  +.|+...+..+..++...         |++++|.+.++...+..  +.+...|..+..+|...        |++++
T Consensus       164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            88  467778888888899998         99999999999988643  44688899999999988        99999


Q ss_pred             HHHHHHhc-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          446 AAKIIEDL-RIEP----GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLL  519 (662)
Q Consensus       446 A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  519 (662)
                      |++.|++. ...|    +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999987 3345    78899999999999999999999999999999999999999999999999999999866543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.39  E-value=2.4e-11  Score=128.13  Aligned_cols=308  Identities=12%  Similarity=0.057  Sum_probs=208.6

Q ss_pred             HHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHcCCCCCHhHHHHHHHHHHHcC-
Q 006076          192 ACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCV---MYAGFVFSQMAVKNVVSWSAMIACYARNG-  267 (662)
Q Consensus       192 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-  267 (662)
                      .+.+.++    +++|.+++..+.+.|.   ...+..|..+|...|+.   ++|...|++..+.++..+..+...+...| 
T Consensus        12 ~~~~~g~----~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~   84 (452)
T 3e4b_A           12 EALKRGD----TVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG   84 (452)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred             HHHhCCC----HHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence            3444556    9999999999988873   33445677777778888   89999999987777777888887666665 


Q ss_pred             ----ChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076          268 ----MAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL---EQGKMIHGYILRRGLDSILPVVSALVTMYARCGK  340 (662)
Q Consensus       268 ----~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  340 (662)
                          ++++|+..|++.  ...|. |+  .+..+...+...+..   ..+.+.+....+.|   ++.....|..+|...+.
T Consensus        85 ~~~~~~~~A~~~~~~A--a~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           85 ATEAEHHEAESLLKKA--FANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             CCHHHHHHHHHHHHHH--HHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHH--HHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence                678999999988  55553 22  455555556554443   33444555555555   45677778888888884


Q ss_pred             ----hHHHHHHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcC----CCHHH
Q 006076          341 ----LELGQCVFDHMDKRDVVSWNSLISSYGVHG---YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHA----GLVEE  409 (662)
Q Consensus       341 ----~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~  409 (662)
                          .+.+..+++.....++.++..|...|...|   +.++|++.|++..+.| .++...+..+...|...    +++++
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence                455666677777777779999999999999   8999999999998876 44555555666666554    78999


Q ss_pred             HHHHHHHhHHhcCCCCChHHHHHHHHH-H--hhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 006076          410 GKMLFESMRKEHMIRPSVEHYACMVDL-L--GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHC-----NVELAERA  481 (662)
Q Consensus       410 a~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~  481 (662)
                      |..+|+...     +-++..+..|..+ |  ...|++++|.+.|++.--..+...+..|...|. .|     +.++|...
T Consensus       236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            999999875     3456677777777 4  568899999999998732347777777777776 55     99999999


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 006076          482 SKRLFELEPTNAGNYVLLADVYAA----ADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       482 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  524 (662)
                      +++..   |.++.++..|+.+|..    ..++++|.+.+++..+.|.
T Consensus       310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  353 (452)
T 3e4b_A          310 FEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ  353 (452)
T ss_dssp             HHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence            99988   7788899999999887    3489999999998887664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.39  E-value=1.4e-11  Score=124.01  Aligned_cols=229  Identities=13%  Similarity=0.031  Sum_probs=148.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhH
Q 006076          293 MVSVLQACAALAALEQGKMIHGYILRR----GLD-SILPVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVS  358 (662)
Q Consensus       293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~  358 (662)
                      +..+...+...|++++|...+..+.+.    +.. ....++..+...|...|++++|...|++..+     ++    ..+
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  125 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  125 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            334444444555555555554444322    111 1134555566666666666666666655431     11    236


Q ss_pred             HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhcCCCHHHHHHH
Q 006076          359 WNSLISSYGVHGY--------------------GGKAIQIFKEMIYH----GVSPS-PISFVSVLGACSHAGLVEEGKML  413 (662)
Q Consensus       359 ~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~  413 (662)
                      |..+...|...|+                    +++|++.+++....    +-.|. ..++..+...+...|++++|.+.
T Consensus       126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  205 (338)
T 3ro2_A          126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  205 (338)
T ss_dssp             HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6667777777777                    77777777665432    11111 23566677778888888888888


Q ss_pred             HHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 006076          414 FESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERA  481 (662)
Q Consensus       414 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~  481 (662)
                      ++...+...-.++    ...+..+...|...|++++|...+++.    +..++    ..++..+...+...|++++|...
T Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (338)
T 3ro2_A          206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  285 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            8877543211111    337788888889999999999888765    11122    45677888889999999999999


Q ss_pred             HHHHHhcCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          482 SKRLFELEPTN------AGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       482 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ++++++..|..      ..++..++.+|.+.|++++|...+++..+
T Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            99988764432      34778899999999999999999998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.38  E-value=1.5e-11  Score=127.70  Aligned_cols=154  Identities=10%  Similarity=-0.013  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----h
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPS----PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----V  427 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~  427 (662)
                      .+|..+...|...|++++|+..|++..+... .++    ..++..+...+...|++++|...++...+...-.++    .
T Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  267 (406)
T 3sf4_A          188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  267 (406)
T ss_dssp             HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence            4677777888888888888888887765210 112    236777778888889999998888877643211111    5


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCc
Q 006076          428 EHYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEP------TNA  493 (662)
Q Consensus       428 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~  493 (662)
                      .++..+...|.+.|++++|...+++.    +..++    ..++..+...+...|++++|...+++++++.+      ...
T Consensus       268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  347 (406)
T 3sf4_A          268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL  347 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            67788889999999999999988876    11122    55778888899999999999999999887532      234


Q ss_pred             chHHHHHHHHHhcCChH
Q 006076          494 GNYVLLADVYAAADMWD  510 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~  510 (662)
                      .++..++.+|...|+..
T Consensus       348 ~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          348 TARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhhHhH
Confidence            56777888888777654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.37  E-value=2e-11  Score=119.30  Aligned_cols=217  Identities=11%  Similarity=-0.004  Sum_probs=179.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHH
Q 006076          302 ALAALEQGKMIHGYILRRGLD---SILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKA  375 (662)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A  375 (662)
                      ..+++++|...++.+++....   .+..++..+...|...|++++|...|++..   ..+..+|..+...|...|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            457899999999999886422   246788899999999999999999999876   34678999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--
Q 006076          376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--  453 (662)
Q Consensus       376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--  453 (662)
                      ++.|++..+.. +.+..++..+...+...|++++|...|+.+.+.   .|+..........+...|++++|...+++.  
T Consensus        97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999853 335678889999999999999999999999864   465555555666667889999999999766  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          454 RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT----NAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       454 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ..+++...|. ++..+...++.++|...++++++..|.    ++..+..++.+|.+.|++++|...+++....+
T Consensus       173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            2234444554 777778888899999999999887663    36788999999999999999999999998643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.32  E-value=2.2e-11  Score=126.92  Aligned_cols=265  Identities=11%  Similarity=0.008  Sum_probs=172.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC--C-CH----hHHHHHHHHHHHcCChhHHHHHHHHHhhhh--CCC-cCCHHHHHHH
Q 006076          227 TLIDMYARFGCVMYAGFVFSQMAV--K-NV----VSWSAMIACYARNGMAFEALELFREMIMES--HDL-CPNSVTMVSV  296 (662)
Q Consensus       227 ~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~p~~~t~~~l  296 (662)
                      .+...+...|++++|...|++..+  + +.    ..|..+...|...|++++|+..|++.....  .+- .....++..+
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            344455566666666666655431  1 22    345566666666666666666666553110  111 1123345555


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------hHHHHHHHhhCCC-
Q 006076          297 LQACAALAALEQGKMIHGYILRR----G-LDSILPVVSALVTMYARCGK-----------------LELGQCVFDHMDK-  353 (662)
Q Consensus       297 l~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~m~~-  353 (662)
                      ...+...|++++|...+..+++.    + ......++..+...|...|+                 +++|.+.|++..+ 
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            55566666666666666665443    1 11124466667777777777                 7777776665431 


Q ss_pred             --------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHhcCCCHHHHHHHHHHhHHh
Q 006076          354 --------RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PS----PISFVSVLGACSHAGLVEEGKMLFESMRKE  420 (662)
Q Consensus       354 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  420 (662)
                              ....+|..+...|...|++++|++.|++..+.... ++    ..++..+...+...|++++|...++...+.
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence                    12347778888888999999999998887663110 12    136777888899999999999999887643


Q ss_pred             cCCC----CChHHHHHHHHHHhhcCCHHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          421 HMIR----PSVEHYACMVDLLGRANKLEEAAKIIEDLR-I---EPG----PKVWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       421 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                      ..-.    .....+..+...|...|++++|...+++.- +   .++    ..++..+...+...|+.++|...+++++++
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            2101    125678889999999999999999988761 1   112    346778889999999999999999999987


Q ss_pred             CCC
Q 006076          489 EPT  491 (662)
Q Consensus       489 ~p~  491 (662)
                      .+.
T Consensus       373 ~~~  375 (411)
T 4a1s_A          373 AXX  375 (411)
T ss_dssp             CCH
T ss_pred             Hhh
Confidence            654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=1.4e-09  Score=108.50  Aligned_cols=219  Identities=11%  Similarity=0.029  Sum_probs=154.8

Q ss_pred             hHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076          270 FEALELFREMIMESHDLCPNSVTMVSVLQACA-------ALAAL-------EQGKMIHGYILRRGLDSILPVVSALVTMY  335 (662)
Q Consensus       270 ~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y  335 (662)
                      ++|+..|++..  .. .+-+...|......+.       ..|++       ++|..+++.+++.-.+.+...+..++..+
T Consensus        33 ~~a~~~~~~al--~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCL--LV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHH--HH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45666666663  21 1123444444444443       24654       77777777777632233566788888888


Q ss_pred             HhcCChHHHHHHHhhCCC--CC-hh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-hcCCCHHHH
Q 006076          336 ARCGKLELGQCVFDHMDK--RD-VV-SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC-SHAGLVEEG  410 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~--~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a  410 (662)
                      .+.|++++|.++|++..+  |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888887653  32 33 78888888888899999999999888743 23334444333332 236899999


Q ss_pred             HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006076          411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R---IEP--GPKVWGSLLGSCRIHCNVELAERASKR  484 (662)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~  484 (662)
                      ..+|+...+..  +.+...|..++..+.+.|++++|..+|++. .   +.|  ....|..++......|+.+.|..++++
T Consensus       189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999887653  446788888999999999999999999877 2   344  466888888888889999999999999


Q ss_pred             HHhcCCCCcc
Q 006076          485 LFELEPTNAG  494 (662)
Q Consensus       485 ~~~~~p~~~~  494 (662)
                      +.+..|++..
T Consensus       267 a~~~~p~~~~  276 (308)
T 2ond_A          267 RFTAFREEYE  276 (308)
T ss_dssp             HHHHTTTTTS
T ss_pred             HHHHcccccc
Confidence            9998887543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=9.3e-11  Score=107.06  Aligned_cols=166  Identities=13%  Similarity=0.052  Sum_probs=139.5

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA  400 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  400 (662)
                      +..+|..|...|.+.|++++|.+.|++..+   .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            566788888889999999999998887652   466788999999999999999999999988753 3345667777778


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELA  478 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a  478 (662)
                      +...++++.+...+....+..  +.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            889999999999999987643  446788999999999999999999999887 3344 678899999999999999999


Q ss_pred             HHHHHHHHhcCCCC
Q 006076          479 ERASKRLFELEPTN  492 (662)
Q Consensus       479 ~~~~~~~~~~~p~~  492 (662)
                      ...++++++++|++
T Consensus       161 ~~~~~~al~~~p~~  174 (184)
T 3vtx_A          161 VKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHTTHHH
T ss_pred             HHHHHHHHhCCccC
Confidence            99999999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.31  E-value=9.2e-11  Score=117.89  Aligned_cols=199  Identities=11%  Similarity=0.017  Sum_probs=122.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 006076          293 MVSVLQACAALAALEQGKMIHGYILRRGLD-SI----LPVVSALVTMYARCGK--------------------LELGQCV  347 (662)
Q Consensus       293 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~y~~~g~--------------------~~~A~~~  347 (662)
                      +..+...+...|++++|...+..+.+.... ++    ..++..+...|...|+                    +++|.+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            334444444455555555555444332100 01    2245555556666666                    5666555


Q ss_pred             HhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhcCCCHHHHHHH
Q 006076          348 FDHMDK-----R----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPS----PISFVSVLGACSHAGLVEEGKML  413 (662)
Q Consensus       348 ~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~  413 (662)
                      +++..+     +    ...+|..+...|...|++++|++.+++..+... .++    ..++..+...+...|++++|..+
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            554321     1    133667777777888888888888877664210 011    23666777778888888888888


Q ss_pred             HHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 006076          414 FESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL-RI---EPG----PKVWGSLLGSCRIHCNVELAERA  481 (662)
Q Consensus       414 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~  481 (662)
                      ++...+...-.++    ...+..+...|...|++++|...+++. ..   .++    ..++..+...+...|++++|...
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            8877543211111    556778888888999999998888765 11   112    44677888889999999999999


Q ss_pred             HHHHHhcCCC
Q 006076          482 SKRLFELEPT  491 (662)
Q Consensus       482 ~~~~~~~~p~  491 (662)
                      +++++++.+.
T Consensus       326 ~~~a~~~~~~  335 (338)
T 3ro2_A          326 AEKHLEISRE  335 (338)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.30  E-value=9.7e-12  Score=123.87  Aligned_cols=239  Identities=11%  Similarity=0.074  Sum_probs=123.8

Q ss_pred             HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhC-----CCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CC
Q 006076          253 VVSWSAMIACYARNGMAFEALELFREMIMESH-----DLCPNSVTMVSVLQACAALAALEQGKMIHGYILRR------GL  321 (662)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~  321 (662)
                      ..+|..+...|...|++++|+.+|+++.....     .......++..+...+...|++++|...++.+++.      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            45677778888888888888888887731100     11122344455555556666666666666555443      11


Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhHH
Q 006076          322 DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH------GVSPS-PISF  394 (662)
Q Consensus       322 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~  394 (662)
                      .+                              ....+|..+...|...|++++|++.|++..+.      +-.|+ ...+
T Consensus       107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  156 (311)
T 3nf1_A          107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL  156 (311)
T ss_dssp             CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            11                              11234444555555555555555555554442      11121 2345


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhHHhc-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC----------CCCC
Q 006076          395 VSVLGACSHAGLVEEGKMLFESMRKEH-----M-IRPSVEHYACMVDLLGRANKLEEAAKIIEDLR----------IEPG  458 (662)
Q Consensus       395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~  458 (662)
                      ..+...+...|++++|.++++.+.+..     + -+.....+..+...|.+.|++++|.+.++++-          ..+.
T Consensus       157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  236 (311)
T 3nf1_A          157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE  236 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            555556666666666666666554320     0 11123455666666666666666666665541          0111


Q ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          459 -------PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       459 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                             ...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   111222233344455566666677777777777777888888888888888888888887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.29  E-value=6.5e-11  Score=130.86  Aligned_cols=162  Identities=16%  Similarity=0.217  Sum_probs=136.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006076          356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMV  434 (662)
Q Consensus       356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  434 (662)
                      ..+|+.|...|.+.|++++|++.|++..+  +.|+ ..++..+..++.+.|++++|.+.|++..+..  +-+...|..+.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg   84 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            45788888888888888888888888887  4555 4678888888888999999999998887542  23577888899


Q ss_pred             HHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076          435 DLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV  512 (662)
Q Consensus       435 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  512 (662)
                      .+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            9999999999999998876 4445 5778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 006076          513 KRVKRLLEA  521 (662)
Q Consensus       513 ~~~~~~m~~  521 (662)
                      .+.+++..+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887644

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.27  E-value=2.6e-08  Score=108.80  Aligned_cols=422  Identities=8%  Similarity=-0.008  Sum_probs=283.5

Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC---ccHHHHHHHHH
Q 006076           99 ALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGR---GEEVLELYRRM  172 (662)
Q Consensus        99 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m  172 (662)
                      -...++..+... +.|...|..++..+.+.+.++.+..+|+.+..   .....|...+..-.+.|.   ++.+.++|++.
T Consensus        51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa  129 (679)
T 4e6h_A           51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC  129 (679)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence            334445555554 46889999999999999999999999998764   355678888888888888   99999999999


Q ss_pred             hhCCCCCCCChhhHHHHHHHHHhCCCC----ccchHHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------cC
Q 006076          173 NGTGTGIRSDRFTYTYVLKACVASSCG----FSLLKHGKEIHASVLRH-GY-NGI-VHIMTTLIDMYAR---------FG  236 (662)
Q Consensus       173 ~~~~~g~~p~~~t~~~ll~~~~~~~~~----~~~~~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g  236 (662)
                      +... ...|+...+..-+.-..+.++.    .+..+..+++|+.++.. |. .++ ..+|...+.....         .+
T Consensus       130 l~~~-~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~  208 (679)
T 4e6h_A          130 LSKE-LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ  208 (679)
T ss_dssp             TCSS-SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred             HHhc-CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence            8761 1137777666666544443331    11134456788776653 66 554 5788888876542         34


Q ss_pred             CHHHHHHHHHcCCC-C--CH-hHHH---HHHHHHH----------HcCChhHHHHHHHHHhhhhCCCc------------
Q 006076          237 CVMYAGFVFSQMAV-K--NV-VSWS---AMIACYA----------RNGMAFEALELFREMIMESHDLC------------  287 (662)
Q Consensus       237 ~~~~A~~~f~~~~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~~~~~~------------  287 (662)
                      +++.+.++|++... |  +. ..|.   .+...+.          ....++.|...+.++.....++.            
T Consensus       209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~  288 (679)
T 4e6h_A          209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE  288 (679)
T ss_dssp             HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence            57889999998764 2  11 2332   2222110          01123344555544321111211            


Q ss_pred             ---C-----CH---HHHHHHHHHHHccC-------CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHH
Q 006076          288 ---P-----NS---VTMVSVLQACAALA-------ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ-CVF  348 (662)
Q Consensus       288 ---p-----~~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~  348 (662)
                         |     +.   ..|...+.---..+       ..+....+|++++... +.+..+|-..+..+...|+.++|. ++|
T Consensus       289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il  367 (679)
T 4e6h_A          289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL  367 (679)
T ss_dssp             TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence               1     00   12222222211111       1234566788887763 447788888888888999999996 999


Q ss_pred             hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HhHHHHHHHHHhcC
Q 006076          349 DHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---------SPS------------PISFVSVLGACSHA  404 (662)
Q Consensus       349 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~  404 (662)
                      ++...   .+...|-..+...-+.|++++|.++|+++.....         .|+            ...|...+....+.
T Consensus       368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~  447 (679)
T 4e6h_A          368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI  447 (679)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence            87653   3556788888889999999999999999886410         142            23577777777788


Q ss_pred             CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006076          405 GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN-KLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERA  481 (662)
Q Consensus       405 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~  481 (662)
                      |..+.|+.+|....+..+ .+....|...+.+-.+.| +.+.|..+|+..  ..+.+...|...+.-....|+.+.|..+
T Consensus       448 ~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l  526 (679)
T 4e6h_A          448 QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL  526 (679)
T ss_dssp             HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999986411 123445554444444554 599999999977  2334677888888888889999999999


Q ss_pred             HHHHHhcCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          482 SKRLFELEPT---NAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       482 ~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      |++++...|+   ....+...++.-.+.|..+.+.++.+++.+.-.
T Consensus       527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999998773   345677777778899999999999999987543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.26  E-value=1.6e-10  Score=119.13  Aligned_cols=221  Identities=7%  Similarity=-0.071  Sum_probs=124.2

Q ss_pred             HHccCCHHHHHHHHHHHHHhC--CCC---chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----ChhHHHHHHH
Q 006076          300 CAALAALEQGKMIHGYILRRG--LDS---ILPVVSALVTMYARCGKLELGQCVFDHMDK-----R-----DVVSWNSLIS  364 (662)
Q Consensus       300 ~~~~~~~~~a~~~~~~~~~~g--~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~-----~~~~~~~li~  364 (662)
                      +...|++++|...+..+.+.-  .+.   ...++..+...|...|++++|...+++..+     +     ...+++.+..
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  192 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT  192 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            344555555555555554320  111   123455555666666666665555554331     1     1235666666


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHHhcCCCHHHHHHHHHHhHHh---cCC-CCChHHHHHHHH
Q 006076          365 SYGVHGYGGKAIQIFKEMIYHGV-SPSP----ISFVSVLGACSHAGLVEEGKMLFESMRKE---HMI-RPSVEHYACMVD  435 (662)
Q Consensus       365 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~~li~  435 (662)
                      .|...|++++|++.|++..+... .++.    .++..+...+...|++++|.+.++...+.   .+- +....++..+..
T Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  272 (383)
T 3ulq_A          193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ  272 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            67777777777777766654210 0111    35666666777777777777777766531   011 223456667777


Q ss_pred             HHhhcCCHHHHHHHHHhc-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076          436 LLGRANKLEEAAKIIEDL-RI-----EPG-PKVWGSLLGSCRIHCN---VELAERASKRLFELEPTNAGNYVLLADVYAA  505 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  505 (662)
                      .|.+.|++++|...+++. .+     .|. ...+..+...+...|+   .++|...+++. ...|.....+..|+.+|.+
T Consensus       273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~  351 (383)
T 3ulq_A          273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE  351 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence            777777777777777654 10     111 1224455556666666   55555555554 2223334566678888888


Q ss_pred             cCChHHHHHHHHHHHh
Q 006076          506 ADMWDEVKRVKRLLEA  521 (662)
Q Consensus       506 ~g~~~~A~~~~~~m~~  521 (662)
                      .|++++|...+++..+
T Consensus       352 ~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          352 RKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            8888888888777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.25  E-value=3.6e-10  Score=102.66  Aligned_cols=160  Identities=13%  Similarity=0.010  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG  438 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  438 (662)
                      |..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+..  +.+...+..+...|.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence            3334444444444444444444443321 1233344444445555555555555555554321  234455555666666


Q ss_pred             hcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006076          439 RANKLEEAAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVK  516 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  516 (662)
                      ..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            666666666666554 1 12355666667777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHh
Q 006076          517 RLLEA  521 (662)
Q Consensus       517 ~~m~~  521 (662)
                      ++..+
T Consensus       168 ~~~~~  172 (186)
T 3as5_A          168 KKANE  172 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.24  E-value=7.5e-10  Score=110.39  Aligned_cols=212  Identities=9%  Similarity=0.040  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHh
Q 006076          307 EQGKMIHGYILRRGLDSILPVVSALVTMYA-------RCGKL-------ELGQCVFDHMDK---R-DVVSWNSLISSYGV  368 (662)
Q Consensus       307 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~  368 (662)
                      +.|..+|+.+++.. +.++..|..++..+.       +.|++       ++|..+|++..+   | +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            67778888888764 456778888887776       35886       899999997653   3 55689999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh-hcCCHHH
Q 006076          369 HGYGGKAIQIFKEMIYHGVSPSPI--SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG-RANKLEE  445 (662)
Q Consensus       369 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~  445 (662)
                      .|++++|.++|++..+  +.|+..  .|..+...+.+.|++++|..+|+...+..  +++...|...+.... ..|++++
T Consensus       112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999998  567543  78889999999999999999999997532  345556655544432 3699999


Q ss_pred             HHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          446 AAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFEL---EPT-NAGNYVLLADVYAAADMWDEVKRVKRLL  519 (662)
Q Consensus       446 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m  519 (662)
                      |..+|++. .. +.+...|..++..+...|+.++|..+++++++.   .|+ ....+..++..+.+.|++++|..+++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999987 22 236788999999999999999999999999985   453 5668888999999999999999999998


Q ss_pred             HhCC
Q 006076          520 EARG  523 (662)
Q Consensus       520 ~~~~  523 (662)
                      .+..
T Consensus       268 ~~~~  271 (308)
T 2ond_A          268 FTAF  271 (308)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.24  E-value=8.8e-10  Score=113.64  Aligned_cols=292  Identities=8%  Similarity=-0.006  Sum_probs=207.7

Q ss_pred             HhCCCCccchHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHH--hcCCHHHHH-----------HHHHcCCCC--CHh
Q 006076          194 VASSCGFSLLKHGKEIHASVLRHG--Y--NGIVHIMTTLIDMYA--RFGCVMYAG-----------FVFSQMAVK--NVV  254 (662)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~--~~g~~~~A~-----------~~f~~~~~~--~~~  254 (662)
                      .+.++    +++|.++.+.+.+.-  .  .++...|-.++..-.  -.+.++.+.           ..++.+...  +..
T Consensus        23 i~~~~----~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~   98 (383)
T 3ulq_A           23 IRRFS----IPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT   98 (383)
T ss_dssp             HHTTC----HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcC----HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCch
Confidence            34566    999999999986642  2  233444444443211  223333444           555554321  111


Q ss_pred             ------HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCC--cC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-
Q 006076          255 ------SWSAMIACYARNGMAFEALELFREMIMESHDL--CP-NSVTMVSVLQACAALAALEQGKMIHGYILRRGLD-S-  323 (662)
Q Consensus       255 ------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-  323 (662)
                            .|......+...|++++|+..|++........  .+ ...++..+...+...|+++.|...+..+.+.-.. + 
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence                  12235566788999999999999884211111  11 2356778888899999999999999998765211 1 


Q ss_pred             ----chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 006076          324 ----ILPVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYH----G  386 (662)
Q Consensus       324 ----~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g  386 (662)
                          ...+++.+...|...|++++|...|++..+     ++    ..+|+.+...|...|++++|++.|++..+.    +
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence                245788899999999999999999987652     22    247888999999999999999999998772    3


Q ss_pred             CCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC---CCCChHHHHHHHHHHhhcCC---HHHHHHHHHhcCCCCC-
Q 006076          387 VSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHM---IRPSVEHYACMVDLLGRANK---LEEAAKIIEDLRIEPG-  458 (662)
Q Consensus       387 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-  458 (662)
                      ..| ...++..+...+...|++++|...++...+...   -+.....+..+...|...|+   +++|+.++++.+..|+ 
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~  338 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL  338 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHH
Confidence            323 346788888999999999999999998764321   11123346778889999999   9999999999864443 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076          459 PKVWGSLLGSCRIHCNVELAERASKRLFELE  489 (662)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  489 (662)
                      ...+..+...|...|++++|...+++++++.
T Consensus       339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          339 EDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3467788899999999999999999998754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.22  E-value=4.4e-11  Score=119.06  Aligned_cols=242  Identities=11%  Similarity=0.070  Sum_probs=144.2

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC--------C---CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhh----
Q 006076          219 NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV--------K---NVVSWSAMIACYARNGMAFEALELFREMIMES----  283 (662)
Q Consensus       219 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----  283 (662)
                      +.+..++..+...|...|++++|..+|+++.+        .   ...+|..+...|...|++++|+..|++.....    
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            33567888999999999999999999988753        2   34578889999999999999999999984221    


Q ss_pred             -CCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC------CCC-chhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006076          284 -HDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRG------LDS-ILPVVSALVTMYARCGKLELGQCVFDHMDKRD  355 (662)
Q Consensus       284 -~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~  355 (662)
                       ........++..+...+...|++++|...+..+++..      ..| ...++..+...|.+.|++++|.          
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~----------  173 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE----------  173 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH----------
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH----------
Confidence             1112235567777778888888888888888776541      111 2233444444455555555444          


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc------C
Q 006076          356 VVSWNSLISSYGVHGYGGKAIQIFKEMIYH------GVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEH------M  422 (662)
Q Consensus       356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~  422 (662)
                                           ++|+++...      +-.|+ ..++..+...+...|++++|..+++.+.+..      .
T Consensus       174 ---------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  232 (311)
T 3nf1_A          174 ---------------------YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS  232 (311)
T ss_dssp             ---------------------HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ---------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence                                 444444332      11121 1234444555555555555555555554210      0


Q ss_pred             CCC-------ChHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          423 IRP-------SVEHYACMVDLLGRANKLEEAAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       423 ~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      ..+       ....+..+...+...+.+.+|...+.... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            011       12223333344455556666666666653 223 4567888899999999999999999999887764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.19  E-value=1.4e-08  Score=104.02  Aligned_cols=258  Identities=12%  Similarity=-0.028  Sum_probs=153.5

Q ss_pred             HHHHcCChhHHHHHHHHHhhhhCCCcCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-Cc----hhHHHHHH
Q 006076          262 CYARNGMAFEALELFREMIMESHDLCPNSV----TMVSVLQACAALAALEQGKMIHGYILRRGLD-SI----LPVVSALV  332 (662)
Q Consensus       262 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li  332 (662)
                      .+...|++++|...+++..  ...-..+..    ++..+...+...|++++|...+....+.... .+    ..+...+.
T Consensus        23 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3444555555555555542  211011111    2233334444555666665555555432100 11    12344566


Q ss_pred             HHHHhcCChHHHHHHHhhCCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHhHHHHH
Q 006076          333 TMYARCGKLELGQCVFDHMDK----------R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS--P--SPISFVSV  397 (662)
Q Consensus       333 ~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~l  397 (662)
                      ..|...|++++|...+++..+          | ....+..+...|...|++++|...+++.......  |  ...++..+
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  180 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  180 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence            666777777777766665431          1 1234556677777888888888888877663221  1  12456666


Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhcC-CCCC-----HHHHHHHH
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA-----CMVDLLGRANKLEEAAKIIEDLR-IEPG-----PKVWGSLL  466 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll  466 (662)
                      ...+...|++++|...++.......-......+.     ..+..+...|++++|...+++.. ..|.     ...+..+.
T Consensus       181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la  260 (373)
T 1hz4_A          181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  260 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence            6777788888888888887754321111111111     23345778899999998888772 1221     23566777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          467 GSCRIHCNVELAERASKRLFELEPT------NAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       467 ~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ..+...|+.++|...++++.+..+.      ....+..++.+|...|+.++|...++....
T Consensus       261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            8888889999999999888764322      123667788899999999999998887654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.19  E-value=1.9e-09  Score=97.89  Aligned_cols=167  Identities=11%  Similarity=-0.014  Sum_probs=143.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC  401 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  401 (662)
                      ...+..+...|...|++++|...|+++.+   .+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            34566778889999999999999998874   467789999999999999999999999998852 34567888888899


Q ss_pred             hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 006076          402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAE  479 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~  479 (662)
                      ...|++++|.++++.+.+..  +.+...+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|+.++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999997653  457888999999999999999999999987 22 346788999999999999999999


Q ss_pred             HHHHHHHhcCCCCcc
Q 006076          480 RASKRLFELEPTNAG  494 (662)
Q Consensus       480 ~~~~~~~~~~p~~~~  494 (662)
                      ..++++++..|++..
T Consensus       165 ~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          165 PHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHHCCCG
T ss_pred             HHHHHHHHcCCCchh
Confidence            999999998887654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.18  E-value=1.2e-09  Score=112.39  Aligned_cols=222  Identities=9%  Similarity=-0.033  Sum_probs=143.0

Q ss_pred             HHHccCCHHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----ChhHHHHHH
Q 006076          299 ACAALAALEQGKMIHGYILRRGL-DS----ILPVVSALVTMYARCGKLELGQCVFDHMDK-----R-----DVVSWNSLI  363 (662)
Q Consensus       299 a~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~-----~~~~~~~li  363 (662)
                      .+...|++++|...+..+.+... .+    ...++..+...|...|+++.|...+++..+     +     ...+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34566777777777777664311 11    234666677777777877777766665431     1     134677778


Q ss_pred             HHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHH
Q 006076          364 SSYGVHGYGGKAIQIFKEMIYH----GVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEH---MIRPSVEHYACMVD  435 (662)
Q Consensus       364 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~  435 (662)
                      ..|...|++++|++.|++..+.    +-.+ ...++..+...+...|++++|.+.++...+..   +-+....++..+..
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            8888888888888888776652    1111 12456677777888888888888888776411   12233667778888


Q ss_pred             HHhhcCCHHHHHHHHHhc----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076          436 LLGRANKLEEAAKIIEDL----RI--EPG-PKVWGSLLGSCRIHCN---VELAERASKRLFELEPTNAGNYVLLADVYAA  505 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  505 (662)
                      .|.+.|++++|...+++.    +.  .|. ...+..+...+...++   .++|...+++. ...|.....+..++..|..
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~  348 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES  348 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence            888888888888888765    11  122 2334455555666666   66666666552 1223334566778889999


Q ss_pred             cCChHHHHHHHHHHHh
Q 006076          506 ADMWDEVKRVKRLLEA  521 (662)
Q Consensus       506 ~g~~~~A~~~~~~m~~  521 (662)
                      .|++++|.+.+++..+
T Consensus       349 ~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          349 SCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.18  E-value=1.8e-09  Score=102.24  Aligned_cols=204  Identities=10%  Similarity=0.006  Sum_probs=150.0

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHH
Q 006076          288 PNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNSLIS  364 (662)
Q Consensus       288 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~  364 (662)
                      .|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+  | +...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            355677777888888999999999999998887546767777788889999999999998887652  3 4567888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCC-H-------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 006076          365 SYGVHGYGGKAIQIFKEMIYHGVSPS-P-------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS---VEHYACM  433 (662)
Q Consensus       365 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l  433 (662)
                      .|...|++++|++.|++..+.  .|+ .       ..|..+...+...|++++|.+.|+...+   +.|+   ...+..+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l  159 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence            999999999999999988874  444 3       3466677778888999999999988864   3454   5677777


Q ss_pred             HHHHhhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          434 VDLLGRANKLEEAAKIIEDLR--IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      ...|...|+.     +++++.  ...+...|....  ....+.+++|...++++++++|+++.+...+..+.
T Consensus       160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            7777665543     223221  122344444333  23446689999999999999999887777666554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.13  E-value=2e-09  Score=101.96  Aligned_cols=188  Identities=10%  Similarity=-0.082  Sum_probs=112.1

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCC---C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMD---K-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVL  398 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll  398 (662)
                      |+..+..+...|.+.|++++|...|++..   . ++...|..+..+|...|++++|++.|++..+  ..|+. ..+..+.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence            44566666666777777777777766553   2 4555565566667777777777777777666  34433 4556666


Q ss_pred             HHHhcCCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHH
Q 006076          399 GACSHAGLVEEGKMLFESMRKEHMIRPSV-------EHYACMVDLLGRANKLEEAAKIIEDL-RIEPG---PKVWGSLLG  467 (662)
Q Consensus       399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~  467 (662)
                      .++...|++++|...++...+..  +.+.       ..|..+...+.+.|++++|.+.|++. ...|+   ...|..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            66667777777777777666432  2233       34566666666666777777666665 34454   344555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      .+..     .+...++++..+.+.++..|..+  .....|.+++|...+++..+.
T Consensus       162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            5432     33444555555555544444332  233445568999999888763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.09  E-value=2.7e-09  Score=113.11  Aligned_cols=207  Identities=10%  Similarity=0.025  Sum_probs=150.4

Q ss_pred             hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 006076          269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAAL-EQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCV  347 (662)
Q Consensus       269 ~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  347 (662)
                      .++++..+.+.  ... .+.+...+..+..++...|++ ++|...++.+++.. +.+...+..+...|.+.|++++|.+.
T Consensus        84 ~~~al~~l~~~--~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           84 MEKTLQQMEEV--LGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHH--HTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHH--hcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            45566666655  221 123556666677777777888 88888888777764 33467778888888888888888888


Q ss_pred             HhhCC--CCChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcC--------CCH
Q 006076          348 FDHMD--KRDVVSWNSLISSYGVH---------GYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHA--------GLV  407 (662)
Q Consensus       348 ~~~m~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~--------g~~  407 (662)
                      |++..  .|+...|..+...|...         |++++|++.|++..+.  .| +...+..+..++...        |++
T Consensus       160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            88765  36667778888888888         8888888888888874  34 456777777777777        888


Q ss_pred             HHHHHHHHHhHHhcCCC---CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006076          408 EEGKMLFESMRKEHMIR---PSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERAS  482 (662)
Q Consensus       408 ~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  482 (662)
                      ++|...|+...+..  +   .+...|..+...|.+.|++++|.+.|++. ...| +...|..+...+...|+.++|...+
T Consensus       238 ~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888887532  2   36778888888888888888888888876 3334 5567777778888878777777654


Q ss_pred             H
Q 006076          483 K  483 (662)
Q Consensus       483 ~  483 (662)
                      .
T Consensus       316 ~  316 (474)
T 4abn_A          316 G  316 (474)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.08  E-value=1e-07  Score=97.77  Aligned_cols=290  Identities=11%  Similarity=0.039  Sum_probs=203.5

Q ss_pred             HhCCCCccchHHHHHHHHHHHHhC--CC--CchhHHHHHHHHHH--hcCCHHHHH---------HHHHcCC---CC--CH
Q 006076          194 VASSCGFSLLKHGKEIHASVLRHG--YN--GIVHIMTTLIDMYA--RFGCVMYAG---------FVFSQMA---VK--NV  253 (662)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~g--~~--~~~~~~~~li~~y~--~~g~~~~A~---------~~f~~~~---~~--~~  253 (662)
                      ....+    +++|.++.+.+.+..  .+  ++...|-.|+..-.  -.+.+..+.         ..++.+.   .+  +.
T Consensus        23 i~~~~----~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~   98 (378)
T 3q15_A           23 IRQFS----VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL   98 (378)
T ss_dssp             HHTTC----HHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH
T ss_pred             HHHcC----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH
Confidence            45566    999999999887642  22  33444455544311  112222222         4444432   22  11


Q ss_pred             h---HHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--C--
Q 006076          254 V---SWSAMIACYARNGMAFEALELFREMIMESHDLCPN----SVTMVSVLQACAALAALEQGKMIHGYILRRGL--D--  322 (662)
Q Consensus       254 ~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~--  322 (662)
                      .   .|......+...|++++|+..|++....... .++    ..++..+...+...|+++.|...+..+.+...  .  
T Consensus        99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  177 (378)
T 3q15_A           99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY  177 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence            1   2333445678899999999999988421111 133    35677788888999999999999998876421  1  


Q ss_pred             --CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC
Q 006076          323 --SILPVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYH----GV  387 (662)
Q Consensus       323 --~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~  387 (662)
                        ....+++.+...|...|++++|.+.|++..+     ++    ..+++.+...|...|++++|++.|++....    +.
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence              1245778899999999999999999887652     22    347888999999999999999999998761    22


Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCC---HHHHHHHHHhcCCCCC-HH
Q 006076          388 SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMI---RPSVEHYACMVDLLGRANK---LEEAAKIIEDLRIEPG-PK  460 (662)
Q Consensus       388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~  460 (662)
                      +....++..+...+.+.|++++|..+++...+...-   +.....+..+...|...|+   +++|+..+++.+..|+ ..
T Consensus       258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~  337 (378)
T 3q15_A          258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA  337 (378)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHH
Confidence            223567888889999999999999999998764321   1224456777788888888   9999999998754443 34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                      .+..+...|...|+.++|...++++++.
T Consensus       338 ~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          338 CARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5667888999999999999999988764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.03  E-value=4.1e-09  Score=102.89  Aligned_cols=221  Identities=11%  Similarity=0.094  Sum_probs=155.2

Q ss_pred             HccCCHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----------C-ChhHHHHH
Q 006076          301 AALAALEQGKMIHGYILRR-------GLDSILPVVSALVTMYARCGKLELGQCVFDHMDK----------R-DVVSWNSL  362 (662)
Q Consensus       301 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~l  362 (662)
                      ...|++++|...++.+++.       ..+....++..+...|...|++++|...|++..+          | ...+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3567778888887777653       2223467888899999999999999999887641          1 34578889


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc-----C-CCCChHH
Q 006076          363 ISSYGVHGYGGKAIQIFKEMIYH------GVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEH-----M-IRPSVEH  429 (662)
Q Consensus       363 i~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~  429 (662)
                      ...|...|++++|++.|++....      .-.| ...++..+...+...|++++|..+++...+..     + -+.....
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998764      1123 24677888889999999999999999887541     0 1224567


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhcC----------CCC-CHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhcCCCC
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDLR----------IEP-GPKVWGSLLGSCRIHCNVELA------ERASKRLFELEPTN  492 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~p-~~~~~~~ll~~~~~~g~~~~a------~~~~~~~~~~~p~~  492 (662)
                      +..+...|.+.|++++|...+++.-          ..+ ....|..+.......+....+      ...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            8889999999999999999988761          122 223344444444333332222      22222222233455


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          493 AGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +.++..++.+|...|++++|.+.+++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66888999999999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.01  E-value=2.6e-09  Score=118.15  Aligned_cols=162  Identities=14%  Similarity=0.175  Sum_probs=130.3

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLG  399 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~  399 (662)
                      +...++.|...|.+.|++++|.+.|++..+   .+..+|+.+...|.+.|++++|++.|++..+  +.|+ ...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            356777788888888888888888887652   3567888888888889999999999988887  4554 567888888


Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  477 (662)
                      ++...|++++|.+.|++..+..  +-+...|+.+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            8889999999999998887642  335778889999999999999999998876 4455 56788889999999999999


Q ss_pred             HHHHHHHHHhcC
Q 006076          478 AERASKRLFELE  489 (662)
Q Consensus       478 a~~~~~~~~~~~  489 (662)
                      |.+.+++++++.
T Consensus       164 A~~~~~kal~l~  175 (723)
T 4gyw_A          164 YDERMKKLVSIV  175 (723)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999988887654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.01  E-value=2e-07  Score=95.30  Aligned_cols=224  Identities=10%  Similarity=-0.031  Sum_probs=118.5

Q ss_pred             HHHHhcCCccHHHHHHHHHhhCCCCCCCChh----hHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCC-CCc----hhH
Q 006076          154 RALTLAGRGEEVLELYRRMNGTGTGIRSDRF----TYTYVLKACVASSCGFSLLKHGKEIHASVLRHGY-NGI----VHI  224 (662)
Q Consensus       154 ~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~----t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~  224 (662)
                      ..+...|++++|...+++....  .-..+..    ++..+-..+...++    ++.|.+.+...++..- .++    ..+
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGE----LTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3455677777777777776654  2111111    23333344445566    7777766666554321 111    223


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCC----------C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC--CHH
Q 006076          225 MTTLIDMYARFGCVMYAGFVFSQMAV----------K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP--NSV  291 (662)
Q Consensus       225 ~~~li~~y~~~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--~~~  291 (662)
                      .+.+...|...|++++|...|++...          + ....+..+...+...|++++|...+.+.........|  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            45566677777777777777765421          1 1234555666777777777777777766321111111  123


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCChHHHHHHHhhCCCCC-------hhH
Q 006076          292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSIL-PVVS-----ALVTMYARCGKLELGQCVFDHMDKRD-------VVS  358 (662)
Q Consensus       292 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~  358 (662)
                      ++..+...+...|++++|...++...+..-.++. ..+.     ..+..+...|++++|...+++...++       ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            4555555666677777777777666544211111 1111     22333556666666666666655321       113


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMI  383 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~  383 (662)
                      +..+...+...|++++|...+++..
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~  280 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELN  280 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555666666666555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.96  E-value=4.3e-08  Score=94.86  Aligned_cols=182  Identities=12%  Similarity=-0.037  Sum_probs=113.4

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HhHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPS-PISFV  395 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~  395 (662)
                      +...+-.+...+.+.|++++|...|+++.+  |+    ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            344555566666667777777777766653  22    34566666666677777777777776666321 111 23344


Q ss_pred             HHHHHHhc--------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006076          396 SVLGACSH--------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLG  467 (662)
Q Consensus       396 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~  467 (662)
                      .+..++..        .|++++|...|+.+.+.+  +.+......+.......+.+               ...+..+..
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~  156 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR  156 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence            45555555        666666666666665432  11222221111111000000               112456778


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 006076          468 SCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAA----------DMWDEVKRVKRLLEAR  522 (662)
Q Consensus       468 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~  522 (662)
                      .+...|++++|...++++++..|+++   ..+..++.+|...          |++++|...++++.+.
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            89999999999999999999999854   4788899999877          9999999999998864

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.95  E-value=8.4e-09  Score=101.81  Aligned_cols=201  Identities=12%  Similarity=0.007  Sum_probs=145.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C--ChhHHHHHHHHHHhcCChHHH
Q 006076          305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-------R--DVVSWNSLISSYGVHGYGGKA  375 (662)
Q Consensus       305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~A  375 (662)
                      ++++|...+..+               ...|...|++++|...|.+..+       +  ...+|+.+...|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777665               4467788999998888876542       1  145889999999999999999


Q ss_pred             HHHHHHHHHcCCC-CC----HhHHHHHHHHHhcC-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHH
Q 006076          376 IQIFKEMIYHGVS-PS----PISFVSVLGACSHA-GLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEE  445 (662)
Q Consensus       376 ~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~  445 (662)
                      +..|++....... .+    ..++..+..++... |++++|...|++..+...-..+    ..++..+...|.+.|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9999888763111 11    35788888899996 9999999999998753210111    4578899999999999999


Q ss_pred             HHHHHHhc-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCCh
Q 006076          446 AAKIIEDL-RIEPG---P-----KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN-----YVLLADVYA--AADMW  509 (662)
Q Consensus       446 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~  509 (662)
                      |+..|++. ...|+   .     ..|..+..++...|++++|...+++.++++|+....     +..++..|.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            99999987 22232   1     157778888999999999999999999999975543     344566664  45778


Q ss_pred             HHHHHHHHHHH
Q 006076          510 DEVKRVKRLLE  520 (662)
Q Consensus       510 ~~A~~~~~~m~  520 (662)
                      ++|.+.++.+.
T Consensus       257 ~~A~~~~~~~~  267 (292)
T 1qqe_A          257 SEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTSS
T ss_pred             HHHHHHhccCC
Confidence            88888875443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.91  E-value=3.9e-08  Score=83.58  Aligned_cols=129  Identities=16%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL  437 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  437 (662)
                      .|..+...|...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++.+.+..                
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------   65 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------   65 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence            34555555555566666666665555432 1233344444444444555555555555443321                


Q ss_pred             hhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 006076          438 GRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       438 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                                        +.+...|..+...+...|++++|...++++.+..|.++..+..++.+|.+.|++++|...++
T Consensus        66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  127 (136)
T 2fo7_A           66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ  127 (136)
T ss_dssp             ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence                              22344455555555556666666666666666666555566666666666666666666666


Q ss_pred             HHHh
Q 006076          518 LLEA  521 (662)
Q Consensus       518 ~m~~  521 (662)
                      ++..
T Consensus       128 ~~~~  131 (136)
T 2fo7_A          128 KALE  131 (136)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            5544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.90  E-value=3e-09  Score=93.39  Aligned_cols=141  Identities=9%  Similarity=-0.042  Sum_probs=105.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006076          364 SSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK  442 (662)
Q Consensus       364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  442 (662)
                      ..+...|++++|++.+.....  ..|+ ...+..+...|.+.|++++|.+.|+...+..  +.+...|..+...|.+.|+
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence            344556777777777777654  2333 3455567777888888888888888877542  3367788888888888888


Q ss_pred             HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          443 LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAER-ASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       443 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      +++|...|++. .+.| +...|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            88888888876 3445 57788888889999998876655 4689999999999999998888888775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.90  E-value=2.1e-07  Score=90.28  Aligned_cols=162  Identities=12%  Similarity=0.019  Sum_probs=82.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-----ChH
Q 006076          355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-----SVE  428 (662)
Q Consensus       355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~  428 (662)
                      +..++..+..+|...|++++|++++.+....|..+ +...+..++..+.+.|+++.|.+.++.|.+.   .|     +..
T Consensus        99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~  175 (310)
T 3mv2_B           99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNE  175 (310)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchH
Confidence            33344455555555666666666665554433211 2234445555556666666666666665432   34     233


Q ss_pred             HHHHHHHH--HhhcC--CHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCc
Q 006076          429 HYACMVDL--LGRAN--KLEEAAKIIEDL-RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL----------EPTNA  493 (662)
Q Consensus       429 ~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~  493 (662)
                      +...|..+  ....|  +.++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.          +|+++
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~  255 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP  255 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence            33333333  22222  566666666665 22343222233333555666666666666655544          35555


Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          494 GNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .++..++.++...|+  +|.++++++.+
T Consensus       256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          256 TFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             HHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            566555555555555  56666666654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.90  E-value=6.8e-08  Score=82.05  Aligned_cols=124  Identities=15%  Similarity=0.170  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 006076          327 VVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH  403 (662)
Q Consensus       327 ~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  403 (662)
                      .+..+...|...|++++|..+|+++.   ..+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            56788999999999999999999875   3467789999999999999999999999998863 3356677788888888


Q ss_pred             CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      .|++++|.++++.+.+..  +.+...+..+...|.+.|++++|...++++
T Consensus        82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            999999999998887542  334566666667777777777776666654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.90  E-value=2.7e-08  Score=98.11  Aligned_cols=167  Identities=11%  Similarity=-0.020  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----
Q 006076          326 PVVSALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVH-GYGGKAIQIFKEMIYHGVSP-S----  390 (662)
Q Consensus       326 ~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----  390 (662)
                      .+++.+..+|.+.|++++|...|++..+     .+    ..+|+.+...|... |++++|+..|++..+..... +    
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~  157 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence            3455555555555555555555544331     11    24677777778775 88888888888776621100 1    


Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCCHH----
Q 006076          391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV-----EHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPK----  460 (662)
Q Consensus       391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----  460 (662)
                      ..++..+...+...|++++|...|+...+...-.+..     ..|..+...+...|++++|...+++. .+.|+..    
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  237 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            2456777778888888888888888876532111111     15667777888888888888888876 3444321    


Q ss_pred             --HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 006076          461 --VWGSLLGSCR--IHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       461 --~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                        .+..++.++.  ..+++++|...++++..++|..
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence              2344555554  3456777777777777777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.89  E-value=2.8e-08  Score=96.17  Aligned_cols=201  Identities=12%  Similarity=0.031  Sum_probs=144.1

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhCCC--C---C-hhHHH
Q 006076          289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS--ILPVVSALVTMYARCGKLELGQCVFDHMDK--R---D-VVSWN  360 (662)
Q Consensus       289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~-~~~~~  360 (662)
                      +...+......+...|++++|...++.+++.....  ....+..+..+|.+.|++++|...|+...+  |   . ..+|.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            45666777778889999999999999998874221  166788899999999999999999998763  3   2 34677


Q ss_pred             HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 006076          361 SLISSYGV--------HGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYA  431 (662)
Q Consensus       361 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  431 (662)
                      .+..+|..        .|++++|+..|++..+.  .|+.. ...              +...+......     -...+.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~--------------a~~~~~~~~~~-----~~~~~~  152 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDD--------------ATQKIRELRAK-----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHH--------------HHHHHHHHHHH-----HHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHH--------------HHHHHHHHHHH-----HHHHHH
Confidence            78888888        99999999999999984  45432 221              11111111111     122356


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc--
Q 006076          432 CMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIH----------CNVELAERASKRLFELEPTNAG--  494 (662)
Q Consensus       432 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~--  494 (662)
                      .+...|.+.|++++|...|+++ ...|+    ...+..+..++...          |++++|...++++++..|+++.  
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            6788888999999999998876 22333    34667777777765          8899999999999999998754  


Q ss_pred             -hHHHHHHHHHhcCChH
Q 006076          495 -NYVLLADVYAAADMWD  510 (662)
Q Consensus       495 -~~~~l~~~~~~~g~~~  510 (662)
                       ++..+..++.+.|+++
T Consensus       233 ~a~~~l~~~~~~~~~~~  249 (261)
T 3qky_A          233 TAEELYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence             3344555554444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.88  E-value=3.4e-08  Score=96.23  Aligned_cols=199  Identities=9%  Similarity=0.046  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---------
Q 006076          290 SVTMVSVLQACAALAALEQGKMIHGYILRR------GL-DSILPVVSALVTMYARCGKLELGQCVFDHMDK---------  353 (662)
Q Consensus       290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---------  353 (662)
                      ..++..+...+...|++++|...+..+++.      +- +....++..+...|...|++++|...|++..+         
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            345555556666666666666666666543      21 22355778888899999999999988887642         


Q ss_pred             -C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhc---
Q 006076          354 -R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH------GVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEH---  421 (662)
Q Consensus       354 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---  421 (662)
                       | ...+|..+...|...|++++|+..|++..+.      +-.|+ ..++..+...+...|++++|..+++...+..   
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence             2 2457888999999999999999999999874      11333 3578888899999999999999999987531   


Q ss_pred             ---CCCC-ChHHHHHHHHHHhhc------CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          422 ---MIRP-SVEHYACMVDLLGRA------NKLEEAAKIIEDLR-IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       422 ---~~~~-~~~~~~~li~~~~~~------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                         ...+ ....+..+...+...      ..+.++...++... ..| ...++..+...+...|++++|...++++++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               1112 222333333333332      23455555555553 223 3457888999999999999999999998875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.85  E-value=2.6e-07  Score=87.09  Aligned_cols=181  Identities=12%  Similarity=-0.001  Sum_probs=113.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----HH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMDK--RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPI----SF  394 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~  394 (662)
                      ...+..+...+.+.|++++|...|+++.+  |+    ...+..+..+|.+.|++++|+..|+++.+.  .|+..    .+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence            33455566667777888888888877652  32    235667777788888888888888887774  34321    23


Q ss_pred             HHHHHHHhc------------------CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 006076          395 VSVLGACSH------------------AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIE  456 (662)
Q Consensus       395 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  456 (662)
                      ..+..++..                  .|+.++|...|+.+.+.+  +-+...+.++..+    +.+....         
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~~~~~~---------  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VFLKDRL---------  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HHHHHHH---------
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HHHHHHH---------
Confidence            333333332                  344555555555554322  1111111111100    0000000         


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA---GNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                        ......+...+...|++++|...++++++..|+++   .++..++.+|.+.|++++|.+.++.+...+.
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence              00112455678889999999999999999999875   5688999999999999999999999887654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.84  E-value=4.8e-07  Score=87.80  Aligned_cols=239  Identities=10%  Similarity=-0.036  Sum_probs=160.4

Q ss_pred             HhcCCHHHHHHHHHcCCCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHH
Q 006076          233 ARFGCVMYAGFVFSQMAVKN-VVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKM  311 (662)
Q Consensus       233 ~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~  311 (662)
                      .-.|++..+..-...+...+ ...-.-+.++|...|++...      +     .-.|....+..+. .|...+    +..
T Consensus        24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~------~-----~~~~~~~a~~~la-~~~~~~----a~~   87 (310)
T 3mv2_B           24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ------D-----PTSKLGKVLDLYV-QFLDTK----NIE   87 (310)
T ss_dssp             HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC------C-----SSSTTHHHHHHHH-HHHTTT----CCH
T ss_pred             HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC------C-----CCCHHHHHHHHHH-HHhccc----HHH
Confidence            34577777777555554322 22233345777777776531      1     1123332322222 222222    556


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006076          312 IHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-----RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG  386 (662)
Q Consensus       312 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  386 (662)
                      .++..++.+ .++......+...|...|++++|.+++.+...     .+...+..++..|.+.|+.+.|.+.+++|.+  
T Consensus        88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--  164 (310)
T 3mv2_B           88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--  164 (310)
T ss_dssp             HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence            666665554 34555556788889999999999999988743     2456788888999999999999999999988  


Q ss_pred             CCC-----CHhHHHHHHHHH--hc--CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-
Q 006076          387 VSP-----SPISFVSVLGAC--SH--AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-  455 (662)
Q Consensus       387 ~~p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-  455 (662)
                      ..|     +..+...+..++  ..  .+++.+|..+|+++...   .|+......+..++.+.|++++|.+.++.+ .. 
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            467     366666676663  32  34899999999999754   355344444555899999999999998765 21 


Q ss_pred             ---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 006076          456 ---------EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN  495 (662)
Q Consensus       456 ---------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  495 (662)
                               .| |+.+...++......|+  +|.++++++.+..|+++..
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence                     14 56666566666666776  8899999999999998643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.82  E-value=1.5e-08  Score=112.39  Aligned_cols=168  Identities=8%  Similarity=-0.123  Sum_probs=98.8

Q ss_pred             HhcCChHHHHHHHhhCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhc
Q 006076          336 ARCGKLELGQCVFDHMD-----------KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSH  403 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~  403 (662)
                      ...|++++|.+.|++..           ..+...|..+...|.+.|++++|++.|++..+.  .| +...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            44566666666555543           223445666666666666666666666666653  23 33455555666666


Q ss_pred             CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006076          404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERA  481 (662)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~  481 (662)
                      .|++++|.+.|++..+..  +.+...+..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus       480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666665432  2245566666666666666666 6666654 2233 455666666666666666666666


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          482 SKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      ++++++++|++..++..++.+|...|+
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            666666666666666666666655444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.79  E-value=1.4e-07  Score=92.75  Aligned_cols=172  Identities=9%  Similarity=-0.055  Sum_probs=132.6

Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC
Q 006076          344 GQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHM  422 (662)
Q Consensus       344 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  422 (662)
                      ..+.+......+...+..+...+.+.|++++|+..|++..+.  .| +...+..+...+...|++++|...++.+.+.  
T Consensus       105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--  180 (287)
T 3qou_A          105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--  180 (287)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence            334444444444556677778888899999999999998884  45 4467777888889999999999999888643  


Q ss_pred             CCCChHHHHHH-HHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHH
Q 006076          423 IRPSVEHYACM-VDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN--AGNYV  497 (662)
Q Consensus       423 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~  497 (662)
                       .|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|+.++|...++++++.+|++  ...+.
T Consensus       181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~  259 (287)
T 3qou_A          181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX  259 (287)
T ss_dssp             -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred             -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence             4554433333 33366777888888888776 2334 67889999999999999999999999999999987  77899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHH
Q 006076          498 LLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      .|+.+|...|+.++|...+++..
T Consensus       260 ~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          260 TFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHH
Confidence            99999999999999998887643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.76  E-value=8.2e-07  Score=82.76  Aligned_cols=162  Identities=12%  Similarity=-0.046  Sum_probs=123.6

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC----CHHHHHHHHHHhHHhcCCCCChHH
Q 006076          354 RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG----LVEEGKMLFESMRKEHMIRPSVEH  429 (662)
Q Consensus       354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~  429 (662)
                      .++.++..+...|...+++++|++.|++..+.|   +...+..+...+.. +    ++++|.++|+...+    .-++..
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence            456667777777777788888888888877755   45566666666666 5    78888888888764    235677


Q ss_pred             HHHHHHHHhh----cCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076          430 YACMVDLLGR----ANKLEEAAKIIEDL-RIEPG---PKVWGSLLGSCRI----HCNVELAERASKRLFELEPTNAGNYV  497 (662)
Q Consensus       430 ~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~  497 (662)
                      +..|..+|..    .+++++|.++|++. ...|+   +..+..|...|..    .++.++|...+++..+. |.++.++.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence            7788888876    78889999988887 33343   6778888888887    78899999999999888 55677888


Q ss_pred             HHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 006076          498 LLADVYAAA-D-----MWDEVKRVKRLLEARGL  524 (662)
Q Consensus       498 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~  524 (662)
                      .|+.+|... |     ++++|.+.+++..+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999998764 3     89999999998887653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.73  E-value=4.1e-07  Score=100.85  Aligned_cols=190  Identities=11%  Similarity=0.021  Sum_probs=149.2

Q ss_pred             HccCCHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 006076          301 AALAALEQGKMIHGYIL--------RRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVH  369 (662)
Q Consensus       301 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~  369 (662)
                      ...|++++|.+.++.++        +. .+.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            67889999999999888        32 244567888899999999999999999998763   4677999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006076          370 GYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK  448 (662)
Q Consensus       370 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  448 (662)
                      |++++|++.|++..+.  .| +...+..+..++.+.|++++ .+.|+...+..  +.+...|..+..+|.+.|++++|.+
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999984  45 45778888889999999999 99999998643  3467889999999999999999999


Q ss_pred             HHHhc-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcchH
Q 006076          449 IIEDL-RIEPG-PKVWGSLLGSCRIHCN-----VELAERASKRLFELEPTNAGNY  496 (662)
Q Consensus       449 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~  496 (662)
                      .|++. ...|+ ...|..+..++...++     .+...++.+.+.++.+.++..+
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~  610 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL  610 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence            99998 46675 5677777777766554     3444555555555655544443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.72  E-value=1.1e-05  Score=85.34  Aligned_cols=342  Identities=11%  Similarity=0.014  Sum_probs=174.8

Q ss_pred             CChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCC-ccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHhCCCCccchH
Q 006076          129 DSVDDARHVFDKTRR--RTIYVWNALFRALTLAGR-GEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVASSCGFSLLK  204 (662)
Q Consensus       129 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~  204 (662)
                      |..+.+..+|++-..  |++..|...+.-..+.+. .+....+|+..+..- |..| +...+...+.-+.......+.++
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v-g~d~~s~~iW~~Yi~f~~~~~~~~~~~~  106 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF-ENYWDSYGLYKEYIEEEGKIEDEQTRIE  106 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS-TTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence            556666666654332  455566666555544442 344556666655431 3222 23333333333221111123377


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCCHHHHHHHHHcCCC----CCHhHHHHHHHHHHHcC
Q 006076          205 HGKEIHASVLRHGYNGIVHIMTTLIDMYAR-------------FGCVMYAGFVFSQMAV----KNVVSWSAMIACYARNG  267 (662)
Q Consensus       205 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g  267 (662)
                      .++.+++.+++.....-...|......-..             .+.+..|..+++.+..    .+...|...+.--..++
T Consensus       107 ~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~  186 (493)
T 2uy1_A          107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG  186 (493)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence            788888888864222112233322221111             1122333433333221    13445655554432221


Q ss_pred             C-------hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006076          268 M-------AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGK  340 (662)
Q Consensus       268 ~-------~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  340 (662)
                      .       .+.+..+|++.+  .. .+.+...|...+.-+...|+.+.|+.+++.+++.  +.+...+.    .|+...+
T Consensus       187 ~~~~~~~~~~Rv~~~ye~al--~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e  257 (493)
T 2uy1_A          187 MKLGGRPHESRMHFIHNYIL--DS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD  257 (493)
T ss_dssp             TCCCHHHHHHHHHHHHHHHH--HH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred             ccCcchhhHHHHHHHHHHHH--Hc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence            1       234566787773  22 2334556666666677788899999999998888  33433333    2333222


Q ss_pred             hHHH-HHHHhhCC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-CCC
Q 006076          341 LELG-QCVFDHMD------------KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH-AGL  406 (662)
Q Consensus       341 ~~~A-~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~  406 (662)
                      .++. ..+.+...            ......|...+..+.+.+..+.|..+|.+. .. ..++...|......-.. .++
T Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d  335 (493)
T 2uy1_A          258 EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGS  335 (493)
T ss_dssp             CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCC
Confidence            2211 11221110            011234666666666667777888888777 21 11233333321111111 235


Q ss_pred             HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076          407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLF  486 (662)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  486 (662)
                      ++.|+.+|+...+.+  +.++..+...++...+.|+.+.|..+|+++.  .....|...+.--..+|+.+.+..++++..
T Consensus       336 ~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          336 RATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            777888888777653  2234556666777777778888888887763  246667777766666777777777666665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.70  E-value=5.6e-07  Score=89.33  Aligned_cols=220  Identities=12%  Similarity=0.036  Sum_probs=153.3

Q ss_pred             cCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 006076          266 NGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQ  345 (662)
Q Consensus       266 ~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~  345 (662)
                      .|++++|.+++++......+   .   +      +...++++.|...+..+               ...|...|++++|.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~---~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT---S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC---C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc---c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            56778888888877311111   1   0      11146677776666554               45677888888888


Q ss_pred             HHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHHhcCCCHHHHH
Q 006076          346 CVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SPS--PISFVSVLGACSHAGLVEEGK  411 (662)
Q Consensus       346 ~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~  411 (662)
                      ..|.+..+     .+    ..+|+.+...|...|++++|+..|++....-.   .|.  ..++..+...+.. |++++|.
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            88776542     11    34788888999999999999999988765311   121  3567778888888 9999999


Q ss_pred             HHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHhcCCHHHHH
Q 006076          412 MLFESMRKEHMIRP----SVEHYACMVDLLGRANKLEEAAKIIEDL-RI---EPG----PKVWGSLLGSCRIHCNVELAE  479 (662)
Q Consensus       412 ~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~  479 (662)
                      ..|+...+...-..    ...++..+...|.+.|++++|+..|++. .+   .++    ...+..+...+...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99998875321001    1467888999999999999999999876 11   122    235667777788889999999


Q ss_pred             HHHHHHHhcCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 006076          480 RASKRLFELEPTNAGN-----YVLLADVYAAADMWDEVKRV  515 (662)
Q Consensus       480 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~  515 (662)
                      ..+++.+ +.|.....     ...++..| ..|+.+.+..+
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999999 98875432     33455555 56777666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.70  E-value=1.8e-07  Score=101.73  Aligned_cols=159  Identities=13%  Similarity=0.065  Sum_probs=125.5

Q ss_pred             cCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHH
Q 006076          338 CGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKML  413 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~  413 (662)
                      .|++++|.+.|++..+   .+...|..+...|.+.|++++|++.|++..+.  .| +...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4789999999998764   35778999999999999999999999999884  45 467888889999999999999999


Q ss_pred             HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 006076          414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH---CNVELAERASKRLFEL  488 (662)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~  488 (662)
                      ++...+..  +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+...   |+.++|...++++++.
T Consensus        80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998653  446789999999999999999999999987 3334 678889999999999   9999999999999999


Q ss_pred             CCCCcchHHHHH
Q 006076          489 EPTNAGNYVLLA  500 (662)
Q Consensus       489 ~p~~~~~~~~l~  500 (662)
                      +|++...|..+.
T Consensus       158 ~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 GVGAVEPFAFLS  169 (568)
T ss_dssp             TCCCSCHHHHTT
T ss_pred             CCcccChHHHhC
Confidence            999888887776

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.69  E-value=8.8e-08  Score=83.65  Aligned_cols=100  Identities=12%  Similarity=-0.011  Sum_probs=88.5

Q ss_pred             CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          423 IRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       423 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                      +.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..|..+
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            344 4567888888999999999999999987 3344 688899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC
Q 006076          500 ADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       500 ~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +.+|.+.|++++|...+++..+.
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999998864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.69  E-value=3.7e-07  Score=99.23  Aligned_cols=147  Identities=10%  Similarity=-0.035  Sum_probs=103.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 006076          303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIF  379 (662)
Q Consensus       303 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~  379 (662)
                      .|++++|...++.+++.. +.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|...|++++|++.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            467888888888887653 33577888888889999999999999887653   35678888888999999999999999


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc---CCHHHHHHHHHhc
Q 006076          380 KEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA---NKLEEAAKIIEDL  453 (662)
Q Consensus       380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m  453 (662)
                      ++..+.. +.+...+..+..++...|++++|.+.++...+..  +.+...+..+...+...   |+.++|.+.+++.
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            9888852 2345678888888899999999999999887642  34577888888888888   8999999888876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.67  E-value=5.4e-07  Score=83.73  Aligned_cols=128  Identities=12%  Similarity=0.064  Sum_probs=98.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 006076          360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG  438 (662)
Q Consensus       360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  438 (662)
                      +.+...|.+.|++++|+..|++..+.  .| +...+..+..++...|++++|...|+...+..  +.+...+..+...|.
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            34888899999999999999999884  45 45778888889999999999999999998643  346788888888887


Q ss_pred             hcCC--HHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          439 RANK--LEEAAKIIEDLRIEPGP--KVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       439 ~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      ..|.  .+++...++... .|+.  ..|..+..++...|++++|...+++++++.|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            6654  445566666653 4443  344555666777899999999999999999973

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.66  E-value=2.7e-07  Score=83.14  Aligned_cols=75  Identities=12%  Similarity=-0.026  Sum_probs=57.1

Q ss_pred             HHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          446 AAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN--AGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       446 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      |...+++. ...| +...|..+...+...|++++|...++++++.+|+.  +..+..++.+|...|+.++|...+++..
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            44455444 2234 56778888888888888888888888888888764  4578888888888999988888887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.65  E-value=2.7e-08  Score=87.21  Aligned_cols=120  Identities=17%  Similarity=0.083  Sum_probs=100.2

Q ss_pred             HHHhcCCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCH
Q 006076          399 GACSHAGLVEEGKMLFESMRKEHMIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNV  475 (662)
Q Consensus       399 ~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~  475 (662)
                      ..+...|++++|+..++....   ..| +...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            345566889999999888753   234 3445677899999999999999999987 4445 678999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 006076          476 ELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRV-KRLLEA  521 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~  521 (662)
                      ++|...++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887765 466654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.64  E-value=4.2e-07  Score=81.89  Aligned_cols=156  Identities=8%  Similarity=-0.040  Sum_probs=109.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-Hhc
Q 006076          328 VSALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGA-CSH  403 (662)
Q Consensus       328 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~  403 (662)
                      ...+...+.+.|++++|...|++..+   .+...|..+...|.+.|++++|+..|++....  .|+.......... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence            44456667788888888888888774   35667888888888888888888888877653  3433322221111 112


Q ss_pred             CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 006076          404 AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG---PKVWGSLLGSCRIHCNVELAE  479 (662)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~  479 (662)
                      .+...+|...++...+..  +.+...+..+...|...|++++|...|+++ ...|+   ...|..+...+...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            222334677787776542  335788888889999999999999998876 44553   567888888899999999999


Q ss_pred             HHHHHHHh
Q 006076          480 RASKRLFE  487 (662)
Q Consensus       480 ~~~~~~~~  487 (662)
                      ..+++.+.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.63  E-value=1.5e-07  Score=82.12  Aligned_cols=97  Identities=10%  Similarity=0.002  Sum_probs=85.5

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4567778888899999999999999877 2334 7788999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 006076          504 AAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       504 ~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...|++++|.+.+++..+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999987753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.63  E-value=8e-07  Score=83.70  Aligned_cols=185  Identities=11%  Similarity=-0.002  Sum_probs=132.6

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCh----hHHH
Q 006076          289 NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS--ILPVVSALVTMYARCGKLELGQCVFDHMDK--RDV----VSWN  360 (662)
Q Consensus       289 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~----~~~~  360 (662)
                      +...+......+...|++++|...++.+++.....  ....+..+..+|.+.|++++|...|++..+  |+.    .+|.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34455566677889999999999999999874322  235778889999999999999999998763  432    2455


Q ss_pred             HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHhHHhc
Q 006076          361 SLISSYGV------------------HGYGGKAIQIFKEMIYHGVSPSPI-SFVSVLGACSHAGLVEEGKMLFESMRKEH  421 (662)
Q Consensus       361 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  421 (662)
                      .+..+|..                  .|+.++|+..|+++.+.  .|+.. .....              .....+... 
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~-  145 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR-  145 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence            55555554                  57899999999999884  56543 22111              111111100 


Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076          422 MIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG  494 (662)
Q Consensus       422 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  494 (662)
                          .......+...|.+.|++++|...|+++ ...|+    ...+..+..++...|+.++|...++++....|++..
T Consensus       146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                0112245678889999999999999987 23343    246888899999999999999999999998888654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.62  E-value=5.1e-07  Score=76.23  Aligned_cols=109  Identities=11%  Similarity=0.018  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSC  469 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~  469 (662)
                      ..+......+.+.|++++|.+.|+...+..  +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            345555666666677777777776665432  335666666777777777777777776665 2233 456677777777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADV  502 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  502 (662)
                      ...|++++|...++++++++|++..++..|.++
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            777777777777777777777776666655543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.58  E-value=1.4e-05  Score=78.18  Aligned_cols=149  Identities=16%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-----
Q 006076          370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE--EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK-----  442 (662)
Q Consensus       370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----  442 (662)
                      +++++++++++++.+.. +-|...|..-.-.+.+.|.++  +++++++.+.+..  +-|...|+.-...+.+.|+     
T Consensus       124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhh
Confidence            44555555555555431 123344444444444444444  5555555555432  2244444444444444444     


Q ss_pred             -HHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 006076          443 -LEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNV-ELAERASKRLFELE---PTNAGNYVLLADVYAAADMWDEVKRV  515 (662)
Q Consensus       443 -~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~  515 (662)
                       ++++++.++++ ... -|...|+-+...+...|+. +....+.+++.+++   |.++.++..++++|.+.|+.++|.++
T Consensus       201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence             55566655544 222 2555666665555555553 22444555555544   55556666666666666666666666


Q ss_pred             HHHHHh
Q 006076          516 KRLLEA  521 (662)
Q Consensus       516 ~~~m~~  521 (662)
                      ++.+.+
T Consensus       281 ~~~l~~  286 (306)
T 3dra_A          281 YDLLKS  286 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.57  E-value=6.5e-07  Score=83.14  Aligned_cols=156  Identities=10%  Similarity=0.058  Sum_probs=113.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHH----------------HHHHHhcCCCHHHHHHHHHHhHHhcCCC
Q 006076          362 LISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVS----------------VLGACSHAGLVEEGKMLFESMRKEHMIR  424 (662)
Q Consensus       362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~  424 (662)
                      ....+...|++++|+..|++..+.  .|+. ..+..                +..++...|++++|...|+...+..  +
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p   85 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--P   85 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C
Confidence            344556667777777777776663  4433 33444                7788999999999999999998653  4


Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076          425 PSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCN--VELAERASKRLFELEPTNAGNYVLLA  500 (662)
Q Consensus       425 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~  500 (662)
                      .+...+..+...|...|++++|...|++. ...| +...|..+...+...|+  .+.+...++++....|. ...+..++
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g  164 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG  164 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence            47889999999999999999999999987 3445 67788888888766553  34455566665543332 23455678


Q ss_pred             HHHHhcCChHHHHHHHHHHHhC
Q 006076          501 DVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       501 ~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ..+...|++++|...+++..+.
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            8888899999999999988753

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.57  E-value=1.7e-06  Score=80.38  Aligned_cols=125  Identities=11%  Similarity=-0.030  Sum_probs=97.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHh
Q 006076          394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRI  471 (662)
Q Consensus       394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~  471 (662)
                      +..+...+...|++++|...|+..     ++|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            334455566677777777777655     2456777777777788888888888777765 22 3366778888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          472 HCNVELAERASKRLFELEPTNA----------------GNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       472 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      .|++++|...++++++..|.+.                ..+..++.+|.+.|++++|.+.+++..+..
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            9999999999999998888766                789999999999999999999999988643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.55  E-value=1.7e-06  Score=72.08  Aligned_cols=114  Identities=13%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R-IEPGPKVWGSLLGSC  469 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~  469 (662)
                      .++..+...+...|++++|.+.++.+.+..  +.+...+..+...+.+.|++++|..+++++ . .+.+..+|..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            455556666666777777777777665432  335666777777777777777777777766 2 234667788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD  507 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  507 (662)
                      ...|++++|...++++++..|+++..+..++.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            88899999999999999888888888888887776544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.55  E-value=7.4e-06  Score=80.52  Aligned_cols=160  Identities=8%  Similarity=-0.035  Sum_probs=114.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh----HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 006076          362 LISSYGVHGYGGKAIQIFKEMIYHG-VSPSPI----SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYAC  432 (662)
Q Consensus       362 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~  432 (662)
                      .+..+...|++++|.+++++..... ..|+..    .+..+...+...|++++|...|+...+...-.++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4566777888888888888877632 122211    2234555666777888888888888753211222    336888


Q ss_pred             HHHHHhhcCCHHHHHHHHHhcC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 006076          433 MVDLLGRANKLEEAAKIIEDLR-----I---EPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN------AGNYV  497 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  497 (662)
                      +...|...|++++|...++++-     .   .|. ..+|..+...|...|++++|...+++++++.+..      +.+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            8888888888888888887651     1   111 2467888899999999999999999998764322      56888


Q ss_pred             HHHHHHHhcCC-hHHHHHHHHHHHh
Q 006076          498 LLADVYAAADM-WDEVKRVKRLLEA  521 (662)
Q Consensus       498 ~l~~~~~~~g~-~~~A~~~~~~m~~  521 (662)
                      .++.+|.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999995 6999998887653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.55  E-value=3.1e-06  Score=78.58  Aligned_cols=145  Identities=7%  Similarity=-0.099  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH
Q 006076          328 VSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV  407 (662)
Q Consensus       328 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  407 (662)
                      +..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            34455556666666666666666655556666666666666666666666666655532 22334455555555555555


Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006076          408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP-GPKVWGSLLGSCRIHCNVELAERASKRLF  486 (662)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  486 (662)
                      ++|.+.|+...+..   |+....     .+...|           +...| ....|..+..++...|++++|...+++++
T Consensus        88 ~~A~~~~~~al~~~---~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           88 DLAIKDLKEALIQL---RGNQLI-----DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             HHHHHHHHHHHHTT---TTCSEE-----ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC---CCccHH-----HHHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            55555555554321   110000     000000           01222 23677888888899999999999999999


Q ss_pred             hcCCCC
Q 006076          487 ELEPTN  492 (662)
Q Consensus       487 ~~~p~~  492 (662)
                      ++.|++
T Consensus       149 ~~~p~~  154 (213)
T 1hh8_A          149 SMKSEP  154 (213)
T ss_dssp             TTCCSG
T ss_pred             HcCccc
Confidence            998875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.54  E-value=1.8e-06  Score=76.35  Aligned_cols=127  Identities=8%  Similarity=-0.045  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCR  470 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~  470 (662)
                      .+..+...+...|++++|...|+...+..  +.+...+..+...+...|++++|...+++. .. +.+...|..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44555556666777777777777766432  335667777777788888888888877765 22 335677888888899


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHH--HHHHHHhcCChHHHHHHHHHHHh
Q 006076          471 IHCNVELAERASKRLFELEPTNAGNYVL--LADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ..|++++|...++++++..|.+...+..  ++..+.+.|++++|.+.+.....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999999999988777744  44447888999999999887643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.54  E-value=3.8e-06  Score=82.30  Aligned_cols=161  Identities=7%  Similarity=-0.037  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHH-HHHHH
Q 006076          290 SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--RDVVSWNS-LISSY  366 (662)
Q Consensus       290 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~  366 (662)
                      ...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|+++..  |+...+.. ....+
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            3344455555666777777777777776654 23456677777777777888888887777763  44332222 22235


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076          367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA  446 (662)
Q Consensus       367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  446 (662)
                      .+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.++|
T Consensus       196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            55666667777777766642 22345666666677777777777777777765421111245666666666666666666


Q ss_pred             HHHHHh
Q 006076          447 AKIIED  452 (662)
Q Consensus       447 ~~~~~~  452 (662)
                      ...+++
T Consensus       275 ~~~~r~  280 (287)
T 3qou_A          275 ASXYRR  280 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.53  E-value=1.1e-06  Score=75.91  Aligned_cols=96  Identities=14%  Similarity=-0.021  Sum_probs=83.4

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            4556667778888999999999999876 2334 7788888999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHh
Q 006076          504 AAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       504 ~~~g~~~~A~~~~~~m~~  521 (662)
                      ...|++++|.+.+++..+
T Consensus        97 ~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            999999999999998775

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.51  E-value=1.1e-06  Score=74.11  Aligned_cols=100  Identities=11%  Similarity=0.114  Sum_probs=89.7

Q ss_pred             CCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          423 IRPS-VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       423 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                      +.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4453 456788899999999999999999987 3344 788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC
Q 006076          500 ADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       500 ~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +.+|...|++++|.+.+++..+.
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.51  E-value=5.7e-06  Score=76.94  Aligned_cols=173  Identities=10%  Similarity=-0.101  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 006076          309 GKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK-RDVVSWNSLISSYGVHG----YGGKAIQIFKEMI  383 (662)
Q Consensus       309 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~  383 (662)
                      |.+.+....+.|   ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. +    +.++|++.|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            445555555543   566677777777777788888877776653 456677777777776 5    7888888888887


Q ss_pred             HcCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 006076          384 YHGVSPSPISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPS---VEHYACMVDLLGR----ANKLEEAAKIIED  452 (662)
Q Consensus       384 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~  452 (662)
                      +.|   +...+..|...+..    .+++++|.++|+...+.   .|+   +..+..|..+|..    .+++++|...|++
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            755   55667777777776    78889999988888642   332   6788888888887    7789999999888


Q ss_pred             c-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 006076          453 L-RIEPGPKVWGSLLGSCRIH-C-----NVELAERASKRLFELEPT  491 (662)
Q Consensus       453 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p~  491 (662)
                      . ...++...+..|...|... |     +.++|...+++..+.++.
T Consensus       155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            7 3235666777777777653 3     889999999998887643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.50  E-value=3.4e-06  Score=83.01  Aligned_cols=163  Identities=6%  Similarity=-0.049  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcC--CCCC--hH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-----ISFVSVLGACSHAGLVEEGKMLFESMRKEHM--IRPS--VE  428 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~--~~  428 (662)
                      .+...+..+...|++++|++.+.+..+.....+.     ..+..+...+...|++++|...++...+...  ..+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4455667778888888888888877764322111     1233445566778899999998888764221  1111  45


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDLR----IEPG-----PKVWGSLLGSCRIHCNVELAERASKRLFELEPT------NA  493 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~  493 (662)
                      +++.+...|...|++++|...+++.-    ..|+     ..+|..+...|...|++++|...+++++++.++      -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            78888999999999999998887651    1222     257888999999999999999999998875422      14


Q ss_pred             chHHHHHHHHHhcCChHHH-HHHHHHHH
Q 006076          494 GNYVLLADVYAAADMWDEV-KRVKRLLE  520 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~  520 (662)
                      .+|..++.+|.+.|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            5788999999999999999 77677654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.49  E-value=2.1e-06  Score=72.24  Aligned_cols=116  Identities=11%  Similarity=-0.021  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSC  469 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~  469 (662)
                      ..+..+...+...|++++|...++...+..  +.+...+..+...+...|++++|.+.+++. ... .+...|..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            445555666666777777777777665432  335666777777777777888877777765 223 3567788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW  509 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  509 (662)
                      ...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            8899999999999999999998888888888888887765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.47  E-value=1.9e-06  Score=72.83  Aligned_cols=115  Identities=10%  Similarity=0.012  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSC  469 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~  469 (662)
                      ..+..+...+...|++++|...|+...+..  +.+...+..+...|...|++++|...+++. .. +.+...|..+...+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            445555555666666666666666654321  234556666666677777777777766655 22 23567777888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      ...|++++|...++++++..|.+...+..++.++.+.|+
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888888876653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.46  E-value=4.5e-07  Score=88.71  Aligned_cols=190  Identities=10%  Similarity=-0.025  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 006076          325 LPVVSALVTMYARCGKLELGQCVFDHMD--KR-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGA  400 (662)
Q Consensus       325 ~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a  400 (662)
                      ...+..+...|.+.|++++|...|++..  .| +...|..+...|...|++++|+..+++..+.  .| +...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            3445555666666666666666666554  23 5566667777777777777777777776653  34 34566666667


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSV-EHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE  479 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~  479 (662)
                      +...|++++|...|+...+.   .|+. ..+...+....+......... .......++......+ ..+ ..|+.++|.
T Consensus        82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~  155 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL  155 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence            77777777777777766542   1211 011111111111111111111 2222333444444333 222 268889999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 006076          480 RASKRLFELEPTNAGNYVLLADVYAAA-DMWDEVKRVKRLLEAR  522 (662)
Q Consensus       480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~  522 (662)
                      ..++++++++|++......+...+.+. +++++|.++|.+..+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999998777777777777776 7899999999887653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.45  E-value=4e-05  Score=75.16  Aligned_cols=158  Identities=12%  Similarity=-0.049  Sum_probs=119.9

Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 006076          331 LVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PS----PISFVS  396 (662)
Q Consensus       331 li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~  396 (662)
                      .+..+...|++++|..++++..+     ++    ...+..+...|...|++++|+..|++....... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            46778889999999999988653     22    113344666777788999999999999884322 22    226888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhc----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhc-------CCCCC-HHHHH
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEH----MIRP-SVEHYACMVDLLGRANKLEEAAKIIEDL-------RIEPG-PKVWG  463 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~  463 (662)
                      +..++...|++++|..+|+.+.+..    +..+ ...++..+...|.+.|++++|...+++.       ...+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999999987421    1122 2347889999999999999999998866       11222 57888


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 006076          464 SLLGSCRIHCN-VELAERASKRLFEL  488 (662)
Q Consensus       464 ~ll~~~~~~g~-~~~a~~~~~~~~~~  488 (662)
                      .+..++...|+ .++|...+++++.+
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            89999999994 69999999988753

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.45  E-value=1.2e-06  Score=86.97  Aligned_cols=196  Identities=7%  Similarity=-0.047  Sum_probs=149.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006076          302 ALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR-CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFK  380 (662)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~  380 (662)
                      ..|++++|.++++...+.... .          +.+ .+++++|...|.+           ....|...|++++|...|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~   60 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL   60 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence            357788999999888765321 1          112 5788888888765           3567889999999999999


Q ss_pred             HHHHcCC---CC-C-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 006076          381 EMIYHGV---SP-S-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMI--RP--SVEHYACMVDLLGRANKLEEAAKIIE  451 (662)
Q Consensus       381 ~m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~  451 (662)
                      +......   .+ . ..+|..+...|...|++++|...|+...+...-  .+  ...++..+...|.+ |++++|+..|+
T Consensus        61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~  139 (307)
T 2ifu_A           61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ  139 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence            8766311   11 1 357888889999999999999999987653210  11  24678889999998 99999999998


Q ss_pred             hc-CCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChHHHHHHHH
Q 006076          452 DL-RIE---PG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA------GNYVLLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       452 ~m-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~  517 (662)
                      +. .+.   .+    ..++..+...+...|++++|...+++++++.|.+.      ..+..++.++...|++++|...++
T Consensus       140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~  219 (307)
T 2ifu_A          140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR  219 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            76 111   11    45788889999999999999999999998765443      256678888899999999999999


Q ss_pred             HHH
Q 006076          518 LLE  520 (662)
Q Consensus       518 ~m~  520 (662)
                      +..
T Consensus       220 ~al  222 (307)
T 2ifu_A          220 ESY  222 (307)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            877

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.43  E-value=0.00018  Score=70.44  Aligned_cols=226  Identities=7%  Similarity=-0.046  Sum_probs=161.5

Q ss_pred             CChhHHHHHHHHHhhhhCCCcCCHH-HHHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc-
Q 006076          267 GMAFEALELFREMIMESHDLCPNSV-TMVSVLQACAALA--ALEQGKMIHGYILRRGLDSILPVVSALVTMY----ARC-  338 (662)
Q Consensus       267 g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~-  338 (662)
                      ...++|++++..++  .  +.|+.. .++.--.++...+  +++++..+++.++....+ +..+++.--..+    .+. 
T Consensus        47 e~s~~aL~~t~~~L--~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           47 EYSERALHITELGI--N--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             CCSHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHH--H--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence            33457777777662  2  235433 3444445555666  777777777777776533 334444333333    444 


Q ss_pred             --CChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC-----
Q 006076          339 --GKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGG--KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL-----  406 (662)
Q Consensus       339 --g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-----  406 (662)
                        ++++++..+++.+.   .+|..+|+.-.-.+.+.|.++  ++++.++++.+.. .-|...|+.-.....+.+.     
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence              78889998888876   367788888888888888888  9999999999864 2355677666666677776     


Q ss_pred             -HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH-HHHHHHhc-CC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 006076          407 -VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEE-AAKIIEDL-RI----EPGPKVWGSLLGSCRIHCNVELAE  479 (662)
Q Consensus       407 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~  479 (662)
                       ++++++.++.+....  +-|...|+.+...+.+.|+..+ +.++..+. ..    ..+...+..+...+.+.|+.++|.
T Consensus       201 ~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~  278 (306)
T 3dra_A          201 TIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR  278 (306)
T ss_dssp             HHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence             889999999888653  5578899999999999888544 55566665 21    347788999999999999999999


Q ss_pred             HHHHHHHh-cCCCCcchHHHHH
Q 006076          480 RASKRLFE-LEPTNAGNYVLLA  500 (662)
Q Consensus       480 ~~~~~~~~-~~p~~~~~~~~l~  500 (662)
                      ++++.+.+ .+|.....+...+
T Consensus       279 ~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          279 TVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHHhccChHHHHHHHHHH
Confidence            99999996 7998766555443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.41  E-value=1.7e-06  Score=86.89  Aligned_cols=160  Identities=13%  Similarity=0.025  Sum_probs=114.7

Q ss_pred             CChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 006076          339 GKLELGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE  415 (662)
Q Consensus       339 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  415 (662)
                      +++++|...|+...+  | +...|..+...|.+.|++++|+..|++....  .|+...+           ..+.+.++- 
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-  192 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-  192 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-
Confidence            344445444443332  2 4457777777888888888888888877774  3332110           001111100 


Q ss_pred             HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       416 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                              +.....|..+...|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|++.
T Consensus       193 --------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          193 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence                    012467888888999999999999998877 3334 678899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhcCChHHH-HHHHHHHH
Q 006076          494 GNYVLLADVYAAADMWDEV-KRVKRLLE  520 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~  520 (662)
                      .++..++.++.+.|++++| ...++.|.
T Consensus       265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          265 AAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 44666554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.40  E-value=1.7e-06  Score=77.86  Aligned_cols=118  Identities=8%  Similarity=0.054  Sum_probs=75.7

Q ss_pred             cCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHH-HHhcCCH--HH
Q 006076          403 HAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGS-CRIHCNV--EL  477 (662)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~-~~~~g~~--~~  477 (662)
                      ..|++++|...++...+..  +.+...+..+...|...|++++|...|++. ... .+...|..+... +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            3455666666666655432  335566666666677777777777666655 222 245566666666 6667776  77


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          478 AERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      |...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            777777777777777777777777777777777777777776654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.37  E-value=3e-06  Score=71.28  Aligned_cols=95  Identities=11%  Similarity=0.057  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  504 (662)
                      ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345666777788888888888888776 2233 67788888888888899999999999999999988888888999999


Q ss_pred             hcCChHHHHHHHHHHHh
Q 006076          505 AADMWDEVKRVKRLLEA  521 (662)
Q Consensus       505 ~~g~~~~A~~~~~~m~~  521 (662)
                      ..|++++|...+++..+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            99999999988887765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.35  E-value=0.00034  Score=73.92  Aligned_cols=342  Identities=9%  Similarity=-0.038  Sum_probs=152.4

Q ss_pred             CCchHHHHHHh--cCCCCCHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHh-CCCC-ChhHHHHHHHHhhc----CCChHH
Q 006076           63 GNLRQALDVLS--IEPNPTQHTYELLLLSCTHHNS-LSDALNVHSHLTDN-GFDQ-DPFLVTKLINVYSH----FDSVDD  133 (662)
Q Consensus        63 g~~~~A~~~~~--~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~~~-~~~~~~~li~~y~~----~g~~~~  133 (662)
                      |+++.+..+|+  -...|+...|..-+.-..+.++ .+....+|+..+.. |..+ +..+|...+..+..    .++++.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            66777777777  2233676666666655554442 34455666666554 4322 45666666666542    345666


Q ss_pred             HHHHHhcCCC-C--Cc-chHHHHHHHHH-------------hcCCccHHHHHHHHHhhCCCCCCC-ChhhHHHHHHHHHh
Q 006076          134 ARHVFDKTRR-R--TI-YVWNALFRALT-------------LAGRGEEVLELYRRMNGTGTGIRS-DRFTYTYVLKACVA  195 (662)
Q Consensus       134 A~~~f~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~l~~~m~~~~~g~~p-~~~t~~~ll~~~~~  195 (662)
                      ++++|++... |  +. ..|......-.             ..+.+..|..+++.+...   .+. +...+...+.--..
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~---~~~~s~~~W~~y~~~E~~  184 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL---IRGWSVKNAARLIDLEME  184 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHhc
Confidence            7777765432 1  11 11221111000             001122233333333221   000 11122222221111


Q ss_pred             CCCCc---cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCC-C-CHhHHHHHHHHHHHcCChh
Q 006076          196 SSCGF---SLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAV-K-NVVSWSAMIACYARNGMAF  270 (662)
Q Consensus       196 ~~~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-~~~~~~~li~~~~~~g~~~  270 (662)
                      .+...   +..+.+..+++.++... +.+..+|...+..+.+.|+++.|..+|++... | +...|.    .|+.....+
T Consensus       185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~  259 (493)
T 2uy1_A          185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEE  259 (493)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCT
T ss_pred             CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchh
Confidence            10000   00233455666666543 44456666666666666777777776665421 2 111221    222221112


Q ss_pred             HHHHHHHHHhhhhC----CCcC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChH
Q 006076          271 EALELFREMIMESH----DLCP---NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG-KLE  342 (662)
Q Consensus       271 ~A~~~~~~m~~~~~----~~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~  342 (662)
                      +..+-+.+......    +..+   ....|...+....+.+.++.|+.+++.+ +.. ..+..+|.....+-..++ +.+
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~  337 (493)
T 2uy1_A          260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRA  337 (493)
T ss_dssp             HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred             HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChH
Confidence            22111111100000    0001   1233444444444556677777777666 211 123333333222222333 466


Q ss_pred             HHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHH
Q 006076          343 LGQCVFDHMDK--R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK  419 (662)
Q Consensus       343 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  419 (662)
                      .|.++|+...+  | +...|...+.-....|+.+.|..+|+++.     .....|...+.--...|+.+.+..+++...+
T Consensus       338 ~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          338 TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777765532  2 23345555555556667777777776651     1234455555544555777777766666653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.32  E-value=2.4e-05  Score=76.86  Aligned_cols=162  Identities=13%  Similarity=-0.035  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCC--C-C------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--Hh
Q 006076          327 VVSALVTMYARCGKLELGQCVFDHMDK--R-D------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SPS--PI  392 (662)
Q Consensus       327 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~  392 (662)
                      .+...+..|...|++++|.+.+....+  + .      ...+..+...|...|++++|+..|++......   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344456677888888888888765431  1 1      12344456667788899999999988876321   112  34


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC------CC-CH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-----VEHYACMVDLLGRANKLEEAAKIIEDL-RI------EP-GP  459 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~~  459 (662)
                      +++.+...|...|++++|..+|+...+.....|+     ..++..+...|.+.|++++|...+++. .+      .. -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7788888899999999999999888632111222     257888899999999999999998875 11      11 15


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 006076          460 KVWGSLLGSCRIHCNVELA-ERASKRLFEL  488 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~  488 (662)
                      .+|..+...+...|+.++| ...+++++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6788888899999999999 7778877653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.32  E-value=2.2e-06  Score=74.62  Aligned_cols=103  Identities=10%  Similarity=-0.049  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSC  469 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~  469 (662)
                      ..+..+...+...|++++|...|+...+..  +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            455566667778888888888888876542  346777788888888888888888888876 2333 567788888889


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNY  496 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~  496 (662)
                      ...|++++|...+++++++.|+++...
T Consensus       100 ~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            999999999999999999988876553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.32  E-value=6.6e-06  Score=71.62  Aligned_cols=104  Identities=9%  Similarity=-0.042  Sum_probs=86.2

Q ss_pred             CCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHH
Q 006076          387 VSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWG  463 (662)
Q Consensus       387 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~  463 (662)
                      +.|+. ..+..+...+.+.|++++|...|+...+..  +.+...|..+..+|.+.|++++|++.|++. .+.| ++..|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            34543 466677778889999999999999998643  346888999999999999999999999887 3344 577888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          464 SLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      .+..++...|++++|...+++++++.|++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999999999874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.31  E-value=2.8e-06  Score=81.28  Aligned_cols=135  Identities=10%  Similarity=-0.077  Sum_probs=91.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHH
Q 006076          360 NSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS--VEHYACMVDLL  437 (662)
Q Consensus       360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~  437 (662)
                      -.....+...|++++|.++|..+...  .|+....-.+...+.+.+++++|+..|+...+ .. .|.  ...+..+..++
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence            34556677778888888888777653  35444444444567778888888888875532 10 111  23567778888


Q ss_pred             hhcCCHHHHHHHHHhcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          438 GRANKLEEAAKIIEDLR---IEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       438 ~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                      .+.|++++|+..|++..   ..|.  ...+.....++...|+.++|...|+++...+|+ ..+...|
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            88888888888888772   2143  235666777788888888888888888888887 5555444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.31  E-value=4e-06  Score=68.29  Aligned_cols=98  Identities=14%  Similarity=0.015  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT--NAGNYVLLAD  501 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~  501 (662)
                      +...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|.  +...+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            3445666777777778888887777765 22 335677788888888888888888888888888888  8888888888


Q ss_pred             HHHhc-CChHHHHHHHHHHHhCC
Q 006076          502 VYAAA-DMWDEVKRVKRLLEARG  523 (662)
Q Consensus       502 ~~~~~-g~~~~A~~~~~~m~~~~  523 (662)
                      +|.+. |++++|.+.++.....+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcc
Confidence            88888 89999988888887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.31  E-value=8.8e-06  Score=73.05  Aligned_cols=127  Identities=9%  Similarity=0.094  Sum_probs=97.7

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCH--
Q 006076          367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL-LGRANKL--  443 (662)
Q Consensus       367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--  443 (662)
                      ...|++++|+..|++..... +.+...+..+...+...|++++|...|+...+..  +.+...+..+... |...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34677888888888887742 3355778888888889999999999999887643  3467778888888 7788998  


Q ss_pred             HHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076          444 EEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY  496 (662)
Q Consensus       444 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  496 (662)
                      ++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            9999998877 3334 577888888999999999999999999999999876544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.30  E-value=1.3e-05  Score=73.47  Aligned_cols=94  Identities=9%  Similarity=-0.054  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhc-C---CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----
Q 006076          428 EHYACMVDLLGRANKLEEAAKIIEDL-R---IEP-G----PKVWGSLLGSCRIHCNVELAERASKRLFELEP--TN----  492 (662)
Q Consensus       428 ~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----  492 (662)
                      ..+..+...|...|++++|.+.+++. .   ..+ +    ...+..+...+...|++++|...+++.++..+  .+    
T Consensus        67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  146 (203)
T 3gw4_A           67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI  146 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence            34455555555555555555555443 0   011 1    23455566666677777777777777665321  11    


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          493 AGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ..++..++.+|...|++++|.+.+++..+
T Consensus       147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            12356777888888888888887776553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.29  E-value=7.8e-06  Score=69.63  Aligned_cols=98  Identities=16%  Similarity=0.054  Sum_probs=81.6

Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076          425 PSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV  502 (662)
Q Consensus       425 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  502 (662)
                      .+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            45677788888888888888888888776 2233 577888888888899999999999999999999988899999999


Q ss_pred             HHhcCChHHHHHHHHHHHhC
Q 006076          503 YAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       503 ~~~~g~~~~A~~~~~~m~~~  522 (662)
                      |...|++++|...+++..+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999887653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.28  E-value=1.6e-05  Score=65.19  Aligned_cols=108  Identities=11%  Similarity=0.036  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR  470 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~  470 (662)
                      .+..+...+...|++++|...++...+..  +.+...+..+...+.+.|++++|...+++. ...| +...|..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34444455555566666666655554321  224555556666666666666666666554 2222 4556666666677


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076          471 IHCNVELAERASKRLFELEPTNAGNYVLLADV  502 (662)
Q Consensus       471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  502 (662)
                      ..|++++|...++++++.+|+++..+..+..+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            77777777777777777777666555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.28  E-value=3.5e-06  Score=70.43  Aligned_cols=94  Identities=19%  Similarity=0.034  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA  506 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  506 (662)
                      .+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3456677888899999999998877 3344 6788888889999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 006076          507 DMWDEVKRVKRLLEAR  522 (662)
Q Consensus       507 g~~~~A~~~~~~m~~~  522 (662)
                      |++++|...+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.27  E-value=1.3e-05  Score=73.46  Aligned_cols=152  Identities=13%  Similarity=-0.007  Sum_probs=97.5

Q ss_pred             hcCChHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhcCCCHH
Q 006076          337 RCGKLELGQC---VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH----GVSP-SPISFVSVLGACSHAGLVE  408 (662)
Q Consensus       337 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~  408 (662)
                      ..|++++|.+   ++..-+.....+|+.+...|...|++++|+..|++....    |..| ...++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4567777777   544433334556777777777777777777777776551    1122 2245666667777888888


Q ss_pred             HHHHHHHHhHHhcCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCH
Q 006076          409 EGKMLFESMRKEHMIRP-----SVEHYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNV  475 (662)
Q Consensus       409 ~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~  475 (662)
                      +|...++...+...-.+     ....+..+...+...|++++|...+++.    +..++    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            88888877654311112     2345777788888888888888887765    11122    23356777788888999


Q ss_pred             HHHHHHHHHHHhc
Q 006076          476 ELAERASKRLFEL  488 (662)
Q Consensus       476 ~~a~~~~~~~~~~  488 (662)
                      ++|...+++++++
T Consensus       164 ~~A~~~~~~al~~  176 (203)
T 3gw4_A          164 LEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888888764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.26  E-value=6.3e-06  Score=73.01  Aligned_cols=95  Identities=9%  Similarity=0.031  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  504 (662)
                      ...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344555555555555555555555554 2222 44555555566666666666666666666666666666666666666


Q ss_pred             hcCChHHHHHHHHHHHh
Q 006076          505 AADMWDEVKRVKRLLEA  521 (662)
Q Consensus       505 ~~g~~~~A~~~~~~m~~  521 (662)
                      ..|++++|.+.+++..+
T Consensus        91 ~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            66666666666665544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.25  E-value=1.1e-05  Score=66.97  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  504 (662)
                      ...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            567888999999999999999999987 22 3467889999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhC
Q 006076          505 AADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       505 ~~g~~~~A~~~~~~m~~~  522 (662)
                      ..|++++|...++++...
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999988764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.24  E-value=1.1e-05  Score=66.23  Aligned_cols=97  Identities=10%  Similarity=0.096  Sum_probs=87.2

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      ....+..+...+...|++++|...+++. ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3567788889999999999999999987 223 47788999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 006076          504 AAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       504 ~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...|++++|.+.+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            9999999999999988764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.23  E-value=1.1e-05  Score=68.14  Aligned_cols=99  Identities=14%  Similarity=0.075  Sum_probs=89.6

Q ss_pred             CCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 006076          424 RPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLAD  501 (662)
Q Consensus       424 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  501 (662)
                      +.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            345778899999999999999999999987 4444 77889999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhC
Q 006076          502 VYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       502 ~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +|.+.|++++|.+.+++..+.
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHh
Confidence            999999999999999988763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.22  E-value=5.9e-06  Score=69.66  Aligned_cols=95  Identities=4%  Similarity=-0.035  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHH
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG-------NYV  497 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~  497 (662)
                      ...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++..       +|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            345677888888999999999998876 3344 5778889999999999999999999999998876543       677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 006076          498 LLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .++.+|...|++++|.+.+++...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            788999999999999999988664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.22  E-value=1.5e-05  Score=76.24  Aligned_cols=181  Identities=9%  Similarity=-0.052  Sum_probs=133.5

Q ss_pred             hcCChHHHHHHHhhCCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---------------
Q 006076          337 RCGKLELGQCVFDHMDK--R-DVVSWNSL-------ISSYGVHGYGGKAIQIFKEMIYHGVSPSP---------------  391 (662)
Q Consensus       337 ~~g~~~~A~~~~~~m~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------  391 (662)
                      ..++.+.|.+.|.+..+  | ....|+.+       ...+...++..+++..+++-..  +.|+.               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            46788888888887763  3 34577777       4555555555566655555443  33322               


Q ss_pred             -------hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCH----H
Q 006076          392 -------ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGP----K  460 (662)
Q Consensus       392 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~  460 (662)
                             .....+...+...|++++|.+.|+.+..   ..|+......+...+.+.|++++|+..|+.....|+.    .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                   1223455677889999999999998863   2454436677778999999999999999977434433    3


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          461 VWGSLLGSCRIHCNVELAERASKRLFELE--PT-NAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      .+..+..++...|++++|+..+++.....  |. .+.....++.++.+.|+.++|...|+++...
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            67788899999999999999999998533  54 4457788999999999999999999999864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.22  E-value=3.1e-05  Score=68.22  Aligned_cols=128  Identities=10%  Similarity=-0.043  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      ..|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...++...+..  +.+...+..+...
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence            456667777777888888888887777642 2345667777777778888888888888776542  3456777788888


Q ss_pred             HhhcCCHHHHHHHHHhc-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 006076          437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGS--LLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                      |.+.|++++|...+++. ...| +...+..  +...+...|++++|...+++..+
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            88888888888888776 2223 4444433  33336667888888887776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.22  E-value=1.6e-05  Score=68.53  Aligned_cols=96  Identities=9%  Similarity=-0.025  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLA  500 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  500 (662)
                      +...+..+...+.+.|++++|.+.|++. ...|+    ...|..+...+...|++++|...++++++..|+++..+..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            3444555555555555555555555554 33444    345555555555666666666666666666665555555666


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 006076          501 DVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       501 ~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .+|...|++++|...+++..+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666655543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.21  E-value=1.2e-05  Score=69.22  Aligned_cols=105  Identities=10%  Similarity=-0.020  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR  470 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~  470 (662)
                      .+..+...+...|++++|...|+...+..  +.+...|..+...|.+.|++++|...|++. ...| ++..|..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            44455556677777777777777776542  336667777778888888888888888776 2233 5667778888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 006076          471 IHCNVELAERASKRLFELEPTNAGNYVLL  499 (662)
Q Consensus       471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  499 (662)
                      ..|++++|...+++++++.|+++......
T Consensus        98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence            88999999999999988888776655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.21  E-value=1.1e-05  Score=73.91  Aligned_cols=171  Identities=9%  Similarity=-0.030  Sum_probs=105.5

Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCH
Q 006076          331 LVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLV  407 (662)
Q Consensus       331 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  407 (662)
                      .+......|+++.|.+.|+.-.+   .....|..+...+...|++++|+..|++....  .|+...+...          
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~----------   77 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ----------   77 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH----------
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh----------
Confidence            33444455667777666654332   23456777778888888888888888888773  3332111000          


Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076          408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRL  485 (662)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  485 (662)
                           ....-..    ......+..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|...++++
T Consensus        78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                 0000000    011356777888888889999998888876 223 46778888999999999999999999999


Q ss_pred             HhcCCCCcchHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 006076          486 FELEPTNAGNYVLLADVYAAADMWDEVK-RVKRLLEAR  522 (662)
Q Consensus       486 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~  522 (662)
                      ++++|+++.++..+..++...|+.+++. ..++.|-.+
T Consensus       149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998888887776 455555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.18  E-value=2e-05  Score=66.13  Aligned_cols=109  Identities=8%  Similarity=-0.100  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCR  470 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~  470 (662)
                      .+..+...+.+.|++++|...|+...+..  +.+...|..+...|.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44455556666666777766666665432  335666777777777777777777777665 2233 4667777777888


Q ss_pred             hcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 006076          471 IHCNVELAERASKRLFELE------PTNAGNYVLLADVY  503 (662)
Q Consensus       471 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~  503 (662)
                      ..|++++|...++++++++      |.+......+..+.
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            8888888888888888877      66655555554443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.17  E-value=2.8e-05  Score=68.69  Aligned_cols=108  Identities=14%  Similarity=0.009  Sum_probs=83.3

Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHH
Q 006076          391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGS  468 (662)
Q Consensus       391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~  468 (662)
                      ...+..+...+...|++++|...|+...+..  +.+...|..+...|.+.|++++|+..|++. .+.| +...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3456666667777777888877777776542  336777888888888888888888888776 3334 57788899999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076          469 CRIHCNVELAERASKRLFELEPTNAGNYVLLA  500 (662)
Q Consensus       469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  500 (662)
                      +...|++++|...++++++++|++...+....
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            99999999999999999999999888665443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=3.9e-05  Score=65.99  Aligned_cols=109  Identities=9%  Similarity=-0.056  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 006076          392 ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS----VEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSL  465 (662)
Q Consensus       392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l  465 (662)
                      ..+..+...+...|++++|.+.|+...+   ..|+    ...+..+...|...|++++|...+++. ...| +...|..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            3444444455555555555555555542   2333    455666666666777777777666654 2223 56677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          466 LGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      ..++...|++++|...++++++++|++...+..+..+.
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            78888888888888888888888888776666655554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.15  E-value=1.5e-05  Score=66.80  Aligned_cols=98  Identities=9%  Similarity=0.026  Sum_probs=88.0

Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076          425 PSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADV  502 (662)
Q Consensus       425 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  502 (662)
                      .+...+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            35667888899999999999999999987 22 34678899999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhC
Q 006076          503 YAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       503 ~~~~g~~~~A~~~~~~m~~~  522 (662)
                      |...|++++|...+++..+.
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhc
Confidence            99999999999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.11  E-value=2.7e-05  Score=78.15  Aligned_cols=120  Identities=12%  Similarity=-0.031  Sum_probs=70.9

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----------------VVSWNSLISSYGVHGYGGKAIQIFKEMIYH  385 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  385 (662)
                      +...+..+...|.+.|++++|...|++..+  |+                ...|..+..+|.+.|++++|+..|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            466788899999999999999999997652  33                245666666666666666666666666553


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076          386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA  446 (662)
Q Consensus       386 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  446 (662)
                      . +.+...+..+..++...|++++|...|+...+..  +.+...+..+..++.+.|+.++|
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            1 1233445555555555555555555555554321  12334444444444444444444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.10  E-value=1.4e-05  Score=69.05  Aligned_cols=92  Identities=10%  Similarity=-0.074  Sum_probs=70.0

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDL-RIEPG-------------PKVWGSLLGSCRIHCNVELAERASKRLFEL-------  488 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------  488 (662)
                      +......+.+.|++++|+..|++. .+.|+             ...|..+..++...|++++|+..+++++++       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            344445555566666666666554 12222             237888888888999999999999998888       


Q ss_pred             CCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          489 EPTNAGNY----VLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       489 ~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +|+++..|    ...+.++...|++++|...|++..+
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99998888    9999999999999999999998765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.10  E-value=3.2e-05  Score=65.72  Aligned_cols=100  Identities=10%  Similarity=-0.089  Sum_probs=67.9

Q ss_pred             CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 006076          390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLG  467 (662)
Q Consensus       390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~  467 (662)
                      +...+..+...+...|++++|...|+...+..  +.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            44556666666666777777777776665432  334566777777777777777777777665 2223 5667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          468 SCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       468 ~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      ++...|++++|...+++++++.|+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            888888888888888888877766

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.09  E-value=0.00037  Score=69.00  Aligned_cols=224  Identities=15%  Similarity=0.083  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHH-HHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076          256 WSAMIACYARNGMAFEALELFREMIMESHDLCPNSV-TMVSVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSALVT  333 (662)
Q Consensus       256 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~  333 (662)
                      ++.+-....+.+..++|++++.+++  .  +.|+.. .++.--..+...+ .++++..+++.+++... -+..+|+.-..
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L--~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~w  131 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIV--R--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLL  131 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH--H--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            3333334444555667888887773  2  234433 3444444444555 46677777766666542 24445555444


Q ss_pred             HHHhc-C-ChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 006076          334 MYARC-G-KLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGG--------KAIQIFKEMIYHGVSPSPISFVSVLGA  400 (662)
Q Consensus       334 ~y~~~-g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a  400 (662)
                      .+.+. + +++++.++++.+.+   +|..+|+.-.-.+.+.|..+        ++++.++++.+..              
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------------  197 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------------  197 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------
Confidence            44444 4 56666666666553   34445554444444444333        4455555544432              


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-------HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHh
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK-------LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRI  471 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~  471 (662)
                                             +-|...|+.....+.+.++       ++++++.++++ ...| |...|+-+-..+..
T Consensus       198 -----------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~  254 (349)
T 3q7a_A          198 -----------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH  254 (349)
T ss_dssp             -----------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             -----------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence                                   2233444444444444433       34444444443 1122 44445444444443


Q ss_pred             cCCH--------------------HHHHHHHHHHHhc------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          472 HCNV--------------------ELAERASKRLFEL------EPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       472 ~g~~--------------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .|+.                    .........+...      ++.++.+...|+++|...|+.++|.++++.+.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          255 FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            3332                    1111111112111      134556677899999999999999999999864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.05  E-value=3.6e-05  Score=62.39  Aligned_cols=98  Identities=17%  Similarity=0.060  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC---CHHHHHHHHHH
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP---GPKVWGSLLGS  468 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~  468 (662)
                      .+..+...+...|++++|...++...+..  +.+...+..+...|.+.|++++|...+++. ...|   +...|..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            33444445555555555555555554321  234455556666666666666666666554 2223   35566666666


Q ss_pred             HHhc-CCHHHHHHHHHHHHhcCCCC
Q 006076          469 CRIH-CNVELAERASKRLFELEPTN  492 (662)
Q Consensus       469 ~~~~-g~~~~a~~~~~~~~~~~p~~  492 (662)
                      +... |+.++|...++++.+..|++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCC
Confidence            6677 77777777777777766654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.03  E-value=5e-05  Score=66.91  Aligned_cols=63  Identities=21%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          459 PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ...|..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|...+++...
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            457778888888899999999999999999999888999999999999999999998888765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.02  E-value=1.6e-05  Score=83.90  Aligned_cols=116  Identities=9%  Similarity=-0.025  Sum_probs=84.5

Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  477 (662)
                      .+.+.|++++|.+.+++..+..  +.+...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            4456677777777777776532  334677777888888888888888887766 3344 56778888888888888888


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 006076          478 AERASKRLFELEPTNAGNYVLLADV--YAAADMWDEVKRVKR  517 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~  517 (662)
                      |+..++++++++|++...+..+..+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888888888888888888887777  778888888888876

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.02  E-value=0.0038  Score=61.75  Aligned_cols=176  Identities=11%  Similarity=-0.029  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcC-ChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHH
Q 006076          224 IMTTLIDMYARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNG-MAFEALELFREMIMESHDLCPNSVTMVSVLQA  299 (662)
Q Consensus       224 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a  299 (662)
                      +++.+-....+.+..++|.++++.+..   .+...||.--..+...| .++++++++..+  .... +-+...|+.--..
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~--L~~n-PKny~aW~hR~wl  132 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEF--AVQN-LKSYQVWHHRLLL  132 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHTT-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH--HHhC-CCcHHHHHHHHHH
Confidence            334444444555566789999998863   36678998888888888 599999999998  4332 2355566665555


Q ss_pred             HHcc-C-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH--------HHHHHHhhCCC---CChhHHHHHHHHH
Q 006076          300 CAAL-A-ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLE--------LGQCVFDHMDK---RDVVSWNSLISSY  366 (662)
Q Consensus       300 ~~~~-~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~m~~---~~~~~~~~li~~~  366 (662)
                      +... + +++++..+++.+++.. +.+..+++--.-.+.+.|.++        ++.+.++++.+   .|..+|+.....+
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL  211 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR  211 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            6555 6 7899999999988764 346667766555555555555        78888887763   5778999888888


Q ss_pred             HhcCC-------hHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCC
Q 006076          367 GVHGY-------GGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAG  405 (662)
Q Consensus       367 ~~~g~-------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g  405 (662)
                      .+.+.       ++++++.++++...  .| |...|+.+-..+.+.|
T Consensus       212 ~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          212 VSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             TTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred             HhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence            77775       56777777777763  34 3445544444444333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.02  E-value=8.2e-05  Score=78.45  Aligned_cols=114  Identities=12%  Similarity=-0.006  Sum_probs=56.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 006076          366 YGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLE  444 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  444 (662)
                      |.+.|++++|++.|++..+.  .| +..++..+..++.+.|++++|.+.+++..+..  +.+...+..+..+|.+.|+++
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence            44455566666666555553  23 24455555555666666666666666555321  224455555666666666666


Q ss_pred             HHHHHHHhc-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006076          445 EAAKIIEDL-RIEP-GPKVWGSLLGS--CRIHCNVELAERASK  483 (662)
Q Consensus       445 ~A~~~~~~m-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~  483 (662)
                      +|.+.+++. ...| +...+..+..+  +...|++++|...++
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666666554 1122 22233333333  555566666666665

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.01  E-value=6.7e-05  Score=78.74  Aligned_cols=160  Identities=11%  Similarity=0.057  Sum_probs=109.9

Q ss_pred             CChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 006076          339 GKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFE  415 (662)
Q Consensus       339 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  415 (662)
                      +++++|...|+...+   .....|..+...|.+.|++++|+..|++..+.  .|+...+          . -+...    
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----  310 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----  310 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----
Confidence            344445444443322   23456777778888888888888888887763  2322110          0 01110    


Q ss_pred             HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          416 SMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       416 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      ...     +.....|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...++++++++|++.
T Consensus       311 ~~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          311 ASE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            010     112567888899999999999999999877 3333 678899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhcCChHHHHH-HHHHHH
Q 006076          494 GNYVLLADVYAAADMWDEVKR-VKRLLE  520 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A~~-~~~~m~  520 (662)
                      .++..+..++.+.|++++|.+ .++.|.
T Consensus       386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          386 AARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875 445444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.01  E-value=2.8e-05  Score=65.12  Aligned_cols=107  Identities=4%  Similarity=-0.051  Sum_probs=56.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC----CCC----HHHHHH
Q 006076          394 FVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI----EPG----PKVWGS  464 (662)
Q Consensus       394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~  464 (662)
                      +..+...+...|++++|...|+...+..  +.+...+..+...|...|++++|...+++. ..    .++    ..+|..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            3334444444555555555555444321  223444555555555555555555555544 11    112    455666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      +...+...|++++|...++++++..| ++.....+..++
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            66677777777777777777777666 344444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.01  E-value=2.7e-05  Score=65.33  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=54.3

Q ss_pred             HHHHHhhcCCHHHHHHHHHhc-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 006076          433 MVDLLGRANKLEEAAKIIEDL-RIEPG-P---KVWGSLLGSCRIHCNVELAERASKRLFELEPTN---AGNYVLLADVYA  504 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~  504 (662)
                      +...+.+.|++++|...|++. ...|+ .   ..|..+..++...|++++|...++++++..|++   +.++..++.+|.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            344555566666666666554 11222 2   355556666666677777777777777666666   555666677777


Q ss_pred             hcCChHHHHHHHHHHHh
Q 006076          505 AADMWDEVKRVKRLLEA  521 (662)
Q Consensus       505 ~~g~~~~A~~~~~~m~~  521 (662)
                      ..|++++|...+++...
T Consensus        88 ~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            77777777777766654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.00  E-value=4.5e-05  Score=77.45  Aligned_cols=137  Identities=10%  Similarity=-0.016  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      ..|..+...|.+.|++++|++.|++..+.  .|+..          ....       .+...+.  -+.+...|..+...
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~~  282 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHHH
Confidence            45777777788888888888888777652  11100          0001       1111111  12246788899999


Q ss_pred             HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 006076          437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  514 (662)
                      |.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++...++.+++.+
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887 4555 677899999999999999999999999999999999999999999998888887765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.00  E-value=1.5e-05  Score=73.01  Aligned_cols=146  Identities=10%  Similarity=-0.026  Sum_probs=79.0

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCh----------------hH
Q 006076          298 QACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK---RDV----------------VS  358 (662)
Q Consensus       298 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~----------------~~  358 (662)
                      ......+.++.+.+.++...+.. ......+..+...|.+.|++++|...|++..+   .+.                ..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            33455667777766665433221 11345677788899999999999999997652   222                45


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLG  438 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  438 (662)
                      |..+..+|...|++++|+..+++..... +.+...+..+..++...|++++|...|+...+..  +.+...+..+..++.
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHH
Confidence            6666666666666666666666666531 2234455555556666666666666666655321  223445555555555


Q ss_pred             hcCCHHHHH
Q 006076          439 RANKLEEAA  447 (662)
Q Consensus       439 ~~g~~~~A~  447 (662)
                      ..++.+++.
T Consensus       168 ~~~~~~~~~  176 (198)
T 2fbn_A          168 KLKEARKKD  176 (198)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHHH
Confidence            544444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.98  E-value=3.2e-05  Score=64.77  Aligned_cols=95  Identities=8%  Similarity=0.041  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 006076          427 VEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN-------AGNYV  497 (662)
Q Consensus       427 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~  497 (662)
                      ...+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|++       +.++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            456788889999999999999999987 22 3467889999999999999999999999999988766       77889


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 006076          498 LLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .++.+|...|++++|.+.+++..+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999998876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.98  E-value=0.0021  Score=63.25  Aligned_cols=190  Identities=11%  Similarity=0.013  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC-hHHHHHHH
Q 006076          306 LEQGKMIHGYILRRGLDSILPVVSALVTMYARCG--KLELGQCVFDHMDK---RDVVSWNSLISSYGVHGY-GGKAIQIF  379 (662)
Q Consensus       306 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~  379 (662)
                      ++++..+++.++... +-+..+|+.-...+.+.|  .++++..+++.+.+   +|..+|+.-.-.+...|. .+++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            455555666665543 234555555555555555  36666666666652   455666666666666666 46777777


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHhcC--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-----
Q 006076          380 KEMIYHGVSPSPISFVSVLGACSHA--------------GLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA-----  440 (662)
Q Consensus       380 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----  440 (662)
                      .++.+.. +-|...|+.....+.+.              +.++++.+++.......  +-|...|+-+-..+.+.     
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence            7777643 22334444443333322              33566666666665432  33555565554444444     


Q ss_pred             ------CCHHHHHHHHHhc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 006076          441 ------NKLEEAAKIIEDL-RIEPGPKVWGSLLGSC-----RIHCNVELAERASKRLFELEPTNAGNYVLLA  500 (662)
Q Consensus       441 ------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  500 (662)
                            +.++++++.++++ ...||. .|..+-.+.     ...+..++....+.++.+++|....-|.-|.
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~  316 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  316 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence                  3456666666655 334543 343221111     1235556666666666677766544444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.97  E-value=4.3e-05  Score=64.29  Aligned_cols=104  Identities=13%  Similarity=-0.017  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSV-EHYACMVD  435 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~  435 (662)
                      +|..+...|.+.|++++|++.|++..+.  .|+ ...|..+..++...|++++|++.++...+.   .|+. ..+..+  
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~--   82 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI--   82 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence            4555555556666666666666655552  332 344455555555555555555555554431   1110 000000  


Q ss_pred             HHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          436 LLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       436 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                                             ..+|..+..++...|++++|+..+++.++..|+
T Consensus        83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence                                   124445555666666666666666666665553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.97  E-value=4e-05  Score=63.80  Aligned_cols=96  Identities=14%  Similarity=0.068  Sum_probs=62.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc
Q 006076          395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH  472 (662)
Q Consensus       395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~  472 (662)
                      ..+...+.+.|++++|...|+...+..  +.+...|..+..++.+.|++++|+..+++. .+.| +...|..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            344455666777777777777776532  335666777777777777777777777765 3334 556777777777788


Q ss_pred             CCHHHHHHHHHHHHhcCCCC
Q 006076          473 CNVELAERASKRLFELEPTN  492 (662)
Q Consensus       473 g~~~~a~~~~~~~~~~~p~~  492 (662)
                      |+.++|...++++++.+|++
T Consensus        99 g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHhCcCC
Confidence            88888888888888877764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.97  E-value=7.8e-06  Score=67.71  Aligned_cols=82  Identities=13%  Similarity=-0.014  Sum_probs=48.0

Q ss_pred             cCCHHHHHHHHHhc-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 006076          440 ANKLEEAAKIIEDL-RI---EP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       440 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  514 (662)
                      .|++++|+..|++. ..   .| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.+.|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            35555555555554 22   13 234555666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHh
Q 006076          515 VKRLLEA  521 (662)
Q Consensus       515 ~~~~m~~  521 (662)
                      .+++...
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.95  E-value=0.00015  Score=60.69  Aligned_cols=99  Identities=14%  Similarity=-0.003  Sum_probs=62.0

Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHH
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRPSV---EHYACMVDLLGRANKLEEAAKIIEDL-RIEPG----PKVWGSLLGSC  469 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~  469 (662)
                      ...+...|++++|...|+.+.+..  +.+.   ..+..+...|.+.|++++|...+++. ...|+    ...+..+..++
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            344555666666666666665432  1122   35556666667777777777776665 22232    45566677777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVL  498 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  498 (662)
                      ...|+.++|...++++++..|+++.....
T Consensus        87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            88888888888888888888876544433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=9.1e-05  Score=77.03  Aligned_cols=163  Identities=9%  Similarity=-0.128  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh----HHHHHHHHHhcCCCHHHHHHHHHHhHHhc---CCCC-ChH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPI----SFVSVLGACSHAGLVEEGKMLFESMRKEH---MIRP-SVE  428 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~  428 (662)
                      ++..+...|...|++++|.+.+.++...- -.++..    ..+.+-..+...|+.+++..++.......   +..+ ...
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            35667777777788888877777665421 111221    12222233445678888888877664321   1112 245


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----c
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDL-----R--IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELE---PTN----A  493 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~  493 (662)
                      ++..|...|...|++++|..++++.     +  -+| ...++..++..|...|++++|...+++++...   +++    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            7788888899999999998888765     1  122 24567788888999999999999998887643   221    2


Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          494 GNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       494 ~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      ..+..++..+...|++++|...+....
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            356677888888899999988777654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.94  E-value=6.5e-05  Score=73.16  Aligned_cols=106  Identities=10%  Similarity=-0.080  Sum_probs=77.3

Q ss_pred             CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 006076          390 SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLG  467 (662)
Q Consensus       390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~  467 (662)
                      +...+..+...+...|++++|...|+...+..  +.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44566677777888888888888888877542  336777778888888888888888888776 4444 5667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076          468 SCRIHCNVELAERASKRLFELEPTNAGNYV  497 (662)
Q Consensus       468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  497 (662)
                      ++...|++++|...++++++++|+++..+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  110 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG  110 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence            888888888888888888887776544433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.93  E-value=0.0027  Score=62.46  Aligned_cols=179  Identities=11%  Similarity=0.048  Sum_probs=132.1

Q ss_pred             hHHHHHHHhhCC---CCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCC-HHHHHHHH
Q 006076          341 LELGQCVFDHMD---KRDVVSWNSLISSYGVHG--YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGL-VEEGKMLF  414 (662)
Q Consensus       341 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~  414 (662)
                      ++++..+++.+.   ..+..+|+.-...+...|  .++++++++.++.+.. +-|...|+.-.-.+.+.|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            566777777665   357788998888888888  4899999999999853 3356677776667777887 69999999


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc------
Q 006076          415 ESMRKEHMIRPSVEHYACMVDLLGRA--------------NKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH------  472 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------  472 (662)
                      +.+.+..  +.|...|+.....+.+.              +.++++++.+.+. ...| |...|+-+-..+...      
T Consensus       169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence            9998754  45777888777776665              5688899998876 3344 778887665555544      


Q ss_pred             -----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HhcCChHHHHHHHHHHHhC
Q 006076          473 -----CNVELAERASKRLFELEPTNAGNYVLLADVY---AAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       473 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~  522 (662)
                           +.+++++..++++++++|++.-++..++...   ...|..++....+.++.+-
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                 4578999999999999999855554443322   2467778888888888763

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.91  E-value=9.8e-05  Score=64.29  Aligned_cols=93  Identities=13%  Similarity=0.055  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcc
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDL----RIEPG----PKVWGSLLGSCRIHCNVELAERASKRLFELEP------TNAG  494 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~  494 (662)
                      .+..+...|...|++++|.+.+++.    +..++    ..++..+...+...|++++|...++++++..+      ....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            4444555555555555555555443    00111    33455666667777777777777777765421      1234


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          495 NYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       495 ~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .+..++.+|...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            677788888888888888888877653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.86  E-value=5.1e-05  Score=76.11  Aligned_cols=147  Identities=10%  Similarity=-0.035  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      ..|..+...|.+.|++++|+..|++...  +.|+...       +...|+.+++...+           ....|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence            3566677777888888888888888776  3454432       22333333333221           12367778888


Q ss_pred             HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCChHHHH
Q 006076          437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY-AAADMWDEVK  513 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~  513 (662)
                      |.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.++..|..+. ...+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888776 3334 6677888888888888888888888888888888888888877774 3456777778


Q ss_pred             HHHHHHHhCC
Q 006076          514 RVKRLLEARG  523 (662)
Q Consensus       514 ~~~~~m~~~~  523 (662)
                      +++++|....
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888776543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.86  E-value=5.7e-05  Score=66.55  Aligned_cols=76  Identities=18%  Similarity=0.091  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA-GNYVLLAD  501 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~  501 (662)
                      +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....|..
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~  140 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI  140 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            4567888899999999999999998876 3344 678899999999999999999999999999999876 33434433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.81  E-value=4.2e-05  Score=66.02  Aligned_cols=69  Identities=16%  Similarity=0.109  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc-C-------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDL-R-------IEPG-PKVW----GSLLGSCRIHCNVELAERASKRLFELEPTNAGN  495 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  495 (662)
                      .|..+..++.+.|++++|+..+++. .       +.|+ ...|    .....++...|++++|+..|+++++++|++...
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            6666666777777777766666554 2       3775 4678    899999999999999999999999999988665


Q ss_pred             HH
Q 006076          496 YV  497 (662)
Q Consensus       496 ~~  497 (662)
                      +.
T Consensus       139 ~~  140 (159)
T 2hr2_A          139 TP  140 (159)
T ss_dssp             CT
T ss_pred             HH
Confidence            43

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.81  E-value=0.00012  Score=63.61  Aligned_cols=132  Identities=11%  Similarity=0.006  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC----ChH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVS-PS----PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP----SVE  428 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~  428 (662)
                      ++..+...|...|++++|+..+++..+.... ++    ..++..+...+...|++++|...++...+...-.+    ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444444555555555555555544432100 11    12444555555566666666666655543210001    134


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhcC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDLR----IEP----GPKVWGSLLGSCRIHCNVELAERASKRLFELE  489 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  489 (662)
                      .+..+...+...|++++|.+.+++.-    ..+    ...++..+...+...|+.++|...+++.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            55666666677777777776666540    011    13456667777778888888888888776643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.81  E-value=4.8e-05  Score=76.32  Aligned_cols=113  Identities=10%  Similarity=-0.078  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 006076          393 SFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH  472 (662)
Q Consensus       393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~  472 (662)
                      .+..+...+.+.|++++|...|+...+.   .|+..       .+...|+.+++...+.       ...|..+..++...
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~  243 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence            4556667788889999999999887653   34432       1334455555544332       23788899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      |++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.00028  Score=73.23  Aligned_cols=118  Identities=10%  Similarity=-0.041  Sum_probs=75.7

Q ss_pred             HhcCChHHHHHHHhhCCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HhHHHHHHHHH
Q 006076          336 ARCGKLELGQCVFDHMDK--------R-DVVSWNSLISSYGVHGYGGKAIQIFKEMIYH--GV--SPS-PISFVSVLGAC  401 (662)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~--------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~  401 (662)
                      ...|+.+.|..++.....        + -..++..+...|...|++++|..++++....  +.  +|. ..++..+...|
T Consensus       106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
T 4b4t_Q          106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY  185 (434)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            344555555555544321        1 1235667777888888888888888776653  11  111 24677777888


Q ss_pred             hcCCCHHHHHHHHHHhHHhcC-CC-C-C--hHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          402 SHAGLVEEGKMLFESMRKEHM-IR-P-S--VEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~-~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      ...|++++|..+++....... +. | .  ...+..+...+...|++++|...|.+.
T Consensus       186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            888999998888887654321 11 1 1  345677778888889999988777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.75  E-value=0.0014  Score=70.45  Aligned_cols=168  Identities=8%  Similarity=-0.062  Sum_probs=131.0

Q ss_pred             hHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCC--
Q 006076          341 LELGQCVFDHMDK---RDVVSWNSLISSYGVHGY----------GGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAG--  405 (662)
Q Consensus       341 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--  405 (662)
                      -++|.+.++.+..   .+..+|+.--..+...|+          ++++++.++++.+.. +-+..+|..-.-++.+.|  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence            3566777776653   345577776666666666          889999999998853 224567777777778888  


Q ss_pred             CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc----------
Q 006076          406 LVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN-KLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH----------  472 (662)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----------  472 (662)
                      +++++.+.++.+.+..  +-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...          
T Consensus       124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence            6799999999998653  446778888888888888 899999998888 4444 778888877776653          


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076          473 ----CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE  511 (662)
Q Consensus       473 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  511 (662)
                          +.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                557899999999999999999999999999999888655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.73  E-value=7.4e-05  Score=78.39  Aligned_cols=123  Identities=9%  Similarity=0.025  Sum_probs=91.4

Q ss_pred             HhcCCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCC-HHHHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHM--IRP----SVEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPG-PKVWGS  464 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~  464 (662)
                      +...|++++|..+++...+...  +.|    ...+++.|..+|...|++++|+.++++.         +..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4466777777777766654321  112    2456788888888888888888877765         23444 356888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          465 LLGSCRIHCNVELAERASKRLFE-----LEPTNAG---NYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      |...|...|++++|+.+++++++     ++|+.+.   ....|..++...|++++|+.++++++++-
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998875     4676554   45578888999999999999999998754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.72  E-value=4.2e-05  Score=63.18  Aligned_cols=92  Identities=9%  Similarity=0.003  Sum_probs=59.2

Q ss_pred             CCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006076          404 AGLVEEGKMLFESMRKEHM-IRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAER  480 (662)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~  480 (662)
                      .|++++|...|+...+... -+.+...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            4566666666666653100 0223556677777777777777777777766 2233 56677777778888888888888


Q ss_pred             HHHHHHhcCCCCcch
Q 006076          481 ASKRLFELEPTNAGN  495 (662)
Q Consensus       481 ~~~~~~~~~p~~~~~  495 (662)
                      .++++++..|+++..
T Consensus        83 ~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           83 LLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHCCCHHH
T ss_pred             HHHHHHHhCCCcHHH
Confidence            888888888876543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.70  E-value=8.2e-05  Score=60.34  Aligned_cols=92  Identities=12%  Similarity=-0.036  Sum_probs=73.7

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN------AGNYV  497 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  497 (662)
                      +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4566777888888899999999888876 2233 67888889999999999999999999999999988      66777


Q ss_pred             HHHHHHHhcCChHHHHHHHH
Q 006076          498 LLADVYAAADMWDEVKRVKR  517 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~~~  517 (662)
                      .++.++...|++++|...++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            78888877777766655443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.68  E-value=0.00019  Score=57.17  Aligned_cols=65  Identities=22%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            36778889999999999999999999999999999999999999999999999999999998764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.67  E-value=0.0002  Score=55.46  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=66.5

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIE-PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      +...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++.+|+++..+..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3556777788888888888888888776 223 36677888888999999999999999999999999888888888888


Q ss_pred             HhcC
Q 006076          504 AAAD  507 (662)
Q Consensus       504 ~~~g  507 (662)
                      .+.|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            7654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.59  E-value=0.00041  Score=70.37  Aligned_cols=113  Identities=9%  Similarity=0.024  Sum_probs=82.9

Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 006076          391 PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEP-GPKVWGSLLGSC  469 (662)
Q Consensus       391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~  469 (662)
                      ...+..+...+.+.|++++|.+.|+...+..   +...          .....+++.      ...| +..+|..+..++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence            3456666667777777777777777665321   1100          000111111      1223 457788899999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          470 RIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988763

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.56  E-value=0.00023  Score=58.25  Aligned_cols=77  Identities=10%  Similarity=0.029  Sum_probs=62.7

Q ss_pred             HHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          445 EAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       445 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +|++.|++. ...| +...|..+...+...|++++|...++++++.+|+++..|..++.+|...|++++|...+++..+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555554 3344 5777888888888999999999999999999999888899999999999999999999988765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.55  E-value=0.00067  Score=71.05  Aligned_cols=94  Identities=16%  Similarity=0.059  Sum_probs=54.5

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMDK--RD----------------VVSWNSLISSYGVHGYGGKAIQIFKEMIYH  385 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  385 (662)
                      ....+..+...|.+.|++++|...|++..+  |+                ...|..+..+|.+.|++++|+..|++.++.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            355778889999999999999999997753  22                244555555555555555555555555442


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076          386 GVSPSPISFVSVLGACSHAGLVEEGKMLFESMR  418 (662)
Q Consensus       386 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  418 (662)
                      . +.+...+..+..++...|++++|...|+...
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al  378 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL  378 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            1 1123344444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.49  E-value=7.8e-05  Score=64.21  Aligned_cols=85  Identities=11%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             hcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076          439 RANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCN----------VELAERASKRLFELEPTNAGNYVLLADVYAAA  506 (662)
Q Consensus       439 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  506 (662)
                      +.+++++|.+.+++. ...| +...|..+..++...++          +++|+..++++++++|++..+|..++++|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            344555566555544 2223 45555555555555544          56999999999999999999999999999987


Q ss_pred             C-----------ChHHHHHHHHHHHhCC
Q 006076          507 D-----------MWDEVKRVKRLLEARG  523 (662)
Q Consensus       507 g-----------~~~~A~~~~~~m~~~~  523 (662)
                      |           ++++|.+.|++..+.+
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            5           8999999999988743

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.32  E-value=0.0013  Score=51.42  Aligned_cols=69  Identities=13%  Similarity=0.018  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          456 EPGPKVWGSLLGSCRIHCN---VELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       456 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      ++|+..|..+..++...++   .++|..+++++++++|+++.+...++..+.+.|++++|...++++.+.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4577788888888765555   79999999999999999999999999999999999999999999987653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.26  E-value=0.00063  Score=71.29  Aligned_cols=115  Identities=15%  Similarity=0.038  Sum_probs=86.3

Q ss_pred             HHHhhcCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chH
Q 006076          435 DLLGRANKLEEAAKIIEDL---------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE-----LEPTNA---GNY  496 (662)
Q Consensus       435 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~  496 (662)
                      ..+...|++++|+.++++.         +..|+ ..+++.|..+|...|++++|+.+++++++     ++|+.+   .++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3466789999999998765         12333 35789999999999999999999999875     355544   568


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHH
Q 006076          497 VLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK  567 (662)
Q Consensus       497 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~  567 (662)
                      ..|+.+|...|++++|..++++..+--.                  ..-...||...++...+.+...+++
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~  449 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELR  449 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999998764110                  1123579988877766666555544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00089  Score=53.96  Aligned_cols=66  Identities=11%  Similarity=-0.092  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          457 PGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ++...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            356678889999999999999999999999999999999999999999999999999999998864

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.21  E-value=0.00037  Score=60.01  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC----------HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhc--
Q 006076          407 VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK----------LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIH--  472 (662)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--  472 (662)
                      +++|.+.++...+..  +.+...|..+..++...|+          +++|+..|++. .+.| +...|..+..+|...  
T Consensus        18 feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           18 FEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            444444444444321  2234444444444444433          34666666655 3344 445666666666655  


Q ss_pred             ---------CCHHHHHHHHHHHHhcCCCCc
Q 006076          473 ---------CNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       473 ---------g~~~~a~~~~~~~~~~~p~~~  493 (662)
                               |++++|...|+++++++|++.
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                     589999999999999999874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.17  E-value=0.0014  Score=67.68  Aligned_cols=116  Identities=17%  Similarity=0.136  Sum_probs=84.4

Q ss_pred             HHHHhhcCCHHHHHHHHHhc-C-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---cch
Q 006076          434 VDLLGRANKLEEAAKIIEDL-R-----IEPG----PKVWGSLLGSCRIHCNVELAERASKRLFE-----LEPTN---AGN  495 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m-~-----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~  495 (662)
                      +.-+.+.|++++|++++++. .     +.|+    ..+++.|..+|...|++++|+.+++++++     +.|+.   ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34455677888888777655 1     2222    35688888899999999999999998875     34444   456


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEeecCCCCccHHHHHHHHHHHHHHHH
Q 006076          496 YVLLADVYAAADMWDEVKRVKRLLEARGLQKVPGRSRIEVKRKMYSFVSVDEFHPQFEQLHALLINLSAEMK  567 (662)
Q Consensus       496 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~  567 (662)
                      +..|+.+|...|++++|..++++..+--.                  ..-...||...++...+.+...+|+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence            78899999999999999999998764100                  1223579999988888877777765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.14  E-value=0.006  Score=51.70  Aligned_cols=114  Identities=10%  Similarity=-0.059  Sum_probs=54.8

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKII  450 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  450 (662)
                      +.++|++.|++..+.| .|+..    +...|...+.+++|.++|+...+.    -++..+..|..+|..-.         
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~---------   71 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGK---------   71 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCS---------
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCC---------
Confidence            4556666666665554 22222    334444445555555555555431    23444444444444400         


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 006076          451 EDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA----ADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       451 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~  523 (662)
                                         ...++.++|...+++..+.+  ++.++..|+.+|..    .+++++|.+.+++..+.|
T Consensus        72 -------------------g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           72 -------------------YVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             -------------------SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             -------------------CCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence                               00344555555555554442  34455555555555    555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.09  E-value=0.0094  Score=63.91  Aligned_cols=149  Identities=9%  Similarity=0.008  Sum_probs=120.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006076          369 HGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGL----------VEEGKMLFESMRKEHMIRPSVEHYACMVDLL  437 (662)
Q Consensus       369 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  437 (662)
                      ....++|++.++++..  +.|+. ..|+.--.++.+.|+          ++++.+.++.+.+..  +-+...|+.-.-.+
T Consensus        42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l  117 (567)
T 1dce_A           42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL  117 (567)
T ss_dssp             TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            3345788999999998  56765 445555555555566          899999999998754  45778888888888


Q ss_pred             hhcC--CHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc------
Q 006076          438 GRAN--KLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHC-NVELAERASKRLFELEPTNAGNYVLLADVYAAA------  506 (662)
Q Consensus       438 ~~~g--~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------  506 (662)
                      .+.|  ++++++++++++ .. ..+...|+.-.......| ..+++.+.++++++.+|.|..+|...+.++.+.      
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            8999  779999999998 33 347889998888888888 899999999999999999999999998888774      


Q ss_pred             --------CChHHHHHHHHHHHh
Q 006076          507 --------DMWDEVKRVKRLLEA  521 (662)
Q Consensus       507 --------g~~~~A~~~~~~m~~  521 (662)
                              ++++++.+.+++...
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHh
Confidence                    567888888877655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.04  E-value=0.0021  Score=49.50  Aligned_cols=65  Identities=18%  Similarity=0.228  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      +...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            35678888899999999999999999999999999999999999999999999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.02  E-value=0.0028  Score=51.57  Aligned_cols=80  Identities=10%  Similarity=0.030  Sum_probs=50.9

Q ss_pred             HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076          410 GKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       410 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                      +...|+...+..  +.+...+..+...|.+.|++++|...+++. ...| +...|..+..++...|+.++|...++++++
T Consensus         4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555554321  234566666777777777777777776665 2223 456677777777777777777777777777


Q ss_pred             cCCC
Q 006076          488 LEPT  491 (662)
Q Consensus       488 ~~p~  491 (662)
                      +.|.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            6654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.02  E-value=0.0043  Score=52.62  Aligned_cols=106  Identities=8%  Similarity=-0.079  Sum_probs=80.8

Q ss_pred             CChHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----CCCHHHHHHH
Q 006076          339 GKLELGQCVFDHMDK-RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH----AGLVEEGKML  413 (662)
Q Consensus       339 g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~  413 (662)
                      +++++|.+.|++..+ .+....  |...|...+..++|++.|++..+.|   +...+..|...|..    .+++++|.++
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            467889999987653 344455  7777777788999999999999875   56777777777777    7899999999


Q ss_pred             HHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhc
Q 006076          414 FESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEAAKIIEDL  453 (662)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m  453 (662)
                      |+...+.    -++..+..|..+|..    .+++++|.++|++.
T Consensus        84 ~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           84 YSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            9988742    356677777777776    67777777777665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.95  E-value=0.00089  Score=68.96  Aligned_cols=82  Identities=13%  Similarity=0.067  Sum_probs=61.3

Q ss_pred             cCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---cchHHHHHH
Q 006076          440 ANKLEEAAKIIEDL---------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFE-----LEPTN---AGNYVLLAD  501 (662)
Q Consensus       440 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~  501 (662)
                      .|++++|+.++++.         +..|+ ..+++.|..+|...|++++|+.+++++++     ++|+.   ...|+.|+.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46677777766654         12233 35688888888889999999998888875     34444   456888999


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q 006076          502 VYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       502 ~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +|..+|++++|..++++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            99999999999999998764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.80  E-value=0.019  Score=56.71  Aligned_cols=47  Identities=13%  Similarity=0.092  Sum_probs=28.0

Q ss_pred             CCChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHH
Q 006076          353 KRDVVSWNSLISSYG--VHG---YGGKAIQIFKEMIYHGVSPSP-ISFVSVLGAC  401 (662)
Q Consensus       353 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~  401 (662)
                      ..+..+|...+.+..  ..+   ...+|+.+|++..+  ..|+. ..+..+.-++
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~  243 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD  243 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            346667777766543  233   34688889998888  56764 3444333333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.70  E-value=0.008  Score=47.48  Aligned_cols=62  Identities=11%  Similarity=0.136  Sum_probs=35.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076          355 DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMR  418 (662)
Q Consensus       355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  418 (662)
                      +...|..+...|...|++++|+..|++..+.  .| +...|..+..++...|++++|.+.|+...
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555666666666666666666666553  23 23455555556666666666666666554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.67  E-value=0.17  Score=41.37  Aligned_cols=139  Identities=9%  Similarity=0.028  Sum_probs=98.2

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006076          368 VHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAA  447 (662)
Q Consensus       368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  447 (662)
                      -.|..++..++..+.....   +..-|+.++--....-+-+-..++++.+-+.+.              ...+|++....
T Consensus        19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKrVi   81 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSVV   81 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHHHH
Confidence            3566677777777666532   344455555544444555555555555543322              23567777777


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076          448 KIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ  525 (662)
Q Consensus       448 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  525 (662)
                      ..+-.+.  .+......-+......|+.+.-..++..++..+|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus        82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            7777665  344556677888889999999999999987777777899999999999999999999999999999984

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.56  E-value=0.013  Score=45.95  Aligned_cols=64  Identities=19%  Similarity=0.246  Sum_probs=50.1

Q ss_pred             HHHHHhhcCCHHHHHHHHHhc-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076          433 MVDLLGRANKLEEAAKIIEDL-RIEP-GPK-VWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY  496 (662)
Q Consensus       433 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  496 (662)
                      ....+.+.|++++|...+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            455677788888888888876 2334 556 788888888888999999999999999999887665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.55  E-value=0.016  Score=59.61  Aligned_cols=93  Identities=13%  Similarity=-0.022  Sum_probs=65.5

Q ss_pred             cCCCHHHHHHHHHHhHHhc--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCCH-HHHHHHH
Q 006076          403 HAGLVEEGKMLFESMRKEH--MIRP----SVEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPGP-KVWGSLL  466 (662)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll  466 (662)
                      +.|++++|..++++..+..  -+.|    ...+++.|..+|...|++++|+.++++.         +..|+. .+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            3467777777776665422  1222    2456788888888888888888887765         234543 5688899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-----cCCCCcch
Q 006076          467 GSCRIHCNVELAERASKRLFE-----LEPTNAGN  495 (662)
Q Consensus       467 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~  495 (662)
                      ..|...|++++|+.+++++++     ++|+.+.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            999999999999999998875     46776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.54  E-value=0.095  Score=58.97  Aligned_cols=102  Identities=12%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076          230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG  309 (662)
Q Consensus       230 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a  309 (662)
                      .....+|++++|.++.+.+.  +...|..+...+.+.|+++.|.+.|.++  ..         |..+...+...++.+..
T Consensus       660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~--~d---------~~~l~~l~~~~~~~~~~  726 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA--HD---------LESLFLLHSSFNNKEGL  726 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH--TC---------HHHHHHHHHHTTCHHHH
T ss_pred             ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc--cC---------hhhhHHHHHHcCCHHHH
Confidence            34567899999999887764  5678999999999999999999999987  21         33444445556676666


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 006076          310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDH  350 (662)
Q Consensus       310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~  350 (662)
                      .++-+.+...|      -++....+|.++|++++|.+++.+
T Consensus       727 ~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          727 VTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence            66555555544      124445556667777777766543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.46  E-value=0.024  Score=58.29  Aligned_cols=98  Identities=10%  Similarity=-0.086  Sum_probs=63.9

Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhc---------CCCCCH-HHHH
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHM--IRP----SVEHYACMVDLLGRANKLEEAAKIIEDL---------RIEPGP-KVWG  463 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~  463 (662)
                      .+.+.|++++|..+++...+...  +.|    ...+++.|...|...|++++|+.++++.         +..|+. .+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            34455666666666665543211  112    2456777777777777777777777654         233443 5688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHH
Q 006076          464 SLLGSCRIHCNVELAERASKRLFE-----LEPTNAGNYV  497 (662)
Q Consensus       464 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~  497 (662)
                      .|...|...|++++|+.+++++++     ++|+.+.+-.
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            888889999999999999988875     4677665443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.45  E-value=0.0072  Score=47.38  Aligned_cols=59  Identities=15%  Similarity=0.230  Sum_probs=53.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          465 LLGSCRIHCNVELAERASKRLFELEPTNAG-NYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            455677889999999999999999999999 99999999999999999999999988643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.10  E-value=0.04  Score=46.75  Aligned_cols=65  Identities=8%  Similarity=-0.129  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          457 PGPKVWGSLLGSCRIHC---NVELAERASKRLFELE-P-TNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ++..+.-.+..++.+.+   +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            56666666666666666   5557777777777766 5 3456666777777777777777777777665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.08  E-value=0.24  Score=55.57  Aligned_cols=131  Identities=12%  Similarity=0.035  Sum_probs=73.4

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 006076          294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGG  373 (662)
Q Consensus       294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~  373 (662)
                      ..++..+.+.|.++.|.++.+...            .-......+|+++.|.++.+.+.  +...|..+...+.+.|+++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~  698 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK  698 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence            445555566666666655442110            11334566788888888877664  4567888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          374 KAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                      .|.+.|.++..         |..+...+...|+.+...++-+..... |      -++.-...|.+.|++++|.+++.++
T Consensus       699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            88888887643         223333334455555544443333221 1      1122333455556666666665554


Q ss_pred             C
Q 006076          454 R  454 (662)
Q Consensus       454 ~  454 (662)
                      .
T Consensus       763 ~  763 (814)
T 3mkq_A          763 Q  763 (814)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.92  E-value=0.089  Score=51.95  Aligned_cols=133  Identities=16%  Similarity=0.069  Sum_probs=92.6

Q ss_pred             CCCCHhHHHHHHHHHhc--CC---CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHh----hcC-------CHHHHHHH
Q 006076          387 VSPSPISFVSVLGACSH--AG---LVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLG----RAN-------KLEEAAKI  449 (662)
Q Consensus       387 ~~p~~~t~~~ll~a~~~--~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~----~~g-------~~~~A~~~  449 (662)
                      .+.+...|...+.+...  .+   ...+|..+|++..+.   .|+ ...|..+.-+|.    ..+       .+.+|.+-
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            45566777777766443  23   357899999999863   675 344443333332    111       11122222


Q ss_pred             HHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          450 IEDLR-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       450 ~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ...+. .+.++.+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+
T Consensus       267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            22232 2457888888877777889999999999999999975 6788899999999999999999998877644

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.69  E-value=0.042  Score=51.97  Aligned_cols=86  Identities=17%  Similarity=0.169  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhc-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChHH
Q 006076          443 LEEAAKIIEDL-RIEPG---PKVWGSLLGSCRI-----HCNVELAERASKRLFELEPTN-AGNYVLLADVYAAA-DMWDE  511 (662)
Q Consensus       443 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~  511 (662)
                      ..+|...+++. .+.|+   ...|..|...|..     -|+.++|++.|+++++++|+. ..+++..++.|+.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45555555554 45565   5678888888887     499999999999999999974 99999999999885 99999


Q ss_pred             HHHHHHHHHhCCCcCCC
Q 006076          512 VKRVKRLLEARGLQKVP  528 (662)
Q Consensus       512 A~~~~~~m~~~~~~~~~  528 (662)
                      |.+.+++....+....|
T Consensus       259 a~~~L~kAL~a~p~~~P  275 (301)
T 3u64_A          259 FDEALDRALAIDPESVP  275 (301)
T ss_dssp             HHHHHHHHHHCCGGGCS
T ss_pred             HHHHHHHHHcCCCCCCC
Confidence            99999999886654333

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.41  E-value=3.5  Score=44.08  Aligned_cols=250  Identities=8%  Similarity=-0.041  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHc
Q 006076          223 HIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAA  302 (662)
Q Consensus       223 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~  302 (662)
                      ..-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+  -..| .........++..+.+
T Consensus        73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l--W~~~-~~~p~~c~~l~~~~~~  148 (618)
T 1qsa_A           73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL--WLTG-KSQPNACDKLFSVWRA  148 (618)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH--HSCS-SCCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--HhCC-CCCcHHHHHHHHHHHH
Confidence            3445556667778888888886666 4345555556677778888887777777766  4444 2334455566666665


Q ss_pred             cCCHHH--HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHhcCChHHHHHHHhhCCCCChhH---HHHHHHH
Q 006076          303 LAALEQ--GKMIHGYILRRG-----------LDSIL-PVVSALVTMYARCGKLELGQCVFDHMDKRDVVS---WNSLISS  365 (662)
Q Consensus       303 ~~~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~  365 (662)
                      .|.+..  ..+=+..+...|           +.++. .....++..+.   +...+....... .++...   +..-+.-
T Consensus       149 ~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~r  224 (618)
T 1qsa_A          149 SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFAS  224 (618)
T ss_dssp             TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHH
Confidence            443322  222222222221           11111 11112221111   122222222221 111111   1111222


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhHHH----HHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 006076          366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFV----SVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN  441 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  441 (662)
                      +.+ .+.+.|..+|....... ..+.....    .+.......+...++...+......   .++.....-.+....+.|
T Consensus       225 lar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~  299 (618)
T 1qsa_A          225 VAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTG  299 (618)
T ss_dssp             HHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHT
T ss_pred             HHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCC
Confidence            333 36788888887776543 22332222    2222333444344555555554322   233333334444455778


Q ss_pred             CHHHHHHHHHhcCCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006076          442 KLEEAAKIIEDLRIEP-GP---KVWGSLLGSCRIHCNVELAERASKRLFE  487 (662)
Q Consensus       442 ~~~~A~~~~~~m~~~p-~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~  487 (662)
                      +++.|...|+.|+..+ +.   .-|  +..+....|+.++|..+++.+.+
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW--~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYW--QADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHH--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHccccccccHhHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Confidence            8888888888885332 21   234  33456677888888888888865

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.35  E-value=0.016  Score=58.56  Aligned_cols=403  Identities=10%  Similarity=0.086  Sum_probs=210.2

Q ss_pred             chhhhccCCCchhhHHhhhhccCCCCccccCCCChHHHHHHHHhCCCchHHHHHHhcCCCCCHhhHHHHHHHHhcCCChH
Q 006076           18 HTNSIAHLPPKPSSVCCCVSLNSSTTPTSLSSRNKNELIQSLCKQGNLRQALDVLSIEPNPTQHTYELLLLSCTHHNSLS   97 (662)
Q Consensus        18 ~~~li~~y~~~~~A~~~f~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~p~~~~~~~ll~~~~~~~~~~   97 (662)
                      .+.||.--.+++.|...= ++...+  ..|+.     +-.+..+.++..+|++.|-+..  |...|..++.++.+.|.++
T Consensus        31 ~~VL~e~i~~ldRa~eyA-~~~n~p--~VWs~-----LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~e  100 (624)
T 3lvg_A           31 VQVLIEHIGNLDRAYEFA-ERCNEP--AVWSQ-----LAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWE  100 (624)
T ss_dssp             TTTCCGGGCCSTTTTTSS-SSCCCC--CCSSS-----HHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCT
T ss_pred             HHHHHHhccccHHHHHHH-HHhCCc--cHHHH-----HHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHH
Confidence            344444433777777766 555554  34666     8889999999999988776433  4455778888888888888


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCC
Q 006076           98 DALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGT  177 (662)
Q Consensus        98 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~  177 (662)
                      +-...+....+.  ..++.+=+.|+-+|+|.+++.+-.+++..   +|+.--..+.+-|...|.++.|.-+|..+.....
T Consensus       101 dLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak  175 (624)
T 3lvg_A          101 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR  175 (624)
T ss_dssp             THHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT
T ss_pred             HHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH
Confidence            777777655554  34556667888889888877664433321   2222222233333333333333333222211000


Q ss_pred             ------------------CCCCChhhHHHHHHHHHhCCC--------------------------CccchHHHHHHHHHH
Q 006076          178 ------------------GIRSDRFTYTYVLKACVASSC--------------------------GFSLLKHGKEIHASV  213 (662)
Q Consensus       178 ------------------g~~p~~~t~~~ll~~~~~~~~--------------------------~~~~~~~a~~~~~~~  213 (662)
                                        .-.-+..||--+-.+|...+.                          ..|.+++-..+++.-
T Consensus       176 LAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEag  255 (624)
T 3lvg_A          176 LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA  255 (624)
T ss_dssp             TSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                              001233455555555554443                          122255555555443


Q ss_pred             HHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHc----CCCC-------CHhHHHHHHHHHHHcCChhHHHHHH-----
Q 006076          214 LRHGY-NGIVHIMTTLIDMYARFGCVMYAGFVFSQ----MAVK-------NVVSWSAMIACYARNGMAFEALELF-----  276 (662)
Q Consensus       214 ~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~-----  276 (662)
                      +  |+ ....-+++-|.-.|+|-. .++-.+-++.    +--|       ....|.-++-.|.+-.+++.|....     
T Consensus       256 l--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~  332 (624)
T 3lvg_A          256 L--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT  332 (624)
T ss_dssp             T--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHH
T ss_pred             h--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCCh
Confidence            3  22 234567788888888753 3333333332    2112       3456899999999888888764321     


Q ss_pred             ---HHHh-hhhCCCcCCHHHHHHHHHHHH---------------ccCCHHHHHHHHHHHHHh----------CCCCchhH
Q 006076          277 ---REMI-MESHDLCPNSVTMVSVLQACA---------------ALAALEQGKMIHGYILRR----------GLDSILPV  327 (662)
Q Consensus       277 ---~~m~-~~~~~~~p~~~t~~~ll~a~~---------------~~~~~~~a~~~~~~~~~~----------g~~~~~~~  327 (662)
                         +... ..-..-.+|...|-..++-|.               ..=+...+.+++...-..          .-..+..+
T Consensus       333 ~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aV  412 (624)
T 3lvg_A          333 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSV  412 (624)
T ss_dssp             HHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHH
T ss_pred             hhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHH
Confidence               1100 000001234444444443333               222222222222211000          01122334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC------------CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 006076          328 VSALVTMYARCGKLELGQCVFDHMDK------------RDVVSWNSL-ISSYGVHGYGGKAIQIFKEMIYHGVSPSPISF  394 (662)
Q Consensus       328 ~~~li~~y~~~g~~~~A~~~~~~m~~------------~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  394 (662)
                      -.++-+.|....+++.-+.-.+.-..            .+..-+.-+ ...|.+++++.+++++.++         ...|
T Consensus       413 NeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------Dkly  483 (624)
T 3lvg_A          413 NESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLY  483 (624)
T ss_dssp             HHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCT
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccH
Confidence            44555666666655544433222221            111212211 2234555666665554321         1223


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 006076          395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIE  451 (662)
Q Consensus       395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  451 (662)
                      .-.+...+.+|+.+-+.++++...+.    -+.+.|.+.+-.|-..=+++-++++--
T Consensus       484 kDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlElaW  536 (624)
T 3lvg_A          484 KDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLETAW  536 (624)
T ss_dssp             TGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHHHH
Confidence            33445567788999999999988753    356677777777777778888888743

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.31  E-value=0.12  Score=40.86  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=52.8

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-----R----IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNY  496 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  496 (662)
                      +..-+..|...+.+.|+++.|...|+..     +    -.+...++..|..++.+.|+++.|...++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3444455666666666666666666554     0    123466788889999999999999999999999999986664


Q ss_pred             HHH
Q 006076          497 VLL  499 (662)
Q Consensus       497 ~~l  499 (662)
                      ..+
T Consensus        84 ~n~   86 (104)
T 2v5f_A           84 GNL   86 (104)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.25  E-value=0.12  Score=39.97  Aligned_cols=69  Identities=16%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             CCChHHHHHHHHHHhhcCC---HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          424 RPSVEHYACMVDLLGRANK---LEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       424 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      +.++..+..+..++...++   .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|++
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3566677777777754444   67888887776 3344 55666677777888888888888888888888873

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.41  Score=41.63  Aligned_cols=128  Identities=14%  Similarity=0.105  Sum_probs=77.4

Q ss_pred             HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 006076          334 MYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML  413 (662)
Q Consensus       334 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  413 (662)
                      ...++|+++.|.++.+.+  .+...|..|......+|+++-|.+.|.+..+         |..+.--|.-.|+.+.-.++
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            345678888888777766  3566788888888888888888888876543         22333344445666555444


Q ss_pred             HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076          414 FESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRL  485 (662)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  485 (662)
                      -+....+ |      -++.-...+.-.|+++++.+++.+.+.-|....      ....+|..+.|.++.+.+
T Consensus        83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence            3333221 1      134444556667888888888887753222211      123466677777776654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.79  E-value=0.12  Score=43.72  Aligned_cols=86  Identities=16%  Similarity=0.017  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhc-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 006076          408 EEGKMLFESMRKEHMIRPSVEHYACMVDLLGRAN---KLEEAAKIIEDL-RIE-P--GPKVWGSLLGSCRIHCNVELAER  480 (662)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~  480 (662)
                      ..+++-|....+. + +++..+.-.+.-++++.+   +++++..++++. ... |  ....+-.|.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3344444444332 1 256666666666666666   455666666655 212 3  23445567778899999999999


Q ss_pred             HHHHHHhcCCCCcch
Q 006076          481 ASKRLFELEPTNAGN  495 (662)
Q Consensus       481 ~~~~~~~~~p~~~~~  495 (662)
                      .++.+++.+|++..+
T Consensus        93 y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHCTTCHHH
T ss_pred             HHHHHHhcCCCCHHH
Confidence            999999999987543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.17  E-value=0.015  Score=58.76  Aligned_cols=237  Identities=11%  Similarity=0.093  Sum_probs=135.2

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHH
Q 006076          114 DPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKAC  193 (662)
Q Consensus       114 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~  193 (662)
                      .+.+|..|..++.+.+++.+|.+-|  +...|+..|..+|....+.|.+++-+..+.-.++.    .-++..=+.++-+|
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteLi~ay  126 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFAL  126 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHHHHHH
Confidence            3456666666666666666665544  33446666666777777777776666655544433    12223334566666


Q ss_pred             HhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC------------------------
Q 006076          194 VASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA------------------------  249 (662)
Q Consensus       194 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------------------------  249 (662)
                      ++.+.    +.+-+++.       -.|+..-...+.+-+...|.++.|.-+|..+.                        
T Consensus       127 Ak~~r----L~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK  195 (624)
T 3lvg_A          127 AKTNR----LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK  195 (624)
T ss_dssp             HTSCS----SSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred             HhhCc----HHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66655    33322222       12343334455555666666666666665553                        


Q ss_pred             CCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHH
Q 006076          250 VKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVS  329 (662)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  329 (662)
                      ..++.||-.+-.+|...+.+.-|.-.--.+.     +.||.  ...++..|-..|.+++-..+++..... -.....+++
T Consensus       196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFT  267 (624)
T 3lvg_A          196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFT  267 (624)
T ss_dssp             CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHH
T ss_pred             cCChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHH
Confidence            1367789999899998888776654433331     11111  122344466677777777766655421 134677778


Q ss_pred             HHHHHHHhcCChHHHHHHHhh----CCCC-------ChhHHHHHHHHHHhcCChHHHH
Q 006076          330 ALVTMYARCGKLELGQCVFDH----MDKR-------DVVSWNSLISSYGVHGYGGKAI  376 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~----m~~~-------~~~~~~~li~~~~~~g~~~~A~  376 (662)
                      -|.-.|+|- +.++-.+-++.    +.-|       ....|.-++-.|.+-..++.|.
T Consensus       268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            887778775 34443333332    2212       3446888888888777777664

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.15  E-value=2.6  Score=36.58  Aligned_cols=105  Identities=10%  Similarity=0.081  Sum_probs=73.3

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076          230 DMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG  309 (662)
Q Consensus       230 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a  309 (662)
                      +...++|+++.|.++.+.+  .+...|..|.....+.|+++-|.+.|.+.  .      |   +..+.-.|...|+.+.-
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~--~------D---~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ--H------S---FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT--T------C---HHHHHHHHHHHTCHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh--C------C---HHHHHHHHHHhCCHHHH
Confidence            3456789999999988776  46778999999999999999999999876  2      2   33444445667777776


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006076          310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK  353 (662)
Q Consensus       310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~  353 (662)
                      ..+-+.....|      -++.....+.-.|+++++.++|.+..+
T Consensus        80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r  117 (177)
T 3mkq_B           80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS  117 (177)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence            66655555554      134444455567888887777765543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.34  E-value=4.9  Score=37.99  Aligned_cols=111  Identities=15%  Similarity=0.109  Sum_probs=73.9

Q ss_pred             cCChHHHHHHHhhCCCCCh--hHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhc
Q 006076          338 CGKLELGQCVFDHMDKRDV--VSWNSLISS-YGVH--GY------GGKAIQIFKEMIYHGVSPS---PISFVSVLGACSH  403 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~  403 (662)
                      .|+..+-.+.+.+....++  ..|..++.+ +...  |.      ..+|...+++..+  +.|+   ...|..+...|..
T Consensus       134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~  211 (301)
T 3u64_A          134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA  211 (301)
T ss_dssp             SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence            4455555566666654333  467766653 3332  32      4466666777776  5676   4567777777777


Q ss_pred             C-----CCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhc-CCHHHHHHHHHhc
Q 006076          404 A-----GLVEEGKMLFESMRKEHMIRP--SVEHYACMVDLLGRA-NKLEEAAKIIEDL  453 (662)
Q Consensus       404 ~-----g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m  453 (662)
                      .     |+.++|.+.|++..+   +.|  +..++..+.+.|++. |+.++|.+.+++.
T Consensus       212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4     888888888888875   345  377777888888774 8888888888776

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.68  E-value=0.55  Score=38.24  Aligned_cols=69  Identities=17%  Similarity=0.008  Sum_probs=33.0

Q ss_pred             CChHHHHHHHHHHhhcCCHHH---HHHHHHhc-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          425 PSVEHYACMVDLLGRANKLEE---AAKIIEDL-RIE-P--GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       425 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      ++..+--.+.-++.+.....+   ++.++++. ... |  .....-.|.-++.+.|++++|.+..+.+++.+|+|.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            445555555555555554444   55555544 111 2  111222334455555555555555555555555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.16  E-value=0.63  Score=36.59  Aligned_cols=64  Identities=8%  Similarity=-0.127  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          458 GPKVWGSLLGSCRIHCNVELAERASKRLFELE-------PTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +..-+..|...+...++++.|...++++++..       +..+..+..|+.+|.+.|++++|...+++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44556678889999999999999999998742       23456788999999999999999999998875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.60  E-value=1.3  Score=48.29  Aligned_cols=54  Identities=15%  Similarity=0.026  Sum_probs=50.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      .-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.+..++
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            346778999999999999999999999999999999999999999999999886

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.33  E-value=6.9  Score=32.42  Aligned_cols=65  Identities=8%  Similarity=-0.082  Sum_probs=37.8

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          457 PGPKVWGSLLGSCRIHC---NVELAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      |+..+--.+..++.+..   +..+++.+++.+....|. .......|+-++.+.|++++|.+..+.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44444444444444443   344566666666666653 234455666677777777777777776664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.06  E-value=2.6  Score=34.25  Aligned_cols=86  Identities=16%  Similarity=0.063  Sum_probs=56.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHH---HHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHH
Q 006076          370 GYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE---GKMLFESMRKEHMIRP--SVEHYACMVDLLGRANKLE  444 (662)
Q Consensus       370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~  444 (662)
                      .....+.+-|.+....|. |+..|--.+.-++.++.+...   |+.+++.+.+..  .|  .....-.|.-++.+.|+++
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHH
Confidence            344455566666555553 666666666777777776655   888888776431  23  3445556777788888888


Q ss_pred             HHHHHHHhc-CCCCC
Q 006076          445 EAAKIIEDL-RIEPG  458 (662)
Q Consensus       445 ~A~~~~~~m-~~~p~  458 (662)
                      +|.+.++.+ .++|+
T Consensus        92 ~A~~~~~~lL~~eP~  106 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            888888876 44564

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=88.55  E-value=2.9  Score=34.97  Aligned_cols=51  Identities=12%  Similarity=-0.109  Sum_probs=31.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      +|.++|..+|+.++.+...-+..+...+..-.+.|+++.|.+++......+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            566777777777766543334444555555566777777777777666543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.02  E-value=19  Score=34.48  Aligned_cols=171  Identities=11%  Similarity=0.067  Sum_probs=97.6

Q ss_pred             HHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHH----HHHHhhCCCCCCCChhhHHHHHHH
Q 006076          117 LVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLEL----YRRMNGTGTGIRSDRFTYTYVLKA  192 (662)
Q Consensus       117 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~~~g~~p~~~t~~~ll~~  192 (662)
                      .|.++..-|.+.+++++|.+++..-           ...+.+.|+...|-++    .+...+.  ++++|..+...++..
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~--~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLA--EVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Confidence            3455666678888888888876432           2234555666555443    4444455  677777777777766


Q ss_pred             HHhCCCC-ccchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHc---
Q 006076          193 CVASSCG-FSLLKHGKEIHASVLRHGY--NGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARN---  266 (662)
Q Consensus       193 ~~~~~~~-~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---  266 (662)
                      +...... ..+.+-..+....-.+.|-  ..++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+...   
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~  181 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD  181 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence            6553321 1122233333333344432  246777888888899999999998887643333566666666555544   


Q ss_pred             CChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006076          267 GMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYIL  317 (662)
Q Consensus       267 g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~  317 (662)
                      |...++--+..+.                ++. +...+++..|..++....
T Consensus       182 ~~~~e~dlf~~Ra----------------VL~-yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          182 IEDSTVAEFFSRL----------------VFN-YLFISNISFAHESKDIFL  215 (312)
T ss_dssp             CCHHHHHHHHHHH----------------HHH-HHHTTBHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHH----------------HHH-HHHhcCHHHHHHHHHHHH
Confidence            5544432222221                222 334567777777666543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=87.68  E-value=5.9  Score=33.18  Aligned_cols=54  Identities=11%  Similarity=-0.039  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076          441 NKLEEAAKIIEDL-R-IEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG  494 (662)
Q Consensus       441 g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  494 (662)
                      ++.++|.++|+.+ . .+.=...|-....--.++|++..|.+++.+++++.|.+..
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            4555566665555 1 0111666766666677888889999998888888887543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.70  E-value=14  Score=43.11  Aligned_cols=164  Identities=10%  Similarity=0.016  Sum_probs=96.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCC
Q 006076          226 TTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAA  305 (662)
Q Consensus       226 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~  305 (662)
                      ..++..+.+.+..+.|..+..-.+. +..+--.+..+|...|++++|.+.|.+.   ..|+..+.....          .
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka---a~~~~~~~~l~~----------~  881 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT---SLVLYSHTSQFA----------V  881 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC---CCSCTTCCCSCS----------S
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH---hhhhcccchhhh----------h
Confidence            3456666777888777776665544 4444445667788899999999999865   233322211100          0


Q ss_pred             HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhh----CCCCC--h--hHHHHHHHHHHhcCChHHH
Q 006076          306 LEQGKMIHGYILRRG--LDSILPVVSALVTMYARCGKLELGQCVFDH----MDKRD--V--VSWNSLISSYGVHGYGGKA  375 (662)
Q Consensus       306 ~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----m~~~~--~--~~~~~li~~~~~~g~~~~A  375 (662)
                      ...    ...+....  ...-..-|.-++..+.+.|.++.+.++-..    ....+  .  ..|..+..++...|++++|
T Consensus       882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred             hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence            000    01111111  111233466677777777777776655432    22211  1  2588889999999999999


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHH
Q 006076          376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEE  409 (662)
Q Consensus       376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  409 (662)
                      ...+..+.....+  ...+..++..++..|..+.
T Consensus       958 y~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          958 HVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             GHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence            9988888764333  4556667776666665443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=85.94  E-value=13  Score=30.46  Aligned_cols=83  Identities=16%  Similarity=0.048  Sum_probs=49.0

Q ss_pred             cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006076          338 CGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM  417 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~  417 (662)
                      ||++......+-.+.. +....+.-++.+..+|+-++-.+++.++.. +.+|++.....+.+||.+.|+..++.+++.+.
T Consensus        74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            4444444444443322 222334455666677777777777777533 24666777777777777777777777777777


Q ss_pred             HHhcCC
Q 006076          418 RKEHMI  423 (662)
Q Consensus       418 ~~~~~~  423 (662)
                      .+ .|+
T Consensus       152 C~-kG~  156 (172)
T 1wy6_A          152 CK-KGE  156 (172)
T ss_dssp             HH-TTC
T ss_pred             HH-hhh
Confidence            63 344

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.92  E-value=10  Score=29.06  Aligned_cols=88  Identities=15%  Similarity=0.148  Sum_probs=60.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMI  383 (662)
Q Consensus       304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  383 (662)
                      ...++|..|-+.+...+.  ...+--.=+..+...|++++|..+.+.+.-||+..|-+|-.  .+.|..+++..-+.++.
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   96 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA   96 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            355667666666665543  22222222345678999999999999999999999988865  46677888877777777


Q ss_pred             HcCCCCCHhHHHH
Q 006076          384 YHGVSPSPISFVS  396 (662)
Q Consensus       384 ~~g~~p~~~t~~~  396 (662)
                      .+| .|....|..
T Consensus        97 ~sg-~p~~q~Fa~  108 (116)
T 2p58_C           97 RSQ-DPRIQTFVN  108 (116)
T ss_dssp             TCC-CHHHHHHHH
T ss_pred             hCC-CHHHHHHHH
Confidence            665 455555543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.19  E-value=28  Score=33.61  Aligned_cols=138  Identities=14%  Similarity=0.049  Sum_probs=77.7

Q ss_pred             HHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHH----HHHhhCCCCCCCChhhHHHHHHHH
Q 006076          118 VTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELY----RRMNGTGTGIRSDRFTYTYVLKAC  193 (662)
Q Consensus       118 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~~~g~~p~~~t~~~ll~~~  193 (662)
                      +.++..-|.+.+++++|.+++-.-           ...+.+.|+...|-++-    +...+.  ++++|..+...++..+
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~--~~~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQA--GQRVDGASRGKLLGCL  104 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Confidence            445556678888888888876331           22344556655444433    444445  6777777777777666


Q ss_pred             HhCCCCc-cchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCC
Q 006076          194 VASSCGF-SLLKHGKEIHASVLRHG--YNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGM  268 (662)
Q Consensus       194 ~~~~~~~-~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~  268 (662)
                      ....... .+..-..+...+-.+.|  -..|+.....+...|.+.+++.+|+.-|=.-.++....+..|+.-+...+.
T Consensus       105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~  182 (336)
T 3lpz_A          105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE  182 (336)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            6554311 11112222333333334  234566777788888888888888888743222233566555554444443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=85.07  E-value=10  Score=28.92  Aligned_cols=85  Identities=13%  Similarity=-0.014  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME  282 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  282 (662)
                      -++|..|-+.+...+-  ...+--.-+..+...|++++|..+.+...-||+++|-+|-.  .+.|..+++..-+.++  .
T Consensus        22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l--a   95 (115)
T 2uwj_G           22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL--G   95 (115)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH--H
Confidence            7788888888777663  44444444556778999999999999999999999988765  4778888888888777  5


Q ss_pred             hCCCcCCHHHHH
Q 006076          283 SHDLCPNSVTMV  294 (662)
Q Consensus       283 ~~~~~p~~~t~~  294 (662)
                      ..| .|....|.
T Consensus        96 ~sg-~p~~q~Fa  106 (115)
T 2uwj_G           96 GSS-DPALADFA  106 (115)
T ss_dssp             TCS-SHHHHHHH
T ss_pred             hCC-CHHHHHHH
Confidence            555 44444443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=85.01  E-value=9.4  Score=29.16  Aligned_cols=87  Identities=14%  Similarity=0.108  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          305 ALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       305 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      ..++|..|-+.+...+.  ...+--.=+..+...|++++|..+.+.+.-||+..|-+|-.  .+.|..+++..-+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666665543  22222222345678999999999999999999999988765  467888888888878877


Q ss_pred             cCCCCCHhHHHH
Q 006076          385 HGVSPSPISFVS  396 (662)
Q Consensus       385 ~g~~p~~~t~~~  396 (662)
                      +| .|....|..
T Consensus        97 sg-~p~~q~Fa~  107 (115)
T 2uwj_G           97 SS-DPALADFAA  107 (115)
T ss_dssp             CS-SHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            76 555555543

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=84.98  E-value=11  Score=28.80  Aligned_cols=85  Identities=14%  Similarity=0.085  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhh
Q 006076          203 LKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIME  282 (662)
Q Consensus       203 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  282 (662)
                      -++|..|-+.+...+-  ...+--.-+..+...|++++|..+.+...-||+++|-+|-.+  +.|..+++..-+.++  .
T Consensus        23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l--a   96 (116)
T 2p58_C           23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL--A   96 (116)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH--H
Confidence            7788888888877763  444444445567789999999999999999999999888654  678888888888777  5


Q ss_pred             hCCCcCCHHHHH
Q 006076          283 SHDLCPNSVTMV  294 (662)
Q Consensus       283 ~~~~~p~~~t~~  294 (662)
                      ..| .|....|.
T Consensus        97 ~sg-~p~~q~Fa  107 (116)
T 2p58_C           97 RSQ-DPRIQTFV  107 (116)
T ss_dssp             TCC-CHHHHHHH
T ss_pred             hCC-CHHHHHHH
Confidence            555 44444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=83.55  E-value=7.4  Score=33.22  Aligned_cols=110  Identities=8%  Similarity=-0.038  Sum_probs=54.1

Q ss_pred             HHHHHHhcCChHHHHHHHhhCC-----CCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh-HHHH
Q 006076          331 LVTMYARCGKLELGQCVFDHMD-----KRDV-------VSWNSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPI-SFVS  396 (662)
Q Consensus       331 li~~y~~~g~~~~A~~~~~~m~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~  396 (662)
                      =+..+...|.++.|+-+.+.+.     .|++       .+...+.+++...|++.+|...|++.++.. .-|... +..+
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3555666777777766655432     2332       134455666667777777777777654321 111111 1111


Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR  454 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  454 (662)
                      +-.    .....          ......++.+.---+...|.+.|++++|+.+++.+|
T Consensus       106 ~~~----~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          106 TGN----SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             ccc----cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            100    00000          000122344454556777778888888888887775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=83.08  E-value=3.1  Score=41.75  Aligned_cols=60  Identities=10%  Similarity=-0.030  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ...++.++...|+.+++...++.+...+|-+-..|..|+.+|.++|+..+|.+.|+....
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344566777888888888888888888888888888899999999999999888887654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.65  E-value=45  Score=33.93  Aligned_cols=87  Identities=7%  Similarity=0.126  Sum_probs=53.0

Q ss_pred             HHHHHHhCCCCccchHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCC--H
Q 006076          189 VLKACVASSCGFSLLKHGKEIHASVLRH--GYNGI---VHIMTTLIDMYARFGCVMYAGFVFSQMA--------VKN--V  253 (662)
Q Consensus       189 ll~~~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~--~  253 (662)
                      +...+-..|+    +.+|..++..+...  |..+.   +..+..-+..|...+++..|..++.++.        .|+  .
T Consensus       143 La~i~e~~g~----~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          143 LVEIKKEEGK----IDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHTC----HHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHccC----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            3344445566    77777777776543  22111   3456666777777888887777766542        111  2


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHH
Q 006076          254 VSWSAMIACYARNGMAFEALELFREM  279 (662)
Q Consensus       254 ~~~~~li~~~~~~g~~~~A~~~~~~m  279 (662)
                      .-+..++..+...+++.+|-+.|.+.
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34556666677777777777777666

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.20  E-value=7.3  Score=31.80  Aligned_cols=44  Identities=11%  Similarity=0.026  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006076          477 LAERASKRLFELEPT-NAGNYVLLADVYAAADMWDEVKRVKRLLE  520 (662)
Q Consensus       477 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  520 (662)
                      +|+.+++.+...+|. ....+..|+-++.+.|++++|.+..+.+.
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL  105 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  105 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444442 12333444444555555555555554444

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=80.25  E-value=12  Score=28.71  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006076          269 AFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVT  333 (662)
Q Consensus       269 ~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  333 (662)
                      .-+..+-++.+  ....+.|++....+.|.||.+.+++..|.++++-+...- .+...+|..+++
T Consensus        26 ~~e~rrglN~l--~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTL--VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHH--TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHH--hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            33566667777  677888999999999999999999999999998876542 222445665554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.19  E-value=58  Score=35.54  Aligned_cols=52  Identities=13%  Similarity=0.020  Sum_probs=32.0

Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR  454 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  454 (662)
                      |...|+++.|+++-++....  .+.+-.+|..|...|...|+++.|+-.++.+|
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            34456666666666666542  13345666666666777777777666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	662
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.02
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.97
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.84
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.83
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.36
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.32
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.28
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.25
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.21
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.13
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.02
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.92
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.9
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.8
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.76
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.55
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.3
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.02
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.9
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.74
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.72
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.94
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.41
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.22
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	90.89
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.92
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.52
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	88.49
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.44

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-19  Score=183.08  Aligned_cols=374  Identities=13%  Similarity=0.081  Sum_probs=260.3

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCcc
Q 006076           87 LLSCTHHNSLSDALNVHSHLTDNGFDQDPFLVTKLINVYSHFDSVDDARHVFDKTRR---RTIYVWNALFRALTLAGRGE  163 (662)
Q Consensus        87 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~  163 (662)
                      ...+.+.|++++|.+.+..+++.. +-++.++..+...|.+.|++++|...|++..+   .+..+|..+...|.+.|+++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence            344556778888888888877763 23566677777777778888888877776532   34567777777777777777


Q ss_pred             HHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006076          164 EVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGF  243 (662)
Q Consensus       164 ~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~  243 (662)
                      +|++.+......   .+.+................    ...............                          
T Consensus        85 ~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------------  131 (388)
T d1w3ba_          85 EAIEHYRHALRL---KPDFIDGYINLAAALVAAGD----MEGAVQAYVSALQYN--------------------------  131 (388)
T ss_dssp             HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSC----SSHHHHHHHHHHHHC--------------------------
T ss_pred             cccccccccccc---cccccccccccccccccccc----ccccccccccccccc--------------------------
Confidence            777777777654   11222222222222222222    222222222222111                          


Q ss_pred             HHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 006076          244 VFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDS  323 (662)
Q Consensus       244 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~  323 (662)
                            ......+..........+....+...+.+.  .... +-+...+..+...+...++.+.|...+..+++.. +.
T Consensus       132 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~  201 (388)
T d1w3ba_         132 ------PDLYCVRSDLGNLLKALGRLEEAKACYLKA--IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN  201 (388)
T ss_dssp             ------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred             ------cccccccccccccccccchhhhhHHHHHHh--hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cc
Confidence                  122233333444444555555555555544  2111 1234445555556666777777777777666653 23


Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHH
Q 006076          324 ILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLG  399 (662)
Q Consensus       324 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~  399 (662)
                      +...+..+...|...|++++|...|+...   ..+...|..+...|.+.|++++|+..|++..+  +.|+ ..++..+..
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~  279 (388)
T d1w3ba_         202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLAN  279 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            46677778888888888888888887665   35666788888999999999999999999888  4454 567888888


Q ss_pred             HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 006076          400 ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVEL  477 (662)
Q Consensus       400 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~  477 (662)
                      ++...|++++|.+.++.....  .+.+...+..+...+.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999988764  3567888999999999999999999999986 5566 56778899999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 006076          478 AERASKRLFELEPTNAGNYVLLADVYAAADM  508 (662)
Q Consensus       478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  508 (662)
                      |...++++++++|+++.+|..|+.+|.+.|+
T Consensus       358 A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999998875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.6e-18  Score=174.96  Aligned_cols=354  Identities=12%  Similarity=0.039  Sum_probs=284.6

Q ss_pred             HHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006076          153 FRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMY  232 (662)
Q Consensus       153 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  232 (662)
                      ...+.+.|++++|++.|+++.+.   .+-+...+..+...+...++    +++|...+..+++.. +.+..++..+...|
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~----~~~A~~~~~~al~~~-p~~~~a~~~l~~~~   77 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRR----LDRSAHFSTLAIKQN-PLLAEAYSNLGNVY   77 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHh
Confidence            34566778888888888888765   22245566777777788888    889999888888775 55677888899999


Q ss_pred             HhcCCHHHHHHHHHcCCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHH
Q 006076          233 ARFGCVMYAGFVFSQMAV---KNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQG  309 (662)
Q Consensus       233 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a  309 (662)
                      .+.|++++|...+.....   .+...+..........+....+.......  .... .................+....+
T Consensus        78 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (388)
T d1w3ba_          78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA--LQYN-PDLYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH--HHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccccccccccc--cccc-cccccccccccccccccchhhhh
Confidence            999999999999987753   34455555566666667777766666655  3322 23444444555566777888888


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006076          310 KMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHG  386 (662)
Q Consensus       310 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  386 (662)
                      ...+....... +.+...+..+...+...|++++|...+++..   ..+..+|..+...|...|++++|+..|.+....+
T Consensus       155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  233 (388)
T d1w3ba_         155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS  233 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh
Confidence            88888777664 3456788888999999999999999998765   2456789999999999999999999999998864


Q ss_pred             CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHH
Q 006076          387 VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGS  464 (662)
Q Consensus       387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~  464 (662)
                       +.+...+..+..++.+.|++++|...|+...+..  +.+...+..+...|...|++++|.+.++..  ..+.+...+..
T Consensus       234 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  310 (388)
T d1w3ba_         234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN  310 (388)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhH
Confidence             3456778888889999999999999999987642  346788999999999999999999999877  23457788999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          465 LLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +...+...|++++|...+++++++.|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus       311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-12  Score=129.23  Aligned_cols=238  Identities=13%  Similarity=-0.014  Sum_probs=154.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006076          259 MIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYAR  337 (662)
Q Consensus       259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  337 (662)
                      ....+.+.|++++|+..|++.  ...  .| +..++..+..++...|+++.|...+..+++.. +.+...+..+...|..
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~a--l~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAA--VQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH--HHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH--HHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence            445566777777777777766  322  23 34455555556666666666666666665543 2234455555555555


Q ss_pred             cCChHHHHHHHhhCCC--CChhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          338 CGKLELGQCVFDHMDK--RDVVS-WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       338 ~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      .|++++|.+.++....  |+... +.......                    ...+.......+..+...+...++...+
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence            5555555555554321  11100 00000000                    0000000111122233345667788888


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006076          415 ESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTN  492 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  492 (662)
                      ....+...-.++...+..+...+...|++++|...+++. ...| +..+|..+...+...|++++|...++++++++|++
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence            877654433446778889999999999999999999986 3344 57889999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          493 AGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       493 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +.++..++.+|.+.|++++|.+.+++..+
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.2e-12  Score=125.28  Aligned_cols=265  Identities=13%  Similarity=0.029  Sum_probs=191.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHHHHHc
Q 006076          227 TLIDMYARFGCVMYAGFVFSQMAV--K-NVVSWSAMIACYARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACAA  302 (662)
Q Consensus       227 ~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~a~~~  302 (662)
                      .....|.+.|++++|...|+++.+  | +..+|..+..+|...|++++|+..|.+..  ..  .| +...+..+...+..
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al--~~--~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL--EL--KPDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh--cc--ccccccccccccccccc
Confidence            356678899999999999998753  3 67889999999999999999999999883  22  34 46677778888999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006076          303 LAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEM  382 (662)
Q Consensus       303 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  382 (662)
                      .|++++|.+.+..+........ ..........                ...+.......+..+...+...+|.+.|.+.
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYA-HLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchH-HHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999887542211 1000000000                0011111111223344556677888888888


Q ss_pred             HHcCC-CCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CH
Q 006076          383 IYHGV-SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GP  459 (662)
Q Consensus       383 ~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~  459 (662)
                      ..... .++...+..+...+...|++++|...|+...+..  +-+...|..+...|.+.|++++|.+.|++. ...| +.
T Consensus       163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            76432 2345677788888999999999999999987643  346788999999999999999999999886 3445 57


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----------HHHHHHHHHhcCChHHHHH
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN-----------YVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~  514 (662)
                      .+|..+..+|...|++++|+..++++++++|++...           +..+..++...|+.+.+..
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            789999999999999999999999999988876543           3456666666676665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=6e-08  Score=95.57  Aligned_cols=227  Identities=12%  Similarity=-0.033  Sum_probs=144.8

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCC--CC---chhHHHHHHHHHHhcCChHHHHHHHhhCC-------CC----ChhH
Q 006076          295 SVLQACAALAALEQGKMIHGYILRRGL--DS---ILPVVSALVTMYARCGKLELGQCVFDHMD-------KR----DVVS  358 (662)
Q Consensus       295 ~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~----~~~~  358 (662)
                      .+..++...|++++|...++.+.+...  ..   ....+..+...|...|++..|...+....       .+    ....
T Consensus        56 ~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~  135 (366)
T d1hz4a_          56 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL  135 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHH
Confidence            333444455555555555554443210  00   12233445556666677666666555432       11    1124


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCC-----ChHH
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVS----PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRP-----SVEH  429 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~  429 (662)
                      +..+...+...|+++.+...+.........    ....++......+...+....+...+........-..     ....
T Consensus       136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~  215 (366)
T d1hz4a_         136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA  215 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence            555667777888888888888777664222    1223455555666777888888877776543221111     1334


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCCcchHH
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-----GPKVWGSLLGSCRIHCNVELAERASKRLFE------LEPTNAGNYV  497 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~  497 (662)
                      +..+...+...|++++|...+.+. ...|     ....+..+..++...|++++|...+++++.      ..|....++.
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  295 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL  295 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence            666777888999999999999876 2221     234566778889999999999999998874      3355566888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHh
Q 006076          498 LLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .++.+|.+.|++++|.+.+++..+
T Consensus       296 ~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         296 LLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999987654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=5.8e-08  Score=94.16  Aligned_cols=187  Identities=13%  Similarity=0.055  Sum_probs=147.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C-hhHHHHHHHHHHhcCChHHHHHHH
Q 006076          304 AALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-D-VVSWNSLISSYGVHGYGGKAIQIF  379 (662)
Q Consensus       304 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~  379 (662)
                      +..+++..+++..++...+.+...+..++..+.+.|+++.|..+|+.+.+  | + ...|...+..+.+.|+.++|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34578888898888765566777888889999999999999999998753  3 3 347899999999999999999999


Q ss_pred             HHHHHcCCCCCHhHHHHHHH-HHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc----C
Q 006076          380 KEMIYHGVSPSPISFVSVLG-ACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL----R  454 (662)
Q Consensus       380 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~  454 (662)
                      .++.+.+. .+...|..... -+...|+.+.|..+|+.+.+..  +.+...|...++.+.+.|++++|..+|++.    +
T Consensus       158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            99988542 23333433332 2345689999999999998753  556888999999999999999999999986    2


Q ss_pred             CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 006076          455 IEPG--PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNA  493 (662)
Q Consensus       455 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  493 (662)
                      ..|+  ...|...+.--..+|+.+.+..+.+++.+.-|.+.
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            3332  46899888888899999999999999988887653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.2e-07  Score=93.26  Aligned_cols=287  Identities=10%  Similarity=-0.029  Sum_probs=180.1

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCC--C--C----HhHHHHHHHHHHHcCChhHHHHHHHHHhhhhC--CCcC-CHHHHHHHH
Q 006076          229 IDMYARFGCVMYAGFVFSQMAV--K--N----VVSWSAMIACYARNGMAFEALELFREMIMESH--DLCP-NSVTMVSVL  297 (662)
Q Consensus       229 i~~y~~~g~~~~A~~~f~~~~~--~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~p-~~~t~~~ll  297 (662)
                      ...+...|++++|.++|++..+  |  +    ...++.+...|...|++++|+..|.+......  +..+ ...++..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            4455667777777777765421  1  1    23566666777777777777777776631111  1111 123344455


Q ss_pred             HHHHccCCHHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CChhHHHHH
Q 006076          298 QACAALAALEQGKMIHGYILRR----GLDSI---LPVVSALVTMYARCGKLELGQCVFDHMDK--------RDVVSWNSL  362 (662)
Q Consensus       298 ~a~~~~~~~~~a~~~~~~~~~~----g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~~~~l  362 (662)
                      ..+...|++..+...+......    +....   ...+..+...|...|+++.|...+.....        ....++..+
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            5566777777777777666432    11111   23455667778888888888887776541        123455666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcC--CCCC----HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCC--CCChHHHHHHH
Q 006076          363 ISSYGVHGYGGKAIQIFKEMIYHG--VSPS----PISFVSVLGACSHAGLVEEGKMLFESMRKEHMI--RPSVEHYACMV  434 (662)
Q Consensus       363 i~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li  434 (662)
                      ...+...++..++...+.+.....  ....    ...+..+...+...|++++|...++...+...-  ......+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            677788888888888887665421  1111    123455556777889999999988877532211  11244566788


Q ss_pred             HHHhhcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------cchHH
Q 006076          435 DLLGRANKLEEAAKIIEDL-------RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTN---------AGNYV  497 (662)
Q Consensus       435 ~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~  497 (662)
                      ..|...|++++|...+++.       +..|+ ..+|..+...+...|+.++|...+++++++.+..         ...+.
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~  338 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA  338 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence            8899999999999888765       23333 3567778888999999999999999988764321         12233


Q ss_pred             HHHHHHHhcCChHHHHHH
Q 006076          498 LLADVYAAADMWDEVKRV  515 (662)
Q Consensus       498 ~l~~~~~~~g~~~~A~~~  515 (662)
                      .+...+...++.+++.+-
T Consensus       339 ~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         339 QQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHhcCCChHHHHH
Confidence            455556666777776553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.4e-08  Score=98.80  Aligned_cols=191  Identities=8%  Similarity=0.067  Sum_probs=89.9

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhhCC---CCChhHHHHHHHHHHhcC
Q 006076          295 SVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG-KLELGQCVFDHMD---KRDVVSWNSLISSYGVHG  370 (662)
Q Consensus       295 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g  370 (662)
                      .+-..+.+.+..++|.++++.+++.. +.+..+|+.....+...| ++++|...++...   ..+..+|+.+...+.+.|
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~  126 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR  126 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc
Confidence            33334445555566666666655553 223445555555555544 2555555555443   234445555555555555


Q ss_pred             ChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC------H
Q 006076          371 YGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK------L  443 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~  443 (662)
                      ++++|++.+.++.+.  .| +...|..+...+.+.|++++|.+.++.+.+..  +.+...|+.+...+.+.+.      +
T Consensus       127 ~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~~~~  202 (315)
T d2h6fa1         127 DPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVL  202 (315)
T ss_dssp             CCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred             cHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccchhhhh
Confidence            555555555555552  23 23455555555555555555555555554321  2234444444444443333      3


Q ss_pred             HHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          444 EEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       444 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      ++|++.+.+. ...| +...|..+...+.. ...+++...++.+.++.|+
T Consensus       203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         203 EREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTT
T ss_pred             HHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCC
Confidence            4444444433 2222 34444444333322 2234444444544444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6e-08  Score=94.22  Aligned_cols=190  Identities=11%  Similarity=0.032  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076          254 VSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS-VTMVSVLQACAALA-ALEQGKMIHGYILRRGLDSILPVVSAL  331 (662)
Q Consensus       254 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l  331 (662)
                      ..++.+...+.+.+.+++|++++++++  .  +.|+. ..|+....++...+ ++++|...++.+++.. +-+..+|+.+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai--~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~  118 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAI--E--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR  118 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH--H--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHH
Confidence            456777777888888888888888773  3  34544 45566666666665 4788888888888775 3357788888


Q ss_pred             HHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCC-
Q 006076          332 VTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGL-  406 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-  406 (662)
                      ...+.+.|++++|...|+.+.+   .+...|+.+...+.+.|++++|++.|+++.+.  .| +...|+.+...+.+.+. 
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHcccc
Confidence            8888888888888888887763   46778888888888888888888888888884  44 34566665555555444 


Q ss_pred             -----HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 006076          407 -----VEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL  453 (662)
Q Consensus       407 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  453 (662)
                           +++|.+.+....+..  +.+...|..+...+...| .+++.+.++..
T Consensus       197 ~~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~  245 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG-LSKYPNLLNQL  245 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence                 567888777776542  335667777766665444 45555555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=3.6e-08  Score=92.81  Aligned_cols=199  Identities=11%  Similarity=-0.052  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHh
Q 006076          292 TMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDK--R-DVVSWNSLISSYGV  368 (662)
Q Consensus       292 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~  368 (662)
                      ++..+..++.+.|++++|...|+.+++.. +.++.+++.+..+|.+.|++++|.+.|++..+  | +..+|..+...|..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            44455556667777777777777777654 33566777778888888888888888877652  3 45577778888888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC----H
Q 006076          369 HGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANK----L  443 (662)
Q Consensus       369 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----~  443 (662)
                      .|++++|++.|++..+.  .|+ ......+..++.+.+..+....+......   ..++...++ ++..+.....    .
T Consensus       118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred             HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHH
Confidence            88888888888887774  343 33333333344444554444444444432   122222222 2222222212    2


Q ss_pred             HHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 006076          444 EEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYV  497 (662)
Q Consensus       444 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  497 (662)
                      +.+...+... ...| ...+|..+...+...|++++|...+++++..+|++...|.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            2222221111 1122 2345667788888889999999999999998888755443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.3e-08  Score=94.27  Aligned_cols=193  Identities=10%  Similarity=0.015  Sum_probs=138.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 006076          326 PVVSALVTMYARCGKLELGQCVFDHMD---KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPS-PISFVSVLGAC  401 (662)
Q Consensus       326 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~  401 (662)
                      .++..+..+|.+.|++++|...|++..   ..++.+|+.+..+|.+.|++++|++.|++..+.  .|+ ..++..+..++
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence            466678889999999999999999876   356789999999999999999999999999984  554 46788888999


Q ss_pred             hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc----CCHH
Q 006076          402 SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLR-IEPGPKVWGSLLGSCRIH----CNVE  476 (662)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~----g~~~  476 (662)
                      ...|++++|...|+...+..  +.+......+...+.+.+..+.+..+..... ..++...++. +..+...    +..+
T Consensus       116 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME  192 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence            99999999999999998643  3345555555555666666555555544431 1222222222 2222111    2233


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      .+...+.......|....+|..|+.+|...|++++|.+.+++....+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            33333333344556666788899999999999999999999987644

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=5.4e-09  Score=103.02  Aligned_cols=257  Identities=8%  Similarity=-0.089  Sum_probs=175.9

Q ss_pred             CCHHHHHHHHHcCC--CC-CHhHHHHHHHH----------HHHcCChhHHHHHHHHHhhhhCCCcC-CHHHHHHHHHHHH
Q 006076          236 GCVMYAGFVFSQMA--VK-NVVSWSAMIAC----------YARNGMAFEALELFREMIMESHDLCP-NSVTMVSVLQACA  301 (662)
Q Consensus       236 g~~~~A~~~f~~~~--~~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~t~~~ll~a~~  301 (662)
                      +..++|..++++..  .| +...|+..-..          +...|..++|+.+++..  ...  .| +...+.....++.
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~--l~~--~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC--LRV--NPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH--HHH--CTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHH--HHh--CCCcHHHHHHhhHHHH
Confidence            33466666666553  23 23344432222          23344577888888877  322  24 4445555555555


Q ss_pred             ccC--CHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH
Q 006076          302 ALA--ALEQGKMIHGYILRRGLDSILPVV-SALVTMYARCGKLELGQCVFDHMDK---RDVVSWNSLISSYGVHGYGGKA  375 (662)
Q Consensus       302 ~~~--~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A  375 (662)
                      ..+  +++++...+..+++.... +...+ ..+...+...|..++|...++...+   .+..+|+.+...+.+.|++++|
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            554  578888888888887533 34443 4455677788999999999998874   4667899999999999998888


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-C
Q 006076          376 IQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-R  454 (662)
Q Consensus       376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~  454 (662)
                      ...+.+....  .|+..   .+...+...+..+++...+.......  +++...+..++..+...|+.++|...+.+. +
T Consensus       198 ~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  270 (334)
T d1dcea1         198 GPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR--AEPLFRCELSVEKSTVLQSELESCKELQELEP  270 (334)
T ss_dssp             SSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7666554442  22222   22333445566667777777775432  445556677788888889999999998877 4


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006076          455 IEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYA  504 (662)
Q Consensus       455 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  504 (662)
                      ..| +..+|..+...+...|+.++|...++++++++|.+...|..|...+.
T Consensus       271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            445 45678888889999999999999999999999988888888877765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=3.4e-07  Score=88.53  Aligned_cols=182  Identities=9%  Similarity=0.044  Sum_probs=143.4

Q ss_pred             CChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 006076          339 GKLELGQCVFDHMD----KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLF  414 (662)
Q Consensus       339 g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  414 (662)
                      +..++|..+|++..    ..+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+++.|+++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            44577888888653    34566889899999999999999999999987432223456888899999999999999999


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHH-hhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          415 ESMRKEHMIRPSVEHYACMVDLL-GRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      +.+.+..  +.+...|....... ...|+.+.|..+|+.+  ..+.+...|...+......|+.+.|+.+|++++...|.
T Consensus       158 ~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            9997543  34555565555543 4468999999999987  22346788999999999999999999999999998765


Q ss_pred             Ccc----hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          492 NAG----NYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       492 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ++.    .|...+..-...|+.+.+.++.+++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            543    5666777667889999999999988763

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=1.4e-08  Score=99.87  Aligned_cols=251  Identities=10%  Similarity=-0.073  Sum_probs=177.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHH-H---HHHHHHH-------ccCCHHHHHHHHHHHHHhCCCCchhH
Q 006076          259 MIACYARNGMAFEALELFREMIMESHDLCPNSVTM-V---SVLQACA-------ALAALEQGKMIHGYILRRGLDSILPV  327 (662)
Q Consensus       259 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~-~---~ll~a~~-------~~~~~~~a~~~~~~~~~~g~~~~~~~  327 (662)
                      ++...-+.+..++|++++.+.  ..  ..|+..+. +   .++....       ..+.++++..+++.+++.. +.+...
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~--l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~  109 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQI--LG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT  109 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHH--HH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHhcccccHHHHHHHHHH--HH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence            333333344468999999988  33  34766543 2   2223322       3445788888888888775 345667


Q ss_pred             HHHHHHHHHhcC--ChHHHHHHHhhCC---CCChhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHH
Q 006076          328 VSALVTMYARCG--KLELGQCVFDHMD---KRDVVSWNSL-ISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGA  400 (662)
Q Consensus       328 ~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a  400 (662)
                      +..+...+...+  ++++|...+..+.   .++...|... ...+...+..++|+..++++...  .| +...|..+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~  187 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence            777777776665  4788988888775   3456666544 46777789999999999988874  44 45678888888


Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL--RIEPGPKVWGSLLGSCRIHCNVELA  478 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a  478 (662)
                      +...|++++|...+....+.   .|+   ...+...+...+..+++...+...  ..+++...+..+...+...++.++|
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence            88888888776666554432   121   122334455566777777776655  2234555666777788888999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          479 ERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ...+.+....+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus       262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998763

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.1e-06  Score=74.21  Aligned_cols=140  Identities=8%  Similarity=-0.101  Sum_probs=96.6

Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHH
Q 006076          332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEG  410 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a  410 (662)
                      ...+...|+++.|.+.|.++.+++..+|..+...|...|++++|++.|++..+.  .| +...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence            345677888999999998888888888888888888899999999999888874  44 346777788888888888888


Q ss_pred             HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006076          411 KMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELE  489 (662)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  489 (662)
                      ...|+......  +++...      .|...|           +..+++ ..++..+..++...|++++|...+++++++.
T Consensus        90 ~~~~~kAl~~~--~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQL--RGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTT--TTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhC--ccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            88888775421  111100      000000           001111 2345566677778888888888888888877


Q ss_pred             CCC
Q 006076          490 PTN  492 (662)
Q Consensus       490 p~~  492 (662)
                      |+.
T Consensus       151 ~~~  153 (192)
T d1hh8a_         151 SEP  153 (192)
T ss_dssp             CSG
T ss_pred             CCc
Confidence            764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=6.7e-07  Score=80.16  Aligned_cols=95  Identities=16%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          426 SVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      +...+......|.+.|++++|+..|++. ...| ++..|..+..+|...|++++|+..++++++++|+++.+|..++.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3334444444455555555555555443 2222 3444555555555555555555555555555555555555555555


Q ss_pred             HhcCChHHHHHHHHHHH
Q 006076          504 AAADMWDEVKRVKRLLE  520 (662)
Q Consensus       504 ~~~g~~~~A~~~~~~m~  520 (662)
                      .+.|++++|...+++..
T Consensus        83 ~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          83 LEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            55555555555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.9e-06  Score=69.47  Aligned_cols=103  Identities=11%  Similarity=0.008  Sum_probs=63.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCH
Q 006076          398 LGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNV  475 (662)
Q Consensus       398 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~  475 (662)
                      ...+...|++++|...|+...+..  +.+...|..+..+|.+.|++++|+..+.+. .+ +.++..|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            344556666666666666665432  335556666666666666666666666655 22 23556666666666677777


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076          476 ELAERASKRLFELEPTNAGNYVLLADV  502 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~  502 (662)
                      ++|+..++++++++|+++..+..+.++
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            777777777777777666555555444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.5e-06  Score=70.03  Aligned_cols=92  Identities=11%  Similarity=0.113  Sum_probs=83.3

Q ss_pred             HHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 006076          432 CMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW  509 (662)
Q Consensus       432 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  509 (662)
                      .-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            3467788999999999999987 3344 7788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 006076          510 DEVKRVKRLLEARG  523 (662)
Q Consensus       510 ~~A~~~~~~m~~~~  523 (662)
                      ++|...+++..+..
T Consensus        88 ~~A~~~~~~a~~~~  101 (117)
T d1elwa_          88 EEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=2.9e-06  Score=80.93  Aligned_cols=190  Identities=12%  Similarity=-0.028  Sum_probs=128.6

Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--CHhHHH
Q 006076          330 ALVTMYARCGKLELGQCVFDHMDK-----RD----VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV---SP--SPISFV  395 (662)
Q Consensus       330 ~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~  395 (662)
                      .....|..+|++++|.+.|.+..+     .+    ..+|+.+...|.+.|++++|++.+++....-.   .+  ...++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            345678888888888888876642     12    34788889999999999999999987655211   11  124555


Q ss_pred             HHHHHHh-cCCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCC-------CH-HH
Q 006076          396 SVLGACS-HAGLVEEGKMLFESMRKEH---MIRP-SVEHYACMVDLLGRANKLEEAAKIIEDLR-IEP-------GP-KV  461 (662)
Q Consensus       396 ~ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-------~~-~~  461 (662)
                      .+...|. ..|++++|.+.++...+..   +-++ ...++..+...|.+.|++++|.+.|++.. ..|       .. ..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            6666664 4699999999998875422   1111 14467888999999999999999998861 111       11 23


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHh--cCChHHHHHHHHHH
Q 006076          462 WGSLLGSCRIHCNVELAERASKRLFELEPTNAG-----NYVLLADVYAA--ADMWDEVKRVKRLL  519 (662)
Q Consensus       462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m  519 (662)
                      +...+..+...|+.+.|...+++..+.+|..+.     ....|+.+|..  .+++++|.+.++.+
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            445555677889999999999999999876333     23445666654  35688888877543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.2e-06  Score=72.40  Aligned_cols=117  Identities=9%  Similarity=-0.036  Sum_probs=93.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCC
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCN  474 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~  474 (662)
                      -.+.+.+.|++++|...|+...+..  +.+...|..+...|...|++++|.+.|++. .+.| +...|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            3456778899999999999888643  446788899999999999999999999877 3344 66789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCChHHHHHH
Q 006076          475 VELAERASKRLFELEPTNAGNYVLLADVY--AAADMWDEVKRV  515 (662)
Q Consensus       475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~  515 (662)
                      +++|...+++++.++|+++..+..+..+.  ...+.+++|...
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999988877766554  334456666544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.3e-06  Score=78.24  Aligned_cols=115  Identities=10%  Similarity=-0.094  Sum_probs=86.7

Q ss_pred             CCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHH
Q 006076          389 PSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLL  466 (662)
Q Consensus       389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll  466 (662)
                      |+...+......+.+.|++++|+..|+...+..  +.+...|..+..+|.+.|++++|+..|++. .+.| +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            566666777778888888888888888877542  446777888888888888888888888877 5556 567788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076          467 GSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA  505 (662)
Q Consensus       467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  505 (662)
                      .++...|++++|...++++++++|++...+...+..+..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            888889999999999998888877655544444444433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.32  E-value=8.4e-07  Score=70.99  Aligned_cols=88  Identities=20%  Similarity=0.061  Sum_probs=79.2

Q ss_pred             HHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 006076          432 CMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMW  509 (662)
Q Consensus       432 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  509 (662)
                      .+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+..|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            4566788899999999999987 3445 6888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 006076          510 DEVKRVKRLL  519 (662)
Q Consensus       510 ~~A~~~~~~m  519 (662)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.5e-06  Score=74.66  Aligned_cols=88  Identities=15%  Similarity=0.100  Sum_probs=81.7

Q ss_pred             HHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHH
Q 006076          434 VDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVK  513 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  513 (662)
                      ...+...|++++|++.|+++. +|++.+|..+..++...|++++|+..|+++++++|+++.+|..++.+|.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence            556788999999999999985 6889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 006076          514 RVKRLLEAR  522 (662)
Q Consensus       514 ~~~~~m~~~  522 (662)
                      +.+++....
T Consensus        91 ~~~~kAl~~   99 (192)
T d1hh8a_          91 KDLKEALIQ   99 (192)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999987653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.3e-06  Score=72.37  Aligned_cols=93  Identities=15%  Similarity=0.066  Sum_probs=83.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAAD  507 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  507 (662)
                      +......|.+.|++++|+..|++. .+.| +...|..+...|...|++++|...++++++++|+++.+|..++.+|...|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            344566788999999999999987 3344 77889999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 006076          508 MWDEVKRVKRLLEAR  522 (662)
Q Consensus       508 ~~~~A~~~~~~m~~~  522 (662)
                      ++++|...+++....
T Consensus        93 ~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          93 KFRAALRDYETVVKV  107 (159)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999988764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.4e-06  Score=68.27  Aligned_cols=106  Identities=16%  Similarity=-0.013  Sum_probs=83.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH---HHHHHHHHhc-CCCCCH---HHHHHHHH
Q 006076          395 VSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL---EEAAKIIEDL-RIEPGP---KVWGSLLG  467 (662)
Q Consensus       395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~  467 (662)
                      ..+++.+...+++++|.+.|+...+..  +.++.++..+..+|.+.++.   ++|+.+++++ ...|+.   .+|..+..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            356777888889999999999888643  45778888899998876554   5699999887 344433   36788999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006076          468 SCRIHCNVELAERASKRLFELEPTNAGNYVLLADV  502 (662)
Q Consensus       468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  502 (662)
                      +|...|++++|+..++++++++|++..+...+..+
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            99999999999999999999999987666555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1.9e-05  Score=75.07  Aligned_cols=210  Identities=11%  Similarity=-0.014  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHhhhh--CCCcCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006076          255 SWSAMIACYARNGMAFEALELFREMIMES--HDLCPN-SVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSAL  331 (662)
Q Consensus       255 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  331 (662)
                      .|......|...|++++|++.|.+.....  .+-+|+ ..+|..+..++.+.|++++|...+...++.            
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~------------  106 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------  106 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH------------
Confidence            37777777777888888888777763110  111111 234444455555555555555554443321            


Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHhcCC
Q 006076          332 VTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGV-HGYGGKAIQIFKEMIYH----GVSPS-PISFVSVLGACSHAG  405 (662)
Q Consensus       332 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g  405 (662)
                         +.+.|+...+           ..++..+...|.. .|++++|++.|++..+.    +-.+. ..++..+...+...|
T Consensus       107 ---~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g  172 (290)
T d1qqea_         107 ---FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG  172 (290)
T ss_dssp             ---HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ---hhhcccchhH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence               1111111111           2234444444533 46777777777665431    11111 234566666777777


Q ss_pred             CHHHHHHHHHHhHHhcCCCC----C-hHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC------HHHHHHHHHHHHhc-
Q 006076          406 LVEEGKMLFESMRKEHMIRP----S-VEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG------PKVWGSLLGSCRIH-  472 (662)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~----~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~-  472 (662)
                      ++++|.+.|+.+.+...-.+    . ...+..++..+...|+++.|...+++. .+.|+      ......++.++... 
T Consensus       173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d  252 (290)
T d1qqea_         173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD  252 (290)
T ss_dssp             CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC
Confidence            77777777777654321111    1 122344455566677777777777776 22221      22344555555442 


Q ss_pred             -CCHHHHHHHHHHHHhcCC
Q 006076          473 -CNVELAERASKRLFELEP  490 (662)
Q Consensus       473 -g~~~~a~~~~~~~~~~~p  490 (662)
                       +.+++|...|+++.+++|
T Consensus       253 ~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         253 SEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             TTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHhhcCH
Confidence             345666666655555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.1e-05  Score=67.91  Aligned_cols=134  Identities=12%  Similarity=0.022  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      ..+......|.+.|++++|+..|.+....  -|....            ..+.-......+        ...+|+.+..+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~--------~~~~~~nla~~   71 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQAL--------RLASHLNLAMC   71 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchh--------HHHHHHHHHHH
Confidence            34555667788888888888888887763  111100            000000111111        13467778899


Q ss_pred             HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHH
Q 006076          437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEV  512 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  512 (662)
                      |.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...++++++++|+++.+...+..+..+.+...+.
T Consensus        72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877 4455 7888999999999999999999999999999999999998888887766655544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.1e-05  Score=64.85  Aligned_cols=63  Identities=10%  Similarity=-0.028  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      .+|+.+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            456778888999999999999999999999999999999999999999999999999998764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.00  E-value=0.00094  Score=61.74  Aligned_cols=147  Identities=12%  Similarity=-0.025  Sum_probs=93.6

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----hcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----c
Q 006076          369 HGYGGKAIQIFKEMIYHGVSPSPISFVSVLGAC----SHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----A  440 (662)
Q Consensus       369 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~  440 (662)
                      ..+.+.|...++.....|..+   ....+...+    ........+...+.....    ..+...+..|...|..    .
T Consensus        87 ~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~  159 (265)
T d1ouva_          87 SQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTP  159 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSC
T ss_pred             chhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcc
Confidence            345666777777766655321   111121111    123456666666665543    3456666667766664    4


Q ss_pred             CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHH
Q 006076          441 NKLEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPTNAGNYVLLADVYAA----ADMWDEV  512 (662)
Q Consensus       441 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A  512 (662)
                      .+...+...++...-..+......|...+..    ..+.+.|...|++..+.+  ++..+..|+.+|.+    ..+.++|
T Consensus       160 ~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A  237 (265)
T d1ouva_         160 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQA  237 (265)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             cccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHH
Confidence            4666677776665323466666666655554    568999999999998876  36788889999875    3478899


Q ss_pred             HHHHHHHHhCCC
Q 006076          513 KRVKRLLEARGL  524 (662)
Q Consensus       513 ~~~~~~m~~~~~  524 (662)
                      .+.+++..+.|.
T Consensus       238 ~~~~~kAa~~g~  249 (265)
T d1ouva_         238 IENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHCcC
Confidence            999998887664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.92  E-value=0.00012  Score=61.74  Aligned_cols=62  Identities=10%  Similarity=-0.001  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      .+|..+..+|.+.|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            46677888888889999999999999999999889999999999999999999999888775

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.90  E-value=0.00012  Score=62.71  Aligned_cols=93  Identities=11%  Similarity=0.049  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 006076          428 EHYACMVDLLGRANKLEEAAKIIEDL-RI-EPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAA  505 (662)
Q Consensus       428 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  505 (662)
                      ..|+.+..+|.+.|++++|+..+++. .+ +.+...|..+..++...|++++|...++++++++|+++.+...+..+..+
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45777888899999999999999877 33 34788899999999999999999999999999999999988888888776


Q ss_pred             cCChHH-HHHHHHHHH
Q 006076          506 ADMWDE-VKRVKRLLE  520 (662)
Q Consensus       506 ~g~~~~-A~~~~~~m~  520 (662)
                      .+...+ ..+++..|-
T Consensus       145 ~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         145 AKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHH
Confidence            665543 445555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.88  E-value=5.6e-05  Score=65.04  Aligned_cols=132  Identities=11%  Similarity=0.042  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHH
Q 006076          358 SWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIR-PSVEHYACMVDL  436 (662)
Q Consensus       358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~  436 (662)
                      .+......+...|++++|++.|.+....            +..........+.      .    .+. .....|..+..+
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~----~~~~~~~~~~~nla~~   86 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A----KLQPVALSCVLNIGAC   86 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G----GGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H----HhChhhHHHHHHHHHH
Confidence            3445566677888888888888776541            0000000000000      0    012 245677888899


Q ss_pred             HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHH
Q 006076          437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDE  511 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  511 (662)
                      |.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...++++++++|++..++..|..++.+.....+
T Consensus        87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887 5555 678899999999999999999999999999999998888888777655444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.9e-05  Score=62.57  Aligned_cols=92  Identities=9%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 006076          430 YACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG-------NYVLLA  500 (662)
Q Consensus       430 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~  500 (662)
                      +..+.+.|.+.|++++|+..|++. .+.| +..+|..+..+|...|++++|...++++++++|+++.       +|..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            445777888999999999999877 3334 6788999999999999999999999999999887665       556677


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 006076          501 DVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       501 ~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ..+...+++++|.+.+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            888889999999999987653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.80  E-value=0.00016  Score=60.82  Aligned_cols=126  Identities=10%  Similarity=-0.052  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006076          357 VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDL  436 (662)
Q Consensus       357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  436 (662)
                      ..+......+.+.|++.+|+..|.+....  -|...           ...-....   ....     .....+|+.+...
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~---~~~~-----~~~~~~~~Nla~~   76 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILL---DKKK-----NIEISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHH---HHHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHH---Hhhh-----hHHHHHHhhHHHH
Confidence            45677778888899999999999888763  11110           00000000   0010     1124577889999


Q ss_pred             HhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006076          437 LGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVY  503 (662)
Q Consensus       437 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  503 (662)
                      |.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...++++++++|++..+...+..+.
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999986 4445 7789999999999999999999999999999999988776665544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.78  E-value=0.017  Score=54.59  Aligned_cols=218  Identities=12%  Similarity=0.080  Sum_probs=121.0

Q ss_pred             CChhHHHHHHHHhhcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHH
Q 006076          113 QDPFLVTKLINVYSHFDSVDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKA  192 (662)
Q Consensus       113 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~  192 (662)
                      ||..--..+.+.+.+.|.++.|..+|..+.     .|..++..+.+.++++.|.+++.+..        +..++..+..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~--------~~~~~k~~~~~   78 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFA   78 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC--------CHHHHHHHHHH
Confidence            444444556666777888888888887655     37777788888888888888776542        44577777777


Q ss_pred             HHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCC---CCCHhHHHHHHHHHHHcCCh
Q 006076          193 CVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMA---VKNVVSWSAMIACYARNGMA  269 (662)
Q Consensus       193 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~  269 (662)
                      |.....    ...+     .+.......+......++..|-..|.+++...+++...   ..+...++.++..|++.+ .
T Consensus        79 l~~~~e----~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          79 CVDGKE----FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHTTC----HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-H
T ss_pred             HHhCcH----HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-h
Confidence            776654    3322     22222333455555678888889999999988888643   346677888888888764 4


Q ss_pred             hHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 006076          270 FEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFD  349 (662)
Q Consensus       270 ~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~  349 (662)
                      ++-++.++..     .   +..-...++..|-..+.+++                      ++-.|.+.|.+++|..+.-
T Consensus       149 ~kl~e~l~~~-----s---~~y~~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i  198 (336)
T d1b89a_         149 QKMREHLELF-----W---SRVNIPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMM  198 (336)
T ss_dssp             HHHHHHHHHH-----S---TTSCHHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhc-----c---ccCCHHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHH
Confidence            5555555433     1   11222334555555544433                      4556667777777665543


Q ss_pred             hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006076          350 HMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIY  384 (662)
Q Consensus       350 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  384 (662)
                      .-. +++......+..+.+..+.+...++.....+
T Consensus       199 ~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         199 NHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLE  232 (336)
T ss_dssp             HST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             Hcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence            221 1222233344555555555554444444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.76  E-value=0.00014  Score=62.41  Aligned_cols=65  Identities=9%  Similarity=-0.001  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          458 GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ....|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            45567888889999999999999999999999999999999999999999999999999988863

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=0.015  Score=53.05  Aligned_cols=114  Identities=9%  Similarity=-0.110  Sum_probs=67.3

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCC
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSH----AGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANK  442 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~  442 (662)
                      ....+...+......   .+...+..+...+..    ..+...+..+++...+    ..+......|..+|..    ..+
T Consensus       125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d  197 (265)
T d1ouva_         125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKN  197 (265)
T ss_dssp             CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCC
T ss_pred             hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccc----ccccccccchhhhcccCcccccc
Confidence            445555555555442   244445555555443    3456666666666643    2345555556555554    457


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 006076          443 LEEAAKIIEDLRIEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEPT  491 (662)
Q Consensus       443 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~  491 (662)
                      .++|...|++....-++..+..|...|..    ..+.++|...++++.+.++.
T Consensus       198 ~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         198 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            88888888776323355666666666654    33778888888888777653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.71  E-value=0.00045  Score=59.00  Aligned_cols=63  Identities=8%  Similarity=-0.026  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      .+|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++....
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356667788899999999999999999999999999999999999999999999999998863

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00023  Score=57.07  Aligned_cols=99  Identities=10%  Similarity=-0.060  Sum_probs=68.0

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCC--CCh---hHHHHHHHH
Q 006076          294 VSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKL---ELGQCVFDHMDK--RDV---VSWNSLISS  365 (662)
Q Consensus       294 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~m~~--~~~---~~~~~li~~  365 (662)
                      ..+++.+...+++++|++.|+.+++.+ +.++.++..+..++.+.++.   ++|..+|+++..  |+.   .+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            346666777778888888888887775 34666777777777765544   457777777654  222   256677778


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 006076          366 YGVHGYGGKAIQIFKEMIYHGVSPSPISFV  395 (662)
Q Consensus       366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  395 (662)
                      |.+.|++++|++.|+++++  +.|+..-..
T Consensus        82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~  109 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAK  109 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH--hCcCCHHHH
Confidence            8888888888888888877  567654433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.60  E-value=0.00025  Score=55.98  Aligned_cols=87  Identities=9%  Similarity=-0.065  Sum_probs=47.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006076          362 LISSYGVHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRA  440 (662)
Q Consensus       362 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  440 (662)
                      +...+.+.|++++|+..|++....  .| +..+|..+..++.+.|++++|...|+...+..  +.+...+..+...|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHC
Confidence            344455556666666666665553  33 34455555555556666666666665555321  22355555555555555


Q ss_pred             CCHHHHHHHHHh
Q 006076          441 NKLEEAAKIIED  452 (662)
Q Consensus       441 g~~~~A~~~~~~  452 (662)
                      |++++|.+.+++
T Consensus        98 g~~~~A~~~l~~  109 (112)
T d1hxia_          98 HNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            555555555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=7.1e-06  Score=84.68  Aligned_cols=131  Identities=9%  Similarity=-0.052  Sum_probs=67.9

Q ss_pred             CChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006076          370 GYGGKAIQIFKEMIYHGVSPS-PISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAK  448 (662)
Q Consensus       370 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  448 (662)
                      +.++.|+..+.....  +.|+ ...+..+...+.+.|+.++|...+......   .| ...+..+.+.+...|++++|..
T Consensus       100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~  173 (497)
T d1ya0a1         100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAES  173 (497)
T ss_dssp             HHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHH
Confidence            344444444443332  3333 345556666677777777777766655421   11 3456677777888888888888


Q ss_pred             HHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 006076          449 IIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAA  506 (662)
Q Consensus       449 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  506 (662)
                      .|++. .+.| +...|+.|...+...|+..+|...|.+.+...|+.+.++..|..+|.+.
T Consensus       174 ~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            87776 3344 4567788888888888888888888888888777777777777776544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=0.00036  Score=60.19  Aligned_cols=113  Identities=12%  Similarity=-0.008  Sum_probs=79.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 006076          397 VLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE  476 (662)
Q Consensus       397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~  476 (662)
                      ........|++++|.+.|.....-+   +....     ..+...........-++.    .....+..+...+...|+++
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l-----~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW---RGPVL-----DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC---CSSTT-----GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC---ccccc-----ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence            3346677888888888888876432   21100     000000011111111111    12356788899999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          477 LAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      +|...++++++.+|.+...|..++.+|.+.|++++|.+.|+....
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998754

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.50  E-value=0.042  Score=51.74  Aligned_cols=280  Identities=10%  Similarity=0.034  Sum_probs=155.0

Q ss_pred             CCChhhHHHHHHHHHhCCCCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHH
Q 006076          180 RSDRFTYTYVLKACVASSCGFSLLKHGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAM  259 (662)
Q Consensus       180 ~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l  259 (662)
                      .||..-...+..-|.+.+.    ++.|..++..+.         -|..++..|.+.+++..|.+++.+.  .+..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~l----ye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKM----YDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEV   75 (336)
T ss_dssp             CC----------------C----TTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCC----HHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHH
Confidence            3555555566667777777    888888886432         2456778888899999998888765  366789889


Q ss_pred             HHHHHHcCChhHHHHHHHHHhhhhCCCcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006076          260 IACYARNGMAFEALELFREMIMESHDLCPNSVTMVSVLQACAALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCG  339 (662)
Q Consensus       260 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  339 (662)
                      ...+.+.....-|     .+  .......+......++..|-..|.+++...+++..... -..+...++-|+..|++.+
T Consensus        76 ~~~l~~~~e~~la-----~i--~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QM--CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHTTCHHHH-----HH--TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCcHHHHH-----HH--HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            9888887665433     22  23334456666678888899999999998888877543 2556778889999999875


Q ss_pred             ChHHHHHHHhhCCC-CC----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHH
Q 006076          340 KLELGQCVFDHMDK-RD----------VVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVE  408 (662)
Q Consensus       340 ~~~~A~~~~~~m~~-~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  408 (662)
                      . ++-.+.+..... -|          ...|.-++-.|.+.|++++|+.+.-+     -.|+..-....+..+.+.++++
T Consensus       148 ~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e  221 (336)
T d1b89a_         148 P-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVE  221 (336)
T ss_dssp             H-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTH
T ss_pred             h-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChH
Confidence            3 333333433221 11          11244455555555555555443321     1233322333444455555555


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006076          409 EGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFEL  488 (662)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  488 (662)
                      ...++.....+.   .|  ...+.|+......-+..+..+.++                   +.+++......++...+.
T Consensus       222 ~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~-------------------k~~~l~li~p~Le~v~~~  277 (336)
T d1b89a_         222 LYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFS-------------------KVKQLPLVKPYLRSVQNH  277 (336)
T ss_dssp             HHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHH-------------------HTTCTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHH-------------------hcCCcHHHHHHHHHHHHc
Confidence            554444444321   12  223444444444444444444444                   444555555555554443


Q ss_pred             CCCCcchHHHHHHHHHhcCChHHHHH
Q 006076          489 EPTNAGNYVLLADVYAAADMWDEVKR  514 (662)
Q Consensus       489 ~p~~~~~~~~l~~~~~~~g~~~~A~~  514 (662)
                      +  +...+..|.++|...++++.-++
T Consensus       278 n--~~~vn~al~~lyie~~d~~~l~~  301 (336)
T d1b89a_         278 N--NKSVNESLNNLFITEEDYQALRT  301 (336)
T ss_dssp             C--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             C--hHHHHHHHHHHHhCcchhHHHHH
Confidence            2  34577788888888888655333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.44  E-value=8.5e-05  Score=61.93  Aligned_cols=44  Identities=18%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006076          474 NVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  524 (662)
                      ++++|...|+++++++|++...+..|...       ..|.+++.+..++|+
T Consensus       101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred             hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence            46889999999999999987666555544       355666666666554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0012  Score=53.25  Aligned_cols=59  Identities=8%  Similarity=-0.085  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhH
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMR  418 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  418 (662)
                      +..+...|.+.|++++|+..|.+.++.. +.+...+..+..++.+.|++++|.+.++.+.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            3444555555556666666665555532 1233445555555555555555555555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0001  Score=75.62  Aligned_cols=224  Identities=9%  Similarity=-0.067  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHh---HHHHHHHHHHHcCChhHHHHHHHHHhh
Q 006076          205 HGKEIHASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVV---SWSAMIACYARNGMAFEALELFREMIM  281 (662)
Q Consensus       205 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~  281 (662)
                      +|.+.+.++++.. +.....+..+..+|...|++++|   |+++...|+.   .++.  ....-...+..+++.++..  
T Consensus         4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~--   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKV--EQDLWNHAFKNQITTLQGQ--   75 (497)
T ss_dssp             HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTH--HHHHHHHHTHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhH--HHHHHHHHHHHHHHHHHHh--
Confidence            4666777666542 22234445556666667777665   4444322221   1111  1111111245566777766  


Q ss_pred             hhCCCcCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCh-hH
Q 006076          282 ESHDLCPNSVTMVSVLQAC--AALAALEQGKMIHGYILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV-VS  358 (662)
Q Consensus       282 ~~~~~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~  358 (662)
                      ......++..-....+..+  ...+.++.+.+.+....+.. .++...+..+...+.+.|+.++|...+.....++. .+
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  154 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC  154 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHH
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHH
Confidence            3333334433222222221  11233333333333222221 23455667777788888888888776665443332 46


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006076          359 WNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSP-ISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLL  437 (662)
Q Consensus       359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  437 (662)
                      +..+...+...|++++|+..|++..+  +.|+. .+|+.+...+...|+..+|...|.+....  -+|-...+..|...|
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHH
Confidence            77788888889999999999998888  45654 78888888888899999999888888643  256777888887777


Q ss_pred             hhcC
Q 006076          438 GRAN  441 (662)
Q Consensus       438 ~~~g  441 (662)
                      .+..
T Consensus       231 ~~~~  234 (497)
T d1ya0a1         231 SKAL  234 (497)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            6543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.30  E-value=0.00065  Score=57.14  Aligned_cols=88  Identities=10%  Similarity=-0.095  Sum_probs=64.5

Q ss_pred             HHHHhhcCCHHHHHHHHHhc----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------
Q 006076          434 VDLLGRANKLEEAAKIIEDL----RIEPG----------PKVWGSLLGSCRIHCNVELAERASKRLFELEPT--------  491 (662)
Q Consensus       434 i~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------  491 (662)
                      ...+.+.|++++|+..|++.    +.-|+          ...|+.+..+|...|++++|...+++.+++.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            44455667777777777655    21121          356888888889999999999988888765332        


Q ss_pred             ---CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          492 ---NAGNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       492 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                         ...+|..++.+|...|++++|...+++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               123577899999999999999999998765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.19  E-value=0.00014  Score=60.46  Aligned_cols=49  Identities=8%  Similarity=0.106  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC-----------hHHHHHHHHHHHh
Q 006076          473 CNVELAERASKRLFELEPTNAGNYVLLADVYAAADM-----------WDEVKRVKRLLEA  521 (662)
Q Consensus       473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~  521 (662)
                      +.+++|+..++++++++|+++.+|..++.+|...|+           +++|.+.|++..+
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            346789999999999999999999999999987764           5778888887765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0012  Score=50.01  Aligned_cols=74  Identities=15%  Similarity=0.036  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhc----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 006076          428 EHYACMVDLLGRANKLEEAAKIIEDL----R----IEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVL  498 (662)
Q Consensus       428 ~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  498 (662)
                      ..+-.+...+.+.|++++|...|++.    +    ..++ ..++..|..++.+.|++++|...++++++++|+++.++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            33445666777777777777777654    1    1122 4678889999999999999999999999999999887777


Q ss_pred             HHH
Q 006076          499 LAD  501 (662)
Q Consensus       499 l~~  501 (662)
                      +..
T Consensus        86 l~~   88 (95)
T d1tjca_          86 LKY   88 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.0056  Score=52.34  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDL-RIEP-GPKVWGSLLGSCRIHCNVELAERASKRL  485 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  485 (662)
                      .+..+...+.+.|++++|+..++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3444555555555555555555544 2222 4445555555555555555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.90  E-value=0.0018  Score=59.55  Aligned_cols=122  Identities=15%  Similarity=0.024  Sum_probs=67.8

Q ss_pred             hcCChHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHH
Q 006076          368 VHGYGGKAIQIFKEMIYHGVSP-SPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPS-VEHYACMVDLLGRANKLEE  445 (662)
Q Consensus       368 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~  445 (662)
                      +.|++++|+..+++.++.  .| |...+..+...++..|++++|.+.++...+.   .|+ ...+..+...+...+..++
T Consensus         8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence            457777777777777663  34 3456666666777777777777777776643   343 3444444444444444443


Q ss_pred             HHHHHHhc--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 006076          446 AAKIIEDL--RIEPG-PKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAG  494 (662)
Q Consensus       446 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  494 (662)
                      +..-....  ..+|+ ...+......+...|+.++|...++++.+..|..+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            33222211  11222 222333344566667777777777777777766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.74  E-value=0.0061  Score=50.81  Aligned_cols=63  Identities=13%  Similarity=-0.021  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006076          429 HYACMVDLLGRANKLEEAAKIIEDL--------RIEPG-----PKVWGSLLGSCRIHCNVELAERASKRLFELEPT  491 (662)
Q Consensus       429 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  491 (662)
                      .|+.+..+|.+.|++++|.+.+++.        ...++     ...+..+..+|...|++++|...|++++++.|.
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4555555566666666555555443        11221     224667788899999999999999999887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.72  E-value=0.00059  Score=62.87  Aligned_cols=121  Identities=10%  Similarity=0.050  Sum_probs=85.1

Q ss_pred             HhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006076          401 CSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPG-PKVWGSLLGSCRIHCNVELA  478 (662)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a  478 (662)
                      ..+.|++++|+..++..++..  +.+...+..+...|+..|++++|...++.. ...|+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            346799999999999998753  557899999999999999999999999987 44564 45555555554433333322


Q ss_pred             HHHHHHHHh-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006076          479 ERASKRLFE-LEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARG  523 (662)
Q Consensus       479 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  523 (662)
                      ......... .+|++...+...+..+.+.|+.++|...+++..+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            221111111 234444555667788999999999999999987643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.01  Score=44.54  Aligned_cols=63  Identities=8%  Similarity=-0.141  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006076          460 KVWGSLLGSCRIHCNVELAERASKRLFELEPTN-------AGNYVLLADVYAAADMWDEVKRVKRLLEAR  522 (662)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  522 (662)
                      ..+-.+...+.+.|+++.|...+++++++.|.+       ..++..|+.+|.+.|++++|...+++..+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            334567888999999999999999998765443       357889999999999999999999998864

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.41  E-value=0.38  Score=36.73  Aligned_cols=140  Identities=9%  Similarity=0.014  Sum_probs=96.0

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006076          367 GVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKLEEA  446 (662)
Q Consensus       367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  446 (662)
                      .-.|..++..++..+....   .+..-|+.++--....-+-+-..+.++.+-+.+.+              ..++++...
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~v   75 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV   75 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHH
Confidence            3456677777777776653   24445555555555555555556666655433322              345555555


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006076          447 AKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRLLEARGLQ  525 (662)
Q Consensus       447 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  525 (662)
                      ...+-.+.  .+......-+.....+|+-+.-..+++.+++.+..+|.....++++|.+.|...++.+++.+.-++|++
T Consensus        76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            55555553  244455667788888999999999999988876666889999999999999999999999999999874

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=3.2  Score=40.19  Aligned_cols=56  Identities=11%  Similarity=-0.111  Sum_probs=36.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCC
Q 006076          227 TLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHD  285 (662)
Q Consensus       227 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  285 (662)
                      .-+..+.+.++++.....|..-+ .++..-.....+..+.|+.++|.+.+...  -..|
T Consensus        77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~l--W~~~  132 (450)
T d1qsaa1          77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKEL--WLTG  132 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHH--HSCS
T ss_pred             HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH--HhcC
Confidence            34556677788877666554332 24444556677788888888888887776  4444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.22  E-value=1  Score=35.27  Aligned_cols=49  Identities=10%  Similarity=0.016  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 006076          474 NVELAERASKRLFELEPTNAGNYVLLADVYAA----ADMWDEVKRVKRLLEARGL  524 (662)
Q Consensus       474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  524 (662)
                      +.++|...+++..+.+  ++.+...|+.+|..    ..+.++|.+++++..+.|.
T Consensus        74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            5666777777766654  24556667777665    3467777777777666554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=90.89  E-value=1.9  Score=33.48  Aligned_cols=111  Identities=13%  Similarity=-0.073  Sum_probs=69.5

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHH
Q 006076          371 YGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGR----ANKLEEA  446 (662)
Q Consensus       371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A  446 (662)
                      ++++|+++|++..+.|.   ......+.  .....+.++|.++++...+ .|   ++..+..|..+|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence            56778888888777662   22222222  2345677888888887764 22   45555566666653    3467888


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 006076          447 AKIIEDLRIEPGPKVWGSLLGSCRI----HCNVELAERASKRLFELEP  490 (662)
Q Consensus       447 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p  490 (662)
                      .++|++.--.-++.....|...|..    ..|.++|...+++..+.+.
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888876223345555555555554    3578888888888887664

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=10  Score=36.26  Aligned_cols=413  Identities=10%  Similarity=-0.023  Sum_probs=224.6

Q ss_pred             HHHHHHhCCCchHHHHHHhc-CCCCCHhhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhhcCCC
Q 006076           55 LIQSLCKQGNLRQALDVLSI-EPNPTQHTYELLLLSCTH--HNSLSDALNVHSHLTDNGFDQ-DPFLVTKLINVYSHFDS  130 (662)
Q Consensus        55 li~~~~~~g~~~~A~~~~~~-~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~  130 (662)
                      .+....++|+..++..+... ...| -..|...-..-..  .....   ++...+.+..-.| ........+..+.+.++
T Consensus        12 ~a~~a~~~~~~~~~~~~~~~L~dyp-L~pYl~~~~l~~~~~~~~~~---~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~   87 (450)
T d1qsaa1          12 QIKQAWDNRQMDVVEQMMPGLKDYP-LYPYLEYRQITDDLMNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARRED   87 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHSGGGTTST-THHHHHHHHHHHTGGGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHhhhcCCC-CHHHHHHHHHHhccccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence            34456678888888887772 1223 2334333222222  22333   3434444432111 11223444667778888


Q ss_pred             hHHHHHHHhcCCCCCcchHHHHHHHHHhcCCccHHHHHHHHHhhCCCCCCCChhhHHHHHHHHHhCCCCccchHHHHHHH
Q 006076          131 VDDARHVFDKTRRRTIYVWNALFRALTLAGRGEEVLELYRRMNGTGTGIRSDRFTYTYVLKACVASSCGFSLLKHGKEIH  210 (662)
Q Consensus       131 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~  210 (662)
                      ++.....+..-+ .+...-.....+....|+..+|...+...-..+ ...|+                      ....++
T Consensus        88 w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~----------------------~c~~l~  143 (450)
T d1qsaa1          88 WRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPN----------------------ACDKLF  143 (450)
T ss_dssp             HHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCT----------------------HHHHHH
T ss_pred             HHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCch----------------------HHHHHH
Confidence            888777665433 244444566778888999999999888776552 23333                      223344


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHhhhhCCCcCCH
Q 006076          211 ASVLRHGYNGIVHIMTTLIDMYARFGCVMYAGFVFSQMAVKNVVSWSAMIACYARNGMAFEALELFREMIMESHDLCPNS  290 (662)
Q Consensus       211 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~  290 (662)
                      ..+.+.|. .+...+-.-+......|+...|..+...++..........+...-   ++..+.......       .++.
T Consensus       144 ~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~~-------~~~~  212 (450)
T d1qsaa1         144 SVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-------GATD  212 (450)
T ss_dssp             HHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-------CCCH
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhcC-------CCCh
Confidence            44444442 233333345556667789999999998887655555555554432   233333333211       1233


Q ss_pred             HHHHHHHHHHHc--cCCHHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHH
Q 006076          291 VTMVSVLQACAA--LAALEQGKMIHGYILRRGLDSILPVV---SALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLI  363 (662)
Q Consensus       291 ~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li  363 (662)
                      .....+..+..+  ..+.+.+..++...............   ..+...+...+..+.|...+....  ..+.....-.+
T Consensus       213 ~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~  292 (450)
T d1qsaa1         213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV  292 (450)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHH
Confidence            332333333332  24677777777776654322222111   112222233456666766665443  22333223344


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006076          364 SSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMIRPSVEHYACMVDLLGRANKL  443 (662)
Q Consensus       364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  443 (662)
                      ......++...+...+..|... ..-...-.--+..+....|+.++|..+|.....    .++  -|.-|...  +.|..
T Consensus       293 ~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~  363 (450)
T d1qsaa1         293 RMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEE  363 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCC
T ss_pred             HHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCC
Confidence            4455678888888888876432 112234445677888899999999999998853    233  34333221  11210


Q ss_pred             HHHHHHH-HhcCCCCCHH-HH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006076          444 EEAAKII-EDLRIEPGPK-VW---GSLLGSCRIHCNVELAERASKRLFELEPTNAGNYVLLADVYAAADMWDEVKRVKRL  518 (662)
Q Consensus       444 ~~A~~~~-~~m~~~p~~~-~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  518 (662)
                      -   .+- ...+..++.. .-   ..-+..+...|....|...+..+.+..  ++.-...++.+..+.|.++.|+.....
T Consensus       364 ~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~  438 (450)
T d1qsaa1         364 Y---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA  438 (450)
T ss_dssp             C---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence            0   000 0001111111 10   122345667899999999998887543  345677888889999999999987766


Q ss_pred             HH
Q 006076          519 LE  520 (662)
Q Consensus       519 m~  520 (662)
                      ..
T Consensus       439 ~~  440 (450)
T d1qsaa1         439 GK  440 (450)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.52  E-value=0.77  Score=35.24  Aligned_cols=46  Identities=11%  Similarity=0.028  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006076          476 ELAERASKRLFELEPTNA-GNYVLLADVYAAADMWDEVKRVKRLLEA  521 (662)
Q Consensus       476 ~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~  521 (662)
                      ++|+.+++.+...+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344444444444444332 3444444455555555555555544443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=88.49  E-value=4  Score=30.97  Aligned_cols=84  Identities=15%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             hcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 006076          337 RCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES  416 (662)
Q Consensus       337 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  416 (662)
                      +|+++......+-.+.. +..-.+.-++.+.++|+-++-.++++++.+. -+|++.....+..||.+.|+..++.+++.+
T Consensus        68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~  145 (161)
T d1wy6a1          68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE  145 (161)
T ss_dssp             GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            34444444444443322 2233455567778888888888888887664 477788888888888899998888888888


Q ss_pred             hHHhcCC
Q 006076          417 MRKEHMI  423 (662)
Q Consensus       417 ~~~~~~~  423 (662)
                      ..+ .|+
T Consensus       146 ACe-~G~  151 (161)
T d1wy6a1         146 ACK-KGE  151 (161)
T ss_dssp             HHH-TTC
T ss_pred             HHH-HhH
Confidence            864 344

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.44  E-value=5.1  Score=30.45  Aligned_cols=71  Identities=18%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             CChHHHHHHHHHHhhcC---CHHHHHHHHHhc-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 006076          425 PSVEHYACMVDLLGRAN---KLEEAAKIIEDL-RIEP-GP-KVWGSLLGSCRIHCNVELAERASKRLFELEPTNAGN  495 (662)
Q Consensus       425 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  495 (662)
                      |++.+--...-++.+..   ++++++.++++. ...| +. ..|-.|.-+|.+.|++++|...++++++.+|++..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            44444444555555443   455677777766 2233 32 456667788889999999999999999999987543