Citrus Sinensis ID: 006087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPVS
cccccEEEccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccccccccccccccccccEEEEccccccHHHHHHHHHHccccEEEcccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccEEEEEcccccccEEEEEEcccccccccccccEEccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHcHHHcccccccccccccHHHHHHHHccccHHHHHcccEEEcccccEEEEccc
cccEEEEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHccHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccEEEcccccccHHHHHHHHHHcccccEEcccccccHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHcHcHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHEEEccEEEcccccccccEEEEEEcccccccccEEEEEEcccccccccHHHHHHHHHHHHcccccccccccccEEcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHEHccHHHHccccccccccccEcccccEEEEEcEEEEEEEEcccccccccccEEEccccccccccccccccccccccccHHHHHccccHHHHHHHHHcccccccccHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHcccEEEEcccEEEEEEcc
margsivsaqsrTTSTLLSTLVARLSlssvkcripftrsqylpsirlfcKCSHAHAVEYLTDMTKYREAFSRRMAMaglkphhrialgvsggpdsMALCVLTAgwktggfnqngeageFIDGLLAITVDHglreeskeeANIVSHRvsdmgirceivrcdwldgrpkqghLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAyschddlknHSILLICqggnrdwvedptnrsplfvRNRIrmslgdlsscsfKSELQAVISACRRTRSYVEHVCSNLINEAVTVmdqgyavidleilnpskIEDIFLSKFLALVLQFICqrqrpvrgsTSKLLLHYIRtfpcktsltaagcylcptpgsrgtkalvcssidgplpsklELFQihsdgeqrhcVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRfkldsevtsdsqLMHAVECvgtypsiplqpgqvcyFMNRFFVTWKLIKengsrafprevhndgglgedswnEYCSSCLVGDEMVAELRHMIESDWLYLAKLSkglssgnlplervfidektgqkvekTNLCADYGRLSAKRAILSLKSIpvaarrslpvlvsshgqllsipvs
margsivsaqsrttsTLLSTLVARlslssvkcripfTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLreeskeeanivshrvsdmgirCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGgnrdwvedptnrsPLFVRNRIRMslgdlsscsfKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVfidektgqkvektnlcadygRLSAKRAILSLKSIPVaarrslpvlvsshgqllsipvs
MARGSIVsaqsrttstllstlvarlslssvKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPVS
***************TLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR******ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISD******KRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVS***********
*********QSRTTSTLLSTLVARLS************************CSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW**************RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQR*VRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIK*******************CVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAK**********************QKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPVS
************TTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPVS
****SIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPL*RVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPVS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query662 2.2.26 [Sep-21-2011]
A5ERG8358 tRNA(Ile)-lysidine syntha yes no 0.279 0.516 0.376 3e-25
A8GY99430 tRNA(Ile)-lysidine syntha yes no 0.490 0.755 0.292 1e-22
Q1RGN9430 tRNA(Ile)-lysidine syntha yes no 0.490 0.755 0.292 2e-22
B3CLY6430 tRNA(Ile)-lysidine syntha yes no 0.439 0.676 0.275 2e-22
A5CFP2441 tRNA(Ile)-lysidine syntha yes no 0.419 0.630 0.290 3e-22
C0R4S1431 tRNA(Ile)-lysidine syntha yes no 0.439 0.675 0.275 3e-22
B3CUJ5441 tRNA(Ile)-lysidine syntha yes no 0.419 0.630 0.293 7e-22
Q73FR9431 tRNA(Ile)-lysidine syntha yes no 0.432 0.663 0.277 1e-21
A8GLX9430 tRNA(Ile)-lysidine syntha yes no 0.338 0.520 0.329 3e-20
Q4UN67430 tRNA(Ile)-lysidine syntha yes no 0.315 0.486 0.307 6e-20
>sp|A5ERG8|TILS_BRASB tRNA(Ile)-lysidine synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tilS PE=3 SV=1 Back     alignment and function desciption
 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 85  IALGVSGGPDSMALCVLTAGWKT---GGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
           + L VSGGPDSMAL  L A W+    GG             LLA+TVDHGLR ES+ EA 
Sbjct: 30  LTLAVSGGPDSMALMWLAARWRATRAGGPR-----------LLAVTVDHGLRPESRREAL 78

Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
           +V      +G+    +R  W   +P  G + EAAR  RYRL  +   Q     ++ AH  
Sbjct: 79  MVKQLARQLGLTHRTLR--WSGEKPAAG-IPEAARIARYRLLARAAEQAGASHVVTAHTR 135

Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
           DDQAE  ++RL R SG+ GLA MA  S+            L    +L   +     + +D
Sbjct: 136 DDQAETVLMRLLRGSGIAGLAAMAPVSRRDGLLLARPLLSLSKARLLATLRSAGIAFADD 195

Query: 262 PTNRSPLFVRNRIRMSLGDLSS 283
           PTNR P F R R+R  +  L++
Sbjct: 196 PTNRDPAFTRPRLRALMPTLAA 217
Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 1EC: 9
>sp|A8GY99|TILS_RICB8 tRNA(Ile)-lysidine synthase OS=Rickettsia bellii (strain OSU 85-389) GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|Q1RGN9|TILS_RICBR tRNA(Ile)-lysidine synthase OS=Rickettsia bellii (strain RML369-C) GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|B3CLY6|TILS_WOLPP tRNA(Ile)-lysidine synthase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|A5CFP2|TILS_ORITB tRNA(Ile)-lysidine synthase OS=Orientia tsutsugamushi (strain Boryong) GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|C0R4S1|TILS_WOLWR tRNA(Ile)-lysidine synthase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|B3CUJ5|TILS_ORITI tRNA(Ile)-lysidine synthase OS=Orientia tsutsugamushi (strain Ikeda) GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|Q73FR9|TILS_WOLPM tRNA(Ile)-lysidine synthase OS=Wolbachia pipientis wMel GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|A8GLX9|TILS_RICAH tRNA(Ile)-lysidine synthase OS=Rickettsia akari (strain Hartford) GN=tilS PE=3 SV=1 Back     alignment and function description
>sp|Q4UN67|TILS_RICFE tRNA(Ile)-lysidine synthase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=tilS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
359484359707 PREDICTED: uncharacterized protein LOC10 0.989 0.926 0.630 0.0
255546471679 raspberry3, putative [Ricinus communis] 0.957 0.933 0.592 0.0
356522718710 PREDICTED: uncharacterized protein LOC10 0.987 0.921 0.568 0.0
356529626705 PREDICTED: uncharacterized protein LOC10 0.898 0.843 0.603 0.0
357500613 842 tRNA(Ile)-lysidine synthase [Medicago tr 0.892 0.701 0.560 0.0
297831300664 hypothetical protein ARALYDRAFT_479968 [ 0.921 0.918 0.523 0.0
42572523660 protein raspberry 3 [Arabidopsis thalian 0.921 0.924 0.523 1e-179
19071761662 RASPBERRY3 [Arabidopsis thaliana] 0.921 0.921 0.520 1e-178
9294051614 unnamed protein product [Arabidopsis tha 0.799 0.861 0.539 1e-162
222622571693 hypothetical protein OsJ_06178 [Oryza sa 0.873 0.834 0.445 1e-143
>gi|359484359|ref|XP_002280934.2| PREDICTED: uncharacterized protein LOC100242283 [Vitis vinifera] gi|297738821|emb|CBI28066.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/682 (63%), Positives = 513/682 (75%), Gaps = 27/682 (3%)

Query: 1   MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY----LPSIRLFCKCSHAHA 56
           MA G +VS+Q+R TS      ++R+   S KCR     SQ      PS R FC+CSH   
Sbjct: 1   MASGFVVSSQARVTSNFAVASISRVL--STKCRNSLISSQLCSSRAPSNRFFCECSH--- 55

Query: 57  VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEA 116
           ++   D  KY+E FSRRMAMAGLKPHHRIALGVSGGPDSMALC+LTA WKT G N  GE+
Sbjct: 56  LQDPVDFIKYKEVFSRRMAMAGLKPHHRIALGVSGGPDSMALCILTADWKTNGLNTAGES 115

Query: 117 GEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
             FIDGLLAI VDHGLR ESK+EANIV HRVSDMGIRCEI +CDWLDG+PKQGHLQEAAR
Sbjct: 116 RGFIDGLLAIIVDHGLRAESKDEANIVRHRVSDMGIRCEIAQCDWLDGKPKQGHLQEAAR 175

Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
           +MRY++FQ VCIQHQIGVLL+AHHADDQ ELFILRLSR+SGVLGLAGMAF+SQ+FS+Y  
Sbjct: 176 EMRYQIFQNVCIQHQIGVLLVAHHADDQVELFILRLSRDSGVLGLAGMAFASQLFSTYTN 235

Query: 237 SCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 282
              +   N+SILL              IC+GGN++WVEDPTN++P F RNRIR+SL +L 
Sbjct: 236 YFDEASDNYSILLVRPLLEFSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLP 295

Query: 283 SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS 342
           SC+FK ELQAVISACR+TR+YV+ +CSNLINE V+VM QGYAVIDLEIL+PSKIEDI LS
Sbjct: 296 SCTFKYELQAVISACRKTRAYVDQICSNLINEVVSVMAQGYAVIDLEILHPSKIEDICLS 355

Query: 343 KFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCS 402
           KF+ALVLQFI QR RPVRGSTSKLLL YIRTFPCKTSLTAAGCYLC  P S+GTK LVC 
Sbjct: 356 KFIALVLQFISQRHRPVRGSTSKLLLDYIRTFPCKTSLTAAGCYLCAAPRSKGTKLLVCC 415

Query: 403 SIDGPLPSKLELFQIHSDGEQRHCV-TDVEQILEDAKSYSNHLIQDASDKLLLSMI-SDS 460
           S++ PLPSK+ELF  H     +H + ++VEQI+ D K+ S++L+ DASD   L +  S+S
Sbjct: 416 SVNSPLPSKMELFYRHCYETHKHYIPSEVEQIIVDGKANSDNLVPDASDVQFLDVASSES 475

Query: 461 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQL-MHAVECVGTYPSIPLQP 519
           +  EAKR N+LSESTY NIL LQ +E K FK  ++  SD  L MH V  V T  S+PLQP
Sbjct: 476 ILVEAKRRNILSESTYSNILSLQEDETKHFKSKTKTISDHDLKMHGVHTVSTSLSLPLQP 535

Query: 520 GQVCYFMNRFFVTWKLI-KENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRH 578
           GQ+CYFMNRF V+W L  K +G ++   E   +  L   S + +C  C+VG +MVAE+RH
Sbjct: 536 GQICYFMNRFLVSWNLSNKISGDKSPVEEASCNRDLAGKSLHHFCRHCMVGHDMVAEVRH 595

Query: 579 MIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSI 638
           M+++DWLYLAKLSK  +  N   ERV +     Q  EKT LC+D+ RLSA+RA+ SLKSI
Sbjct: 596 MVDADWLYLAKLSKHQNLENHEKERVILASAMEQISEKTILCSDFARLSAERALHSLKSI 655

Query: 639 PVAARRSLPVLVSSHGQLLSIP 660
           PVAARRSLPVL++SHG LLSIP
Sbjct: 656 PVAARRSLPVLINSHGLLLSIP 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546471|ref|XP_002514295.1| raspberry3, putative [Ricinus communis] gi|223546751|gb|EEF48249.1| raspberry3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356522718|ref|XP_003529993.1| PREDICTED: uncharacterized protein LOC100818654 [Glycine max] Back     alignment and taxonomy information
>gi|356529626|ref|XP_003533390.1| PREDICTED: uncharacterized protein LOC100777173 [Glycine max] Back     alignment and taxonomy information
>gi|357500613|ref|XP_003620595.1| tRNA(Ile)-lysidine synthase [Medicago truncatula] gi|357500787|ref|XP_003620682.1| tRNA(Ile)-lysidine synthase [Medicago truncatula] gi|355495610|gb|AES76813.1| tRNA(Ile)-lysidine synthase [Medicago truncatula] gi|355495697|gb|AES76900.1| tRNA(Ile)-lysidine synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297831300|ref|XP_002883532.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp. lyrata] gi|297329372|gb|EFH59791.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42572523|ref|NP_974357.1| protein raspberry 3 [Arabidopsis thaliana] gi|332643401|gb|AEE76922.1| protein raspberry 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|19071761|gb|AAL80000.1| RASPBERRY3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9294051|dbj|BAB02008.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222622571|gb|EEE56703.1| hypothetical protein OsJ_06178 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
TAIR|locus:2091732660 RSY3 "RASPBERRY 3" [Arabidopsi 0.817 0.819 0.561 3.6e-161
TIGR_CMR|APH_1180447 APH_1180 "tRNA(Ile)-lysidine s 0.475 0.704 0.278 5.3e-23
TIGR_CMR|ECH_1097434 ECH_1097 "tRNA(Ile)-lysidine s 0.427 0.652 0.262 6e-17
TIGR_CMR|SPO_3106419 SPO_3106 "tRNA(Ile)-lysidine s 0.361 0.570 0.299 1.5e-16
TIGR_CMR|BA_0062476 BA_0062 "tRNA(Ile)-lysidine sy 0.430 0.598 0.245 7.2e-14
CGD|CAL0005328483 orf19.2137 [Candida albicans ( 0.262 0.360 0.339 6.6e-13
POMBASE|SPAC12B10.08c456 SPAC12B10.08c "mitochondrial t 0.385 0.559 0.273 3.5e-11
DICTYBASE|DDB_G0293548665 DDB_G0293548 [Dictyostelium di 0.306 0.305 0.271 1.2e-10
TIGR_CMR|CHY_0213449 CHY_0213 "tRNA(Ile)-lysidine s 0.374 0.552 0.25 1.5e-10
TIGR_CMR|VC_2242440 VC_2242 "tRNA(Ile)-lysidine sy 0.333 0.502 0.280 2.4e-10
TAIR|locus:2091732 RSY3 "RASPBERRY 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1496 (531.7 bits), Expect = 3.6e-161, Sum P(2) = 3.6e-161
 Identities = 327/582 (56%), Positives = 395/582 (67%)

Query:    32 CRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSG 91
             C  P        S RLFC  +HA  V    D T+Y+E F++RM MAGLKPH+RIALGVSG
Sbjct:    37 CSYPLQSRHPKFSQRLFC--NHA-CVPETVDETRYKELFNKRMDMAGLKPHNRIALGVSG 93

Query:    92 GPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG 151
             GPDSMALCVLTA WKT G +   +   FIDGL+AI VDHGLR+ESK+EA +V  RVS MG
Sbjct:    94 GPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKDEAELVCSRVSQMG 153

Query:   152 IRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211
             IRCEI  CDW+DGRPK GHLQEAAR+MRY +   VC + QI VLLIAHHADDQAELFILR
Sbjct:   154 IRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQAELFILR 213

Query:   212 LSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL--------------ICQGGNRD 257
             LSR+SGVLGLAG AF+S+IFS         +KN SI L              ICQ G +D
Sbjct:   214 LSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYKICQWGRQD 273

Query:   258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
             WVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRTRS+V+ VC++LI++ VT
Sbjct:   274 WVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCTDLIHQTVT 333

Query:   318 VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCK 377
             V D+GYA++DLE LNPS ++DI LSK+L  VLQFI QRQRP+RG+TSKLLL+YIR  PC+
Sbjct:   334 VTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLNYIRAIPCR 393

Query:   378 TSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDA 437
             TSLTAAGCYL P PGS+GTK +V  S+D PLPSK EL  I S  E      D+ QI+ DA
Sbjct:   394 TSLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNI-SFNETPS--DDLGQIIADA 450

Query:   438 KSYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEV 496
             KS+S+H+   +  ++  L + S+SV ++A+  N+LSESTY  I LLQR+E KRF   +E 
Sbjct:   451 KSFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETKRFLTKTEE 510

Query:   497 TSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGE 556
              S  +L H      +   + L  GQ  YFMNRF + W L     + A             
Sbjct:   511 KS-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA------------- 556

Query:   557 DSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGN 598
             D     C +C V      E+RHM+E DWLYLA+LSK  S+ N
Sbjct:   557 D-----CRNCPVSTATSMEVRHMVEPDWLYLAELSK-CSTSN 592
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0008033 "tRNA processing" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;ISS
GO:0016879 "ligase activity, forming carbon-nitrogen bonds" evidence=IEA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0010098 "suspensor development" evidence=IMP
TIGR_CMR|APH_1180 APH_1180 "tRNA(Ile)-lysidine synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_1097 ECH_1097 "tRNA(Ile)-lysidine synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3106 SPO_3106 "tRNA(Ile)-lysidine synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0062 BA_0062 "tRNA(Ile)-lysidine synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
CGD|CAL0005328 orf19.2137 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPAC12B10.08c SPAC12B10.08c "mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293548 DDB_G0293548 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0213 CHY_0213 "tRNA(Ile)-lysidine synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2242 VC_2242 "tRNA(Ile)-lysidine synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.3__2669__AT3G24560.2
annotation not avaliable (664 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
pfam01171182 pfam01171, ATP_bind_3, PP-loop family 1e-55
cd01992185 cd01992, PP-ATPase, N-terminal domain of predicted 3e-52
TIGR02432189 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine syn 4e-44
COG0037298 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [C 2e-27
PRK10660436 PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Pro 4e-13
cd01993185 cd01993, Alpha_ANH_like_II, This is a subfamily of 1e-05
>gnl|CDD|216343 pfam01171, ATP_bind_3, PP-loop family Back     alignment and domain information 
 Score =  187 bits (476), Expect = 1e-55
 Identities = 75/198 (37%), Positives = 100/198 (50%), Gaps = 24/198 (12%)

Query: 84  RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
           +I + VSGGPDSMAL  L    K           +F   L A  VDHGLREES  EA  V
Sbjct: 1   KILVAVSGGPDSMALLYLLKKLKP----------KFGIDLTAAHVDHGLREESDREAQFV 50

Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
                 + I  E++R D    +    +L+EAAR+ RY  F+++  ++   VLL AHHADD
Sbjct: 51  KELCRQLNIPLEVLRVDV--AKKSGLNLEEAAREARYDFFEEIAKKNGAEVLLTAHHADD 108

Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSS------YAYSCHDDLKNHSILLICQGGNRD 257
           QAE F++RL R SG+ GLAG+A    +            +     K+  I    +     
Sbjct: 109 QAETFLMRLLRGSGLAGLAGIAPVRPLAGGRIVRPLLKVT-----KSE-IEEYLKEHGIP 162

Query: 258 WVEDPTNRSPLFVRNRIR 275
           WVED +N    + RNRIR
Sbjct: 163 WVEDESNADLRYTRNRIR 180

This family of proteins belongs to the PP-loop superfamily. Length = 182
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>gnl|CDD|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>gnl|CDD|182626 PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 662
PRK10660436 tilS tRNA(Ile)-lysidine synthetase; Provisional 100.0
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 100.0
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 100.0
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 100.0
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 100.0
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 100.0
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 99.97
PRK00074511 guaA GMP synthase; Reviewed 99.91
PRK00143346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 99.9
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 99.88
cd01998349 tRNA_Me_trans tRNA methyl transferase. This family 99.86
cd01997295 GMP_synthase_C The C-terminal domain of GMP synthe 99.84
PRK14665360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 99.83
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 99.83
TIGR00884311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 99.82
PRK00919307 GMP synthase subunit B; Validated 99.8
PRK08349198 hypothetical protein; Validated 99.78
TIGR00420352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 99.78
cd01712177 ThiI ThiI is required for thiazole synthesis in th 99.77
cd01713173 PAPS_reductase This domain is found in phosphoaden 99.76
PRK14664362 tRNA-specific 2-thiouridylase MnmA; Provisional 99.75
PRK13820394 argininosuccinate synthase; Provisional 99.74
PRK14561194 hypothetical protein; Provisional 99.72
PLN02347536 GMP synthetase 99.69
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 99.67
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 99.66
COG1606269 ATP-utilizing enzymes of the PP-loop superfamily [ 99.65
PF03054356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 99.65
cd01995169 ExsB ExsB is a transcription regulator related pro 99.6
TIGR00552250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 99.59
TIGR00364201 exsB protein. This protein family is represented b 99.59
PRK08384381 thiamine biosynthesis protein ThiI; Provisional 99.58
TIGR00032394 argG argininosuccinate synthase. argG in bacteria, 99.57
COG0482356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 99.56
PRK00509399 argininosuccinate synthase; Provisional 99.53
COG0519315 GuaA GMP synthase, PP-ATPase domain/subunit [Nucle 99.52
KOG2840347 consensus Uncharacterized conserved protein with s 99.52
PRK01565394 thiamine biosynthesis protein ThiI; Provisional 99.52
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 99.45
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 99.45
PLN00200404 argininosuccinate synthase; Provisional 99.43
PRK04527400 argininosuccinate synthase; Provisional 99.43
cd01999385 Argininosuccinate_Synthase Argininosuccinate synth 99.39
PRK01269482 tRNA s(4)U8 sulfurtransferase; Provisional 99.38
PRK11106231 queuosine biosynthesis protein QueC; Provisional 99.34
PRK13980265 NAD synthetase; Provisional 99.34
PRK08576438 hypothetical protein; Provisional 99.33
cd00553248 NAD_synthase NAD+ synthase is a homodimer, which c 99.31
TIGR03573343 WbuX N-acetyl sugar amidotransferase. This enzyme 99.31
KOG2805377 consensus tRNA (5-methylaminomethyl-2-thiouridylat 99.23
TIGR02039294 CysD sulfate adenylyltransferase, small subunit. I 99.22
PF06508209 QueC: Queuosine biosynthesis protein QueC; InterPr 99.18
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 99.18
PRK02090241 phosphoadenosine phosphosulfate reductase; Provisi 99.14
PTZ00323294 NAD+ synthase; Provisional 99.05
COG0603222 Predicted PP-loop superfamily ATPase [General func 99.01
KOG1622552 consensus GMP synthase [Nucleotide transport and m 99.0
PF02568197 ThiI: Thiamine biosynthesis protein (ThiI); InterP 98.91
PRK12563312 sulfate adenylyltransferase subunit 2; Provisional 98.9
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 98.85
PF01507174 PAPS_reduct: Phosphoadenosine phosphosulfate reduc 98.75
cd01991269 Asn_Synthase_B_C The C-terminal domain of Asparagi 98.67
PF02540242 NAD_synthase: NAD synthase; InterPro: IPR022310 NA 98.64
PRK02628679 nadE NAD synthetase; Reviewed 98.59
PRK05370447 argininosuccinate synthase; Validated 98.56
TIGR03679218 arCOG00187 arCOG00187 universal archaeal metal-bin 98.53
TIGR00434212 cysH phosophoadenylyl-sulfate reductase (thioredox 98.48
PRK08557417 hypothetical protein; Provisional 98.47
COG0137403 ArgG Argininosuccinate synthase [Amino acid transp 98.46
PRK13794479 hypothetical protein; Provisional 98.46
PF00764388 Arginosuc_synth: Arginosuccinate synthase; InterPr 98.45
PRK13795636 hypothetical protein; Provisional 98.44
PF00733255 Asn_synthase: Asparagine synthase; InterPro: IPR00 98.42
PRK00876326 nadE NAD synthetase; Reviewed 98.32
TIGR02057226 PAPS_reductase phosphoadenosine phosphosulfate red 98.31
KOG2594396 consensus Uncharacterized conserved protein [Funct 98.29
TIGR01536467 asn_synth_AEB asparagine synthase (glutamine-hydro 98.28
COG0175261 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr 98.07
PRK13981540 NAD synthetase; Provisional 98.05
COG0301383 ThiI Thiamine biosynthesis ATP pyrophosphatase [Co 97.81
COG1365255 Predicted ATPase (PP-loop superfamily) [General fu 97.75
PRK06850507 hypothetical protein; Provisional 97.73
PRK00768268 nadE NAD synthetase; Reviewed 97.73
TIGR03183447 DNA_S_dndC putative sulfurtransferase DndC. Member 97.6
COG2117198 Predicted subunit of tRNA(5-methylaminomethyl-2-th 97.6
COG0171268 NadE NAD synthase [Coenzyme metabolism] 97.57
PLN02549578 asparagine synthase (glutamine-hydrolyzing) 97.47
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 97.45
KOG1706412 consensus Argininosuccinate synthase [Amino acid t 97.32
TIGR03108628 eps_aminotran_1 exosortase 1 system-associated ami 97.19
PTZ00077586 asparagine synthetase-like protein; Provisional 97.17
PRK09431554 asnB asparagine synthetase B; Provisional 97.04
TIGR03104589 trio_amidotrans asparagine synthase family amidotr 97.03
TIGR02055191 APS_reductase thioredoxin-dependent adenylylsulfat 96.62
COG0367542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 96.61
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 96.6
TIGR00424463 APS_reduc 5'-adenylylsulfate reductase, thioredoxi 96.25
COG3969407 Predicted phosphoadenosine phosphosulfate sulfotra 95.88
TIGR00269104 conserved hypothetical protein TIGR00269. 95.8
PF01902218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 95.52
PLN02309457 5'-adenylylsulfate reductase 95.44
cd01987124 USP_OKCHK USP domain is located between the N-term 95.06
PLN02339700 NAD+ synthase (glutamine-hydrolysing) 94.89
COG2102223 Predicted ATPases of PP-loop superfamily [General 93.96
KOG0571543 consensus Asparagine synthase (glutamine-hydrolyzi 92.74
PRK10490895 sensor protein KdpD; Provisional 92.65
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 91.73
cd00293130 USP_Like Usp: Universal stress protein family. The 91.57
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 91.53
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 87.1
COG0788287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 86.67
PF02677176 DUF208: Uncharacterized BCR, COG1636; InterPro: IP 84.08
TIGR00655280 PurU formyltetrahydrofolate deformylase. This mode 83.47
KOG0573520 consensus Asparagine synthase [Amino acid transpor 82.65
COG1636204 Uncharacterized protein conserved in bacteria [Fun 82.43
PRK09982142 universal stress protein UspD; Provisional 81.23
PRK10116142 universal stress protein UspC; Provisional 80.61
PRK15118144 universal stress global response regulator UspA; P 80.58
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-44  Score=396.68  Aligned_cols=283  Identities=22%  Similarity=0.273  Sum_probs=220.5

Q ss_pred             CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEE
Q 006087           79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR  158 (662)
Q Consensus        79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~  158 (662)
                      +.++++|+||||||+|||+|++++..+....       .|  +++.|+|||||+|++|++++++|+++|+++|||+++.+
T Consensus        12 l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-------~~--~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~   82 (436)
T PRK10660         12 LLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-------PG--VTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER   82 (436)
T ss_pred             cCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-------CC--CeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence            6778999999999999999999998765221       12  37999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc-----ccccc
Q 006087          159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-----QIFSS  233 (662)
Q Consensus       159 ~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~-----~i~rP  233 (662)
                      +++.   ....++|++||..||.+|.+.+.+.  ++|+||||+|||+|||||||.||+|+.||+||++..     .++||
T Consensus        83 ~~~~---~~~~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRP  157 (436)
T PRK10660         83 VQLD---QRGLGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRP  157 (436)
T ss_pred             Eecc---CCCCCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchHHHHHHHHHHHHcCCChhhccccceecccCCCcEeCC
Confidence            7653   1235799999999999999999874  689999999999999999999999999999998742     36788


Q ss_pred             cccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006087          234 YAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISACRRTRSYVEHVCSN  310 (662)
Q Consensus       234 lL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~~l~~~~~~Le~~~~~  310 (662)
                      ++.+     +|+||..||+++|++|++||||+++.|.||+|||.+.|..   +|.+...+.++++.++++.+++++.++.
T Consensus       158 LL~~-----~k~ei~~ya~~~~l~~~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~~~~~~l~~~~~~  232 (436)
T PRK10660        158 LLAR-----SREELEQYAQAHGLRWIEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQEQLLDELLAE  232 (436)
T ss_pred             CccC-----CHHHHHHHHHHcCCCEEECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8865     5789999999999999999999999999999999988876   6899999999999999999999998877


Q ss_pred             HHHhhhhhcCCceeEEeccccCCCChHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHHc--CCCCCceeecceEEe
Q 006087          311 LINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRT--FPCKTSLTAAGCYLC  388 (662)
Q Consensus       311 ll~~~v~~~~~g~~vid~~~l~~~~i~~~~~~r~L~~~l~~is~~~~~~R~~~l~~Ll~~lr~--~~~~~~~Tl~Gc~i~  388 (662)
                      .+......  .+.  +++..|....  ....++++...+.-.  ....++...+..+++.+..  .+.+...+.+|+.+.
T Consensus       233 ~~~~~~~~--~~~--l~~~~l~~l~--~~~~~~ll~~~l~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  304 (436)
T PRK10660        233 DLAHLQTP--DGT--LSIDPLLAMS--DARRAAILRRWLAGQ--GAPMPSRDQLQRIWQEVALAREDAEPCLRLGAFEIR  304 (436)
T ss_pred             HHHHhhcc--CCc--CcHHHHhhCC--HHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHhhccccCCeEEECCEEEE
Confidence            76654322  221  4444443322  222334444433321  1233444455555555422  123345677888864

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK04527 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>PRK11106 queuosine biosynthesis protein QueC; Provisional Back     alignment and domain information
>PRK13980 NAD synthetase; Provisional Back     alignment and domain information
>PRK08576 hypothetical protein; Provisional Back     alignment and domain information
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>TIGR03573 WbuX N-acetyl sugar amidotransferase Back     alignment and domain information
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02039 CysD sulfate adenylyltransferase, small subunit Back     alignment and domain information
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional Back     alignment and domain information
>PTZ00323 NAD+ synthase; Provisional Back     alignment and domain information
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] Back     alignment and domain information
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell Back     alignment and domain information
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B Back     alignment and domain information
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK05370 argininosuccinate synthase; Validated Back     alignment and domain information
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) Back     alignment and domain information
>PRK08557 hypothetical protein; Provisional Back     alignment and domain information
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13794 hypothetical protein; Provisional Back     alignment and domain information
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 Back     alignment and domain information
>PRK13795 hypothetical protein; Provisional Back     alignment and domain information
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) Back     alignment and domain information
>PRK00876 nadE NAD synthetase; Reviewed Back     alignment and domain information
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent Back     alignment and domain information
>KOG2594 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] Back     alignment and domain information
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] Back     alignment and domain information
>PRK06850 hypothetical protein; Provisional Back     alignment and domain information
>PRK00768 nadE NAD synthetase; Reviewed Back     alignment and domain information
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC Back     alignment and domain information
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0171 NadE NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent Back     alignment and domain information
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only] Back     alignment and domain information
>TIGR00269 conserved hypothetical protein TIGR00269 Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>PLN02309 5'-adenylylsulfate reductase Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
3a2k_A464 Crystal Structure Of Tils Complexed With Trna Lengt 7e-16
1wy5_A317 Crystal Structure Of Isoluecyl-Trna Lysidine Synthe 7e-07
1ni5_A433 Structure Of The Mesj Pp-Atpase From Escherichia Co 7e-06
>pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna Length = 464 Back     alignment and structure 
Iteration: 1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 85  IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
           + +GVSGGPDS+AL      L   WK                ++A  VDH  R  ES+EE
Sbjct: 21  VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
              V     +  I CE  + D    +   G   QEAAR  RYR F ++  +HQ G + + 
Sbjct: 67  MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
           HH DDQ E  ++RL R S   G AG+         Y       +    I   C+      
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSP 186
Query: 259 VEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
             DP+N    + RNR R  +  L    +       Q           ++E + ++ +N+ 
Sbjct: 187 RCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEELAADALNKV 246
Query: 316 V 316
           +
Sbjct: 247 M 247
>pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase Length = 317 Back     alignment and structure
>pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli Length = 433 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 2e-42
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 2e-41
1ni5_A433 Putative cell cycle protein MESJ; structural genom 3e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317 Back     alignment and structure
 Score =  155 bits (393), Expect = 2e-42
 Identities = 46/212 (21%), Positives = 75/212 (35%), Gaps = 42/212 (19%)

Query: 79  LKPHHRIALGVSGGPDSMAL-CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
                R+ +  SGG DS+ L  VL          +          +     +H LRE ++
Sbjct: 21  FSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKE----------VALAHFNHMLRESAE 70

Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLL 196
            +         +  ++  + + D      +    L+EA R +RY+  +++        + 
Sbjct: 71  RDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIA 130

Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFS-------------SQIFSSYAYSCHDDLK 243
            AHH +D  E  +L  +R +G+ GL G                 S+I     Y      K
Sbjct: 131 TAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEI---EEY-----AK 182

Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
              +          WVED TN      RNRIR
Sbjct: 183 FKGL---------RWVEDETNYEVSIPRNRIR 205
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464 Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Length = 433 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 100.0
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 100.0
1ni5_A433 Putative cell cycle protein MESJ; structural genom 100.0
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 99.92
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 99.9
2der_A380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 99.88
2hma_A376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 99.88
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 99.85
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 99.84
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 99.83
2vxo_A697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 99.83
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 99.82
3uow_A556 GMP synthetase; structural genomics consortium, SG 99.8
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 99.77
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 99.76
2c5s_A413 THII, probable thiamine biosynthesis protein THII; 99.75
2e18_A257 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.71
1kor_A400 Argininosuccinate synthetase; ligase, riken struct 99.71
2nz2_A413 Argininosuccinate synthase; amino-acid biosynthesi 99.71
1k92_A455 Argininosuccinate synthase, argininosuccinate SY; 99.7
3p52_A249 NH(3)-dependent NAD(+) synthetase; structural geno 99.67
1xng_A268 NH(3)-dependent NAD(+) synthetase; amidotransferas 99.66
1zun_A325 Sulfate adenylyltransferase subunit 2; beta barrel 99.63
2o8v_A252 Phosphoadenosine phosphosulfate reductase; disulfi 99.62
3fiu_A249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 99.61
2oq2_A261 Phosphoadenosine phosphosulfate reductase; sulfate 99.47
1vl2_A421 Argininosuccinate synthase; TM1780, structural gen 99.46
2goy_A275 Adenosine phosphosulfate reductase; iron sulfur cl 99.28
1wxi_A275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 99.19
1vbk_A307 Hypothetical protein PH1313; structural genomics, 99.17
2wsi_A306 FAD synthetase; transferase, nucleotidyltransferas 99.16
1kqp_A271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 99.16
3q4g_A279 NH(3)-dependent NAD(+) synthetase; structural geno 99.08
3n05_A590 NH(3)-dependent NAD(+) synthetase; ligase, structu 98.96
3dpi_A285 NAD+ synthetase; ssgcid, decode, structural genomi 98.92
3ilv_A634 Glutamine-dependent NAD(+) synthetase; protein str 98.4
1ct9_A553 Asparagine synthetase B; amidotransferase, substra 98.23
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 98.2
3sdb_A680 Glutamine-dependent NAD(+) synthetase; glutamine-a 98.14
1jgt_A513 Beta-lactam synthetase; asparagine synthetase, cla 98.11
1q15_A503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 98.09
3fwk_A308 FMN adenylyltransferase; FAD biosynthesis, alpha/b 97.94
4f4h_A565 Glutamine dependent NAD+ synthetase; structural ge 96.93
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 91.62
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 90.9
3dlo_A155 Universal stress protein; unknown function, struct 90.25
3loq_A294 Universal stress protein; structural genomics, PSI 89.65
3fdx_A143 Putative filament protein / universal stress PROT; 89.4
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 89.21
3tnj_A150 Universal stress protein (USP); structural genomic 88.82
3s3t_A146 Nucleotide-binding protein, universal stress PROT 88.21
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 88.06
2z08_A137 Universal stress protein family; uncharacterized c 86.59
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 85.12
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 85.08
3fg9_A156 Protein of universal stress protein USPA family; A 83.29
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 80.02
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
Probab=100.00  E-value=6.2e-45  Score=401.00  Aligned_cols=298  Identities=23%  Similarity=0.289  Sum_probs=240.1

Q ss_pred             HHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC-CCcHHHHHHHHHH
Q 006087           69 AFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR  146 (662)
Q Consensus        69 ~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR-~eS~~Ea~~V~~~  146 (662)
                      +|.+.+..+. +.++++|+||||||+|||||+++++++....        |  +++.|+|||||+| ++|++|+++|+++
T Consensus         4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~--------~--~~v~avhvdhglrg~~s~~~~~~v~~~   73 (464)
T 3a2k_A            4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW--------K--LQVIAAHVDHMFRGRESEEEMEFVKRF   73 (464)
T ss_dssp             HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT--------T--CBCEEEEEECTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc--------C--CeEEEEEEECCCCccccHHHHHHHHHH
Confidence            4666777764 8889999999999999999999998875431        2  2688999999999 7788999999999


Q ss_pred             HHHcCCeEEEEEcccccC-CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccc
Q 006087          147 VSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA  225 (662)
Q Consensus       147 c~kLGIp~~i~~~~~~~~-~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~  225 (662)
                      |+++|||+++.+++.... .....++|++||.+||++|.++|+++|+++|+||||+|||+||+||++.||+|+.||+||+
T Consensus        74 ~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~  153 (464)
T 3a2k_A           74 CVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIP  153 (464)
T ss_dssp             HHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSC
T ss_pred             HHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCC
Confidence            999999999998865321 1223478999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-----ccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHHHH
Q 006087          226 FSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISAC  297 (662)
Q Consensus       226 ~~~-----~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~~l  297 (662)
                      +.+     .++||++.+     ++.||+.||+++|++|++||||++..|.||+||+.+.|..   +|.+..++.++++.+
T Consensus       154 ~~~~~~~~~iiRPLl~~-----~k~eI~~ya~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~a~~~  228 (464)
T 3a2k_A          154 VKRPFHGGYLIRPFLAV-----SRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMM  228 (464)
T ss_dssp             SEEECSSSEEECGGGGS-----CHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             ccccCCCCEEECCCccC-----cHHHHHHHHHHcCCCeEECCCCCCccchHHHHHHHHHHHHHHHCchHHHHHHHHHHHH
Confidence            864     477888754     5789999999999999999999999999999999987765   789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCceeEEeccccCCCChHHHHHHHHHHHHHHHhhCC-cccccCchHHHHHHHHHcCCC
Q 006087          298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQR-QRPVRGSTSKLLLHYIRTFPC  376 (662)
Q Consensus       298 ~~~~~~Le~~~~~ll~~~v~~~~~g~~vid~~~l~~~~i~~~~~~r~L~~~l~~is~~-~~~~R~~~l~~Ll~~lr~~~~  376 (662)
                      +++.+++++.++..+.+.+...+ +...++...|...  .....++++...+...++. ...+....+..+++.+.....
T Consensus       229 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (464)
T 3a2k_A          229 AEDEQFLEELAADALNKVMEKQH-RDAALSIGPFLEL--PRPLQRRVLQLLLLRLYGGVPPTLTSVHIGHILMLCERGRP  305 (464)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSS-SSCEECHHHHHHS--CHHHHHHHHHHHHHHTTSCCTTCCHHHHHHHHHHHHHCSCS
T ss_pred             HHHHHHHHHHHHHHHHHhhhccC-CcEEEEHHHHhcC--CHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcCCC
Confidence            99999999998888776642222 3346776666432  2234556777777766543 345556667777777765333


Q ss_pred             CCceeecc
Q 006087          377 KTSLTAAG  384 (662)
Q Consensus       377 ~~~~Tl~G  384 (662)
                      +..+.++|
T Consensus       306 ~~~~~l~~  313 (464)
T 3a2k_A          306 SGMIDLPK  313 (464)
T ss_dssp             EEEEECST
T ss_pred             CcEEEeCC
Confidence            33455643
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 662
d1wy5a1216 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aqui 5e-16
d1ni5a1227 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, T 2e-14
d2c5sa1218 c.26.2.6 (A:174-391) Thiamine biosynthesis protein 4e-05
d1vl2a1168 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N 9e-05
d1j20a1165 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N 0.003
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

 Score = 75.4 bits (184), Expect = 5e-16
 Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 16/202 (7%)

Query: 79  LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
                R+ +  SGG DS+ L  +    K     +          +     +H LRE ++ 
Sbjct: 21  FSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKE---------VALAHFNHMLRESAER 71

Query: 139 EANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
           +         +  ++  + + D     +  +  L+EA R +RY+  +++        +  
Sbjct: 72  DEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIAT 131

Query: 198 AHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
           AHH +D  E  +L  +R +G+ GL G +     I     Y    +++        +    
Sbjct: 132 AHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEE-----YAKFKGL 186

Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
            WVED TN      RNRIR  +
Sbjct: 187 RWVEDETNYEVSIPRNRIRHRV 208
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 227 Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Length = 218 Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 168 Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 165 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 100.0
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 100.0
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 99.88
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 99.61
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 99.59
d1gpma1197 GMP synthetase, central domain {Escherichia coli [ 99.38
d1j20a1165 Argininosuccinate synthetase, N-terminal domain {T 99.33
d1zuna1211 Sulfate adenylyltransferase subunit 2, CysD {Pseud 99.24
d1xnga1255 NH3-dependent NAD+-synthetase {Helicobacter pylori 98.99
d2pg3a1230 Queuosine biosynthesis protein QueC {Erwinia carot 98.88
d1sura_215 Phosphoadenylyl sulphate (PAPS) reductase {Escheri 98.8
d1wxia1274 NH3-dependent NAD+-synthetase {Escherichia coli [T 98.11
d1jgta1299 beta-Lactam synthetase {Streptomyces clavuligerus 98.0
d1ct9a1324 Asparagine synthetase B, C-terminal domain {Escher 97.68
d1q15a1296 beta-Lactam synthetase {Pectobacterium carotovorum 97.66
d1kqpa_271 NH3-dependent NAD+-synthetase {Bacillus subtilis [ 97.64
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 97.6
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 97.33
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 91.48
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 91.41
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 90.55
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=9e-45  Score=359.88  Aligned_cols=204  Identities=22%  Similarity=0.262  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHHc-CCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087           64 TKYREAFSRRMAMA-GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI  142 (662)
Q Consensus        64 ~~~~~~f~~~i~~~-~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~  142 (662)
                      .++..++.+.+..+ +++++++|+||||||+|||+||++|+.+....        ++ ..+.++|||||+|++|..|+++
T Consensus         5 ~~~~~k~~~~~~~~~l~~~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~--------~~-~~i~~~~vdh~~r~~s~~~~~~   75 (216)
T d1wy5a1           5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYF--------SL-KEVALAHFNHMLRESAERDEEF   75 (216)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTT--------TC-SEEEEEEEECCSSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCCeEEEEeCCcHHHHHHHHHHHHHHHhc--------CC-CcEEEEEeecccccchhhhhhH
Confidence            34556666666655 58999999999999999999999998764321        11 1588999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEEcccccC-CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCc
Q 006087          143 VSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL  221 (662)
Q Consensus       143 V~~~c~kLGIp~~i~~~~~~~~-~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GL  221 (662)
                      |+++|+++||++++...++... .....++|..||..||++|.++|+++|+++|+||||+||++||+|||+.||+|+.||
T Consensus        76 ~~~~~~~l~i~~~i~~~~~~~~~~~~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~dD~~Et~l~~l~rg~~~~~l  155 (216)
T d1wy5a1          76 CKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLDGL  155 (216)
T ss_dssp             HHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhhhhhhhhhccchhhhccCCccchHHHHHHHHHHHhhhhccccccceeEeeeeccchHHHHHHHhhcCCccccc
Confidence            9999999999999988765321 122357999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc-cccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhc
Q 006087          222 AGMAFSSQ-IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL  281 (662)
Q Consensus       222 aGM~~~~~-i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l  281 (662)
                      .||.+... ++||++.+     ++.||+.||+++|+||++||||++..|.||+||+.|.|.
T Consensus       156 ~~~~~~~~~i~RPLl~~-----~k~eI~~~a~~~~l~~~~D~sN~~~~~~Rn~iR~~l~p~  211 (216)
T d1wy5a1         156 IGFLPKEEVIRRPLYYV-----KRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPE  211 (216)
T ss_dssp             HCSCSEETTEECTTTTC-----CHHHHHHHHHHTTCCCCCCGGGGTCCHHHHHHHHTHHHH
T ss_pred             cCCCcccceecchhhcC-----CHHHHHHHHHHcCCcEEECcCCCCCcccHHHHHHHHHHH
Confidence            99987654 56888764     578999999999999999999999999999999988774
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure