Citrus Sinensis ID: 006140

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66

MPEMSAFLEMEDLQEELLTSPSHTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCYHDYTLPVTAQFSPPSSPSQIPSRSAWDVLCQYVQGKGNLVYQWGTEVFVPRLPFCHPYASQVRASTFSTDEGEKSRGTGTYIPERTRPPPIEINRPVRARNPESLNHVPVSKLRRKIDKAERLPSRDNLESGCSLNVENGCSLNMENSCSLILSLEEFPLLPVTKNLPPSATNQQFDQSTDKSTQVDDVSSPVVTTIMFGTYEHSLKPSVLPSPSARMKVSGASTTLDTEPGLTIMERQKQQEPSGSRDELYGIF

cccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEEccEEEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccEEccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccc

cccccHHEEccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHcccccccccccHHHcHHHcccccccccccEEEHHHHHHccccccccccccHccccccccccEEEEEccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccEccccccccccccHHHHHHHHHHHccccccccHHHccc

MPEMSAFLEMEDLQEelltspshtsssssyssppnlypfsIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGyygievfpfgsvplktylpdgdidltvlghqNVEEDLARFVCKIlenedqdsvfeikdvqyvpaQVKIVKCsvqnipvdisfnQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDyyntfdwdnycisingpvaisslPEIVAETVendgdelllspeFLKKCREIYSVpitalentghefaikhlnivdplkdnnnlgrsvskgnfHRIRCALSYGAQRLGEiltlpghclgmgLEKFFINTLErngkglrpdvqvpihafgsgkseaadlsgdydsyyngllygqcyhdytlpvtaqfsppsspsqipsrsAWDVLCQYVqgkgnlvyqwgtevfvprlpfchpyasqvrastfstdegeksrgtgtyipertrpppieinrpvrarnpeslnhvpvsklrrkidkaerlpsrdnlesgcslnvengcslnmeNSCSLILsleefpllpvtknlppsatnqqfdqstdkstqvddvsspvVTTIMFGtyehslkpsvlpspsarmkvsgasttldtepgltIMERQkqqepsgsrdelygif

MPEMSAFLEMEDLQEELLTSPSHTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTiqpaivsekkrkEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCYHDYTLPVTAQFSPPSSPSQIPSRSAWDVLCQYVQGKGNLVYQWGTEVFVPRLPFCHPYASQVrastfstdegeksrgtgtyipertrpppieinrpvrarnpeslnhvpvsklrrkidkaerlpsrdnlesgcSLNVENGCSLNMENSCSLILSLEEFPLLPVTKNLPPSATNQqfdqstdkstqvddvssPVVTTIMFGTYEHslkpsvlpspsarMKVSGasttldtepgltimerqkqqepsgsrdelygif

MPEMSAFLEMEDLQEELLTspshtsssssyssppNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCYHDYTLPVTAQFsppsspsqipsrsAWDVLCQYVQGKGNLVYQWGTEVFVPRLPFCHPYASQVRASTFSTDEGEKSRGTGTYipertrpppieinrpVRARNPESLNHVPVSKLRRKIDKAERLPSRDNLESGCSLNVENGCSLNMENSCSLILSLEEFPLLPVTKNLPPSATNQQFDQSTDKSTQVDDVSSPVVTTIMFGTYEHSLKPSVLPSPSARMKVSGASTTLDTEPGLTIMERQKQQEPSGSRDELYGIF

***********************************LYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAFGSG**EAADLSGDYDSYYNGLLYGQCYHDYTLPVTAQ**************AWDVLCQYVQGKGNLVYQWGTEVFVPRLPFCHPYASQV************************************************************************LNVENGCSLNMENSCSLILSLEEFPLLPV*****************************VVTTIMFGT******************************************************

*****A************************************AELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITA****GHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLR***********************************************************************************************************************************************************************************************************************************************************************************************LYGIF

MPEMSAFLEMEDLQEE*****************PNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCYHDYTLPVTAQ************RSAWDVLCQYVQGKGNLVYQWGTEVFVPRLPFCHPYASQV**************GTGTYIPERTRPPPIEINRPVRARNPESLNHVPVSKLRRKIDKAERLPSRDNLESGCSLNVENGCSLNMENSCSLILSLEEFPLLPVTKNLPPSA*****************VSSPVVTTIMFGTYEHSLKPSVLPS*************LDTEPGLTIME************ELYGIF

**********E*LQEEL****************PNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAFGS*****ADLSGDYDSYYNGLLYGQCYHDYTLPVTAQ******************LCQYVQG*GNLVYQWGTEVFVPRLPFCHPYASQVRASTFST***********************************************************************************************************************************************************************************D*****F

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		659	2.2.26 [Sep-21-2011]
Q8NDF8		572	PAP-associated domain-con	no	no	0.171	0.197	0.340	0.0002
G5EFL0		845	Poly(A) RNA polymerase gl	yes	no	0.418	0.326	0.253	0.0006
Q68ED3		633	PAP-associated domain-con	no	no	0.171	0.178	0.333	0.0008
Q6PB75		542	DNA polymerase sigma OS=M	no	no	0.239	0.291	0.276	0.0009

>sp\|Q8NDF8\|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2	Back alignment and function desciption

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 19/132 (14%)

Query: 51  ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLT 109
           E I +    + P    EK R EV+N I+ +I   +   +V  FGS     YLP  DIDL 
Sbjct: 122 EEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLV 181

Query: 110 VLGH------QNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKC--SVQNIPV 161
           V G         +EE L +         D+DSV ++ D   VP    I+K   S   + V
Sbjct: 182 VFGKWENLPLWTLEEALRKHKV-----ADEDSV-KVLDKATVP----IIKLTDSFTEVKV 231

Query: 162 DISFNQMAGLSA 173
           DISFN   G+ A
Sbjct: 232 DISFNVQNGVRA 243

Plays a role in replication-dependent histone mRNA degradation. May be involved in the terminal uridylation of mature histone mRNAs before their degradation is initiated. DNA polymerase, probably involved in DNA repair. May play a role in sister chromatid cohesion.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: -

>sp\|G5EFL0\|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4 PE=1 SV=1	Back alignment and function description

>sp\|Q68ED3\|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5 PE=2 SV=2	Back alignment and function description

>sp\|Q6PB75\|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		659
255564100		644	nucleic acid binding protein, putative [	0.910	0.931	0.579	0.0
255559667		655	nucleic acid binding protein, putative [	0.925	0.931	0.577	0.0
224146203		490	predicted protein [Populus trichocarpa]	0.678	0.912	0.650	1e-171
42565972		603	PAP/OAS1 substrate-binding domain-contai	0.748	0.817	0.507	1e-142
356570171		644	PREDICTED: uncharacterized protein LOC10	0.792	0.810	0.494	1e-142
356561857		684	PREDICTED: uncharacterized protein LOC10	0.743	0.716	0.514	1e-140
7572930		614	putative protein [Arabidopsis thaliana]	0.748	0.802	0.497	1e-140
356518940		680	PREDICTED: uncharacterized protein LOC10	0.799	0.775	0.466	1e-140
297820390		602	predicted protein [Arabidopsis lyrata su	0.672	0.735	0.525	1e-139
356570173		626	PREDICTED: uncharacterized protein LOC10	0.798	0.840	0.482	1e-138

>gi\|255564100\|ref\|XP_002523048.1\| nucleic acid binding protein, putative [Ricinus communis] gi\|223537731\|gb\|EEF39352.1\| nucleic acid binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/633 (57%), Positives = 453/633 (71%), Gaps = 33/633 (5%)

Query: 35  NLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGS 94
           +LYP SID+ELWL+AE+R QEIL  +QP+  SE+KRKEVI+YIQRLI  +Y  EVFPFGS
Sbjct: 22  DLYPLSIDSELWLMAEKRTQEILWVLQPSSSSEQKRKEVIDYIQRLIKHHYATEVFPFGS 81

Query: 95  VPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKC 154
           VPLKTYLPDGDIDLT L HQN+EEDLAR VC IL   +Q+   E+KDV+Y+ AQVK+VKC
Sbjct: 82  VPLKTYLPDGDIDLTALSHQNMEEDLAREVCDILTYAEQNLESEVKDVRYIQAQVKVVKC 141

Query: 155 SVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGL 214
           SV+NI VDISFNQMAGL ALCFLE+VD+LIGKDHL K S+ILIKAWC+YESRILGAH+GL
Sbjct: 142 SVKNISVDISFNQMAGLCALCFLEQVDQLIGKDHLLKHSIILIKAWCFYESRILGAHHGL 201

Query: 215 ISTYALEMMVLH-----------------RFLDYYNTFDWDNYCISINGPVAISSLPEIV 257
           +STYALE++VL+                 RFL+YY+TFDWDNYC++INGPVAISSLPEI+
Sbjct: 202 LSTYALEILVLYIVNVFHSSLPGPLAVLYRFLEYYSTFDWDNYCVTINGPVAISSLPEIM 261

Query: 258 AETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSV 317
            E   ++ +ELLL+PEFLK+C+E +SVPI A+EN GHEF+IKHLNI+DPLKD+NNLGRSV
Sbjct: 262 TEAPYSNRNELLLTPEFLKRCKERFSVPIKAVENGGHEFSIKHLNILDPLKDSNNLGRSV 321

Query: 318 SKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAF 377
           SKGNFHRI+CALSYGAQRLGEIL LPG  +G GLE FFINTL+RNG+G RPD  VP+ AF
Sbjct: 322 SKGNFHRIKCALSYGAQRLGEILMLPGENMGAGLENFFINTLDRNGRGERPDALVPVPAF 381

Query: 378 GSGKSEAADLSGDYDSYYNGLLYGQCYHDYTLPVTAQFSPPSSPSQIPSRSAWDVLCQYV 437
           G+G+SEA+DLSGDYD+YYNG+L GQ YH Y+LPV+ Q +PPSSPSQI     WD L Q +
Sbjct: 382 GTGRSEASDLSGDYDNYYNGILQGQWYHSYSLPVSPQLTPPSSPSQIQQGCTWDTLSQLL 441

Query: 438 QGKGNLVYQWGTEVFVPRLPFCHPYASQVRASTFSTDEGEKSRGTGTYIPERTRPPPIEI 497
             K N + Q GT VFVPR+P+ HPYA++V A+  STDE  KSRGTGTYIP  +  P  + 
Sbjct: 442 WWKQNFLSQRGTNVFVPRVPYHHPYAAKVYATASSTDEMGKSRGTGTYIPHVSHHPCRDK 501

Query: 498 NRPVRARNPESLNHVPVSKLRRKIDKAERLPSRDNLESGC---SLNVENGCSLNMENSCS 554
               R +NP+SL +  ++  RRK +K E  P   +    C   SL+       N EN   
Sbjct: 502 MSCFRVKNPDSLTYSSINS-RRKAEKVEGGPEAKSDNECCLNLSLDQNKAREENSENGSC 560

Query: 555 LILSLEEFPLLPVTKNLPPSATNQQFDQSTDKSTQVDDVSSPVVTTIMFGTYEHSLKPSV 614
             LSL++FPLL           + Q      +S Q  + S+  + +I FGT+ H   P  
Sbjct: 561 PDLSLDQFPLL-----------SYQASHRILQSPQAKECSNS-IRSIPFGTFRHIPSPLA 608

Query: 615 LPSPSARMKVSGASTTLDTEPGLTIMERQKQQE 647
           LPS    ++     TT +  P +      KQQ+
Sbjct: 609 LPSSVTGVQTESVPTTSEIIPAIRETGMLKQQK 641

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255559667\|ref\|XP_002520853.1\| nucleic acid binding protein, putative [Ricinus communis] gi\|223539984\|gb\|EEF41562.1\| nucleic acid binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224146203\|ref\|XP_002325920.1\| predicted protein [Populus trichocarpa] gi\|222862795\|gb\|EEF00302.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|42565972\|ref\|NP_191191.2\| PAP/OAS1 substrate-binding domain-containing protein [Arabidopsis thaliana] gi\|30725328\|gb\|AAP37686.1\| At3g56320 [Arabidopsis thaliana] gi\|110736147\|dbj\|BAF00045.1\| hypothetical protein [Arabidopsis thaliana] gi\|332645988\|gb\|AEE79509.1\| PAP/OAS1 substrate-binding domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356570171\|ref\|XP_003553264.1\| PREDICTED: uncharacterized protein LOC100797780 [Glycine max]	Back alignment and taxonomy information

>gi\|356561857\|ref\|XP_003549193.1\| PREDICTED: uncharacterized protein LOC100787145 [Glycine max]	Back alignment and taxonomy information

>gi\|7572930\|emb\|CAB87431.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356518940\|ref\|XP_003528133.1\| PREDICTED: uncharacterized protein LOC100815787 [Glycine max]	Back alignment and taxonomy information

>gi\|297820390\|ref\|XP_002878078.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297323916\|gb\|EFH54337.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356570173\|ref\|XP_003553265.1\| PREDICTED: uncharacterized protein LOC100798838 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		659
TAIR\|locus:2078426		603	AT3G56320 [Arabidopsis thalian	0.795	0.868	0.443	2.9e-112
TAIR\|locus:2061868		502	AT2G40520 "AT2G40520" [Arabido	0.559	0.735	0.497	4.8e-94
TAIR\|locus:2081885		829	AT3G51620 "AT3G51620" [Arabido	0.300	0.238	0.588	4.7e-68
TAIR\|locus:2076795		1303	AT3G61690 [Arabidopsis thalian	0.295	0.149	0.562	2.7e-56
CGD\|CAL0005626		603	orf19.429 [Candida albicans (t	0.496	0.542	0.257	3.3e-05
UNIPROTKB\|I3LUY3		500	PAPD5 "Uncharacterized protein	0.376	0.496	0.274	4.1e-05
UNIPROTKB\|H3BQM0		588	PAPD5 "PAP-associated domain-c	0.241	0.270	0.289	5e-05
UNIPROTKB\|Q8NDF8		572	PAPD5 "PAP-associated domain-c	0.376	0.433	0.274	5e-05
UNIPROTKB\|J9PAB7		598	PAPD5 "Uncharacterized protein	0.241	0.265	0.289	5.2e-05
UNIPROTKB\|J9P5I2		614	PAPD5 "Uncharacterized protein	0.376	0.403	0.274	5.5e-05

TAIR\|locus:2078426 AT3G56320 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 251/566 (44%), Positives = 332/566 (58%)

Query:    10 MEDLQEELLTXXXXXXXXXXXXXXXNLYP---FSIDAELWLLAEERIQEILCTIQPAIVS 66
             M ++QE L                  L       IDA+ W++AEER  EILCTIQPA+VS
Sbjct:     1 MGEIQERLSVSSSSSSSSSSLSLSTALPKGDSLPIDADSWMIAEERAHEILCTIQPALVS 60

Query:    67 EKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCK 126
             ++ R E+I+Y++ LI  + GIEVF FGSVPLKTYLPDGDIDLTVL  QN+++D    +C 
Sbjct:    61 DRSRNEIIDYVRTLIMSHEGIEVFSFGSVPLKTYLPDGDIDLTVLTKQNMDDDFYGQLCS 120

Query:   127 ILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMAGLSALCFLEKVDRLIGK 186
              L+NE+++S F   DVQ++PAQVK++KC+++NI VDISFNQ AGL ALCFLE+VD+L G+
Sbjct:   121 RLQNEERESEFHATDVQFIPAQVKVIKCNIRNIAVDISFNQTAGLCALCFLEQVDQLFGR 180

Query:   187 DHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVL------HRFLD-----YYNTF 235
             DHLFKRS+IL+KAWCYYESRILGA+ GLISTYAL ++VL      H  L       Y   
Sbjct:   181 DHLFKRSIILVKAWCYYESRILGANTGLISTYALAVLVLYIINLFHSSLSGPLAVLYKFL 240

Query:   236 DWDNYCISINGPVAISSLPEIVAETVE------NDGDELLLSPEFLKKCREIYSVPITAL 289
             D+       N  ++++  P  ++   E       +G ELLL  +FL+ C E+YS P  A+
Sbjct:   241 DYYGSFDWNNYCISVNG-PVPISSLPELTAASPENGHELLLDEKFLRNCVELYSAPTKAV 299

Query:   290 ENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGM 349
             ++ G EF IKHLNIVDPLK +NNLG+SV++GN  RIR A + GA++L ++L+LPG  +G 
Sbjct:   300 DSNGLEFPIKHLNIVDPLKYSNNLGKSVTQGNVQRIRHAFTLGARKLRDVLSLPGDTMGW 359

Query:   350 GLEKFFINTLERNGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCYHDYTL 409
              LEKFF N+LERNGKG R DV  P+ AFG+G+SE ++LSGD+DS +  L+YGQ YH ++L
Sbjct:   360 RLEKFFRNSLERNGKGQRQDVNDPVTAFGTGRSELSELSGDFDSSFGRLVYGQMYHGHSL 419

Query:   410 PVTAQFXXXXXXXXXXXXXAWDVLCQYVQGKGNLVYQWGTEVFVPRLPFCHPYASQVRAS 469
             P T Q               WD++   V  + N  +     V     PF  P  S     
Sbjct:   420 PGTFQHGYIPVSSHLS---GWDIVRHLVTYRKNEFHLRSLNVSTSMQPF--PLHSLPNGC 474

Query:   470 TFSTDEGEKSRGTGTYXXXXXXXXXXXXXXXVRARNPESLNHVPVSKLRRKIDKAERLPS 529
                     K+RGTGTY                      S NH+  S     ID       
Sbjct:   475 ----QNMRKTRGTGTYIPDMSQQVYSDRFRE-SGTGTSSTNHLEASS--EAIDN------ 521

Query:   530 RDNLESGCSLN--VENGCSLNMENSC 553
              D   S C+L+  V   C+ N    C
Sbjct:   522 -DGASSCCNLSGEVSTSCTSNKGEEC 546

GO:0005634 "nucleus" evidence=ISM

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

TAIR\|locus:2061868 AT2G40520 "AT2G40520" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2081885 AT3G51620 "AT3G51620" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076795 AT3G61690 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0005626 orf19.429 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LUY3 PAPD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|H3BQM0 PAPD5 "PAP-associated domain-containing protein 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8NDF8 PAPD5 "PAP-associated domain-containing protein 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|J9PAB7 PAPD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P5I2 PAPD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIX.1587.1	hypothetical protein (490 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		659
cd05402		114	cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT	1e-17
COG5260		482	COG5260, TRF4, DNA polymerase sigma [DNA replicati	6e-08
pfam01909		92	pfam01909, NTP_transf_2, Nucleotidyltransferase do	6e-04

>gnl\|CDD\|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases	Back alignment and domain information

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 11/109 (10%)

Query: 69  KRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARF--VC 125
           KR+EV++ +Q LI  ++ G +++PFGS      LP  DIDL +LG  +  +       + 
Sbjct: 1   KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLA 60

Query: 126 KILENEDQDSVFEIKDVQYVP-AQVKIVKC--SVQNIPVDISFNQMAGL 171
           K+L+        E+ +V+ +  A+V I+K       I VDISFN + G+
Sbjct: 61  KLLKKSG-----EVVEVEPIINARVPIIKFVDKPTGIEVDISFNNLNGI 104

Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Length = 114

>gnl\|CDD\|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		659
KOG2245		562	consensus Poly(A) polymerase and related nucleotid	100.0
PTZ00418		593	Poly(A) polymerase; Provisional	100.0
COG5186		552	PAP1 Poly(A) polymerase [RNA processing and modifi	100.0
KOG1906		514	consensus DNA polymerase sigma [Replication, recom	100.0
COG5260		482	TRF4 DNA polymerase sigma [DNA replication, recomb	100.0
PF04928		254	PAP_central: Poly(A) polymerase central domain; In	99.94
cd05402		114	NT_PAP_TUTase Nucleotidyltransferase (NT) domain o	99.81
KOG2277		596	consensus S-M checkpoint control protein CID1 and	99.8
TIGR03671		408	cca_archaeal CCA-adding enzyme.	99.79
PRK13300		447	tRNA CCA-pyrophosphorylase; Provisional	99.78
COG1746		443	CCA1 tRNA nucleotidyltransferase (CCA-adding enzym	99.75
PF09249		114	tRNA_NucTransf2: tRNA nucleotidyltransferase, seco	98.39
PF03828		60	PAP_assoc: Cid1 family poly A polymerase; InterPro	98.2
cd05400		143	NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT	97.77
cd05397		49	NT_Pol-beta-like Nucleotidyltransferase (NT) domai	97.74
PF01909		93	NTP_transf_2: Nucleotidyltransferase domain A subs	97.64
PF10421		190	OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain	97.64
PF03813		972	Nrap: Nrap protein; InterPro: IPR005554 Members of	97.5
smart00572		246	DZF domain in DSRM or ZnF_C2H2 domain containing p	97.49
cd05403		93	NT_KNTase_like Nucleotidyltransferase (NT) domain	97.3
KOG1906		514	consensus DNA polymerase sigma [Replication, recom	96.9
COG1669		97	Predicted nucleotidyltransferases [General functio	96.37
PRK13746		262	aminoglycoside resistance protein; Provisional	96.12
COG1708		128	Predicted nucleotidyltransferases [General functio	95.68
PF14091		152	DUF4269: Domain of unknown function (DUF4269)	95.33
KOG2054		1121	consensus Nucleolar RNA-associated protein (NRAP)	94.75
KOG3793		362	consensus Transcription factor NFAT, subunit NF45	93.23
PF03813		972	Nrap: Nrap protein; InterPro: IPR005554 Members of	92.42
PRK02098		221	phosphoribosyl-dephospho-CoA transferase; Provisio	91.71
PF07528		248	DZF: DZF domain; InterPro: IPR006561 This domain i	91.68
TIGR03135		202	malonate_mdcG holo-ACP synthase, malonate decarbox	90.92
PF14792		112	DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R	86.15

>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=1.1e-44  Score=390.25  Aligned_cols=329  Identities=19%  Similarity=0.271  Sum_probs=257.9

Q ss_pred             CCCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----------------
Q 006140           23 HTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----------------   85 (659)
Q Consensus        23 ~~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----------------   85 (659)
                      ..||+|+|||+++|+.+|+..+..|..++.-..++    +++||..+|.+|++.|++++++|.                 
T Consensus        13 ~~~Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~f----Es~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~a   88 (562)
T KOG2245|consen   13 KSYGVTQPISTAGPTEADIALTQELIKTLKNEGLF----ESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENA   88 (562)
T ss_pred             ccccccCCcccCCCcHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhc
Confidence            56999999999999999999888776666555444    559999999999999999999883                 


Q ss_pred             CCceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEE
Q 006140           86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDI  163 (659)
Q Consensus        86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDI  163 (659)
                      |++|++||||++|++.|++|||.+|++|.++ ++|||..+.++|++.+     +|++++.+ +|.||||||+++||.|||
T Consensus        89 ggkIftfGSYRLGVhg~GADIDtLcV~Prhv~R~DFF~sf~~mL~~~~-----eVteL~~V~dAfVPiikfKf~GI~IDl  163 (562)
T KOG2245|consen   89 GGKIFTFGSYRLGVHGPGADIDTLCVGPRHVSRSDFFTSFYDMLKERP-----EVTELHAVEDAFVPIIKFKFDGIEIDL  163 (562)
T ss_pred             CceEEeccceeecccCCCCCcceeeeccccccHHHHHHHHHHHHhcCc-----cccccccccccccceEEEEecCeeeee
Confidence            7999999999999999999999999999987 8899999999999877     68888877 999999999999999999


Q ss_pred             eeecccccch--------hHHH-----------------HHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHH
Q 006140          164 SFNQMAGLSA--------LCFL-----------------EKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTY  218 (659)
Q Consensus       164 Sfnn~~gi~~--------s~~L-----------------~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSY  218 (659)
                      .|+++.....        ..+|                 ++|+++|++...|+..+|+||+||| +++||++..|+|||.
T Consensus       164 lfArL~l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAK-rrgVYsN~~GF~GGV  242 (562)
T KOG2245|consen  164 LFARLALPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAK-RRGVYSNVMGFLGGV  242 (562)
T ss_pred             eehhcccccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHH-hcccccccccccchH
Confidence            9998754322        1222                 5788999999999999999999999 579999999999999


Q ss_pred             HHHHHH---------------HHHHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhcc
Q 006140          219 ALEMMV---------------LHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYS  283 (659)
Q Consensus       219 aL~lLV---------------L~~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~  283 (659)
                      +|+|||               +.+||..|++|+|++.       |.|+.+.+    ++-+   ..+|++           
T Consensus       243 ~wA~LVARiCQLYPNA~~s~Lv~kfF~ifs~W~WP~P-------VlL~~ie~----~~L~---~~VWdP-----------  297 (562)
T KOG2245|consen  243 AWAMLVARICQLYPNASPSTLVAKFFRVFSQWNWPNP-------VLLKPIEE----GNLN---LPVWDP-----------  297 (562)
T ss_pred             HHHHHHHHHHccCCCcchHHHHHHHHHHHhhccCCCc-------eEeccccc----cccC---ccccCC-----------
Confidence            999999               7899999999999994       44443321    1100   011111           


Q ss_pred             ccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHhcCCCcchhh--hhhhHhHHhhhc
Q 006140          284 VPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGM--GLEKFFINTLER  361 (659)
Q Consensus       284 ~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il~~p~e~~~~--~~~~fF~~tl~r  361 (659)
                        .++.     .-+.+.|+|++|+.|++|.+++|+++|+..|.+||.+|..++.+|+.-.. ....  |...||..- +.
T Consensus       298 --r~n~-----~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~Ef~~g~~I~~~i~~~k~-~W~~LFE~~~FF~rY-k~  368 (562)
T KOG2245|consen  298 --RVNP-----SDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEEFKRGLEICDDIELNKL-DWSDLFELYNFFSRY-KH  368 (562)
T ss_pred             --CCCC-----CCcceecccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHhhhhHHHHHH-hh
Confidence              1111     11247999999999999999999999999999999999999999986322 2222  234566543 11


Q ss_pred             cCCCCCCCCCCccccccCCCccccccCCCcccccccccccccc
Q 006140          362 NGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCY  404 (659)
Q Consensus       362 ~g~g~rpd~~~~~~~~g~~~~~~~~L~GD~~s~~~nl~Ygq~~  404 (659)
                      . ..        +.+..+...++..+.|=++|.++-|.-.-..
T Consensus       369 y-l~--------i~~~A~~~ed~l~w~G~vESriR~Lv~klE~  402 (562)
T KOG2245|consen  369 Y-LQ--------ITASAATEEDLLKWVGWVESRIRQLVLKLER  402 (562)
T ss_pred             H-he--------eeeeccChHHHhhhhhHHHHHHHHHHHHHHh
Confidence            1 01        1112233456677888888888877644333

>PTZ00418 Poly(A) polymerase; Provisional	Back alignment and domain information

>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]	Back alignment and domain information

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]	Back alignment and domain information

>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]	Back alignment and domain information

>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs	Back alignment and domain information

>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases	Back alignment and domain information

>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR03671 cca_archaeal CCA-adding enzyme	Back alignment and domain information

>PRK13300 tRNA CCA-pyrophosphorylase; Provisional	Back alignment and domain information

>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core	Back alignment and domain information

>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1	Back alignment and domain information

>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme	Back alignment and domain information

>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins	Back alignment and domain information

>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis	Back alignment and domain information

>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat	Back alignment and domain information

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human	Back alignment and domain information

>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins	Back alignment and domain information

>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	Back alignment and domain information

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]	Back alignment and domain information

>COG1669 Predicted nucleotidyltransferases [General function prediction only]	Back alignment and domain information

>PRK13746 aminoglycoside resistance protein; Provisional	Back alignment and domain information

>COG1708 Predicted nucleotidyltransferases [General function prediction only]	Back alignment and domain information

>PF14091 DUF4269: Domain of unknown function (DUF4269)	Back alignment and domain information

>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]	Back alignment and domain information

>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]	Back alignment and domain information

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human	Back alignment and domain information

>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional	Back alignment and domain information

>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO)	Back alignment and domain information

>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific	Back alignment and domain information

>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		659
3nyb_A		323	Poly(A) RNA polymerase protein 2; polya RNA polyme	2e-32
2hhp_A		530	Poly(A) polymerase; template-independent RNA polym	3e-30
1q79_A		514	Poly(A) polymerase alpha; mRNA processing, nucleot	3e-28
4ep7_A		340	Poly(A) RNA polymerase protein CID1; poly(U) polym	3e-28
4e8f_A		405	Poly(A) RNA polymerase protein CID1; beta polymera	1e-27
2ikf_A		353	RNA uridylyl transferase; tutase, nucleotidyltrans	9e-22
3hj4_A		384	Minor editosome-associated tutase; nucleotidyltran	4e-19
3hj4_A		384	Minor editosome-associated tutase; nucleotidyltran	3e-08
2b4v_A		468	RNA editing complex protein MP57; tbret2, TBMP57,	5e-16
3pq1_A		464	Poly(A) RNA polymerase; nucleotidyl transferase, R	5e-15
1r89_A		437	TRNA nucleotidyltransferase; CCA adding enzyme, in	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323	Back alignment and structure

 Score =  126 bits (318), Expect = 2e-32
 Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 64/312 (20%)

Query: 51  ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLT 109
             I++ +  I P+    + R + I+ I+  +   +   ++  FGS     YLP  DID  
Sbjct: 23  FEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCV 82

Query: 110 VLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMA 169
           V      +E            + ++   E++ V      +         I + +SF +  
Sbjct: 83  VTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTN 142

Query: 170 GLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMV----- 224
           G+ A   + +    +      +  V+++K + +   R+   H G +  +++  +V     
Sbjct: 143 GIEAAKLIRE---WLDDTPGLRELVLIVKQFLHAR-RLNNVHTGGLGGFSIICLVFSFLH 198

Query: 225 -------------------LHRFLDYY-NTFDWDNYCISINGPVAISSLPEIVAETVEND 264
                              L  F + Y   F +D+  +                    +D
Sbjct: 199 MHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGS------------------SD 240

Query: 265 GDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHR 324
           G  +          + I +                 L I DP  ++NN+ R     N   
Sbjct: 241 GYPVYFPKSTWSAIQPIKN--------------PFSLAIQDPGDESNNISRGSF--NIRD 284

Query: 325 IRCALSYGAQRL 336
           I+ A +     L
Sbjct: 285 IKKAFAGAFDLL 296

PyMOL of 3nyb

>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530	Back alignment and structure

>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340	Back alignment and structure

>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405	Back alignment and structure

>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353	Back alignment and structure

>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468	Back alignment and structure

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464	Back alignment and structure

>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Length = 437	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		659
1q79_A		514	Poly(A) polymerase alpha; mRNA processing, nucleot	100.0
2hhp_A		530	Poly(A) polymerase; template-independent RNA polym	100.0
4fh3_A		349	Poly(A) RNA polymerase protein CID1; nucleotidyltr	100.0
3nyb_A		323	Poly(A) RNA polymerase protein 2; polya RNA polyme	100.0
2ikf_A		353	RNA uridylyl transferase; tutase, nucleotidyltrans	100.0
4e8f_A		405	Poly(A) RNA polymerase protein CID1; beta polymera	100.0
3hj4_A		384	Minor editosome-associated tutase; nucleotidyltran	100.0
2b4v_A		468	RNA editing complex protein MP57; tbret2, TBMP57,	100.0
3pq1_A		464	Poly(A) RNA polymerase; nucleotidyl transferase, R	100.0
1r89_A		437	TRNA nucleotidyltransferase; CCA adding enzyme, in	99.7
1px5_A		349	2'-5'-oligoadenylate synthetase 1; 5-stranded anti	99.44
4at7_A		364	Interleukin enhancer-binding factor 2; transcripti	97.78
1no5_A		114	Hypothetical protein HI0073; structural genomics,	97.64
1ylq_A		96	Putative nucleotidyltransferase, hypothetical Pro	97.44
1wot_A		98	Putative minimal nucleotidyltransferase; alpha and	97.36
2rff_A		111	Putative nucleotidyltransferase; NP_343093.1, nucl	96.91
4at7_B		383	NF90, interleukin enhancer-binding factor 3; trans	96.33
4ebj_A		272	Aminoglycoside nucleotidyltransferase; structural	95.59
1kny_A		253	Kntase, kanamycin nucleotidyltransferase; antibiot	95.49
3jz0_A		287	Lincosamide nucleotidyltransferase; alpha-beta str	89.47
2fmp_A		335	DNA polymerase beta; nucleotidyl transferase, tran	83.42

>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*	Back alignment and structure

>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*	Back alignment and structure

>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*	Back alignment and structure

>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A	Back alignment and structure

>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*	Back alignment and structure

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}	Back alignment and structure

>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...	Back alignment and structure

>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6	Back alignment and structure

>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*	Back alignment and structure

>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5	Back alignment and structure

>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5	Back alignment and structure

>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5	Back alignment and structure

>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}	Back alignment and structure

>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*	Back alignment and structure

>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A	Back alignment and structure

>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*	Back alignment and structure

>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		659
d2q66a2		197	d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter	1e-20
d1q79a2		196	d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te	2e-16
d2b4va1		183	a.160.1.4 (A:289-471) RNA editing terminal uridyl	5e-12
d1r89a2		142	d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N	1e-04

>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.4 bits (219), Expect = 1e-20
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 26/150 (17%)

Query: 66  SEKKRKEVINYIQRLINGYY-----------------GIEVFPFGSVPLKTYLPDGDIDL 108
               R +V+  +Q L   +                  G ++F +GS  L  + P  DID 
Sbjct: 40  ETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDT 99

Query: 109 TVLGHQNVE-EDLARFVCKILENEDQDSVFEIKDVQYVP-AQVKIVKCSVQNIPVDISFN 166
            V+  ++V  ED       +L         E+ ++  VP A V I+K     I + +   
Sbjct: 100 LVVVPKHVTREDFFTVFDSLLRERK-----ELDEIAPVPDAFVPIIKIKFSGISIALICA 154

Query: 167 QMAGLSALCFLEKVDR--LIGKDHLFKRSV 194
           ++        L   D+  L   D    R++
Sbjct: 155 RLDQPQVPLSLTLSDKNLLRNLDEKDLRAL 184

PyMOL of d2q66a2

>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196	Back information, alignment and structure

>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183	Back information, alignment and structure

>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		659
d2q66a2		197	Poly(A) polymerase, PAP, N-terminal domain {Baker'	99.93
d1q79a2		196	Poly(A) polymerase, PAP, N-terminal domain {Cow (B	99.93
d2b4va1		183	RNA editing terminal uridyl transferase 2, TUTase	99.82
d1q79a1		150	Poly(A) polymerase, PAP, middle domain {Cow (Bos t	99.76
d2q66a1		150	Poly(A) polymerase, PAP, middle domain {Baker's ye	99.75
d1r89a2		142	tRNA nucleotidyltransferase, N-terminal domain {Ar	98.98
d1r89a1		115	tRNA nucleotidyltransferase, second domain {Archae	98.34
d1no5a_		100	Hypothetical protein HI0073 {Haemophilus influenza	98.18
d1ylqa1		90	Putative nucleotidyltransferase AF0614 {Archaeon A	97.77
d1wota_		98	Unnamed putative nucleotidyltransferase {Thermus t	97.21
d2b4va2		259	RNA editing terminal uridyl transferase 2, TUTase	96.99
d1px5a1		146	2'-5'-oligoadenylate synthetase 1, OAS1, second do	96.88
d1knya2		125	Kanamycin nucleotidyltransferase (KNTase), N-termi	96.8
d1px5a2		200	2'-5'-oligoadenylate synthetase 1, OAS1, N-termina	96.72
d2pbea2		135	Aminoglycoside 6-adenylyltransferase AadK {Bacillu	91.32
d2fmpa3		187	DNA polymerase beta, catalytic (31 kD) fragment {H	86.6
d2bcqa3		190	DNA polymerase lambda {Human (Homo sapiens) [TaxId	83.22
d1jmsa4		208	Terminal deoxynucleotidyl transferase {Mouse (Mus	81.48

>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.4e-26  Score=225.14  Aligned_cols=145  Identities=20%  Similarity=0.223  Sum_probs=124.2

Q ss_pred             CCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----------------C
Q 006140           24 TSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----------------G   86 (659)
Q Consensus        24 ~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----------------~   86 (659)
                      .+|+|+|||++.|+|++++.+.+|..+..-.    .+-||+||.++|++++++|++++++|.                 +
T Consensus         2 ~~Gvt~Pis~~~Pt~~d~~~s~~L~~~L~~~----~~~~s~ee~~~R~~vl~~l~~iv~~~v~~~~~~~~~~~~~~~~~~   77 (197)
T d2q66a2           2 VFGITGPVSTVGATAAENKLNDSLIQELKKE----GSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAG   77 (197)
T ss_dssp             CCSSSCCSCCCCCCHHHHHHHHHHHHHHHHT----TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTB
T ss_pred             cCcCCCCcccCCCChHHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCC
Confidence            4899999999999999998876654433222    366999999999999999999998762                 7


Q ss_pred             CceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEEe
Q 006140           87 IEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDIS  164 (659)
Q Consensus        87 ~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDIS  164 (659)
                      ++|++||||++|+++|+||||++|++|..+ +++|+..+.++|++..     .+++|+.| +|+||||||.++||.|||+
T Consensus        78 ~~v~~fGS~~lg~~~p~SDID~~~~~p~~~~~~~ff~~l~~~L~~~~-----~v~~i~~I~~A~VPIIK~~~~gi~iDls  152 (197)
T d2q66a2          78 GKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERK-----ELDEIAPVPDAFVPIIKIKFSGISIALI  152 (197)
T ss_dssp             CEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCT-----TEEEEEEECSSSSCEEEEEETTEEEEEE
T ss_pred             cEEEecccccccccCCCCCcceEEecCCcCCHHHHHHHHHHHHHhCC-----CCceeEEeecccccEEEEEEcCEEEEee
Confidence            899999999999999999999999998766 6799999999999865     47888888 8999999999999999999


Q ss_pred             eecccccchhHHH
Q 006140          165 FNQMAGLSALCFL  177 (659)
Q Consensus       165 fnn~~gi~~s~~L  177 (659)
                      |+++......+.+
T Consensus       153 fa~l~~~~~p~~l  165 (197)
T d2q66a2         153 CARLDQPQVPLSL  165 (197)
T ss_dssp             EEECSSSCBCTTC
T ss_pred             cccccCCCCCCcc
Confidence            9987665554433

PyMOL of d2q66a2

>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure