Citrus Sinensis ID: 006185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
Protein Sequence
MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSGISSGDYFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEcccccccccccccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEcccccccccccccccccccccccEEEcccccccccccccHHHcccccHHcccccccccEEEEEcccccccccccccccccccEEEEcccccccHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccEEEccccccccccccccccEEEcccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccccccEEEcccccccccccccccccEEEccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEccccccccccccccccccccEEEEEEEccEEccccccHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHccEEEEEccccHHHccccccccccEEEEEcccccccccHHHHHHccccEEEEccccccccccccHHHHHHccEEEccccccccccHHHHHHcccEEEEcccccHHHccHHHHHHHcccEEEcccccccccccHHHHHHHHcccEEEEccccccEcccccccccccccHHHHHccHcccEEEEEcccHcccccccccHHHccEEEEEcccccccccccccHHHccHHHHHHHHHccccccccccccHHHHHHcccEEEEcccccccccccccccccccccEEEEEccccccEEcccccccccccccccccEEEEcccHHHHHHccccccccccccccEEEEcccHcHcccccccHHcccccccEEEEcccccHHEEEcccccccccccccccccccEEEEcccccccHcccccccccccccccEEEEcccHHHHHccccccccHcccHHHHcccccccEcccHHcccccccccccccccEEEEcccccHHHcccHHHHHHHHcccEEEEcccHHHHHHEccccccHHHccccccccccccccEEEEccccccccccccccccccccccccEEEEEccccccEcccccccccHHcEEEEEccccccccccHHHHHHHHHHccHcccHccccccccccccccc
Coil and Loop (DISEMBL)
mragvelkdwpsintfedltgislmfndihevpdglecpkLQALFLqknhllvipdpffqgmkdlkvldlggirmvsppsslsflSNLRTLRLDYcnhlpdlsligelsgleildlsksdvneipvsfgrlshlrlldltdcynlelippgvLSRLRKLEELYMSHsfchwqfeseedtrsNAKFIELGALSRLtslhidipkgeimpsdmslpnltsfsitigeedtLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEIchgqlpagclsnvkrldvvgcgsmlkilpsHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEkltlidlprmtdiwkgdTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHihattstssptpslgnlvsITIRGCGKLRNLFTTSMVKSLVRLeslevsscptlqeiimddegevglqgastkkitfpslfsiklcdlgsltcfsssglhATVEFLALEALqiidcpgmktfgygnqltpkllkgvefgyckycwtgnlnhTIQQYVYNEKKIWEKQAMksgissgdyfl
Flexible Loop (DISEMBL)
mragvelkdwpsinTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRqvfpanlgkkaAAEEMVLYRNRRYQIHIhattstssptpslgNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAmksgissgdyfl
Low Complexity Region (SEG)
MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVsppsslsflsNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHAttstssptpsLGNLVSITIRGCGKLRNLFTTSMVKslvrleslevssCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSGISSGDYFL
Disordered region (IsUnstruct)
******LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATT*******SLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEK**************
Disordered Region (DISOPRED)
**AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELI****LSRLRKLEELYMSHSFCHWQFESEE*****AKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSV**************LFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANL********MVLYRNRRYQIHIHA*TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMD**************ITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWE***************
Disordered Region (DISEMBL)
MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSG********
Disordered Region (DISPRO)
****VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEV***GASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSGISS***FL
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSGISSGDYFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	657	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.657	0.470	0.283	2e-21
Q9T048	985	Disease resistance protei	no	no	0.336	0.224	0.342	5e-19
Q42484	909	Disease resistance protei	no	no	0.525	0.379	0.250	5e-15
O64973	889	Disease resistance protei	no	no	0.149	0.110	0.41	3e-10
Q940K0	889	Probable disease resistan	no	no	0.179	0.132	0.335	4e-09
P60839	884	Probable disease resistan	no	no	0.144	0.107	0.402	6e-09
Q6INV3	238	Leucine-rich repeat-conta	N/A	no	0.210	0.579	0.326	9e-08
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.222	0.078	0.316	1e-07
P60838	894	Probable disease resistan	no	no	0.178	0.130	0.35	2e-07
Q24020	1256	Protein flightless-1 OS=D	no	no	0.197	0.103	0.358	3e-07

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 40/472 (8%)

Query: 3   AGVELKDWPSINTFEDLTGISLMFNDIHEVPDG-LECPKLQALFLQKN-HLLVIPDPFFQ 60
           AG  L ++P       +  +SLM N +  +P+  +E  +   L LQ N H+  +P+ F Q
Sbjct: 456 AGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQ 515

Query: 61  GMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSD 120
              +L++LDL G+R+ + P S S L +LR+L L  C  L +L  +  L  L+ LDL +S 
Sbjct: 516 AFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESA 575

Query: 121 VNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTR 180
           + E+P     LS LR + +++ Y L+ IP G + +L  LE L M+ S   W  + EE   
Sbjct: 576 IRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWGIKGEE-RE 634

Query: 181 SNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENF 240
             A   E+  L  L  L I             L ++ SFS    E D+L   +  F   F
Sbjct: 635 GQATLDEVTCLPHLQFLAI------------KLLDVLSFSY---EFDSLTKRLTKFQFLF 679

Query: 241 NK-RCSRAMGLSQ------DMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDF 293
           +  R     G  +      D+ +S  ++ I  LL     L L     L  +F NL     
Sbjct: 680 SPIRSVSPPGTGEGCLAISDVNVS--NASIGWLLQHVTSLDLNYCEGLNGMFENLVTKSK 737

Query: 294 NELMFLYIFGCNEMKCL-LNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGC---L 349
           +  + +     +    L L S   +Q      LE L + +N N   I  G+L       L
Sbjct: 738 SSFVAMKALSIHYFPSLSLASGCESQLDLFPNLEELSL-DNVNLESI--GELNGFLGMRL 794

Query: 350 SNVKRLDVVGCGSMLKILPSH-LVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELF 408
             +K L V GC  + ++     L  +  NLQ + V SC  L  +F    V +      L 
Sbjct: 795 QKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESL- 853

Query: 409 SSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV--FPANLG 458
             L KLT+I L  +  +       V L +L+ + VE C+ L+ +   P N G
Sbjct: 854 --LPKLTVIKLKYLPQLRSLCNDRVVLESLEHLEVESCESLKNLPFVPGNTG 903

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 109/228 (47%), Gaps = 7/228 (3%)

Query: 3   AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLE--CPKLQALFLQKNHLLV-IPDPFF 59
           +G  L+D         L  +SLM N +  +PD +E  C K   L LQ N LL  +P  F 
Sbjct: 487 SGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFL 546

Query: 60  QGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSK 118
           Q    L++L+L G R+ S PS SL  L +L +L L  C  L  L  +  L+ LE+LDL  
Sbjct: 547 QAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCG 606

Query: 119 SDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEED 178
           + + E P     L   R LDL+   +LE IP  V+SRL  LE L M+ S   W  + E  
Sbjct: 607 THILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWSVQGETQ 666

Query: 179 TRSNAKFIELGALSRLTSLHIDIPKGEIM--PSDMSLPNLTSFSITIG 224
            +  A   E+G L RL  L I +     +    +  +  L  F + +G
Sbjct: 667 -KGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVG 713

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 168/435 (38%), Gaps = 90/435 (20%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH-LLVIPDPFFQGMKDLKVLD 69
           P    +     ISL+ N I  +P+ L CPKL  L LQ+N  L  IP  FF  M  L+VLD
Sbjct: 505 PKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLD 564

Query: 70  LGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFG 129
           L    +   P S+ +L  L  L                        +S + ++ +P   G
Sbjct: 565 LSFTSITEIPLSIKYLVELYHL-----------------------SMSGTKISVLPQELG 601

Query: 130 RLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES-EEDTRSNAKFIEL 188
            L  L+ LDL     L+ IP   +  L KLE L + +S+  W+ +S  ED      F +L
Sbjct: 602 NLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADL 661

Query: 189 GALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM 248
             L                       NLT+  IT+   +TL    E              
Sbjct: 662 EYLE----------------------NLTTLGITVLSLETLKTLFEF------------- 686

Query: 249 GLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLAN--DDFNELMFLYIFGCNE 306
                    ALH  I++L +        E N+L  ++ NL +  +    L  L I  C++
Sbjct: 687 --------GALHKHIQHLHVE-------ECNEL--LYFNLPSLTNHGRNLRRLSIKSCHD 729

Query: 307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKI 366
           ++ L+   +  +   L  LE L +    N   +    +   CL N++ +++  C  +  +
Sbjct: 730 LEYLVTPAD-FENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV 788

Query: 367 LPSHLVQSFQNLQRLMVESC---ELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMT 423
                VQ    L+ + +  C   E L+S  E   V    E+  LF SL+ L   DLP + 
Sbjct: 789 ---SWVQKLPKLEVIELFDCREIEELISEHESPSV----EDPTLFPSLKTLRTRDLPELN 841

Query: 424 DIWKGDTQFVSLHNL 438
            I      F  +  L
Sbjct: 842 SILPSRFSFQKVETL 856

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 2/100 (2%)

Query: 1   MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ 60
           +RAGV L++ P +  +  +  ISLM N+I E+ D  EC  L  LFLQKN ++ I   FF+
Sbjct: 501 VRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFR 560

Query: 61  GMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDY-CNH 98
            M  L VLDL   + ++  P  +S L++LR   L Y C H
Sbjct: 561 CMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIH 600

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 22/140 (15%)

Query: 1   MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ 60
           ++AGV L + P +  +  +  +SLM NDI E+    +C +L  LFLQ N L  +P  F +
Sbjct: 495 VQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIR 554

Query: 61  GMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSD 120
            M+ L VLDL   R                   D+ N LP+   I  L  L+ LDLS + 
Sbjct: 555 YMQKLVVLDLSYNR-------------------DF-NKLPE--QISGLVSLQFLDLSNTS 592

Query: 121 VNEIPVSFGRLSHLRLLDLT 140
           +  +P+    L  L  LDLT
Sbjct: 593 IEHMPIGLKELKKLTFLDLT 612

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 1   MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKN-HLLVIPDPFF 59
           +RAG  L + P +  ++ ++ +SL+ N I E+    ECPKL  LFLQ N HL+ I   FF
Sbjct: 502 VRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTTLFLQDNRHLVNISGEFF 561

Query: 60  QGMKDLKVLDLG-GIRMVSPPSSLSFLSNLRTLRLDY 95
           + M  L VLDL   + +   P  +S L +LR L L Y
Sbjct: 562 RSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSY 598

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6INV3|LRC57_XENLA Leucine-rich repeat-containing protein 57 OS=Xenopus laevis GN=lrrc57 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 12/150 (8%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
           P +  F  L  +SL  N I  +PD L +  KL+ L L  N +  +P  F Q +  LK L+
Sbjct: 55  PMMGKFSLLKSLSLNNNRISRLPDELCKLKKLETLHLNGNQISQLPADFVQLLA-LKTLN 113

Query: 70  LGGIRMVSPPSSLSFLSNLRTLRL--DYCNHLPDLSLIGELSGLEI--LDLSKSDVNEIP 125
           L G R+ + P+ L  L NL  + L  +    +PD     E+SGL+   L+L+++ +++I 
Sbjct: 114 LSGNRLKTLPAQLFKLRNLDVVDLSKNRIQAIPD-----EVSGLQAIELNLNQNQISQIS 168

Query: 126 VSFGRLSHLRLLDLTD-CYNLELIPPGVLS 154
           V+      L++L L + C  L ++PP +LS
Sbjct: 169 VNISHCPRLKVLRLEENCLELSMLPPSILS 198

Xenopus laevis (taxid: 8355)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
           P I  FE+L  + +  NDI ++PD ++    LQ      N +  +P  F Q +K+L VL 
Sbjct: 77  PDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFSSNPIPKLPSGFSQ-LKNLTVLG 135

Query: 70  LGGIRMVSPPSSLSFLSNLRTLRL--DYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS 127
           L  + + + P+    L+ L +L L  +   HLP+   I +L+ L+ LDL  +++ ++P  
Sbjct: 136 LNDMSLTTLPADFGSLTQLESLELRENLLKHLPE--TISQLTKLKRLDLGDNEIEDLPPY 193

Query: 128 FGRLSHLRLLDLTDCYNLELIPP--GVLSRLRKLE 160
            G L  L  L L D   L+ +PP  G+L++L  L+
Sbjct: 194 LGYLPGLHELWL-DHNQLQRLPPELGLLTKLTYLD 227

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 1   MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKN-HLLVIPDPFF 59
           ++ GV L++ P +  +  +  +SLM N+I  +    EC +L  LFLQKN  LL I D FF
Sbjct: 500 VQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFF 559

Query: 60  QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS 119
           + +  L VLDL G       SSL  L N                 I +L  L  LDLS +
Sbjct: 560 RCIPMLVVLDLSG------NSSLRKLPN----------------QISKLVSLRYLDLSWT 597

Query: 120 DVNEIPVSFGRLSHLRLLDL 139
            +  +PV    L  LR L L
Sbjct: 598 YIKRLPVGLQELKKLRYLRL 617

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q24020|FLII_DROME Protein flightless-1 OS=Drosophila melanogaster GN=fliI PE=2 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 4/134 (2%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLECPK-LQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
           P +   E+LT + L  N + EVP+GLE  K L  L L  N +  IP P F  + DL  LD
Sbjct: 94  PELFHLEELTTLDLSHNKLKEVPEGLERAKNLIVLNLSNNQIESIPTPLFIHLTDLLFLD 153

Query: 70  LGGIRMVSPPSSLSFLSNLRTLRLDYCN-HLPDLSLIGELSGLEILDLSKSDVN--EIPV 126
           L   R+ + P     L NL+TL L +    L  L  +  L  LE+L +S +       P 
Sbjct: 154 LSHNRLETLPPQTRRLINLKTLDLSHNPLELFQLRQLPSLQSLEVLKMSGTQRTLLNFPT 213

Query: 127 SFGRLSHLRLLDLT 140
           S   L++L  LDL+
Sbjct: 214 SIDSLANLCELDLS 227

May play a key role in embryonic cellularization by interacting with both the cytoskeleton and other cellular components. Alternatively, it may play a structural role in indirect flight muscle. Vital for embryonic development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.876	0.438	0.334	1e-74
359494129	1144	PREDICTED: disease resistance protein At	0.907	0.520	0.333	3e-74
297735461	1063	unnamed protein product [Vitis vinifera]	0.799	0.493	0.346	2e-68
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.863	0.423	0.337	3e-68
147832986	975	hypothetical protein VITISV_010740 [Viti	0.799	0.538	0.342	7e-68
225445915	1063	PREDICTED: disease resistance protein At	0.797	0.492	0.347	9e-68
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.859	0.422	0.336	3e-66
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.859	0.229	0.333	4e-65
297735460	1042	unnamed protein product [Vitis vinifera]	0.762	0.480	0.333	3e-63
359488103	1530	PREDICTED: disease resistance protein At	0.884	0.379	0.290	6e-61

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 317/607 (52%), Gaps = 31/607 (5%)

Query: 6    ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQA-LFLQKNHLLVIPDPFFQGMKD 64
            E K+WP+ +  +  T ISL F  I ++P  LECP L + L L K+  L IPD FF+ MK+
Sbjct: 484  EFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLNKDPSLQIPDSFFREMKE 543

Query: 65   LKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124
            LK+LDL  + +   PSSL FL NL+TL LD+C  L D+S+IGEL+ L++L L  S++  +
Sbjct: 544  LKILDLTEVNLSPLPSSLQFLENLQTLCLDHC-VLEDISIIGELNKLKVLSLMSSNIVRL 602

Query: 125  PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK 184
            P   G+++ L+LLDL++C  LE+I P  LS L +LE+LYM +SF  W+ E     R+NA 
Sbjct: 603  PREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGNSFVKWETEGSSSQRNNAC 662

Query: 185  FIELGALSRLTSLHIDIPKGEIMPSDM--SLPNLTSFSITIGEEDTLNDFIELFLENFNK 242
              EL  LS L++LH+ I   + MP D+  S  NL  F I IG+          +  +   
Sbjct: 663  LSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDG---------WDWSVKD 713

Query: 243  RCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIF 302
              SR + L  +  I  L   +  LL  +E L L E+N +++I ++L  + F +L  L++ 
Sbjct: 714  ATSRTLKLKLNTVIQ-LEEGVNTLLKITEELHLQELNGVKSILNDLDGEGFPQLRHLHVQ 772

Query: 303  GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGS 362
             C  ++ ++NS+    R     L+ LF+    N  +ICHGQL A  L N++ L V  C  
Sbjct: 773  NCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHR 832

Query: 363  MLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETEL--FSSLEKLTLIDLP 420
            +  +    + +    L+ + +  C+++  V   E  N A +   +  F+ L +LTL  LP
Sbjct: 833  LKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPIIEFTQLRRLTLQCLP 892

Query: 421  RMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAA-EEMVLYRN----RRYQ 475
            + T       +       +K+   E      V    LG   +     +L+ N    +   
Sbjct: 893  QFTSFHSNVEESSDSQRRQKLLASEARSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSS 952

Query: 476  IHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQE 533
            I +        S  +P + NL SI +  C  L  L T+SMV+SL +L+ LE+ +C +++E
Sbjct: 953  IKVEKIWHDQPSVQSPCVKNLASIAVENCRNLNYLLTSSMVESLAQLKKLEICNCKSMEE 1012

Query: 534  IIM-DDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIID 592
            I++ +D GE    G    K+ FP L  + L  L  LT F +S L   +E  +L+ L + +
Sbjct: 1013 IVVPEDIGE----GKMMSKMLFPKLLILSLIRLPKLTRFCTSNL---LECHSLKVLTVGN 1065

Query: 593  CPGMKTF 599
            CP +K F
Sbjct: 1066 CPELKEF 1072

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494129|ref|XP_002278428.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 212/635 (33%), Positives = 323/635 (50%), Gaps = 39/635 (6%)

Query: 1    MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH-LLVIPDPFF 59
            ++AGV LK+WP   TFE    ISLM N+I  +P GLECPKL  L L  N  L + PD FF
Sbjct: 488  VKAGVGLKNWPKKGTFEHYALISLMANNISSLPVGLECPKLHTLLLGGNRGLKIFPDAFF 547

Query: 60   QGMKDLKVLDLGGIRM--------VSP-PSSLSFLSNLRTLRLDYCNHLPDLSLIGELSG 110
             GMK LKVLDL  I          ++P P+SL  L++LR L L +   L D+S++G+L  
Sbjct: 548  VGMKTLKVLDLTAISKKLYRYSLHITPLPASLQLLTDLRMLHLHH-RKLGDISILGKLKK 606

Query: 111  LEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH 170
            LEIL    S ++E+P   G L +L+LLDLT C +L+ IPP ++S L  LEELYM  SF  
Sbjct: 607  LEILSFFASHISELPKEMGELKNLKLLDLTYCRSLKKIPPNLISGLSALEELYMRGSFQQ 666

Query: 171  WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLN 230
            W        RS+A   EL +L  LT+LH++I   + +P+    PN   F I IG + +  
Sbjct: 667  WDVGGTTIERSSASLSELNSLLNLTTLHVEIINAKCIPNSFLFPNQLRFQIYIGSKLSFA 726

Query: 231  DFIELFLENFNKRCSRAM---GLSQDMRISALHSWIKNLLLRSEILALIEV-NDLENIFS 286
             F       ++   S+A+   G+   + I      +K L  R+E L+LI +     NI  
Sbjct: 727  TFTRKL--KYDYPTSKALELKGIDSPIPIG-----VKMLFERTEDLSLISLLEGSRNILP 779

Query: 287  NLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPA 346
            NL +  FN L  L +  C E +C++++ +    V    +E + +        +  G LP 
Sbjct: 780  NLGSRGFNGLTSLSVRNCVEFECIIDTTQGVHPVAFPNIETIHLTHLCGMKVLSSGTLPM 839

Query: 347  GCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETE 406
            G    ++ L V  CG +  + P+ L+Q  QNL+ + +  C+ +  VF+IE + + +E   
Sbjct: 840  GSFRKLRVLTVEQCGGLSTLFPADLLQLLQNLEIVQITCCQEMQDVFQIEGILVGEEHVL 899

Query: 407  LFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEM 466
              SSL +L L  LP++  +WKG    +SLHNL+ + +E C+ LR +F  ++ +     E 
Sbjct: 900  PLSSLRELKLDTLPQLEHLWKGFGAHLSLHNLEVIEIERCNRLRNLFQPSIAQSLFKLEY 959

Query: 467  VLYRNRRYQIHIHA--------TTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLV 518
            +   +      I A        +      + +L  L  + +  C KL++LF+ S  +S +
Sbjct: 960  LKIVDCMELQQIIAEDGLEQEVSNVEDKKSLNLPKLKVLEVEDCKKLKSLFSVSSAQSFL 1019

Query: 519  RLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHA 578
            +L+ L+VS    L+ II  + GE+    A+  K   P L +++L  L  L  F       
Sbjct: 1020 QLKQLKVSGSNELKAIISCECGEI---SAAVDKFVLPQLSNLELKALPVLESFCKGNF-- 1074

Query: 579  TVEFLALEALQIIDCPGMKTFGY----GNQLTPKL 609
              E+ +LE + +  CP M TF      G Q  PKL
Sbjct: 1075 PFEWPSLEEVVVDTCPRMTTFALAAADGVQNMPKL 1109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735461|emb|CBI17901.3| unnamed protein product [Vitis vinifera]

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 279/540 (51%), Gaps = 15/540 (2%)

Query: 1    MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH-LLVIPDPFF 59
            +++G  LK WP+ +++E  T ISLM N+I E+PDGL CPKLQ L LQ N+ +  IPD FF
Sbjct: 493  VQSGSALKVWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQTLLLQNNNDIQEIPDDFF 552

Query: 60   QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS 119
                 L+VLDL G  + S P SL  L +LRTL LD C  + D+S++G+L  LEIL L +S
Sbjct: 553  GSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITDISILGKLEKLEILSLRES 612

Query: 120  DVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE-ED 178
             + ++P    +L++LR+LD T   N++ IPP V+S L +LEE+YM  SF  W    E   
Sbjct: 613  YIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEEMYMQGSFADWGLLLEGTS 672

Query: 179  TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSL-PNLTSFSITIGEEDTLNDFIELFL 237
            + +NA F EL  L RL  L +DI   E MP  +   PN  +F I I  +     F+ + L
Sbjct: 673  SGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNFDICISRK-LFTRFMNVHL 731

Query: 238  ENFNKRCSRAMGLSQDMRISALHSWIKNLLL-RSEILALIEVNDLENIFSNLANDDFNEL 296
                   SRA+ L  D+ I+ L  W   +   R+E L  IE   L+NI         N L
Sbjct: 732  SRVTAARSRALIL--DVTINTLPDWFNKVATERTEKLYYIECRGLDNILMEYDQGSLNGL 789

Query: 297  MFLYIFGCNEMKCLLNSLERT-QRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRL 355
              L +  C+++  L++++     R     LE L +       EIC GQLP G L N+K L
Sbjct: 790  KILLVQSCHQIVHLMDAVTYVPNRPLFPSLEELRVHNLDYLKEICIGQLPPGSLGNMKFL 849

Query: 356  DVVGCGSMLK-ILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKL 414
             V  C  ++  +LP++L++  ++L+ L V S   L  +F  E +   +E   +   L +L
Sbjct: 850  QVEQCNELVNGLLPANLLRRLESLEVLDV-SGSYLEDIFRTEGL---REGEVVVGKLREL 905

Query: 415  TLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGK--KAAAEEMVLYRNR 472
             L +LP + +IW G TQ    HNLK + V +C +LR +F  ++ +  +   E  + Y N 
Sbjct: 906  KLDNLPELKNIWNGPTQLAIFHNLKILTVIKCKKLRNLFTYSVAQSLRYLEELWIEYCNG 965

Query: 473  RYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQ 532
               +                NL +++++    LR+ +          LE L V  CPT +
Sbjct: 966  LEGVIGMHEGGDVVERIIFQNLKNLSLQNLPVLRSFYEGDARIECPSLEQLHVQGCPTFR 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 205/607 (33%), Positives = 317/607 (52%), Gaps = 40/607 (6%)

Query: 6    ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQA-LFLQKNHLLVIPDPFFQGMKD 64
            E K+WP+ +  +  T ISL +  I ++P  LECP L + + L K+  L IPD FF+ MK+
Sbjct: 484  EFKEWPTSDVLQQYTAISLPYRKIPDLPAILECPNLNSFILLNKDPSLQIPDNFFREMKE 543

Query: 65   LKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124
            LKVLDL  + +   PSSL FL NL+TL LD C  L D+S++GEL  L++L L  SD+  +
Sbjct: 544  LKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCV-LEDISIVGELKKLKVLSLISSDIVCL 602

Query: 125  PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK 184
            P   G+L+ L LLDL++C  LE+I P VLS L +LEELYM +SF  W+ E     R+NA 
Sbjct: 603  PREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFVKWETEGSSSQRNNAC 662

Query: 185  FIELGALSRLTSLHIDIPKGEIMPSDMS--LPNLTSFSITIGEEDTLNDFIELFLENFNK 242
              EL  LS L +LH+ I   + M  D+S     L  F I IG+          +  +   
Sbjct: 663  LSELKRLSNLITLHMQITDADNMLKDLSFLFQKLERFRIFIGDG---------WDWSVKY 713

Query: 243  RCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIF 302
              SR + L  +  I  L  W+  LL  +E L L E+  +++I ++L  +DF  L  L++ 
Sbjct: 714  ATSRTLKLKLNTVIQ-LEEWVNTLLKSTEELHLQELKGVKSILNDLDGEDFPRLKHLHVQ 772

Query: 303  GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGS 362
             C  ++ ++NS+    R     L+ LF+    N  +ICHGQL A  L  ++ L V  C  
Sbjct: 773  NCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMAESLGKLRILKVESCHR 832

Query: 363  MLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN-IAKEETELFSSLEKLTLIDLPR 421
            +  +    + +    L+ + +  C+++  V   E  N  A  E   F+ L +LTL  LP 
Sbjct: 833  LKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFAQLRRLTLQCLP- 891

Query: 422  MTDIWKGDTQFVSLHNLKKVRVEECD-ELRQVFPAN-LGKKAAA-EEMVLYRN----RRY 474
                     QF S H+ ++ ++   D   +++   N LG   +     +L+ N    +  
Sbjct: 892  ---------QFTSFHSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPNLEDLKLS 942

Query: 475  QIHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQ 532
             I +        +   P + NL S+ +  C  L  L T+SMV+SL +LE LE+ +C +++
Sbjct: 943  SIKVEKIWHDQPAVQPPCVKNLASMVVESCSNLNYLLTSSMVESLAQLERLEICNCESME 1002

Query: 533  EIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIID 592
            EI++  EG +G +G    K+ FP L  ++L  L  LT F +S L   +E  +L+ L + +
Sbjct: 1003 EIVV-PEG-IG-EGKMMSKMLFPKLHLLELSGLPKLTRFCTSNL---LECHSLKVLMVGN 1056

Query: 593  CPGMKTF 599
            CP +K F
Sbjct: 1057 CPELKEF 1063

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832986|emb|CAN77367.1| hypothetical protein VITISV_010740 [Vitis vinifera]

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 185/540 (34%), Positives = 279/540 (51%), Gaps = 15/540 (2%)

Query: 1   MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH-LLVIPDPFF 59
           +++G  LK+WP+ +++E  T ISLM N+I E+PDGL CPKLQ L LQ N+ +  IPD FF
Sbjct: 402 VQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQTLLLQNNNDIQEIPDDFF 461

Query: 60  QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS 119
                L+VLDL G  + S P SL  L +LRTL LD C  + D+S++G+L  LEIL L +S
Sbjct: 462 GSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITDISILGKLEKLEILSLRES 521

Query: 120 DVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE-ED 178
            + ++P    +L++LR+LD T   N++ IPP V+S L +LEE+YM  SF  W    E   
Sbjct: 522 YIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEEMYMQGSFADWGLLLEGTS 581

Query: 179 TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSL-PNLTSFSITIGEEDTLNDFIELFL 237
           + +NA F EL  L RL  L +DI   E MP  +   PN  +F I I  +   N F+ + L
Sbjct: 582 SGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNFDICINRK-LFNRFMNVHL 640

Query: 238 ENFNKRCSRAMGLSQDMRISALHSWIKNLLL-RSEILALIEVNDLENIFSNLANDDFNEL 296
                  SR++ L  D+ I+ L  W   +   R+E L  I    L+NI         N L
Sbjct: 641 SRVTAARSRSLIL--DVTINTLPDWFNKVATERTEKLYYIXCRGLDNILMEYDQGSLNGL 698

Query: 297 MFLYIFGCNEMKCLLNSLERT-QRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRL 355
             L +  C+++  L++++     R     LE L +       EIC GQLP G L N+K L
Sbjct: 699 KILLVQXCHQIVHLMDAVTYVPNRPLFPSLEELRVHNLDYLKEICIGQLPPGSLGNMKFL 758

Query: 356 DVVGCGSMLK-ILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKL 414
            V  C  ++  + P++L++  ++L+ L V S   L  +F  E +   +E   +   L +L
Sbjct: 759 QVEQCNELVNGLXPANLLRRLESLEVLDV-SGSYLEDIFRTEGL---REGEVVVGKLREL 814

Query: 415 TLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGK--KAAAEEMVLYRNR 472
            L +LP + +IW G TQ    HNLK + V +C +LR +F  ++ +  +   E  + Y N 
Sbjct: 815 KLDNLPELKNIWXGPTQLAIFHNLKILTVIKCXKLRXLFTYSVAQSLRYLEELWIEYCNG 874

Query: 473 RYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQ 532
              +                NL +++++    LR+ +          LE L V  CPT +
Sbjct: 875 LEGVIGXHEGGDVVERIIFQNLKNLSLQNLPVLRSFYEGDARIECPSLEQLHVQGCPTFR 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445915|ref|XP_002263288.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 188/541 (34%), Positives = 282/541 (52%), Gaps = 17/541 (3%)

Query: 1    MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH-LLVIPDPFF 59
            +++G  LK+WP+ +++E  T ISLM N+I E+PDGL CPKLQ L LQ N+ +  IPD FF
Sbjct: 493  VQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQTLLLQNNNDIQEIPDDFF 552

Query: 60   QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS 119
                 L+VLDL G  + S P SL  L +LRTL LD C  + D+S++G+L  LEIL L +S
Sbjct: 553  GSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITDISILGKLEKLEILSLRES 612

Query: 120  DVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE-ED 178
             + ++P    +L++LR+LD T   N++ IPP V+S L +LEE+YM  SF  W    E   
Sbjct: 613  YIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEEMYMQGSFADWGLLLEGTS 672

Query: 179  TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSL-PNLTSFSITIGEEDTLNDFIELFL 237
            + +NA F EL  L RL  L +DI   E MP  +   PN  +F I I  +   N F+ + L
Sbjct: 673  SGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNFDICINRK-LFNRFMNVHL 731

Query: 238  ENFNKRCSRAMGLSQDMRISALHSWIKNLLL-RSEILALIEVNDLENIFSNLANDDFNEL 296
                   SR++ L  D+ I+ L  W   +   R+E L  I+   L+NI         N L
Sbjct: 732  SRVTAARSRSLIL--DVTINTLPDWFNKVATERTEKLYYIKCRGLDNILMEYDQGSLNGL 789

Query: 297  MFLYIFGCNEMKCLLNSLERT-QRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRL 355
              L +  C+++  L++++     R     LE L +       EIC GQLP G L N+K L
Sbjct: 790  KILLVQSCHQIVHLMDAVTYIPNRPLFPSLEELRVHNLDYLKEICIGQLPPGSLGNMKFL 849

Query: 356  DVVGCGSMLK-ILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKL 414
             V  C  ++  +LP++L++  ++L+ L V S   L  +F  E +   +E   +   L +L
Sbjct: 850  QVEQCNELVNGLLPANLLRRLESLEVLDV-SGSYLEDIFRTEGL---REGEVVVGKLREL 905

Query: 415  TLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGK--KAAAEEMVLYRNR 472
               +LP + +IW G TQ    HNLK + V +C +LR +F  ++ +  +   E  + Y N 
Sbjct: 906  KRDNLPELKNIWYGPTQLAIFHNLKILTVIKCRKLRILFTYSVAQSLRHLEELWIEYCNG 965

Query: 473  -RYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTL 531
                I IH             NL +++++    LR+ +          LE L V  CPT 
Sbjct: 966  LEGVIGIHEGGDVVERI-IFQNLKNLSLQNLPVLRSFYEGDARIECPSLEQLHVQGCPTF 1024

Query: 532  Q 532
            +
Sbjct: 1025 R 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 205/609 (33%), Positives = 318/609 (52%), Gaps = 44/609 (7%)

Query: 6    ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQA-LFLQKNHLLVIPDPFFQGMKD 64
            E K+WP+ +  +  T ISL F  I ++P  LECP L + L L  +  L IP+ FF+ MK+
Sbjct: 484  EFKEWPTNDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLSTDPSLQIPENFFREMKE 543

Query: 65   LKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124
            LKVLDL G+ +   PSSL FL NL+TL LD+C  L D+S++GEL  L++L L  SD+  +
Sbjct: 544  LKVLDLTGVNLSPLPSSLQFLENLQTLCLDFC-VLEDISIVGELKKLKVLSLMGSDIVCL 602

Query: 125  PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK 184
            P   G+L+ L LLDL++C  LE+I P VLS L +LEELYM +SF  W+ E     R++A 
Sbjct: 603  PREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFLKWEAEGPSSERNSAC 662

Query: 185  FIELGALSRLTSLHIDIPKGEIMPSDMSL--PNLTSFSITIGEEDTLNDFIELFLENFNK 242
              EL  L+ L +L + I   + MP D+ L    L  F I IG+          +  +   
Sbjct: 663  LSELKLLANLITLDMQITDADHMPKDLFLCFQKLERFRIFIGDG---------WDWSVKY 713

Query: 243  RCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIF 302
              SR + L  +  I  L   +  LL  +E L L E+N +++I ++L  + F +L  L++ 
Sbjct: 714  ATSRTLKLKLNTVIQ-LEERVNTLLKITEELHLQELNGVKSILNDLDEEGFCQLKDLHVQ 772

Query: 303  GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGS 362
             C  ++ ++NS+    R     L+ LF+    N  +ICHGQL A  L N++ L V  C  
Sbjct: 773  NCPGVQYIINSMRMGPRTAFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHR 832

Query: 363  MLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN-IAKEETELFSSLEKLTLIDLPR 421
            +  +    + +    L+ + +  C+++  V   E  N  A  E   F+ L +LTL  LP+
Sbjct: 833  LKNLFSVSIARRVVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFTQLRRLTLQCLPQ 892

Query: 422  MTDIWKGDTQFVSLHNLKKVRVEECDEL---------RQVFPANLGKKAAAEEMVLYRNR 472
             T       Q +   +++   +   +EL         + +FP         E+++L   +
Sbjct: 893  FTSFHSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFP-------KLEDLMLSSIK 945

Query: 473  RYQI--HIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPT 530
              +I    HA        P + NL SI +  C  L  L T+SMV+SL +L+SLE+ +C +
Sbjct: 946  VEKIWHDQHAVQP-----PCVKNLASIVVESCSNLNYLLTSSMVESLAQLKSLEICNCKS 1000

Query: 531  LQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQI 590
            ++EI++  EG +G +G    K+ FP L  + L  L  LT F +S L   +E  +L+ L +
Sbjct: 1001 MEEIVV-PEG-IG-EGKMMSKMLFPKLHILSLIRLPKLTRFCTSNL---LECHSLKVLTL 1054

Query: 591  IDCPGMKTF 599
              CP +K F
Sbjct: 1055 GKCPELKEF 1063

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 308/600 (51%), Gaps = 35/600 (5%)

Query: 7    LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFL-QKNHLLVIPDPFFQGMKDL 65
            L++WP  +  E  T ISL    I ++P+  ECP LQ+  L  K+  L IPD FF  MK L
Sbjct: 442  LEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLYNKDSSLKIPDNFFSRMKKL 501

Query: 66   KVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP 125
            K++DL  + +   P SL  L NL+TL LD C  L D++ IGEL  L++L    S + ++P
Sbjct: 502  KLMDLSNVHLSPMPLSLQCLENLQTLCLDRCT-LEDIAAIGELKKLQVLSFIGSTMVQLP 560

Query: 126  VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKF 185
               G+L+ L+LLDL+ C  LE+IP GVLS L KLEELYM +SF  W+ E  +  R+NA  
Sbjct: 561  REVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMGNSFVQWESEEHDGDRNNASL 620

Query: 186  IELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNK-RC 244
             EL  L  L +L + I   EI+P D+    L  + + IGEE +           F K   
Sbjct: 621  DELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIGEEWSW----------FGKYEA 670

Query: 245  SRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGC 304
            SR + L  +  I      +K LL+ +E L L E+  + N+   L    F +L  L+I   
Sbjct: 671  SRTLKLKLNSSIEI--EKVKVLLMTTEDLYLDELEGVRNVLYELDGQGFPQLKHLHIQNS 728

Query: 305  NEMKCLLNSLER-TQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSM 363
            +E++ +++ L      +   +LE L +    N  +IC+GQL +G  S +++L V  C ++
Sbjct: 729  SEIQYIVDCLSMGNHYIAFPRLESLLVDNLNNLGQICYGQLMSGSFSKLRKLKVEHCNAL 788

Query: 364  LKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIA-KEETELFSSLEKLTLIDLPRM 422
              +    + +    L+ + V SC ++  +   E  + + ++E      L  LTL  LPR 
Sbjct: 789  KNLFYFSMFRGLVQLEEIDVSSCNIMEEIVVEEIEDDSGRDEIIKPIRLRTLTLEYLPRF 848

Query: 423  TDIWKGDTQFVSLHNLKKVRVEE-CDELRQVFPANL-GKKAAAEEMV-LYRNRRYQIHIH 479
            T        F S    K   ++  C ++    P+ L G+K     ++ L  +    +   
Sbjct: 849  TS-------FCSQRMQKLAGLDAGCAQIISETPSVLFGQKIEFSNLLNLKLSSINNMEKI 901

Query: 480  ATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDE 539
                   P  S+ NL S+ + GCGKL  LFT+SMV++L +LE LE+S C  ++EII+ + 
Sbjct: 902  WRNQVKEPPSSVQNLTSLIVEGCGKLSYLFTSSMVENLSQLEYLEISDCSFMEEIIVAE- 960

Query: 540  GEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTF 599
               GL   ++ K+ FP L ++KL  L +L  F    L   +E  +L AL+I +CP +  F
Sbjct: 961  ---GLTKHNS-KLHFPILHTLKLKSLPNLIRFCFGNL---IECPSLNALRIENCPRLLKF 1013

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735460|emb|CBI17900.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 277/543 (51%), Gaps = 42/543 (7%)

Query: 1    MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH-LLVIPDPFF 59
            +++G  LK+WP+ +++E  T ISLM N+I E+PDGL CPKLQ L LQ N+ +  IPD FF
Sbjct: 493  VQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVCPKLQTLLLQNNNDIQEIPDDFF 552

Query: 60   QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS 119
                 L+VLDL G  + S P SL  L +LRTL LD C  + D+S++G+L  LEIL L +S
Sbjct: 553  GSFHSLRVLDLNGADIPSLPPSLGLLRSLRTLCLDCCQSITDISILGKLEKLEILSLRES 612

Query: 120  DVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE-ED 178
             + ++P    +L++LR+LD T   N++ IPP V+S L +LEE+YM  SF  W    E   
Sbjct: 613  YIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVISSLSRLEEMYMQGSFADWGLLLEGTS 672

Query: 179  TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSL-PNLTSFSITIGEEDTLNDFIELFL 237
            + +NA F EL  L RL  L +DI   E MP  +   PN  +F I I  +   N F+ + L
Sbjct: 673  SGANAGFDELTCLHRLNILKVDISDAECMPKTVRFDPNWVNFDICINRK-LFNRFMNVHL 731

Query: 238  ENFNKRCSRAMGLSQDMRISALHSWIKNLLL-RSEILALIEVNDLENIFSNLANDDFNEL 296
                   SR++ L  D+ I+ L  W   +   R+E L  I+   L+NI         N L
Sbjct: 732  SRVTAARSRSLIL--DVTINTLPDWFNKVATERTEKLYYIKCRGLDNILMEYDQGSLNGL 789

Query: 297  MFLYIFGCNEMKCLLNSLERT-QRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRL 355
              L +  C+++  L++++     R     LE L +       EIC GQLP G L N+K L
Sbjct: 790  KILLVQSCHQIVHLMDAVTYIPNRPLFPSLEELRVHNLDYLKEICIGQLPPGSLGNMKFL 849

Query: 356  DVVGCGSMLK-ILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKL 414
             V  C  ++  +LP++L++  ++L+ L V S   L  +F  E +   +E   +   L +L
Sbjct: 850  QVEQCNELVNGLLPANLLRRLESLEVLDV-SGSYLEDIFRTEGL---REGEVVVGKLREL 905

Query: 415  TLIDLPRMTDIWKGDTQFV-----SLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLY 469
               +LP + +IWK    F      SL +L+++ +E C+ L  V   + G      E +++
Sbjct: 906  KRDNLPELKNIWKLRILFTYSVAQSLRHLEELWIEYCNGLEGVIGIHEGGDVV--ERIIF 963

Query: 470  RNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCP 529
            +                      NL +++++    LR+ +          LE L V  CP
Sbjct: 964  Q----------------------NLKNLSLQNLPVLRSFYEGDARIECPSLEQLHVQGCP 1001

Query: 530  TLQ 532
            T +
Sbjct: 1002 TFR 1004

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  242 bits (617), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 202/695 (29%), Positives = 317/695 (45%), Gaps = 114/695 (16%)

Query: 2    RAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQAL--FLQKNHLLVIPDPFF 59
            +  V +++W  I+  + +T + L   DIHE+P+GL CPKL+    FL+ N  + IP+ FF
Sbjct: 487  KTTVRVEEWSRIDELQ-VTWVKLHHCDIHELPEGLVCPKLEFFECFLKTNLAVKIPNTFF 545

Query: 60   QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS 119
            +GMK LKVLDL G+++ S P SL  L+NLRTL LD C  L D+ +I EL  LEIL L  S
Sbjct: 546  EGMKQLKVLDLTGMQLPSLPLSLQSLANLRTLCLDGCK-LGDIVIIAELKKLEILSLMDS 604

Query: 120  DVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDT 179
            D+ ++P    +L+HLRL DL   + L++IP  V+S L +LE+L M +SF  W+ E     
Sbjct: 605  DIEQLPREIAQLTHLRLFDLKSSFKLKVIPSDVISSLFRLEDLCMENSFTQWEGEG---- 660

Query: 180  RSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLEN 239
            +SNA   EL  LS LT+L I IP  +++P DM   NL  + I +G         ++++  
Sbjct: 661  KSNACLAELKHLSHLTALDIQIPDAKLLPKDMVFDNLMRYRIFVG---------DIWIWE 711

Query: 240  FNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFL 299
             N + +R + L++      L   I  LL R+E L L E+    N+ S L  + F +L  L
Sbjct: 712  KNYKTNRILKLNKFDTSLHLVDGISKLLKRTEDLHLRELCGGTNVLSKLNREGFLKLKHL 771

Query: 300  YIFGCNEMKCLLNSLERT-QRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVV 358
             +    E++ ++NS++ T        +E L + +  N  E+CHGQ PAG    +++++V 
Sbjct: 772  NVESSPEIQYIVNSMDLTSSHAAFPVMETLSLNQLINLQEVCHGQFPAGSFGCLRKVEVE 831

Query: 359  GCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETE--LFSSLEKLTL 416
             C  +  +    + +    L+   V  C+ +V +    R  I ++     LF  L  LTL
Sbjct: 832  DCDGLKFLFSLSVARGLSRLEETKVTRCKSMVEMVSQGRKEIKEDAVNVPLFPELRSLTL 891

Query: 417  IDLPRMT----------------------------DIWKGDTQFVSLHNLKKVRVEECDE 448
             DLP+++                            +I  G        NL+ ++++ C  
Sbjct: 892  KDLPKLSNFCFEENPVLSKPASTIVGPSTPPLNQPEIRDGQLLLSLGGNLRSLKLKNCMS 951

Query: 449  LRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNL 508
            L ++FP +L                                 L NL  +T++ C KL  +
Sbjct: 952  LLKLFPPSL---------------------------------LQNLQELTLKDCDKLEQV 978

Query: 509  F-------TTSMVKSLVRLESLEVSSCPTLQEII----MDDEGEVGLQGASTKKITFPSL 557
            F           V+ L +L+ L +   P L+ I       +     +  A    I FP L
Sbjct: 979  FDLEELNVDDGHVELLPKLKELRLIGLPKLRHICNCGSSRNHFPSSMASAPVGNIIFPKL 1038

Query: 558  FSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGY 617
              I L  L +LT F S G H+       +    +D P +  F           + V F  
Sbjct: 1039 SDITLESLPNLTSFVSPGYHSLQRLHHAD----LDTPFLVLFD----------ERVAFPS 1084

Query: 618  CKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSGISS 652
             K+     L+        N KKIW  Q  ++  S+
Sbjct: 1085 LKFLIISGLD--------NVKKIWHNQIPQNSFSN 1111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.666	0.476	0.268	1.1e-22
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.637	0.425	0.260	2.3e-18
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.240	0.177	0.345	4.5e-12
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.240	0.178	0.343	4.2e-10
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.203	0.149	0.358	5.3e-10
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.441	0.319	0.254	8.9e-08
ZFIN|ZDB-GENE-080917-20	994	mfhas1 "malignant fibrous hist	0.232	0.153	0.306	1e-07
FB|FBgn0038504	641	Sur-8 "Sur-8" [Drosophila mela	0.598	0.613	0.25	1.5e-07
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.248	0.182	0.323	1.7e-07
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.094	0.043	0.397	3.1e-07

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 125/466 (26%), Positives = 203/466 (43%)

Query:     3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDG-LECPKLQALFLQKN-HLLVIPDPFFQ 60
             AG  L ++P       +  +SLM N +  +P+  +E  +   L LQ N H+  +P+ F Q
Sbjct:   456 AGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQ 515

Query:    61 GMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSD 120
                +L++LDL G+R+           +LR+L L  C  L +L  +  L  L+ LDL +S 
Sbjct:   516 AFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESA 575

Query:   121 VNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTR 180
             + E+P     LS LR + +++ Y L+ IP G + +L  LE L M+ S   W  + EE   
Sbjct:   576 IRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWGIKGEE-RE 634

Query:   181 SNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENF 240
               A   E+  L  L  L I +   +++       +LT   +T   +   +    +     
Sbjct:   635 GQATLDEVTCLPHLQFLAIKLL--DVLSFSYEFDSLTK-RLT-KFQFLFSPIRSVSPPGT 690

Query:   241 NKRCSRAMGLSQDMRIS-ALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFL 299
              + C   + +S D+ +S A   W   LL     L L     L  +F NL     +  + +
Sbjct:   691 GEGC---LAIS-DVNVSNASIGW---LLQHVTSLDLNYCEGLNGMFENLVTKSKSSFVAM 743

Query:   300 YIFGCNEMKCL-LNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPA--GC-LSNVKRL 355
                  +    L L S   +Q      LE L + +N N   I  G+L    G  L  +K L
Sbjct:   744 KALSIHYFPSLSLASGCESQLDLFPNLEELSL-DNVNLESI--GELNGFLGMRLQKLKLL 800

Query:   356 DVVGCGSMLKILPSHLVQ-SFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKL 414
              V GC  + ++    ++  +  NLQ + V SC  L  +F    V +   +    S L KL
Sbjct:   801 QVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPV---DFCAESLLPKL 857

Query:   415 TLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV--FPANLG 458
             T+I L  +  +       V L +L+ + VE C+ L+ +   P N G
Sbjct:   858 TVIKLKYLPQLRSLCNDRVVLESLEHLEVESCESLKNLPFVPGNTG 903

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 122/469 (26%), Positives = 198/469 (42%)

Query:     3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLE--CPKLQALFLQKNHLLV-IPDPFF 59
             +G  L+D         L  +SLM N +  +PD +E  C K   L LQ N LL  +P  F 
Sbjct:   487 SGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFL 546

Query:    60 QGMKDLKVLDLGGIRMVXXXX-XXXXXXNLRTLRLDYCNHLPDLSLIGELSGLEILDLSK 118
             Q    L++L+L G R+            +L +L L  C  L  L  +  L+ LE+LDL  
Sbjct:   547 QAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCG 606

Query:   119 SDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEED 178
             + + E P     L   R LDL+   +LE IP  V+SRL  LE L M+ S   W  + E  
Sbjct:   607 THILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWSVQGETQ 666

Query:   179 TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMS--LPNLTSFSITIGEEDTLNDFIELF 236
              +  A   E+G L RL  L I +     + +  +  +  L  F + +G    L       
Sbjct:   667 -KGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYILR------ 719

Query:   237 LENFNKRCSRAMGLSQDMRISALH-SWIKNLLLRSEILALIEVNDLENIFSNLANDD--F 293
                  +   R + +S  + +S +   W   LL  +  LAL     +E +   L +D+  F
Sbjct:   720 ----TRHDKRRLTISH-LNVSQVSIGW---LLAYTTSLALNHCQGIEAMMKKLVSDNKGF 771

Query:   294 NELMFL----YIFGCNEMKCLL--NSLERTQRVT--LRKLEWLFIR--ENQNFVEICHGQ 343
               L  L     I   N    ++  N+ +++  +   L  LE L +R  + + F E+   Q
Sbjct:   772 KNLKSLTIENVIINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRRVDLETFSEL---Q 828

Query:   344 LPAGC-LSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAK 402
                G  L  +K +++  C  +  +L      +  NL+ + +  C+ L ++ E    +   
Sbjct:   829 THLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQNLHEALLYH--- 885

Query:   403 EETELFSSLEKLTLIDLPRMTDI--WKGDTQFVSLHNLKKVRVEECDEL 449
                    +L  L L +LP +  I  W G+        L++V V  C++L
Sbjct:   886 --QPFVPNLRVLKLRNLPNLVSICNW-GEVW----ECLEQVEVIHCNQL 927

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
 Identities = 57/165 (34%), Positives = 80/165 (48%)

Query:     1 MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ 60
             +RAGV L++ P +  +  +  ISLM N+I E+ D  EC  L  LFLQKN ++ I   FF+
Sbjct:   501 VRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFR 560

Query:    61 GMKDLKVLDLGGIRMVXXX-XXXXXXXNLRTLRLDY-CNHLPDLSLIGELSGLEILDLSK 118
              M  L VLDL   + +           +LR   L Y C H   + L   L  L  L+L  
Sbjct:   561 CMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGL-WTLKKLIHLNLEH 619

Query:   119 -SDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL 162
              S +  I +    L +LR L L D   L L+   ++  L+ LE L
Sbjct:   620 MSSLGSI-LGISNLWNLRTLGLRDS-RL-LLDMSLVKELQLLEHL 661

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 58/169 (34%), Positives = 82/169 (48%)

Query:     1 MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKN-HLLVIPDPFF 59
             +RAG  L + P +  ++ ++ +SL+ N I E+    ECPKL  LFLQ N HL+ I   FF
Sbjct:   502 VRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTTLFLQDNRHLVNISGEFF 561

Query:    60 QGMKDLKVLDLG-GIRMVXXXXXXXXXXNLRTLRLDYCN--HLPDLSLIGELSGLEILDL 116
             + M  L VLDL   + +           +LR L L Y +   LP + L+ +L  L  L+L
Sbjct:   562 RSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRLP-VGLL-KLKKLMHLNL 619

Query:   117 SKSDVNEIPVSFGRLSHL---RLLDLTDCYNLELIPPGVLSRLRKLEEL 162
                   E       LS+L   RLL+L     + L+    L RL  LE L
Sbjct:   620 ESMLCLESVSGIDHLSNLKTVRLLNLRMWLTISLLEE--LERLENLEVL 666

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 52/145 (35%), Positives = 72/145 (49%)

Query:     1 MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ 60
             ++AGV L + P +  +  +  +SLM NDI E+    +C +L  LFLQ N L  +P  F +
Sbjct:   495 VQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIR 554

Query:    61 GMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLR-LDYCN----HLPDLSLIGELSGLEILD 115
              M+ L VLDL   R             L +L+ LD  N    H+P + L  EL  L  LD
Sbjct:   555 YMQKLVVLDLSYNR--DFNKLPEQISGLVSLQFLDLSNTSIEHMP-IGL-KELKKLTFLD 610

Query:   116 LSKSDVNEIPVS-FGRLSHLRLLDL 139
             L+ +D     +S   RL  LRLL L
Sbjct:   611 LTYTD-RLCSISGISRLLSLRLLRL 634

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 8.9e-08, P = 8.9e-08
 Identities = 79/311 (25%), Positives = 134/311 (43%)

Query:    88 LRTLRLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLE 146
             LR L L + + + ++ L I  L  L  L +S + ++ +P   G L  L+ LDL     L+
Sbjct:   560 LRVLDLSFTS-ITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQ 618

Query:   147 LIPPGVLSRLRKLEELYMSHSFCHWQFES-EEDTRSNAKFIELGALSRLTSLHIDIPKGE 205
              IP   +  L KLE L + +S+  W+ +S  ED      F +L  L  LT+L I +   E
Sbjct:   619 TIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLE 678

Query:   206 IMPSDMSLPNLTSF--SITIGEEDTLNDFIELFLENFNKRCSR-AMGLSQDMRISALHSW 262
              + +      L      + + E + L  F    L N  +   R ++    D+      + 
Sbjct:   679 TLKTLFEFGALHKHIQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPAD 738

Query:   263 IKNLLLRS-EILALIEVNDLENIFSNLANDD-FNELMFLYIFGCNEMKCL-----LNSLE 315
              +N  L S E+L L  +++L  ++ N  + D    +  + I  CN++K +     L  LE
Sbjct:   739 FENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNVSWVQKLPKLE 798

Query:   316 RTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSF 375
               +    R++E L        VE      P     ++K L       +  ILPS    SF
Sbjct:   799 VIELFDCREIEELISEHESPSVED-----PT-LFPSLKTLRTRDLPELNSILPSRF--SF 850

Query:   376 QNLQRLMVESC 386
             Q ++ L++ +C
Sbjct:   851 QKVETLVITNC 861

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

ZFIN|ZDB-GENE-080917-20 mfhas1 "malignant fibrous histiocytoma amplified sequence 1" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 49/160 (30%), Positives = 79/160 (49%)

Query:    11 PS-INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
             PS I T + L  + + FN++H+ P    +  KL+ L +  N L   P      + DL+ L
Sbjct:   135 PSQIGTLQSLEELDISFNELHDFPRSFSQLRKLRTLDVDHNKLQRFPSEIL-ALSDLEEL 193

Query:    69 DLGGIRMVXXXXXXXXXXNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS 127
             D  G ++           +++ L L    HL  L     EL  LE L L  + +  +P S
Sbjct:   194 DCSGNKLEGLPGNIMMLQSIKILWLS-STHLLSLPETFCELQNLESLMLDNNFLTRLPQS 252

Query:   128 FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
             FG+L  L++L+L+   + E  P  V+ +L +LEELY+S +
Sbjct:   253 FGKLQKLKMLNLSS-NSFEDFPQ-VIIKLTRLEELYLSRN 290

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0038504 Sur-8 "Sur-8" [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 109/436 (25%), Positives = 189/436 (43%)

Query:    11 PSINTFEDLTGISLMFNDIHEVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
             P I     L  ++L  N +  +P+ L+ C +L+ L L+ N L  IP P    ++ L  L 
Sbjct:   200 PEIGCLVSLRNLALNENSLTSLPESLQNCSQLKVLDLRHNKLAEIP-PVIYRLRSLTTLY 258

Query:    70 LGGIRMVXXXXXXXXXXNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVSF 128
             L   R+           NL  L L   N + +L S IG L  L  LD+S + +  +P   
Sbjct:   259 LRFNRITAVADDLRQLVNLTMLSLRE-NKIRELGSAIGALVNLTTLDVSHNHLEHLPEDI 317

Query:   129 GRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKF-IE 187
             G   +L  LDL   +N  L  P  +  L+ L  L M ++       + ++ +S  +F +E
Sbjct:   318 GNCVNLSALDLQ--HNELLDIPDSIGNLKSLVRLGMRYNRLSSVPATLKNCKSMDEFNVE 375

Query:   188 LGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDF-IELFLENFNKR--- 243
                +++L    +    G +    +S     S+  T G     N + I L     +K    
Sbjct:   376 GNGITQLPDGMLASLSG-LTTITLSRNQFASYP-TGGPAQFTNVYSINLEHNRIDKIPYG 433

Query:   244 -CSRAMGLSQ-DMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFN-ELMFLY 300
               SRA GL++ +M+ + L +   ++      + ++E+N   N    L +D  N + + + 
Sbjct:   434 IFSRAKGLTKLNMKENMLTALPLDI---GTWVNMVELNLATNALQKLPDDIMNLQNLEIL 490

Query:   301 IFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGC 360
             I   N +K + N++       LRKL  L + EN+  +E+   ++  G L  ++RL +   
Sbjct:   491 ILSNNMLKKIPNTIGN-----LRKLRILDLEENR--IEVLPHEI--GLLHELQRLILQT- 540

Query:   361 GSMLKILP---------SHLVQSFQNLQRLMVE--SCELLVSVFEIERVNIAKE--ETEL 407
              + + +LP         +HL  S  NLQ L  E  S E L +++  +   + K   E  L
Sbjct:   541 -NQITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELAL 599

Query:   408 FSSLEKLTLIDLPRMT 423
               +L+ L +   P  T
Sbjct:   600 CQNLKYLNIDKCPLST 615

GO:0017016 "Ras GTPase binding" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 55/170 (32%), Positives = 77/170 (45%)

Query:     1 MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH-LLVIPDPFF 59
             ++ GV L++ P +  +  +  +SLM N+I  +    EC +L  LFLQKN  LL I D FF
Sbjct:   500 VQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFF 559

Query:    60 QGMKDLKVLDLGGIRMVXXX-XXXXXXXNLRTLRLD--YCNHLPDLSLIGELSGLEILDL 116
             + +  L VLDL G   +           +LR L L   Y   LP + L  EL  L  L L
Sbjct:   560 RCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLP-VGL-QELKKLRYLRL 617

Query:   117 SKSDVNEIPVSFGRLSHLRLLDLTDC-YNLELIPPGVLSRLRKLEELYMS 165
                   +       +S LR L L     +L++     L  L  LE L +S
Sbjct:   618 DYMKRLKSISGISNISSLRKLQLLQSKMSLDMSLVEELQLLEHLEVLNIS 667

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query:   554 FPSLFSIKLCDLGSLTCFSSSGLHATV--EFLALEALQIIDCPGMKTFGYGNQLTPKLLK 611
             FP L S+ + D  S   FS   +HA +  + +ALE+L+I DCP ++TF  G   TPKL  
Sbjct:  1187 FPKLRSLSIRDCESFKTFS---IHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKL-S 1242

Query:   612 GVEFGYCK 619
              +    CK
Sbjct:  1243 SMLLSNCK 1250

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027341001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (963 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	657
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 110 GLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
            L+ LDLS + +  IP  +F  L +L++LDL+   NL  I P   S L  L  L +S 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 7e-07
 Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 14/241 (5%)

Query: 12  SINTFEDLTGISLM-----FNDIHEVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            I     L   +L       N I  +P  L   P L+ L L  N L  +P      + +L
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNL 188

Query: 66  KVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP 125
             LDL G ++   P  +  LS L  L L   + +  LS +  L  L  L+LS + + ++P
Sbjct: 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP 248

Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLE-------ELYMSHSFCHWQFESEED 178
            S G LS+L  LDL++     +   G L+ LR+L+             +      E   +
Sbjct: 249 ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 179 TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLE 238
                K +EL   S L + +I        P  +S+    +   T+      ++     ++
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVK 368

Query: 239 N 239
           N
Sbjct: 369 N 369

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLRLDYCN 97
           L++L L  N L VIPD  F+G+ +LKVLDL G  + S  P + S L +LR+L L   N
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 17/143 (11%)

Query: 37  ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRL- 93
           + P LQ L L +N     +PD F  G K L+ LDL   +     P  L  LS L  L+L 
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 94  --DYCNHLPDLSLIGELSG---LEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLEL 147
                  +PD     ELS    L  LDLS + ++ +IP SF  +  L  LDL+    L  
Sbjct: 508 ENKLSGEIPD-----ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS-QNQLSG 561

Query: 148 IPPGVLSRLRKLEELYMSHSFCH 170
             P  L  +  L ++ +SH+  H
Sbjct: 562 EIPKNLGNVESLVQVNISHNHLH 584

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	657
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG4341	483	consensus F-box protein containing LRR [General fu	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.41
KOG4341	483	consensus F-box protein containing LRR [General fu	99.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.59
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
PRK15386	426	type III secretion protein GogB; Provisional	98.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.54
PRK15386	426	type III secretion protein GogB; Provisional	98.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
PLN03150	623	hypothetical protein; Provisional	98.36
PLN03150	623	hypothetical protein; Provisional	98.35
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.81
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.21
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.67
smart00370	26	LRR Leucine-rich repeats, outliers.	90.67
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.71
smart00370	26	LRR Leucine-rich repeats, outliers.	88.71
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.4
KOG4308	478	consensus LRR-containing protein [Function unknown	82.31

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.4e-37  Score=355.19  Aligned_cols=513  Identities=19%  Similarity=0.209  Sum_probs=369.8

Q ss_pred             CCCccEEEccCCCccc-cCCCC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCcEE
Q 006185           16 FEDLTGISLMFNDIHE-VPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLRTL   91 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L   91 (657)
                      ..+++.|++++|.++. ++..+ .+++|++|++++|.+. .+|..+|..+++||+|++++|++. .+|.  +.+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            3578899999998874 44444 8899999999999987 789888889999999999999885 4554  568899999


Q ss_pred             EccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185           92 RLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus        92 ~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      ++++|... ..|..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence            99999844 45788999999999999999876 78888999999999999997776777876 89999999999998865


Q ss_pred             ccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhccc-ccCcc
Q 006185          170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFN-KRCSR  246 (657)
Q Consensus       170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~  246 (657)
                      ..           ..+..++++++|++|++++|... .+|.. ..+++|+.|++.++..      .+.++..+. ...++
T Consensus       225 ~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l------~~~~p~~l~~l~~L~  287 (968)
T PLN00113        225 SG-----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL------SGPIPPSIFSLQKLI  287 (968)
T ss_pred             CC-----------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee------eccCchhHhhccCcC
Confidence            42           56777889999999999998864 45544 6788999999886632      222233332 36788


Q ss_pred             eEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccccccccccccc
Q 006185          247 AMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLE  326 (657)
Q Consensus       247 ~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~  326 (657)
                      .+++++|.-...+|.++... ++|+.|++.++.-....+..+  ..+++|+.|++++|.-...++..     ...+++|+
T Consensus       288 ~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~-----l~~~~~L~  359 (968)
T PLN00113        288 SLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKN-----LGKHNNLT  359 (968)
T ss_pred             EEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChH-----HhCCCCCc
Confidence            88888875555677776665 889999998774322222222  34788999999888433333332     23478899


Q ss_pred             EEeccccccccccccccCCCC--CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccc
Q 006185          327 WLFIRENQNFVEICHGQLPAG--CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEE  404 (657)
Q Consensus       327 ~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  404 (657)
                      .|+++++.     ..+..|..  .+++|+.|+++++. +....|..+ ..+++|+.|++++|.--..+         |..
T Consensus       360 ~L~Ls~n~-----l~~~~p~~~~~~~~L~~L~l~~n~-l~~~~p~~~-~~~~~L~~L~L~~n~l~~~~---------p~~  423 (968)
T PLN00113        360 VLDLSTNN-----LTGEIPEGLCSSGNLFKLILFSNS-LEGEIPKSL-GACRSLRRVRLQDNSFSGEL---------PSE  423 (968)
T ss_pred             EEECCCCe-----eEeeCChhHhCcCCCCEEECcCCE-ecccCCHHH-hCCCCCCEEECcCCEeeeEC---------Chh
Confidence            99998875     22233332  56788999998854 444455544 67889999999886533222         555


Q ss_pred             cccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccC
Q 006185          405 TELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTST  484 (657)
Q Consensus       405 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~  484 (657)
                      +..+++|+.|+++++. ++...  +.....+++|++|++++|.-...+ |..+ ..++|+.|+++++       .+....
T Consensus       424 ~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~-p~~~-~~~~L~~L~ls~n-------~l~~~~  491 (968)
T PLN00113        424 FTKLPLVYFLDISNNN-LQGRI--NSRKWDMPSLQMLSLARNKFFGGL-PDSF-GSKRLENLDLSRN-------QFSGAV  491 (968)
T ss_pred             HhcCCCCCEEECcCCc-ccCcc--ChhhccCCCCcEEECcCceeeeec-Cccc-ccccceEEECcCC-------ccCCcc
Confidence            6778889999998865 33221  122234788999999998654433 4433 3477888888764       233344


Q ss_pred             CCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCc
Q 006185          485 SSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCD  564 (657)
Q Consensus       485 ~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~  564 (657)
                      |..+..+++|+.|++++|.-...+ |.. ...+++|++|++++|.--..++             .....+++|+.|++++
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~-p~~-~~~l~~L~~L~Ls~N~l~~~~p-------------~~~~~l~~L~~L~Ls~  556 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEI-PDE-LSSCKKLVSLDLSHNQLSGQIP-------------ASFSEMPVLSQLDLSQ  556 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeC-ChH-HcCccCCCEEECCCCcccccCC-------------hhHhCcccCCEEECCC
Confidence            566778888999999887543333 333 4678899999998886433332             2223578899999999


Q ss_pred             CCCccccccCCCcceeeccccceeeeccCCCcceecCCC
Q 006185          565 LGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGN  603 (657)
Q Consensus       565 c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~  603 (657)
                      +.-...+| ....   .+++|+.|++++|+-...+|...
T Consensus       557 N~l~~~~p-~~l~---~l~~L~~l~ls~N~l~~~~p~~~  591 (968)
T PLN00113        557 NQLSGEIP-KNLG---NVESLVQVNISHNHLHGSLPSTG  591 (968)
T ss_pred             CcccccCC-hhHh---cCcccCEEeccCCcceeeCCCcc
Confidence            87666777 6666   57899999999998777777543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.4e-36  Score=347.45  Aligned_cols=508  Identities=20%  Similarity=0.213  Sum_probs=387.2

Q ss_pred             CCCCCCCccEEEccCCCcc-ccCCCC--CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCC
Q 006185           12 SINTFEDLTGISLMFNDIH-EVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLS   86 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~   86 (657)
                      .+..+++|++|++++|.++ .+|...  .+++||+|++++|.+. .+|.   +.+++|++|++++|.+. .+|..+++++
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence            4778999999999999987 788765  8999999999999987 5554   56899999999999986 6899999999


Q ss_pred             CCcEEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           87 NLRTLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        87 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                      +|++|++++|... ..|..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence            9999999999844 46789999999999999999887 78999999999999999997766678877 899999999999


Q ss_pred             ccCccccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcc-c
Q 006185          165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENF-N  241 (657)
Q Consensus       165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~  241 (657)
                      ++|.+..           ..+..++++++|+.|++++|.+. .+|.. ..+++|+.|+++++.      +.+.+++.+ .
T Consensus       244 ~~n~l~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~------l~~~~p~~~~~  306 (968)
T PLN00113        244 VYNNLTG-----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS------LSGEIPELVIQ  306 (968)
T ss_pred             cCceecc-----------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe------eccCCChhHcC
Confidence            9986542           56778999999999999999873 45544 678999999998763      222233333 3


Q ss_pred             ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccc
Q 006185          242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVT  321 (657)
Q Consensus       242 ~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  321 (657)
                      .+.++.+++.++.-...+|.++..+ ++|+.|++.+|.-....+..+  ..+++|+.|++++|.-...++...     ..
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~-----~~  378 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGL-----CS  378 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhH-----hC
Confidence            4789999999886666677777665 999999999885332333223  347999999999994333333332     34


Q ss_pred             cccccEEeccccccccccccccCCC--CCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185          322 LRKLEWLFIRENQNFVEICHGQLPA--GCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN  399 (657)
Q Consensus       322 ~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  399 (657)
                      +++|+.|+++++.     ..+.+|.  +.+++|+.|++++|. ++...|..+ ..+++|+.|+++++.-...+       
T Consensus       379 ~~~L~~L~l~~n~-----l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-------  444 (968)
T PLN00113        379 SGNLFKLILFSNS-----LEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEF-TKLPLVYFLDISNNNLQGRI-------  444 (968)
T ss_pred             cCCCCEEECcCCE-----ecccCCHHHhCCCCCCEEECcCCE-eeeECChhH-hcCCCCCEEECcCCcccCcc-------
Confidence            7899999999886     2333333  378999999999975 444456544 68999999999986432222       


Q ss_pred             ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeec
Q 006185          400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIH  479 (657)
Q Consensus       400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~  479 (657)
                        +.....+++|+.|++++|.-...++.    ....++|+.|++++|. +....|..+..+++|++|+++++       .
T Consensus       445 --~~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-------~  510 (968)
T PLN00113        445 --NSRKWDMPSLQMLSLARNKFFGGLPD----SFGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSEN-------K  510 (968)
T ss_pred             --ChhhccCCCCcEEECcCceeeeecCc----ccccccceEEECcCCc-cCCccChhhhhhhccCEEECcCC-------c
Confidence              34456789999999999875554432    1235889999999974 55566888999999999999985       3


Q ss_pred             ccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCe
Q 006185          480 ATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFS  559 (657)
Q Consensus       480 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~  559 (657)
                      +....|..+..+++|+.|++++|.-...+ +.. +..+++|+.|++++|.-...+|             .....+++|+.
T Consensus       511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~-~~~l~~L~~L~Ls~N~l~~~~p-------------~~l~~l~~L~~  575 (968)
T PLN00113        511 LSGEIPDELSSCKKLVSLDLSHNQLSGQI-PAS-FSEMPVLSQLDLSQNQLSGEIP-------------KNLGNVESLVQ  575 (968)
T ss_pred             ceeeCChHHcCccCCCEEECCCCcccccC-Chh-HhCcccCCEEECCCCcccccCC-------------hhHhcCcccCE
Confidence            33344667788999999999998644333 333 5789999999999997554443             22335789999


Q ss_pred             eEcCcCCCccccccCCCcceeeccccceeeeccCCCc
Q 006185          560 IKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGM  596 (657)
Q Consensus       560 L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l  596 (657)
                      |++++++-...+| ....    +.++....+.+.+.+
T Consensus       576 l~ls~N~l~~~~p-~~~~----~~~~~~~~~~~n~~l  607 (968)
T PLN00113        576 VNISHNHLHGSLP-STGA----FLAINASAVAGNIDL  607 (968)
T ss_pred             EeccCCcceeeCC-Ccch----hcccChhhhcCCccc
Confidence            9999998777787 4433    345555555555544

>PLN03210 Resistant to P

Probab=99.93  E-value=7.6e-25  Score=254.15  Aligned_cols=347  Identities=24%  Similarity=0.341  Sum_probs=252.9

Q ss_pred             CCCCCCCccEEEccCCCc------c-ccCCCC-CC-CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185           12 SINTFEDLTGISLMFNDI------H-EVPDGL-EC-PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~------~-~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      ++..+++|+.|.+..+..      . .+|..+ .+ .+||.|.+.++.+..+|..+  ...+|++|++.++.+..+|..+
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccccc
Confidence            367899999998876532      1 456655 33 47999999999988999864  6799999999999999999999


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCC-CCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcE
Q 006185           83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSD-VNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEE  161 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~  161 (657)
                      ..+++|++|+++++..++.+..++.+++|++|++++|. +..+|..++++++|++|++++|..++.+|..  .++++|+.
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCE
Confidence            99999999999998766666678999999999999984 7799999999999999999999999999985  38999999


Q ss_pred             EEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccc
Q 006185          162 LYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFN  241 (657)
Q Consensus       162 L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (657)
                      |++++|....           ..+.   ...+|+.|+++++.+..+|....+++|+.|.+..+......   +       
T Consensus       709 L~Lsgc~~L~-----------~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~---~-------  764 (1153)
T PLN03210        709 LNLSGCSRLK-----------SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW---E-------  764 (1153)
T ss_pred             EeCCCCCCcc-----------cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhcc---c-------
Confidence            9999985321           2221   24688999999999888888777888888887653211100   0       


Q ss_pred             ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccc
Q 006185          242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVT  321 (657)
Q Consensus       242 ~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  321 (657)
                                   .+..++.......++|+.|++++|..+..++..+  ..+++|+.|++++|..++.+|...      .
T Consensus       765 -------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~------~  823 (1153)
T PLN03210        765 -------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI------N  823 (1153)
T ss_pred             -------------cccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC------C
Confidence                         0000111111222677777777776555544333  247778888888777777666543      2


Q ss_pred             cccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccc
Q 006185          322 LRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIA  401 (657)
Q Consensus       322 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  401 (657)
                      +++|+.|++++|..+..+     | ...++|+.|++++ ..++. +|..+ ..+++|+.|++++|++++.+         
T Consensus       824 L~sL~~L~Ls~c~~L~~~-----p-~~~~nL~~L~Ls~-n~i~~-iP~si-~~l~~L~~L~L~~C~~L~~l---------  885 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTF-----P-DISTNISDLNLSR-TGIEE-VPWWI-EKFSNLSFLDMNGCNNLQRV---------  885 (1153)
T ss_pred             ccccCEEECCCCCccccc-----c-ccccccCEeECCC-CCCcc-ChHHH-hcCCCCCEEECCCCCCcCcc---------
Confidence            677888888887765432     1 1246778888777 45555 45443 56788888888888877766         


Q ss_pred             ccccccCCcccEEecCCCcCcccc
Q 006185          402 KEETELFSSLEKLTLIDLPRMTDI  425 (657)
Q Consensus       402 ~~~~~~~~~L~~L~l~~c~~L~~l  425 (657)
                      +.....+++|+.+.+++|++|+.+
T Consensus       886 ~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CcccccccCCCeeecCCCcccccc
Confidence            444566777888888888877754

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.93  E-value=2.3e-24  Score=250.21  Aligned_cols=348  Identities=23%  Similarity=0.293  Sum_probs=213.8

Q ss_pred             CCCchhhcCCCCccEEEecCCcC-------CCCCccccCCC-CCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcc
Q 006185           53 VIPDPFFQGMKDLKVLDLGGIRM-------VSPPSSLSFLS-NLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI  124 (657)
Q Consensus        53 ~~~~~~~~~l~~Lr~L~L~~~~~-------~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l  124 (657)
                      .+....|.++++|++|.+..+..       ..+|..+..++ +||.|++.++.....|..+ ...+|++|++.++.+..+
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence            45666688888899888876532       13677776664 5888988888766667666 568889999998888888


Q ss_pred             cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCC-
Q 006185          125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK-  203 (657)
Q Consensus       125 p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~-  203 (657)
                      |.++..+++|++|++++|..++.+|.  ++.+++|+.|++++|....           ..+..++.+++|+.|++++|. 
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~-----------~lp~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV-----------ELPSSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc-----------ccchhhhccCCCCEEeCCCCCC
Confidence            88888888999999988877888875  7888889999988874322           566777888888888888754 


Q ss_pred             CccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeecccccc
Q 006185          204 GEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLEN  283 (657)
Q Consensus       204 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~  283 (657)
                      .+.+|....+++|+.|++.++                                                      ..+..
T Consensus       694 L~~Lp~~i~l~sL~~L~Lsgc------------------------------------------------------~~L~~  719 (1153)
T PLN03210        694 LEILPTGINLKSLYRLNLSGC------------------------------------------------------SRLKS  719 (1153)
T ss_pred             cCccCCcCCCCCCCEEeCCCC------------------------------------------------------CCccc
Confidence            355555444555555554433                                                      22111


Q ss_pred             ccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccC-----CCCCCCCccEEEEe
Q 006185          284 IFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQL-----PAGCLSNVKRLDVV  358 (657)
Q Consensus       284 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~L~~L~l~  358 (657)
                      .+ .    ..++|++|++.++ .++.+|...      .+++|++|.+.++.... ++....     ....+++|+.|+++
T Consensus       720 ~p-~----~~~nL~~L~L~~n-~i~~lP~~~------~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls  786 (1153)
T PLN03210        720 FP-D----ISTNISWLDLDET-AIEEFPSNL------RLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLS  786 (1153)
T ss_pred             cc-c----ccCCcCeeecCCC-ccccccccc------cccccccccccccchhh-ccccccccchhhhhccccchheeCC
Confidence            11 0    1234555555554 333333322      14555555555443111 000000     01134567777777


Q ss_pred             cCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCc
Q 006185          359 GCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNL  438 (657)
Q Consensus       359 ~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L  438 (657)
                      +|+.+.. +|..+ +.+++|+.|++++|..++.+         |... .+++|+.|++++|..++.++..      .++|
T Consensus       787 ~n~~l~~-lP~si-~~L~~L~~L~Ls~C~~L~~L---------P~~~-~L~sL~~L~Ls~c~~L~~~p~~------~~nL  848 (1153)
T PLN03210        787 DIPSLVE-LPSSI-QNLHKLEHLEIENCINLETL---------PTGI-NLESLESLDLSGCSRLRTFPDI------STNI  848 (1153)
T ss_pred             CCCCccc-cChhh-hCCCCCCEEECCCCCCcCee---------CCCC-CccccCEEECCCCCcccccccc------cccc
Confidence            7666655 34433 56677777777777666655         3333 4666777777777666654221      3566


Q ss_pred             cEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhccc
Q 006185          439 KKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLV  518 (657)
Q Consensus       439 ~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~  518 (657)
                      ++|++++. .++.+                                |..+..+++|+.|++.+|++++.++..  ...++
T Consensus       849 ~~L~Ls~n-~i~~i--------------------------------P~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~  893 (1153)
T PLN03210        849 SDLNLSRT-GIEEV--------------------------------PWWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLK  893 (1153)
T ss_pred             CEeECCCC-CCccC--------------------------------hHHHhcCCCCCEEECCCCCCcCccCcc--ccccc
Confidence            66666653 33333                                233445666667777777766665332  34566


Q ss_pred             CCcEEEEecCCCccee
Q 006185          519 RLESLEVSSCPTLQEI  534 (657)
Q Consensus       519 ~L~~L~i~~C~~l~~~  534 (657)
                      +|+.+++++|.+++.+
T Consensus       894 ~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        894 HLETVDFSDCGALTEA  909 (1153)
T ss_pred             CCCeeecCCCcccccc
Confidence            6666777777666544

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=8e-29  Score=233.60  Aligned_cols=463  Identities=19%  Similarity=0.263  Sum_probs=325.9

Q ss_pred             CCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccC
Q 006185           17 EDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDY   95 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~   95 (657)
                      ..+..+.+++|.++.+.... ++..|.+|.+++|...++|+++ +++..++.++.+++.+.++|+.++.+.+|+.|+.+.
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence            35778899999998776666 8889999999999999999986 899999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185           96 CNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES  175 (657)
Q Consensus        96 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g  175 (657)
                      +...+.|.+++.+..|+.++..++.+.++|++++++.+|..+++.+ +.++++|++.+ +++.|++|+...|-..     
T Consensus       124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i-~m~~L~~ld~~~N~L~-----  196 (565)
T KOG0472|consen  124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHI-AMKRLKHLDCNSNLLE-----  196 (565)
T ss_pred             cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHH-HHHHHHhcccchhhhh-----
Confidence            9988899999999999999999999999999999999999999999 67888888844 4999999998776543     


Q ss_pred             ccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcc-cc-cCcceEEeecc
Q 006185          176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENF-NK-RCSRAMGLSQD  253 (657)
Q Consensus       176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~-~~l~~l~l~~~  253 (657)
                             ..|.+++.+..|.-|++..|++..+|+..+++.|++|.+..+       +...++... .+ +.+..++++.+
T Consensus       197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-------~i~~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-------QIEMLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-------HHHhhHHHHhcccccceeeecccc
Confidence                   788999999999999999999999998888899999998776       333333333 23 77888888887


Q ss_pred             cchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccc-cccccccccEEeccc
Q 006185          254 MRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERT-QRVTLRKLEWLFIRE  332 (657)
Q Consensus       254 ~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~  332 (657)
                       .++++|+.+.-+ .+|+.|+++++ .++..++.++.  + +|+.|.+.|++ ++.+-.+.... ....++.|+.=  ..
T Consensus       263 -klke~Pde~clL-rsL~rLDlSNN-~is~Lp~sLgn--l-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~--~~  333 (565)
T KOG0472|consen  263 -KLKEVPDEICLL-RSLERLDLSNN-DISSLPYSLGN--L-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSK--IK  333 (565)
T ss_pred             -ccccCchHHHHh-hhhhhhcccCC-ccccCCccccc--c-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh--hc
Confidence             788889888776 88999999877 45556666653  6 88888888884 32221111100 01112222220  00


Q ss_pred             ccccccc-----cc-----ccCC-CCCCCCccEEEEecCCCcccccchhHHHhcc--cCcEEEEcccccceeee------
Q 006185          333 NQNFVEI-----CH-----GQLP-AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQ--NLQRLMVESCELLVSVF------  393 (657)
Q Consensus       333 ~~~l~~~-----~~-----~~~~-~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~--~L~~L~l~~c~~l~~~~------  393 (657)
                      +.++..-     ..     ...| .....+.+.|++++ ..++. .|...++...  -....++++ .++.+++      
T Consensus       334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~-VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~l  410 (565)
T KOG0472|consen  334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTL-VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVEL  410 (565)
T ss_pred             cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccccc-CCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHH
Confidence            0010000     00     0011 11455678888888 66666 5655543322  134455544 2222221      


Q ss_pred             ---------ecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchh
Q 006185          394 ---------EIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAE  464 (657)
Q Consensus       394 ---------~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~  464 (657)
                               ......++|..+..+++|..|++++.+ |-++   +...+.+..|+.|+|+.- ++..+ |..+.....++
T Consensus       411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~L---P~e~~~lv~Lq~LnlS~N-rFr~l-P~~~y~lq~lE  484 (565)
T KOG0472|consen  411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDL---PEEMGSLVRLQTLNLSFN-RFRML-PECLYELQTLE  484 (565)
T ss_pred             HHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhc---chhhhhhhhhheeccccc-ccccc-hHHHhhHHHHH
Confidence                     000111235556678888888888843 5555   334445667888888874 44443 66665556666


Q ss_pred             hhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCC
Q 006185          465 EMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCP  529 (657)
Q Consensus       465 ~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  529 (657)
                      .+..++       .++..-.++++.++.+|.+|++.+ ..+..++|.  ++++++|++|++.|.+
T Consensus       485 tllas~-------nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~--LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  485 TLLASN-------NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPI--LGNMTNLRHLELDGNP  539 (565)
T ss_pred             HHHhcc-------ccccccChHHhhhhhhcceeccCC-CchhhCChh--hccccceeEEEecCCc
Confidence            665554       334444456677888888888866 457666555  6788888888888876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=3.8e-25  Score=218.26  Aligned_cols=384  Identities=20%  Similarity=0.210  Sum_probs=270.6

Q ss_pred             ccEEEccCCCccccCCCC----CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185           19 LTGISLMFNDIHEVPDGL----ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD   94 (657)
Q Consensus        19 L~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~   94 (657)
                      -+.|+++.+.+..+....    -.+.-++|++++|.+.++....|.++++|+.+++..|.++.+|.......||+.|+|.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            356788888887764332    2345677999999988888888899999999999999999999888888889999999


Q ss_pred             CCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccc
Q 006185           95 YCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQ  172 (657)
Q Consensus        95 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  172 (657)
                      +|...+. -+.+..++.||.||++.|.|+.+|.. +.+-.++++|++.+ +.++.+..+.+..+.+|-.|.++.|.+.. 
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNritt-  211 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITT-  211 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccc-
Confidence            9883332 26788889999999999998877754 77778899999999 66777776668888899999999887753 


Q ss_pred             cccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEe
Q 006185          173 FESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGL  250 (657)
Q Consensus       173 ~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  250 (657)
                                --+..++++++|+.|++..|.+..+...  .++++|+.|.+..+.                         
T Consensus       212 ----------Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-------------------------  256 (873)
T KOG4194|consen  212 ----------LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-------------------------  256 (873)
T ss_pred             ----------cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-------------------------
Confidence                      4455677799999999988887555433  667777777776552                         


Q ss_pred             ecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEec
Q 006185          251 SQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFI  330 (657)
Q Consensus       251 ~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  330 (657)
                           |.++.++++-.+.++++|+|+.+ ++..+-..+-. ++..|+.|+++.| .++.+-..    .-...++|++|++
T Consensus       257 -----I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~N-aI~rih~d----~WsftqkL~~LdL  324 (873)
T KOG4194|consen  257 -----ISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYN-AIQRIHID----SWSFTQKLKELDL  324 (873)
T ss_pred             -----cccccCcceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchh-hhheeecc----hhhhcccceeEec
Confidence                 23344444444477778887765 33333333222 4778888888888 55544221    1123788888888


Q ss_pred             cccccccccccccCCCC---CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccccccc
Q 006185          331 RENQNFVEICHGQLPAG---CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETEL  407 (657)
Q Consensus       331 ~~~~~l~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  407 (657)
                      +++. +++     ++.+   .+..|++|.+++ +.++. +....+..+.+|++|++++- .+.......     ...+..
T Consensus       325 s~N~-i~~-----l~~~sf~~L~~Le~LnLs~-Nsi~~-l~e~af~~lssL~~LdLr~N-~ls~~IEDa-----a~~f~g  390 (873)
T KOG4194|consen  325 SSNR-ITR-----LDEGSFRVLSQLEELNLSH-NSIDH-LAEGAFVGLSSLHKLDLRSN-ELSWCIEDA-----AVAFNG  390 (873)
T ss_pred             cccc-ccc-----CChhHHHHHHHhhhhcccc-cchHH-HHhhHHHHhhhhhhhcCcCC-eEEEEEecc-----hhhhcc
Confidence            8875 332     2333   566788888888 56666 33444567888899988872 232221111     223456


Q ss_pred             CCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhc
Q 006185          408 FSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYR  470 (657)
Q Consensus       408 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~  470 (657)
                      +++|++|.+.+ .+++.|+...  +..++.|++|++.+ .-+.++-|.+|... .|++|.+..
T Consensus       391 l~~LrkL~l~g-Nqlk~I~krA--fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  391 LPSLRKLRLTG-NQLKSIPKRA--FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             chhhhheeecC-ceeeecchhh--hccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence            88899999988 5688875433  34578888888888 45666667778777 888887764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=1.1e-26  Score=230.56  Aligned_cols=361  Identities=20%  Similarity=0.336  Sum_probs=267.5

Q ss_pred             CC-CCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCC--CCCccccCC
Q 006185           10 WP-SINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV--SPPSSLSFL   85 (657)
Q Consensus        10 ~~-~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~~~~l   85 (657)
                      +| ....+++++.|.|....+..+|+.+ .+.+|++|.+++|++.++..+ +..++.||.+.+..|+++  .+|..|..+
T Consensus        24 FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l  102 (1255)
T KOG0444|consen   24 FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRL  102 (1255)
T ss_pred             CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhccc
Confidence            45 4667788888888888888888777 788888888888887777766 478888888888888874  478888888


Q ss_pred             CCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           86 SNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        86 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                      ..|.+|||++|...+.|..+.+-+++-+|++++|+|.++|.. +-+|+.|-+||+++ +.+..+|++ +.++.+|+.|++
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKL  180 (1255)
T ss_pred             ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhc
Confidence            888888888888666788888888888888888888888876 56788888888888 677788887 788888888888


Q ss_pred             ccCccccccccccccccccchhhhcCCCCccEEEeecCCC--ccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhccc
Q 006185          165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG--EIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFN  241 (657)
Q Consensus       165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (657)
                      ++|.+..           .....+..++.|+.|++++.+-  ..+|.. ..+.+|..++++.+                 
T Consensus       181 s~NPL~h-----------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-----------------  232 (1255)
T KOG0444|consen  181 SNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-----------------  232 (1255)
T ss_pred             CCChhhH-----------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-----------------
Confidence            8886543           4455666677777777777653  445544 45566666666543                 


Q ss_pred             ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccc
Q 006185          242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVT  321 (657)
Q Consensus       242 ~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  321 (657)
                                   .+..+|+.+..+ ++|..|+|+++ .+++...  ......+|++|+++.| .++.+|+....     
T Consensus       233 -------------~Lp~vPecly~l-~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrN-QLt~LP~avcK-----  289 (1255)
T KOG0444|consen  233 -------------NLPIVPECLYKL-RNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRN-QLTVLPDAVCK-----  289 (1255)
T ss_pred             -------------CCCcchHHHhhh-hhhheeccCcC-ceeeeec--cHHHHhhhhhhccccc-hhccchHHHhh-----
Confidence                         556678777776 88999999887 3343322  2234688999999999 78888876654     


Q ss_pred             cccccEEeccccccccccccccCCCC--CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185          322 LRKLEWLFIRENQNFVEICHGQLPAG--CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN  399 (657)
Q Consensus       322 ~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  399 (657)
                      ++.|++|.+.++. ++   ...+|.|  .+..|+.+...+ +++. +.|..+ ..|+.|+.|.++. ..+.++       
T Consensus       290 L~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~aan-N~LE-lVPEgl-cRC~kL~kL~L~~-NrLiTL-------  354 (1255)
T KOG0444|consen  290 LTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFHAAN-NKLE-LVPEGL-CRCVKLQKLKLDH-NRLITL-------  354 (1255)
T ss_pred             hHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHHhhc-cccc-cCchhh-hhhHHHHHhcccc-cceeec-------
Confidence            8899999888774 32   2334444  777888888777 4454 478776 7899999999975 667666       


Q ss_pred             ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEec
Q 006185          400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVE  444 (657)
Q Consensus       400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~  444 (657)
                        |+.+..++-|+.|++...|+|.. +..+...  -.+|+.-.|.
T Consensus       355 --PeaIHlL~~l~vLDlreNpnLVM-PPKP~da--~~~lefYNID  394 (1255)
T KOG0444|consen  355 --PEAIHLLPDLKVLDLRENPNLVM-PPKPNDA--RKKLEFYNID  394 (1255)
T ss_pred             --hhhhhhcCCcceeeccCCcCccC-CCCcchh--hhcceeeecc
Confidence              88899999999999999999987 4433322  2455554444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=3.9e-25  Score=218.18  Aligned_cols=339  Identities=19%  Similarity=0.211  Sum_probs=204.0

Q ss_pred             CCccEEEccCCCccccCCC--CCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEc
Q 006185           17 EDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRL   93 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l   93 (657)
                      ...+.|++++|.+.++...  .++++|+.+.+.+|.+..+|... +...||+.|+|.+|.|.++. +++..+..||.|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            5566788888877765444  27778888888888777777632 44455788888877776653 45677777888888


Q ss_pred             cCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccc
Q 006185           94 DYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHW  171 (657)
Q Consensus        94 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  171 (657)
                      +.|...+.+ ..+.+=.++++|++++|.|+.+-. .|..+.+|-+|.++. +.++.+|...+.++++|+.|++..|.+..
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceee
Confidence            877744444 556666777888888877776643 377777777777777 56777777766778888888777775532


Q ss_pred             ccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcc--cccCcce
Q 006185          172 QFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENF--NKRCSRA  247 (657)
Q Consensus       172 ~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~l~~  247 (657)
                                 ..--.+.++..|+.|.+..|++..+..+  ..+.++++|++..+.-..       +.+.+  ....++.
T Consensus       236 -----------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------vn~g~lfgLt~L~~  297 (873)
T KOG4194|consen  236 -----------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------VNEGWLFGLTSLEQ  297 (873)
T ss_pred             -----------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-------hhcccccccchhhh
Confidence                       2224466677777777777776666555  556677777776552111       11111  2244555


Q ss_pred             EEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccE
Q 006185          248 MGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEW  327 (657)
Q Consensus       248 l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~  327 (657)
                      |+++.| .|.++....++..++|+.|+|+++ .++...+. ....+..|++|.++.| .+..+-+.    .+..+.+|++
T Consensus       298 L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~-sf~~L~~Le~LnLs~N-si~~l~e~----af~~lssL~~  369 (873)
T KOG4194|consen  298 LDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEG-SFRVLSQLEELNLSHN-SIDHLAEG----AFVGLSSLHK  369 (873)
T ss_pred             hccchh-hhheeecchhhhcccceeEecccc-ccccCChh-HHHHHHHhhhhccccc-chHHHHhh----HHHHhhhhhh
Confidence            555554 333332222333366666666655 33333222 2234566666666666 44433222    3345667777


Q ss_pred             EeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcc
Q 006185          328 LFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVES  385 (657)
Q Consensus       328 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~  385 (657)
                      |+++.+.--.-+-.+..+...++.|++|.+.| ++++. +|..-+..+++||+|++.+
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~-I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS-IPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecC-ceeee-cchhhhccCcccceecCCC
Confidence            77766541000001222333577777777777 56666 4555556777777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=6.6e-25  Score=228.08  Aligned_cols=481  Identities=22%  Similarity=0.255  Sum_probs=271.7

Q ss_pred             EEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCC
Q 006185           21 GISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHL   99 (657)
Q Consensus        21 ~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~   99 (657)
                      +++++...++-||..+ ....+..|++..|.+...|-.+..+.-+|+.|++++|++...|..+..+.+|+.|+++.|...
T Consensus         2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence            3556666666666655 334466777777766665555555555677777777777777777777777777777777755


Q ss_pred             CCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccccccc
Q 006185          100 PDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDT  179 (657)
Q Consensus       100 ~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~  179 (657)
                      ..|.+.+++.+|++|.+.++.+..+|.++..+++|++|+++. +....+|.- +..+..+..+..++| ..         
T Consensus        82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N-~~---------  149 (1081)
T KOG0618|consen   82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNN-EK---------  149 (1081)
T ss_pred             hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcc-hh---------
Confidence            566777777777777777777777777777777777777777 556666655 666777777666666 11         


Q ss_pred             ccccchhhhcCCCCccEEEeecCCC-ccCCCCCCCCCccE-EEEEEcCccChhhHHHHHhhcccccCcceEEeecccchh
Q 006185          180 RSNAKFIELGALSRLTSLHIDIPKG-EIMPSDMSLPNLTS-FSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRIS  257 (657)
Q Consensus       180 ~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  257 (657)
                           +..++... ++.+++..+.. ..+..+  ..+++. |++..+.      .             ..++++.     
T Consensus       150 -----~~~lg~~~-ik~~~l~~n~l~~~~~~~--i~~l~~~ldLr~N~------~-------------~~~dls~-----  197 (1081)
T KOG0618|consen  150 -----IQRLGQTS-IKKLDLRLNVLGGSFLID--IYNLTHQLDLRYNE------M-------------EVLDLSN-----  197 (1081)
T ss_pred             -----hhhhcccc-chhhhhhhhhcccchhcc--hhhhheeeecccch------h-------------hhhhhhh-----
Confidence                 11122222 44444444332 111111  112222 3333220      0             0000000     


Q ss_pred             hhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccc--c
Q 006185          258 ALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQ--N  335 (657)
Q Consensus       258 ~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~  335 (657)
                               +.+|+.+....+ .+....     -.-++|+.|+...|+-. .....+      ...+|+.++++...  +
T Consensus       198 ---------~~~l~~l~c~rn-~ls~l~-----~~g~~l~~L~a~~n~l~-~~~~~p------~p~nl~~~dis~n~l~~  255 (1081)
T KOG0618|consen  198 ---------LANLEVLHCERN-QLSELE-----ISGPSLTALYADHNPLT-TLDVHP------VPLNLQYLDISHNNLSN  255 (1081)
T ss_pred             ---------ccchhhhhhhhc-ccceEE-----ecCcchheeeeccCcce-eecccc------ccccceeeecchhhhhc
Confidence                     123333322111 111010     01355666666666322 111111      14556666666543  1


Q ss_pred             ccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEe
Q 006185          336 FVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLT  415 (657)
Q Consensus       336 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~  415 (657)
                      +.+|      .+.+++|+.+.+.+ +.+.. .|... ....+|+.|.+..| .++.+         |.....+.+|+.|+
T Consensus       256 lp~w------i~~~~nle~l~~n~-N~l~~-lp~ri-~~~~~L~~l~~~~n-el~yi---------p~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  256 LPEW------IGACANLEALNANH-NRLVA-LPLRI-SRITSLVSLSAAYN-ELEYI---------PPFLEGLKSLRTLD  316 (1081)
T ss_pred             chHH------HHhcccceEecccc-hhHHh-hHHHH-hhhhhHHHHHhhhh-hhhhC---------CCcccccceeeeee
Confidence            1111      12456666666665 33333 33332 24455555555552 23333         44455577777777


Q ss_pred             cCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCcc
Q 006185          416 LIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLV  495 (657)
Q Consensus       416 l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~  495 (657)
                      ++. .+|.+++...... ...+|+.|.++. .++...+...=.....|++|.+.+       +++.+.....+.++.+||
T Consensus       317 L~~-N~L~~lp~~~l~v-~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~Lylan-------N~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  317 LQS-NNLPSLPDNFLAV-LNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLAN-------NHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             ehh-ccccccchHHHhh-hhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhc-------Ccccccchhhhcccccee
Confidence            776 3455543311110 011233343332 344443222222256677777765       344444455677899999


Q ss_pred             EEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCC
Q 006185          496 SITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSG  575 (657)
Q Consensus       496 ~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  575 (657)
                      .|++++ ..|.. +|.+.+..+..||+|+++|.. ++.++.             ....+++|+.|.-.+ ..+.++| +-
T Consensus       387 VLhLsy-NrL~~-fpas~~~kle~LeeL~LSGNk-L~~Lp~-------------tva~~~~L~tL~ahs-N~l~~fP-e~  448 (1081)
T KOG0618|consen  387 VLHLSY-NRLNS-FPASKLRKLEELEELNLSGNK-LTTLPD-------------TVANLGRLHTLRAHS-NQLLSFP-EL  448 (1081)
T ss_pred             eeeecc-ccccc-CCHHHHhchHHhHHHhcccch-hhhhhH-------------HHHhhhhhHHHhhcC-Cceeech-hh
Confidence            999987 45766 477777899999999999964 777752             222578899988877 6788888 44


Q ss_pred             CcceeeccccceeeeccCCCcce--ecCCCcccc-ceeceeEeccceeec
Q 006185          576 LHATVEFLALEALQIIDCPGMKT--FGYGNQLTP-KLLKGVEFGYCKYCW  622 (657)
Q Consensus       576 ~~~~~~~~sL~~L~i~~C~~l~~--lp~~~~~l~-~~L~~L~i~~C~~l~  622 (657)
                      .    .+++|+.+++ .|.+|+.  +|..   .| +.||.|++++..++.
T Consensus       449 ~----~l~qL~~lDl-S~N~L~~~~l~~~---~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  449 A----QLPQLKVLDL-SCNNLSEVTLPEA---LPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             h----hcCcceEEec-ccchhhhhhhhhh---CCCcccceeeccCCcccc
Confidence            3    3699999999 5788886  3433   36 789999999888643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=5.8e-25  Score=218.44  Aligned_cols=365  Identities=21%  Similarity=0.235  Sum_probs=284.1

Q ss_pred             CCCCCCccEEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCc
Q 006185           13 INTFEDLTGISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLR   89 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~   89 (657)
                      .+-++.+|-+++++|+++  .+|... .+..++-|-+....+..+|++. +.+.+|+.|.++.|++.++-..++.++.||
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLR   81 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence            345788999999999987  788877 8999999999999999999984 999999999999999998888999999999


Q ss_pred             EEEccCCCC--CCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185           90 TLRLDYCNH--LPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus        90 ~L~l~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~  167 (657)
                      .+++++|+.  ...|..+-++..|.+||+++|.+++.|..+.+-+++-.|++++ +.+..+|...+.+++.|-.|++++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc
Confidence            999999982  3358999999999999999999999999999999999999999 7899999998899999999999998


Q ss_pred             ccccccccccccccccchhhhcCCCCccEEEeecCCCccCCC--CCCCCCccEEEEEEcCccChhhHHHHHhhcccccCc
Q 006185          168 FCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPS--DMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCS  245 (657)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l  245 (657)
                      .+.            ..|..+..+.+|++|.+++|....+.-  ..+++.|+.|.+++..                    
T Consensus       161 rLe------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq--------------------  208 (1255)
T KOG0444|consen  161 RLE------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ--------------------  208 (1255)
T ss_pred             hhh------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc--------------------
Confidence            764            788899999999999999987643321  1334555555555431                    


Q ss_pred             ceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccc
Q 006185          246 RAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKL  325 (657)
Q Consensus       246 ~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  325 (657)
                              ..+..+|..+..+ .+|..++++.+ ++..++..+-  .+++|+.|++++| .++.+.....     .-.+|
T Consensus       209 --------RTl~N~Ptsld~l-~NL~dvDlS~N-~Lp~vPecly--~l~~LrrLNLS~N-~iteL~~~~~-----~W~~l  270 (1255)
T KOG0444|consen  209 --------RTLDNIPTSLDDL-HNLRDVDLSEN-NLPIVPECLY--KLRNLRRLNLSGN-KITELNMTEG-----EWENL  270 (1255)
T ss_pred             --------chhhcCCCchhhh-hhhhhcccccc-CCCcchHHHh--hhhhhheeccCcC-ceeeeeccHH-----HHhhh
Confidence                    1222345555555 78888888765 3333333322  4789999999999 6665543322     25789


Q ss_pred             cEEeccccccccccccccCCCC--CCCCccEEEEecCCCcccc-cchhHHHhcccCcEEEEcccccceeeeecccccccc
Q 006185          326 EWLFIRENQNFVEICHGQLPAG--CLSNVKRLDVVGCGSMLKI-LPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAK  402 (657)
Q Consensus       326 ~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~-~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  402 (657)
                      +.|+++.+. +     ..+|..  .++.|++|.+.+ ++++-. +|..+ +.+..|+.+...+ ..++-+         |
T Consensus       271 EtLNlSrNQ-L-----t~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGI-GKL~~Levf~aan-N~LElV---------P  332 (1255)
T KOG0444|consen  271 ETLNLSRNQ-L-----TVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGI-GKLIQLEVFHAAN-NKLELV---------P  332 (1255)
T ss_pred             hhhccccch-h-----ccchHHHhhhHHHHHHHhcc-CcccccCCccch-hhhhhhHHHHhhc-cccccC---------c
Confidence            999999885 2     233443  778899988887 444322 45554 7788888888877 455544         8


Q ss_pred             cccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCccccc
Q 006185          403 EETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQ  451 (657)
Q Consensus       403 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~  451 (657)
                      +++..|+.|++|.+.. ..|..+   +...+-++-|+.|++..-|+|.-
T Consensus       333 EglcRC~kL~kL~L~~-NrLiTL---PeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLDH-NRLITL---PEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             hhhhhhHHHHHhcccc-cceeec---hhhhhhcCCcceeeccCCcCccC
Confidence            8999999999999986 555555   44556689999999999998864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=4.6e-25  Score=208.33  Aligned_cols=387  Identities=20%  Similarity=0.275  Sum_probs=196.3

Q ss_pred             CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL   91 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L   91 (657)
                      +..+..++.++.++|.+..+|... ...+++.+++++|.+..+++++ +.+..|..++..+|++.++|..+.++..|..|
T Consensus        87 ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l  165 (565)
T KOG0472|consen   87 IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKL  165 (565)
T ss_pred             HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence            444444444444444444444443 4444444444444444444442 34444444444444444444444444444444


Q ss_pred             EccCCC-----------------------CCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCC
Q 006185           92 RLDYCN-----------------------HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELI  148 (657)
Q Consensus        92 ~l~~~~-----------------------~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~  148 (657)
                      ++.++.                       ..+.|+.++.+.+|..|+++.+++..+| +|+.+..|.+|++.. +.++.+
T Consensus       166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~l  243 (565)
T KOG0472|consen  166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEML  243 (565)
T ss_pred             hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhh
Confidence            444444                       3334444444444444444444444444 344444444444444 334444


Q ss_pred             chhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEEcCcc
Q 006185          149 PPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEED  227 (657)
Q Consensus       149 ~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~  227 (657)
                      |.+....+.++..||++.|.++            +.|.++..+++|..|+++.|.+..+|.. .++ +|+.|.+.+++-.
T Consensus       244 pae~~~~L~~l~vLDLRdNklk------------e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLK------------EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HHHHhcccccceeeeccccccc------------cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            5443345566666666665544            5666666667777777777776666655 344 6666666665411


Q ss_pred             Chh------------hHHHH------------------------HhhcccccCcceEEeecccchhhhHHHHHHHH--cc
Q 006185          228 TLN------------DFIEL------------------------FLENFNKRCSRAMGLSQDMRISALHSWIKNLL--LR  269 (657)
Q Consensus       228 ~~~------------~~~~~------------------------~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~--~~  269 (657)
                      +..            ++...                        +++.-.....+.+++++. .++.+|+.++..-  .-
T Consensus       311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~  389 (565)
T KOG0472|consen  311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEI  389 (565)
T ss_pred             HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcc
Confidence            100            00000                        000001123344444443 6677888777652  22


Q ss_pred             ccEEEEeeccccccccccccccccccceE-EEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCC--
Q 006185          270 SEILALIEVNDLENIFSNLANDDFNELMF-LYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPA--  346 (657)
Q Consensus       270 L~~L~L~~~~~l~~~~~~l~~~~~~~L~~-L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--  346 (657)
                      .+..+++.+ .+.+.+..+..  +..+.+ +.++++ .+..++..     ...+++|..|+++++.      -..+|.  
T Consensus       390 Vt~VnfskN-qL~elPk~L~~--lkelvT~l~lsnn-~isfv~~~-----l~~l~kLt~L~L~NN~------Ln~LP~e~  454 (565)
T KOG0472|consen  390 VTSVNFSKN-QLCELPKRLVE--LKELVTDLVLSNN-KISFVPLE-----LSQLQKLTFLDLSNNL------LNDLPEEM  454 (565)
T ss_pred             eEEEecccc-hHhhhhhhhHH--HHHHHHHHHhhcC-ccccchHH-----HHhhhcceeeecccch------hhhcchhh
Confidence            666777665 33444433221  222322 333333 44433332     3357888888888775      223333  


Q ss_pred             CCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCccccc
Q 006185          347 GCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIW  426 (657)
Q Consensus       347 ~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  426 (657)
                      +.+-.||.|+|+.. .... .|... .....|+.+-.++ .++..+.        +.++..+..|..|++.+ ..+..+ 
T Consensus       455 ~~lv~Lq~LnlS~N-rFr~-lP~~~-y~lq~lEtllas~-nqi~~vd--------~~~l~nm~nL~tLDL~n-Ndlq~I-  520 (565)
T KOG0472|consen  455 GSLVRLQTLNLSFN-RFRM-LPECL-YELQTLETLLASN-NQIGSVD--------PSGLKNMRNLTTLDLQN-NDLQQI-  520 (565)
T ss_pred             hhhhhhheeccccc-cccc-chHHH-hhHHHHHHHHhcc-ccccccC--------hHHhhhhhhcceeccCC-CchhhC-
Confidence            36677888888885 4443 34433 2233344443333 3444442        34477888888888887 446665 


Q ss_pred             CCCCcccccCCccEEEeccCc
Q 006185          427 KGDTQFVSLHNLKKVRVEECD  447 (657)
Q Consensus       427 ~~~~~~~~~~~L~~L~i~~C~  447 (657)
                        +...+++.+|++|++.+-|
T Consensus       521 --Pp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  521 --PPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             --ChhhccccceeEEEecCCc
Confidence              3445678889999888865

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-24  Score=226.34  Aligned_cols=464  Identities=21%  Similarity=0.234  Sum_probs=258.0

Q ss_pred             CCCCCC-CCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185            6 ELKDWP-SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus         6 ~l~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      .+.-+| .+-.-..+.+|++..|.+-..|-.+  +.-+|++|++++|.+..+|..+ ..+.+|+.|.++.|.|.+.|.++
T Consensus         9 ~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~   87 (1081)
T KOG0618|consen    9 QLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSC   87 (1081)
T ss_pred             cCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchh-hhHHHHhhcccchhhHhhCchhh
Confidence            444455 2333445788888888876655222  4556999999999988888875 78899999999999998899888


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                      .++.+|++|+|.++....+|.++..+++|++|++++|.+...|..+..+..+..+..+++..+..++..     . .+++
T Consensus        88 ~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~-ik~~  161 (1081)
T KOG0618|consen   88 SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----S-IKKL  161 (1081)
T ss_pred             hhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----c-chhh
Confidence            899999999999888777888999999999999999988888887777777777777764333333221     1 3444


Q ss_pred             EcccCccccccccc-------ccccc-ccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHH
Q 006185          163 YMSHSFCHWQFESE-------EDTRS-NAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIE  234 (657)
Q Consensus       163 ~l~~~~~~~~~~g~-------~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  234 (657)
                      ++..+.+...+.+-       -+-.. ......+..+.+|+.+....+....+.  ..-++|+.|....+.-.       
T Consensus       162 ~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~-------  232 (1081)
T KOG0618|consen  162 DLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLT-------  232 (1081)
T ss_pred             hhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEE--ecCcchheeeeccCcce-------
Confidence            44333222100000       00000 000233344444444444443322111  11234444444433111       


Q ss_pred             HHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecc
Q 006185          235 LFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSL  314 (657)
Q Consensus       235 ~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~  314 (657)
                      .......+..+.+++++.+ .+..+|+|+... .+|+.+...++ .++..+....  ...+|+.|.+..| .++.++...
T Consensus       233 ~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~-~nle~l~~n~N-~l~~lp~ri~--~~~~L~~l~~~~n-el~yip~~l  306 (1081)
T KOG0618|consen  233 TLDVHPVPLNLQYLDISHN-NLSNLPEWIGAC-ANLEALNANHN-RLVALPLRIS--RITSLVSLSAAYN-ELEYIPPFL  306 (1081)
T ss_pred             eeccccccccceeeecchh-hhhcchHHHHhc-ccceEecccch-hHHhhHHHHh--hhhhHHHHHhhhh-hhhhCCCcc
Confidence            1111222355666666665 555577777766 77777777655 3333332222  2566666666666 566555544


Q ss_pred             ccccccccccccEEeccccccccccccccCCCCCC---C-CccEEEEecCCCcccccchhHHHhcccCcEEEEcccccce
Q 006185          315 ERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCL---S-NVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLV  390 (657)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~---~-~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~  390 (657)
                      .     .+.+|+.|++..+. +.     .+|...+   . .|..|..+. .++.. .|..--..++.|+.|.+.+ ..++
T Consensus       307 e-----~~~sL~tLdL~~N~-L~-----~lp~~~l~v~~~~l~~ln~s~-n~l~~-lp~~~e~~~~~Lq~Lylan-N~Lt  372 (1081)
T KOG0618|consen  307 E-----GLKSLRTLDLQSNN-LP-----SLPDNFLAVLNASLNTLNVSS-NKLST-LPSYEENNHAALQELYLAN-NHLT  372 (1081)
T ss_pred             c-----ccceeeeeeehhcc-cc-----ccchHHHhhhhHHHHHHhhhh-ccccc-cccccchhhHHHHHHHHhc-Cccc
Confidence            3     26667777766553 11     1121111   1 123333322 22222 2222122445555555555 1221


Q ss_pred             eeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhc
Q 006185          391 SVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYR  470 (657)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~  470 (657)
                      +-        ..+.+..+++||.|++++ ..|.+++...  ..++..|++|.++| .+|+.+ |..++.|..|++|...+
T Consensus       373 d~--------c~p~l~~~~hLKVLhLsy-NrL~~fpas~--~~kle~LeeL~LSG-NkL~~L-p~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  373 DS--------CFPVLVNFKHLKVLHLSY-NRLNSFPASK--LRKLEELEELNLSG-NKLTTL-PDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             cc--------chhhhccccceeeeeecc-cccccCCHHH--HhchHHhHHHhccc-chhhhh-hHHHHhhhhhHHHhhcC
Confidence            11        023345566666666666 3344442211  22455666666666 566665 46666666666666654


Q ss_pred             ccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcc-cCCcEEEEecCCC
Q 006185          471 NRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSL-VRLESLEVSSCPT  530 (657)
Q Consensus       471 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C~~  530 (657)
                      ..        ....| .+..++.|+.+++ +|.+|+.+....  ... +.|++|+++|...
T Consensus       440 N~--------l~~fP-e~~~l~qL~~lDl-S~N~L~~~~l~~--~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  440 NQ--------LLSFP-ELAQLPQLKVLDL-SCNNLSEVTLPE--ALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             Cc--------eeech-hhhhcCcceEEec-ccchhhhhhhhh--hCCCcccceeeccCCcc
Confidence            21        11223 4556777888888 567776653321  122 6788888887764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-18  Score=191.99  Aligned_cols=139  Identities=35%  Similarity=0.484  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCc--CcCCCchhhcCCCCccEEEecCCc-CCCCC
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH--LLVIPDPFFQGMKDLKVLDLGGIR-MVSPP   79 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp   79 (657)
                      ++.++.+.|........|+..+.+|.+..++....+++|++|-+.++.  +..++..+|..+++||+|||++|. +.++|
T Consensus       509 ~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP  588 (889)
T KOG4658|consen  509 DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP  588 (889)
T ss_pred             CCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence            445677788888889999999999999999988888899999999986  568888889999999999999863 56777


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccC
Q 006185           80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTD  141 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~  141 (657)
                      +.|+++.|||||+++++.....|..+++|+.|.+|++..+.-. .+|..+..+.+||+|.+..
T Consensus       589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            7777777777766666664444555555555555555544321 2222233344444444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1.3e-19  Score=151.82  Aligned_cols=166  Identities=30%  Similarity=0.466  Sum_probs=120.1

Q ss_pred             cccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCC
Q 006185           30 HEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELS  109 (657)
Q Consensus        30 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~  109 (657)
                      .+++..+.+.+.+.|.+++|.++.+|+.+ .++++|++|++++|+++++|.+++.++.||.|++.-|.....|..||.++
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence            35555556677777777777777777765 67777777777777777777777777777777777776556677777777


Q ss_pred             CCCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhh
Q 006185          110 GLEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIE  187 (657)
Q Consensus       110 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~  187 (657)
                      -|++||+.++++.  .+|..|-.+..|+.|++++ +....+|++ ++++++||.|.+..|...            ..+.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll------------~lpke  168 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL------------SLPKE  168 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh------------hCcHH
Confidence            7777777777665  6777777777777777777 566677777 777777777777776543            56777


Q ss_pred             hcCCCCccEEEeecCCCccCCCC
Q 006185          188 LGALSRLTSLHIDIPKGEIMPSD  210 (657)
Q Consensus       188 l~~l~~L~~L~l~~~~~~~~~~~  210 (657)
                      ++.+..|++|++.+|....+|..
T Consensus       169 ig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  169 IGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHHHHHHhcccceeeecChh
Confidence            77777777888777777666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2.2e-19  Score=150.37  Aligned_cols=162  Identities=24%  Similarity=0.409  Sum_probs=149.4

Q ss_pred             CCCCCCCCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccC
Q 006185            6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF   84 (657)
Q Consensus         6 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~   84 (657)
                      .+.++|.+..+..++.|.+++|.++.+|..+ .+++|++|++++|++.++|.++ +.+++||.|++.-|++..+|..|+.
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCC
Confidence            4566788889999999999999999999888 9999999999999999999986 9999999999999999999999999


Q ss_pred             CCCCcEEEccCCCCC--CCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           85 LSNLRTLRLDYCNHL--PDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        85 l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                      ++-|++||+.+|+.-  ..|..|..+..|+-|.++.++++-+|..++++++||.|.+++ +.+-++|.+ ++.++.|++|
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrel  178 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLREL  178 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHH
Confidence            999999999999833  358888889999999999999999999999999999999999 667789999 9999999999


Q ss_pred             EcccCccc
Q 006185          163 YMSHSFCH  170 (657)
Q Consensus       163 ~l~~~~~~  170 (657)
                      .+.+|...
T Consensus       179 hiqgnrl~  186 (264)
T KOG0617|consen  179 HIQGNRLT  186 (264)
T ss_pred             hcccceee
Confidence            99998764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.64  E-value=1.7e-18  Score=165.47  Aligned_cols=319  Identities=18%  Similarity=0.194  Sum_probs=179.6

Q ss_pred             ccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCC
Q 006185          268 LRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAG  347 (657)
Q Consensus       268 ~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  347 (657)
                      ..|+.|.+.+|....+.........+|++++|.+.+|..+++   .........+++|+.+.+..|..|++.....+. .
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd---~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la-~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD---SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA-E  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH---HHHHHHHHhcchhhhhhhcccchhHHHHHHHHH-H
Confidence            456666666665443332222223456666666666543331   111111223555555555555555443222111 1


Q ss_pred             CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccC
Q 006185          348 CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWK  427 (657)
Q Consensus       348 ~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~  427 (657)
                      .+++|++|.++.|+.+++-....+...+..++++...||..++.-    ..   ...-...+.+.++++.+|..+++...
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le----~l---~~~~~~~~~i~~lnl~~c~~lTD~~~  286 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE----AL---LKAAAYCLEILKLNLQHCNQLTDEDL  286 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH----HH---HHHhccChHhhccchhhhccccchHH
Confidence            355555555555555554333333344445555555555443211    00   00012334444555555555544211


Q ss_pred             CCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcce
Q 006185          428 GDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRN  507 (657)
Q Consensus       428 ~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~  507 (657)
                      .. ....+..|+.|..++|..+++..-..++.                              ..++|+.|.+.+|.++++
T Consensus       287 ~~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~------------------------------~~~~L~~l~l~~c~~fsd  335 (483)
T KOG4341|consen  287 WL-IACGCHALQVLCYSSCTDITDEVLWALGQ------------------------------HCHNLQVLELSGCQQFSD  335 (483)
T ss_pred             HH-HhhhhhHhhhhcccCCCCCchHHHHHHhc------------------------------CCCceEEEeccccchhhh
Confidence            00 11124455555555555544432222221                              568999999999999998


Q ss_pred             ecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCcccc-----ccCCCcceeec
Q 006185          508 LFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCF-----SSSGLHATVEF  582 (657)
Q Consensus       508 l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~  582 (657)
                      ........+.+.|+.+++.+|..+..-     .+.++..      ++|.||.|.++.|..+++-     . .+..   ..
T Consensus       336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~-----tL~sls~------~C~~lr~lslshce~itD~gi~~l~-~~~c---~~  400 (483)
T KOG4341|consen  336 RGFTMLGRNCPHLERLDLEECGLITDG-----TLASLSR------NCPRLRVLSLSHCELITDEGIRHLS-SSSC---SL  400 (483)
T ss_pred             hhhhhhhcCChhhhhhcccccceehhh-----hHhhhcc------CCchhccCChhhhhhhhhhhhhhhh-hccc---cc
Confidence            876666778999999999999876533     1222222      7999999999999988875     2 2223   45


Q ss_pred             cccceeeeccCCCcceecCCCccccceeceeEeccceeeccCchhHHHHHHHHhhhhhhHHHhhhcCCCCCCcCC
Q 006185          583 LALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSGISSGDYFL  657 (657)
Q Consensus       583 ~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~l~~~~l~~~l~~~~~~~~~~~~~i~~ip~v~~~~~~~  657 (657)
                      ..|+.+++.+||.+++-........+.||++++.+|.....    ..+          -....|.|++.+..||.
T Consensus       401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk----~~i----------~~~~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK----EAI----------SRFATHLPNIKVHAYFA  461 (483)
T ss_pred             cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh----hhh----------HHHHhhCccceehhhcc
Confidence            78999999999999874433333357899999999985441    122          23347889999999984

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=9.8e-15  Score=157.79  Aligned_cols=257  Identities=19%  Similarity=0.161  Sum_probs=171.9

Q ss_pred             CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185           17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~   96 (657)
                      .+-..|+++.+.++.+|..+. ++|+.|++.+|.+..+|.    ..++|++|++++|+++.+|..   ..+|+.|++++|
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            456678888888888887653 478889999888888875    257889999999988888753   357888889888


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE  176 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~  176 (657)
                      .....|..   ..+|+.|++++|.++.+|..   .++|++|++++| .+..+|..    ..+|+.|++++|.+.      
T Consensus       273 ~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~------  335 (788)
T PRK15387        273 PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLT------  335 (788)
T ss_pred             chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccc------
Confidence            74444442   25678888999988888863   467889999884 56666642    235777888777553      


Q ss_pred             cccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccch
Q 006185          177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRI  256 (657)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  256 (657)
                            .++.   -..+|+.|++++|++..+|..  ..+|+.|++.++.-..                            
T Consensus       336 ------~LP~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~----------------------------  376 (788)
T PRK15387        336 ------SLPT---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS----------------------------  376 (788)
T ss_pred             ------cccc---cccccceEecCCCccCCCCCC--Ccccceehhhcccccc----------------------------
Confidence                  1221   124788899988888777754  4567777766542111                            


Q ss_pred             hhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccc
Q 006185          257 SALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNF  336 (657)
Q Consensus       257 ~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  336 (657)
                        +|..    ..+|+.|+++++ .++.++ .    ..++|+.|++++| .+..+|..        +.+|+.|+++++. +
T Consensus       377 --LP~l----~~~L~~LdLs~N-~Lt~LP-~----l~s~L~~LdLS~N-~LssIP~l--------~~~L~~L~Ls~Nq-L  434 (788)
T PRK15387        377 --LPAL----PSGLKELIVSGN-RLTSLP-V----LPSELKELMVSGN-RLTSLPML--------PSGLLSLSVYRNQ-L  434 (788)
T ss_pred             --Cccc----ccccceEEecCC-cccCCC-C----cccCCCEEEccCC-cCCCCCcc--------hhhhhhhhhccCc-c
Confidence              2211    145677777665 333322 1    1357888888888 56655432        4567788888764 3


Q ss_pred             cccccccCCC--CCCCCccEEEEecCCCccc
Q 006185          337 VEICHGQLPA--GCLSNVKRLDVVGCGSMLK  365 (657)
Q Consensus       337 ~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~  365 (657)
                      +     .+|.  ..+++|+.|++++++ ++.
T Consensus       435 t-----~LP~sl~~L~~L~~LdLs~N~-Ls~  459 (788)
T PRK15387        435 T-----RLPESLIHLSSETTVNLEGNP-LSE  459 (788)
T ss_pred             c-----ccChHHhhccCCCeEECCCCC-CCc
Confidence            3     2333  367788888888854 443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=3.6e-15  Score=162.22  Aligned_cols=179  Identities=19%  Similarity=0.298  Sum_probs=127.1

Q ss_pred             CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185           17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~   96 (657)
                      .+.+.|+++++.++.+|..+ .++|+.|++++|.+..+|..++   .+|++|++++|+++++|..+.  .+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            56778899888888888754 2578899999998888887653   578999999998888887664  47889999988


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE  176 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~  176 (657)
                      .....|..+.  .+|++|++++|.++.+|..+.  .+|++|++++| .++.+|.. +.  .+|++|++++|.+.      
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt------  317 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLT------  317 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccc------
Confidence            8666666554  478899999888888887665  47888888884 56677754 22  46777888777553      


Q ss_pred             cccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185          177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  224 (657)
                            ..+..+  .++|+.|++..|.+..+|... .++|+.|+++++
T Consensus       318 ------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N  356 (754)
T PRK15370        318 ------ALPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKN  356 (754)
T ss_pred             ------cCCccc--cccceeccccCCccccCChhh-cCcccEEECCCC
Confidence                  122212  246777777777665555432 245555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=1.5e-14  Score=156.28  Aligned_cols=254  Identities=20%  Similarity=0.147  Sum_probs=142.2

Q ss_pred             CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCC
Q 006185           40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS  119 (657)
Q Consensus        40 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~  119 (657)
                      +-..|+++++.+..+|+.+.   ++|+.|++++|+++.+|..   .++|++|++++|.....|..   ..+|++|++++|
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            45567777777777776542   3677777777777766642   45677777777764444432   356677777777


Q ss_pred             CCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEe
Q 006185          120 DVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHI  199 (657)
Q Consensus       120 ~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l  199 (657)
                      .++.+|...   .+|+.|++++ +.++.+|..    .++|++|++++|.+.            ..+.   ...+|+.|++
T Consensus       273 ~L~~Lp~lp---~~L~~L~Ls~-N~Lt~LP~~----p~~L~~LdLS~N~L~------------~Lp~---lp~~L~~L~L  329 (788)
T PRK15387        273 PLTHLPALP---SGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLA------------SLPA---LPSELCKLWA  329 (788)
T ss_pred             chhhhhhch---hhcCEEECcC-Ccccccccc----ccccceeECCCCccc------------cCCC---Cccccccccc
Confidence            777666532   4566777777 345566542    356777777776543            1111   1134666667


Q ss_pred             ecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeecc
Q 006185          200 DIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVN  279 (657)
Q Consensus       200 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  279 (657)
                      .+|.+..+|..  ..+|+.|+++++.-..                              +|..    ..+|+.|.+.++ 
T Consensus       330 s~N~L~~LP~l--p~~Lq~LdLS~N~Ls~------------------------------LP~l----p~~L~~L~Ls~N-  372 (788)
T PRK15387        330 YNNQLTSLPTL--PSGLQELSVSDNQLAS------------------------------LPTL----PSELYKLWAYNN-  372 (788)
T ss_pred             ccCcccccccc--ccccceEecCCCccCC------------------------------CCCC----Ccccceehhhcc-
Confidence            77766666543  2456666666542111                              1110    134555555544 


Q ss_pred             ccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEec
Q 006185          280 DLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVG  359 (657)
Q Consensus       280 ~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  359 (657)
                      .+..+ |.    ...+|+.|++++| .+..++..        .++|+.|+++++. ++.     +|. .+.+|+.|++++
T Consensus       373 ~L~~L-P~----l~~~L~~LdLs~N-~Lt~LP~l--------~s~L~~LdLS~N~-Lss-----IP~-l~~~L~~L~Ls~  431 (788)
T PRK15387        373 RLTSL-PA----LPSGLKELIVSGN-RLTSLPVL--------PSELKELMVSGNR-LTS-----LPM-LPSGLLSLSVYR  431 (788)
T ss_pred             ccccC-cc----cccccceEEecCC-cccCCCCc--------ccCCCEEEccCCc-CCC-----CCc-chhhhhhhhhcc
Confidence            23322 21    1346777777776 45444332        4567777777764 321     222 234667777776


Q ss_pred             CCCcccccchhHHHhcccCcEEEEccc
Q 006185          360 CGSMLKILPSHLVQSFQNLQRLMVESC  386 (657)
Q Consensus       360 c~~l~~~~p~~~~~~~~~L~~L~l~~c  386 (657)
                       +.++. +|..+ ..+++|+.|++++.
T Consensus       432 -NqLt~-LP~sl-~~L~~L~~LdLs~N  455 (788)
T PRK15387        432 -NQLTR-LPESL-IHLSSETTVNLEGN  455 (788)
T ss_pred             -Ccccc-cChHH-hhccCCCeEECCCC
Confidence             34554 45443 46677777777763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=2.1e-14  Score=156.31  Aligned_cols=191  Identities=19%  Similarity=0.294  Sum_probs=150.3

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS   83 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~   83 (657)
                      +.+++.+|.. -.+.++.|++++|.++.+|.... ++|++|++++|.+..+|..+.   .+|+.|++++|++.++|..+.
T Consensus       187 ~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        187 ILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP  261 (754)
T ss_pred             CCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh
Confidence            3467777741 24789999999999999987653 689999999999999988653   579999999999999998775


Q ss_pred             CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185           84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY  163 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~  163 (657)
                        .+|++|++++|.....|..+.  .+|++|++++|.++.+|..+.  .+|++|++++ +.+..+|.. +  .++|+.|+
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~  331 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLE  331 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceecc
Confidence              589999999998555666554  589999999999999987664  4799999999 567778764 2  36899999


Q ss_pred             cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185          164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  224 (657)
                      +++|.+.            .++..+.  ++|+.|++++|.+..+|... .++|+.|++.++
T Consensus       332 Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N  377 (754)
T PRK15370        332 AGENALT------------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRN  377 (754)
T ss_pred             ccCCccc------------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCC
Confidence            9998654            2333332  68999999999987776542 357777777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.50  E-value=3.3e-16  Score=148.69  Aligned_cols=121  Identities=26%  Similarity=0.331  Sum_probs=68.7

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecC-CcCCCCCc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG-IRMVSPPS   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp~   80 (657)
                      +.+++++|.- -.+.-..+.|..|+|+.||+..  .+++||.|++++|.+..|.+..|.+++.|-.|-+.+ |+|+++|.
T Consensus        55 ~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   55 GKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             CCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            4456666621 2345555667677777776665  666777777777776666666667776666665555 56666653


Q ss_pred             -cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccc
Q 006185           81 -SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIP  125 (657)
Q Consensus        81 -~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp  125 (657)
                       .|+++..|+-|.+.-|...-. ...+..+++|..|.+..+.+..++
T Consensus       134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~  180 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC  180 (498)
T ss_pred             hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc
Confidence             455666666555555441111 134444444544444444444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.41  E-value=1.2e-14  Score=138.29  Aligned_cols=261  Identities=23%  Similarity=0.262  Sum_probs=189.1

Q ss_pred             CCCCCCCCcc--EEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCC
Q 006185           11 PSINTFEDLT--GISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSN   87 (657)
Q Consensus        11 ~~~~~~~~L~--~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~   87 (657)
                      |+-+.++...  .++.+..++++||..+- +.-..+.+..|.+..+|+.+|+.+++||+|||+.|+|+.+ |..|..+..
T Consensus        38 P~pC~Cs~~~g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~  116 (498)
T KOG4237|consen   38 PAPCTCSDVEGGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS  116 (498)
T ss_pred             CCCcccCCCCCceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHh
Confidence            5555666643  35666677888887653 2567889999999999999999999999999999999875 788999999


Q ss_pred             CcEEEccCCCCCCC-C-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           88 LRTLRLDYCNHLPD-L-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        88 L~~L~l~~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                      |-.|-+.+++.+++ | ..|++|..|+.|.+.-+.+.-+++ .+..+++|..|.+.+ +.+..++...+..+..++.+.+
T Consensus       117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhl  195 (498)
T KOG4237|consen  117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHL  195 (498)
T ss_pred             hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhh
Confidence            98888888554554 5 779999999999999999886554 488899999999999 6677777766777777777776


Q ss_pred             ccCc------ccccc----------cc----------------------------c------cccc-cccchhhhcCCCC
Q 006185          165 SHSF------CHWQF----------ES----------------------------E------EDTR-SNAKFIELGALSR  193 (657)
Q Consensus       165 ~~~~------~~~~~----------~g----------------------------~------~~~~-~~~~~~~l~~l~~  193 (657)
                      ..+.      +.|..          .|                            .      .+.. ...-..-++.+++
T Consensus       196 A~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~  275 (498)
T KOG4237|consen  196 AQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPN  275 (498)
T ss_pred             hcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhccc
Confidence            5543      11100          00                            0      0001 1122234788999


Q ss_pred             ccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHcccc
Q 006185          194 LTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSE  271 (657)
Q Consensus       194 L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~  271 (657)
                      |++|++++|.++.+...  .+...+++|.+..+                              +++.+...++..+..|+
T Consensus       276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N------------------------------~l~~v~~~~f~~ls~L~  325 (498)
T KOG4237|consen  276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRN------------------------------KLEFVSSGMFQGLSGLK  325 (498)
T ss_pred             ceEeccCCCccchhhhhhhcchhhhhhhhcCcc------------------------------hHHHHHHHhhhccccce
Confidence            99999999999877765  67788888888765                              34445556666668888


Q ss_pred             EEEEeeccccccccccccccccccceEEEeecCC
Q 006185          272 ILALIEVNDLENIFSNLANDDFNELMFLYIFGCN  305 (657)
Q Consensus       272 ~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~  305 (657)
                      .|+|.++ +++.+.|. .++....|.+|++-.|+
T Consensus       326 tL~L~~N-~it~~~~~-aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  326 TLSLYDN-QITTVAPG-AFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             eeeecCC-eeEEEecc-cccccceeeeeehccCc
Confidence            8988877 44444443 22357788888887763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.40  E-value=2.7e-15  Score=143.81  Aligned_cols=276  Identities=17%  Similarity=0.174  Sum_probs=158.0

Q ss_pred             cceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHh
Q 006185          295 ELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQS  374 (657)
Q Consensus       295 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~  374 (657)
                      .|+.|.++||.....   .........+|+++.|.+.+|.++++.....+ ...++.|+.|.+..|..+++..-..+...
T Consensus       139 ~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             ccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            456666666643332   11111233455555555555554443211111 11455555555555555555444444455


Q ss_pred             cccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccc
Q 006185          375 FQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFP  454 (657)
Q Consensus       375 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~  454 (657)
                      |++|++|.++.|+.++.    .+.   ..-...+..++++...+|..+.. -........++-+.++++.+|..+++.  
T Consensus       215 C~kL~~lNlSwc~qi~~----~gv---~~~~rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD~--  284 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISG----NGV---QALQRGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCNQLTDE--  284 (483)
T ss_pred             hhhHHHhhhccCchhhc----Ccc---hHHhccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhccccch--
Confidence            55555555555555443    111   11122333445554445543332 000111112333444444455444443  


Q ss_pred             cccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCccee
Q 006185          455 ANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEI  534 (657)
Q Consensus       455 ~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~  534 (657)
                                             . +|.    .-..+..|+.|..++|.++.+.....+.++.++|+.+.+.+|..+...
T Consensus       285 -----------------------~-~~~----i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~  336 (483)
T KOG4341|consen  285 -----------------------D-LWL----IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR  336 (483)
T ss_pred             -----------------------H-HHH----HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence                                   1 000    011567899999999999988766677788999999999999987644


Q ss_pred             eeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCccee-----cCCCccccce
Q 006185          535 IMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTF-----GYGNQLTPKL  609 (657)
Q Consensus       535 ~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~l-----p~~~~~l~~~  609 (657)
                           +...+..      +++.|+.+++.+|...++-. .... ..++|.||+|.+++|..+++-     ....-.+ ..
T Consensus       337 -----~ft~l~r------n~~~Le~l~~e~~~~~~d~t-L~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~-~~  402 (483)
T KOG4341|consen  337 -----GFTMLGR------NCPHLERLDLEECGLITDGT-LASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL-EG  402 (483)
T ss_pred             -----hhhhhhc------CChhhhhhcccccceehhhh-Hhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccc-cc
Confidence                 4444444      78999999999998776653 2223 337999999999999999985     2211122 55


Q ss_pred             eceeEeccceeeccCch
Q 006185          610 LKGVEFGYCKYCWTGNL  626 (657)
Q Consensus       610 L~~L~i~~C~~l~~~~l  626 (657)
                      |..+++.+||.+++..+
T Consensus       403 l~~lEL~n~p~i~d~~L  419 (483)
T KOG4341|consen  403 LEVLELDNCPLITDATL  419 (483)
T ss_pred             cceeeecCCCCchHHHH
Confidence            88999999998875433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.32  E-value=1.7e-12  Score=143.84  Aligned_cols=134  Identities=25%  Similarity=0.354  Sum_probs=105.0

Q ss_pred             CCCCCCCCCCCCccEEEccCCC--ccccCCCC--CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            7 LKDWPSINTFEDLTGISLMFND--IHEVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         7 l~~~~~~~~~~~L~~L~l~~~~--~~~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      +..++.-..++++++|-+..|.  +..++..+  .++.||+||+++|.-. .+|..+ +++-+||||+++++.+..+|..
T Consensus       535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~  613 (889)
T KOG4658|consen  535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSG  613 (889)
T ss_pred             hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchH
Confidence            3444544566789999999996  66777653  7999999999987644 899986 9999999999999999999999


Q ss_pred             ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC---cccccccCCCCCCEEEccC
Q 006185           82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTD  141 (657)
Q Consensus        82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~  141 (657)
                      +++++.|.+|++..+.....+ .....+.+||+|.+......   ..-..+.++.+|+.+....
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999999999999999866654 55666999999999887633   1223345556666665544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=4.3e-12  Score=112.41  Aligned_cols=115  Identities=27%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc-c
Q 006185            6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL-S   83 (657)
Q Consensus         6 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~-~   83 (657)
                      .+++.+.+-...++|.|+|.+|.|+.+.... .+.+|++|++++|.+.++..  +..+++|++|++++|.++++...+ .
T Consensus         8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen    8 MIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHH
Confidence            3445555555566677777777776665544 46667777777777766654  566777777777777776665544 3


Q ss_pred             CCCCCcEEEccCCCC--CCCCcccCCCCCCCEEEeeCCCCC
Q 006185           84 FLSNLRTLRLDYCNH--LPDLSLIGELSGLEILDLSKSDVN  122 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~  122 (657)
                      .+++|++|++++|..  +.....+..+++|++|++.+|.++
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            466777777776661  122345556666666666666555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.23  E-value=4.1e-12  Score=128.61  Aligned_cols=204  Identities=20%  Similarity=0.135  Sum_probs=121.3

Q ss_pred             CCCCCCccEEEccCCCcc-----ccCCCC-CCCCCcEEEecCCcCcCCC------chhhcCCCCccEEEecCCcCC-CCC
Q 006185           13 INTFEDLTGISLMFNDIH-----EVPDGL-ECPKLQALFLQKNHLLVIP------DPFFQGMKDLKVLDLGGIRMV-SPP   79 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~------~~~~~~l~~Lr~L~L~~~~~~-~lp   79 (657)
                      +..+..++.|+++++.++     .+++.. ..+++++++++++.+...+      ...|..+++|++|++++|.+. ..+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            345566888888888773     344333 5667888888777654211      123567778888888888775 344


Q ss_pred             ccccCCCC---CcEEEccCCCCCCC-----CcccCCC-CCCCEEEeeCCCCC-----cccccccCCCCCCEEEccCCCCC
Q 006185           80 SSLSFLSN---LRTLRLDYCNHLPD-----LSLIGEL-SGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTDCYNL  145 (657)
Q Consensus        80 ~~~~~l~~---L~~L~l~~~~~~~~-----~~~~~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~~  145 (657)
                      ..+..+.+   |++|++++|.....     ...+..+ ++|+.|++++|.++     .++..+..+.+|++|++++|...
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            44444443   88888888773211     1345566 77888888888776     34445666777888888875433


Q ss_pred             CC----CchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC--C---C--CCCC
Q 006185          146 EL----IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP--S---D--MSLP  214 (657)
Q Consensus       146 ~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~---~--~~l~  214 (657)
                      ..    ++.. +..+++|++|++++|.+....       .......+..+++|+.|++++|.+....  .   .  ...+
T Consensus       179 ~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~  250 (319)
T cd00116         179 DAGIRALAEG-LKANCNLEVLDLNNNGLTDEG-------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI  250 (319)
T ss_pred             hHHHHHHHHH-HHhCCCCCEEeccCCccChHH-------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence            21    2222 344567888888777543211       1133445566777888888777653210  0   0  1235


Q ss_pred             CccEEEEEEc
Q 006185          215 NLTSFSITIG  224 (657)
Q Consensus       215 ~L~~L~l~~~  224 (657)
                      .|++|++.++
T Consensus       251 ~L~~L~l~~n  260 (319)
T cd00116         251 SLLTLSLSCN  260 (319)
T ss_pred             CceEEEccCC
Confidence            6666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.23  E-value=3.3e-12  Score=129.28  Aligned_cols=175  Identities=21%  Similarity=0.096  Sum_probs=101.8

Q ss_pred             EEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCc-----CCCchhhcCCCCccEEEecCCcCCC-------CCccccCC
Q 006185           21 GISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLL-----VIPDPFFQGMKDLKVLDLGGIRMVS-------PPSSLSFL   85 (657)
Q Consensus        21 ~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~~~-------lp~~~~~l   85 (657)
                      .|+|..+.++  .....+ .+.+|+.|+++++.+.     .++.. +...+.|++++++++.+..       ++..+.++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3555555554  222222 5566888888888764     23332 4566778888888776542       23456667


Q ss_pred             CCCcEEEccCCCCCC-CCcccCCCC---CCCEEEeeCCCCC-----cccccccCC-CCCCEEEccCCCCCCC----Cchh
Q 006185           86 SNLRTLRLDYCNHLP-DLSLIGELS---GLEILDLSKSDVN-----EIPVSFGRL-SHLRLLDLTDCYNLEL----IPPG  151 (657)
Q Consensus        86 ~~L~~L~l~~~~~~~-~~~~~~~l~---~L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~l~~c~~~~~----~~~~  151 (657)
                      .+|+.|++++|.... .+..+..+.   +|++|++++|.++     .+...+..+ ++|+.|++++|.....    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            788888888777332 233333333   3888888877765     233345566 7778888777653321    2222


Q ss_pred             HhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          152 VLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       152 ~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                       +..+++|++|++++|.+....       .......+...++|+.|++++|.+
T Consensus       161 -~~~~~~L~~L~l~~n~l~~~~-------~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         161 -LRANRDLKELNLANNGIGDAG-------IRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             -HHhCCCcCEEECcCCCCchHH-------HHHHHHHHHhCCCCCEEeccCCcc
Confidence             455667777777777543210       112334455556777777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=1.1e-12  Score=130.68  Aligned_cols=190  Identities=25%  Similarity=0.341  Sum_probs=143.3

Q ss_pred             CCCCCCCCCC---CCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC
Q 006185            4 GVELKDWPSI---NTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP   79 (657)
Q Consensus         4 ~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp   79 (657)
                      +..++++|--   -.+..-...+++.|.+..+|..+ .|-.|+.+.++.|.+..+|..+ .++..|.+|+|+.|++..+|
T Consensus        59 ~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp  137 (722)
T KOG0532|consen   59 GRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLP  137 (722)
T ss_pred             cchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCC
Confidence            4456666621   12344456788888888888777 6677888888888888888775 78888888888888888888


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185           80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL  159 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L  159 (657)
                      ..++.|. |+.|.+++|+....|..++.+.+|..||.+.|.+..+|..++.+.+|+.|.++. +.+..+|.+ +.. -.|
T Consensus       138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~-LpL  213 (722)
T KOG0532|consen  138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCS-LPL  213 (722)
T ss_pred             hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhC-Cce
Confidence            8777664 788888888866778888888888888888888888888888888888888887 566677777 553 347


Q ss_pred             cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC
Q 006185          160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD  210 (657)
Q Consensus       160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  210 (657)
                      ..||++.|.+.            .++..+.+|++|++|.++.|....-|..
T Consensus       214 i~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  214 IRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             eeeecccCcee------------ecchhhhhhhhheeeeeccCCCCCChHH
Confidence            88888877665            6777788888888888888776655544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.8e-10  Score=102.13  Aligned_cols=116  Identities=26%  Similarity=0.310  Sum_probs=27.1

Q ss_pred             ccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhc-CCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCC
Q 006185           24 LMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ-GMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDL  102 (657)
Q Consensus        24 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~  102 (657)
                      ++.+.|..++...+..++++|++.+|.+..+..  ++ .+.+|++|++++|.++++. .+..+++|++|++++|......
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             --------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred             ccccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence            444556666665555667777777777665543  33 4667777777777776654 3556666666666666632222


Q ss_pred             ccc-CCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCC
Q 006185          103 SLI-GELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDC  142 (657)
Q Consensus       103 ~~~-~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c  142 (657)
                      ..+ ..+++|++|++++|.|..+-+  .+..+++|++|++.++
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            333 246666666666666553322  2444555555555553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=2.1e-11  Score=121.85  Aligned_cols=161  Identities=23%  Similarity=0.362  Sum_probs=128.0

Q ss_pred             CCCCCCC-CCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185            5 VELKDWP-SINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus         5 ~~l~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      +.+.++| ..+.+..|..+.+..|.+-.+|... ++..|.+|+++.|++..+|..++  .--|++|-+++|+++.+|..+
T Consensus        85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~lp~~i  162 (722)
T KOG0532|consen   85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEI  162 (722)
T ss_pred             cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccccCCccc
Confidence            4555666 4566777788888888888887766 77788888888888888888752  346888888888888888888


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                      +.+.+|..||.+.|...+.|..++.+.+|+.|+++.+.+..+|+.+..| .|..||++. +++..+|.. +.+|++||+|
T Consensus       163 g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l  239 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVD-FRKMRHLQVL  239 (722)
T ss_pred             ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecchh-hhhhhhheee
Confidence            8888888888888887778888888888888888888888888888754 588888877 677788887 7888888888


Q ss_pred             EcccCccc
Q 006185          163 YMSHSFCH  170 (657)
Q Consensus       163 ~l~~~~~~  170 (657)
                      .|.+|.+.
T Consensus       240 ~LenNPLq  247 (722)
T KOG0532|consen  240 QLENNPLQ  247 (722)
T ss_pred             eeccCCCC
Confidence            88888664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=1e-09  Score=114.31  Aligned_cols=189  Identities=30%  Similarity=0.370  Sum_probs=129.5

Q ss_pred             EEEccCCCc-cccCCCCCCCCCcEEEecCCcCcCCCchhhcCCC-CccEEEecCCcCCCCCccccCCCCCcEEEccCCCC
Q 006185           21 GISLMFNDI-HEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMK-DLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        21 ~L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~   98 (657)
                      .+.+..+.+ ..+......+.+++|++.++.+.++++.. ..++ +|++|+++++++..+|..+..+++|+.|++++|..
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            456666655 34443345567777888777777777753 4453 78888888888777777777788888888888774


Q ss_pred             CCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccc
Q 006185           99 LPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEED  178 (657)
Q Consensus        99 ~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~  178 (657)
                      ...|...+.+..|+.|+++++.+..+|..++....|+++.+.++... ..+.. +.++.++..+.+.++.+.        
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~--------  245 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLE--------  245 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceee--------
Confidence            45555555777788888888888877777777777778877774323 33333 677777777776665432        


Q ss_pred             cccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185          179 TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  224 (657)
                          ..+..++.+..++.|+++.+.+..++....+.+++.|++.++
T Consensus       246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ----eccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence                224566777778888888888777776666777777777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=6.5e-10  Score=115.84  Aligned_cols=181  Identities=30%  Similarity=0.360  Sum_probs=152.1

Q ss_pred             CCCCCCCccEEEccCCCccccCCCCCCC--CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCc
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGLECP--KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLR   89 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~   89 (657)
                      .+...+.++.|++..|.+++++......  +|+.|++++|.+..++.. .+.++.|+.|++++|++.++|...+...+|+
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            4555678999999999999999888443  899999999999988654 4899999999999999999999888999999


Q ss_pred             EEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185           90 TLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus        90 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      .|+++++.....|..++...+|++|.++++.+...+..+.++.++..+.+.+ +.+..++.. ++.+..++.|++++|.+
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQI  267 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceeccccccc
Confidence            9999999966677777888889999999998777888899999999999777 455554444 78999999999999876


Q ss_pred             ccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185          170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP  208 (657)
Q Consensus       170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  208 (657)
                      .             .+..++.+.+++.|+++++.....+
T Consensus       268 ~-------------~i~~~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         268 S-------------SISSLGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             c-------------ccccccccCccCEEeccCccccccc
Confidence            3             2333889999999999998764443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=2.3e-10  Score=105.39  Aligned_cols=138  Identities=20%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185           84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY  163 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~  163 (657)
                      .-+.|+++|+++|.....-+++.-++.+++|++++|.+..+-. +..+++|++||+++ +.+..+.. .-.++-+.+.|.
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~G-wh~KLGNIKtL~  358 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVG-WHLKLGNIKTLK  358 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhh-hHhhhcCEeeee
Confidence            3456777777777633344566666777777777777665533 66677777777777 34444332 134566777777


Q ss_pred             cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCC---CCCCCCccEEEEEEcCccChhhHHHHHh
Q 006185          164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPS---DMSLPNLTSFSITIGEEDTLNDFIELFL  237 (657)
Q Consensus       164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~  237 (657)
                      +.+|.+             +....++++-+|..|++.+|+++.+..   ..++|.|+.+.+.+++-...+++-..++
T Consensus       359 La~N~i-------------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVL  422 (490)
T KOG1259|consen  359 LAQNKI-------------ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVL  422 (490)
T ss_pred             hhhhhH-------------hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHH
Confidence            776654             445556666677777777776644433   3567777777777776555555544333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=1.6e-10  Score=106.50  Aligned_cols=124  Identities=30%  Similarity=0.428  Sum_probs=62.3

Q ss_pred             CCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEc
Q 006185           15 TFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRL   93 (657)
Q Consensus        15 ~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l   93 (657)
                      .++-|+.+++++|.|+.+.+.. -.|++|.|+++.|.+..+..  +..+.+|..|||++|.+.++...-.++-|..+|.+
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            3444555555555555555544 34555555555555554443  34455555555555555444333334445555555


Q ss_pred             cCCCCCCCCcccCCCCCCCEEEeeCCCCCccc--ccccCCCCCCEEEccC
Q 006185           94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIP--VSFGRLSHLRLLDLTD  141 (657)
Q Consensus        94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~  141 (657)
                      .+|. ++..+.++++++|.+||+++|+|..+-  .+|++++-|+++.+.+
T Consensus       360 a~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  360 AQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             hhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            5554 444555555555555555555554332  2344444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.9e-09  Score=103.56  Aligned_cols=205  Identities=21%  Similarity=0.177  Sum_probs=136.8

Q ss_pred             CCCCCccEEEccCCCccccCC--CC-CCCCCcEEEecCCcCcC--CCchhhcCCCCccEEEecCCcCCCCCccc--cCCC
Q 006185           14 NTFEDLTGISLMFNDIHEVPD--GL-ECPKLQALFLQKNHLLV--IPDPFFQGMKDLKVLDLGGIRMVSPPSSL--SFLS   86 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~--~~l~   86 (657)
                      +.+++||.+.|..+.+...+.  .. .|++++.|++++|-+..  .-..+...+++|+.|+++.|.+....++.  ..+.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            567889999998888876663  23 78999999999987662  22345678899999999999775332221  3678


Q ss_pred             CCcEEEccCCCCCC-CC-cccCCCCCCCEEEeeCCC-CCcccccccCCCCCCEEEccCCCCCCCCch-hHhhcCccCcEE
Q 006185           87 NLRTLRLDYCNHLP-DL-SLIGELSGLEILDLSKSD-VNEIPVSFGRLSHLRLLDLTDCYNLELIPP-GVLSRLRKLEEL  162 (657)
Q Consensus        87 ~L~~L~l~~~~~~~-~~-~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~-~~~~~l~~L~~L  162 (657)
                      +|..|.++.|.... +. .....+++|+.|++.+|. +..-..+..-++.|+.|++++++.+ +++. -.++.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence            89999999998221 22 334568899999999983 3322233445678899999995444 4441 126788888888


Q ss_pred             EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC---CCCCCccEEEEEEc
Q 006185          163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD---MSLPNLTSFSITIG  224 (657)
Q Consensus       163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~L~~L~l~~~  224 (657)
                      +++.|.+.. ..+.    .-........++.|+.|.+..|++...+..   ..+++|+.|.+..+
T Consensus       277 nls~tgi~s-i~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  277 NLSSTGIAS-IAEP----DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             hccccCcch-hcCC----CccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            888875532 1000    001222345678899999998887555554   45577777776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.59  E-value=4.9e-08  Score=70.96  Aligned_cols=59  Identities=39%  Similarity=0.549  Sum_probs=37.3

Q ss_pred             CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCC
Q 006185           39 PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        39 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~   97 (657)
                      ++|++|++++|.+..+++.+|.++++|++|++++|.++.++ ..|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            35666666666666666666666666666666666666554 355666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=4.1e-08  Score=71.33  Aligned_cols=59  Identities=31%  Similarity=0.519  Sum_probs=46.0

Q ss_pred             CCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC
Q 006185           17 EDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM   75 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~   75 (657)
                      ++|++|++++|.++.++...  .+++|++|++++|.+..+++..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46778888888888877655  678888888888888777777788888888888887764

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.5e-08  Score=98.75  Aligned_cols=180  Identities=23%  Similarity=0.235  Sum_probs=130.2

Q ss_pred             CCCCCCccEEEccCCCcccc---CCCC-CCCCCcEEEecCCcCcCC-CchhhcCCCCccEEEecCCcCC--CCCccccCC
Q 006185           13 INTFEDLTGISLMFNDIHEV---PDGL-ECPKLQALFLQKNHLLVI-PDPFFQGMKDLKVLDLGGIRMV--SPPSSLSFL   85 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l---~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~--~lp~~~~~l   85 (657)
                      ...|+++|.|+|+.|-+...   .+.. .+|+|+.|+++.|.+... ....-..+++|+.|.+++|+++  ++-.....+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            45689999999999988743   3333 799999999999987621 1111236889999999999985  344455678


Q ss_pred             CCCcEEEccCCC-CCCCCcccCCCCCCCEEEeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCC--chh----HhhcC
Q 006185           86 SNLRTLRLDYCN-HLPDLSLIGELSGLEILDLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELI--PPG----VLSRL  156 (657)
Q Consensus        86 ~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~--~~~----~~~~l  156 (657)
                      ++|+.|++.+|. ....-.....+..|+.||+++|.+-.++  ..++.++.|+.|+++.|. +.++  |..    .....
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence            899999999995 2222344556788999999999887776  348889999999988853 3332  221    12457


Q ss_pred             ccCcEEEcccCccc-cccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          157 RKLEELYMSHSFCH-WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       157 ~~L~~L~l~~~~~~-~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      ++|+.|++..|.+. |           .....+..+.+|+.|.+..+.+
T Consensus       301 ~kL~~L~i~~N~I~~w-----------~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  301 PKLEYLNISENNIRDW-----------RSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             ccceeeecccCccccc-----------cccchhhccchhhhhhcccccc
Confidence            89999999888652 3           4456677778888888777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.54  E-value=3.3e-07  Score=91.43  Aligned_cols=15  Identities=20%  Similarity=0.572  Sum_probs=10.2

Q ss_pred             ccCCcEEEEecCCCc
Q 006185          517 LVRLESLEVSSCPTL  531 (657)
Q Consensus       517 l~~L~~L~i~~C~~l  531 (657)
                      +++|++|.|.+|..+
T Consensus       155 PsSLk~L~Is~c~~i  169 (426)
T PRK15386        155 SPSLKTLSLTGCSNI  169 (426)
T ss_pred             CCcccEEEecCCCcc
Confidence            456777777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.54  E-value=1.2e-08  Score=96.72  Aligned_cols=206  Identities=19%  Similarity=0.168  Sum_probs=120.4

Q ss_pred             CCCCCCccEEEccCCCcc----ccCCC--------CCCCCCcEEEecCCcCc-CCC---chhhcCCCCccEEEecCCcCC
Q 006185           13 INTFEDLTGISLMFNDIH----EVPDG--------LECPKLQALFLQKNHLL-VIP---DPFFQGMKDLKVLDLGGIRMV   76 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~----~l~~~--------~~~~~L~~L~l~~~~~~-~~~---~~~~~~l~~Lr~L~L~~~~~~   76 (657)
                      ++.-++||..+++.-...    .+|+.        ..+++|++|++|+|.+. .-+   ...++.+..|+.|.|.+|.+.
T Consensus        54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            344557777777654322    33332        26677888888887766 222   234566777888888887764


Q ss_pred             CC--------------CccccCCCCCcEEEccCCCCCCCC-----cccCCCCCCCEEEeeCCCCC-----cccccccCCC
Q 006185           77 SP--------------PSSLSFLSNLRTLRLDYCNHLPDL-----SLIGELSGLEILDLSKSDVN-----EIPVSFGRLS  132 (657)
Q Consensus        77 ~l--------------p~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~  132 (657)
                      ..              ...+++-..||++...+|.....+     ..+...+.|+.+.+..|.|.     .+...+..++
T Consensus       134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~  213 (382)
T KOG1909|consen  134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP  213 (382)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC
Confidence            21              223445567888888777733333     34556677888888777655     2334567778


Q ss_pred             CCCEEEccCCCCCCCCch---hHhhcCccCcEEEcccCccccccccccccccccchhhhc-CCCCccEEEeecCCCccCC
Q 006185          133 HLRLLDLTDCYNLELIPP---GVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG-ALSRLTSLHIDIPKGEIMP  208 (657)
Q Consensus       133 ~L~~L~l~~c~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~  208 (657)
                      +|+.||++++.....-..   ..+..+++|++|++++|.+...  |     ..+....+. ..+.|+.+.+.+|.+..-.
T Consensus       214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~--G-----a~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE--G-----AIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc--c-----HHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            888888887543322111   1245567788888877765432  1     113333333 3467788887777652211


Q ss_pred             C------CCCCCCccEEEEEEcC
Q 006185          209 S------DMSLPNLTSFSITIGE  225 (657)
Q Consensus       209 ~------~~~l~~L~~L~l~~~~  225 (657)
                      .      ....+.|..|++.+|.
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCccc
Confidence            0      0235677777777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.47  E-value=4.8e-07  Score=90.34  Aligned_cols=165  Identities=16%  Similarity=0.227  Sum_probs=98.0

Q ss_pred             HhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccc
Q 006185          373 QSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV  452 (657)
Q Consensus       373 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~  452 (657)
                      ..+..++.|+|++| .++.+         |   ...++|+.|.+++|.+++.++..     -.++|++|.|.+|.++..+
T Consensus        49 ~~~~~l~~L~Is~c-~L~sL---------P---~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESL---------P---VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HHhcCCCEEEeCCC-CCccc---------C---CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCccccccc
Confidence            34678888888887 66655         2   12345888888888888775421     1357888888888766544


Q ss_pred             cccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcc
Q 006185          453 FPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQ  532 (657)
Q Consensus       453 ~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~  532 (657)
                                                            .++|+.|++. +..+..+     ..-+++|++|.+.++....
T Consensus       111 --------------------------------------P~sLe~L~L~-~n~~~~L-----~~LPssLk~L~I~~~n~~~  146 (426)
T PRK15386        111 --------------------------------------PESVRSLEIK-GSATDSI-----KNVPNGLTSLSINSYNPEN  146 (426)
T ss_pred             --------------------------------------ccccceEEeC-CCCCccc-----ccCcchHhheecccccccc
Confidence                                                  1345666664 3333222     1234567788775433111


Q ss_pred             eeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcc-eecCCCccccceec
Q 006185          533 EIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMK-TFGYGNQLTPKLLK  611 (657)
Q Consensus       533 ~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~-~lp~~~~~l~~~L~  611 (657)
                      ..     +        ....-.++|+.|.+.+|..+. +| .++.     .+|+.|.+..+.... .++...  +|.++ 
T Consensus       147 ~~-----~--------lp~~LPsSLk~L~Is~c~~i~-LP-~~LP-----~SLk~L~ls~n~~~sLeI~~~s--LP~nl-  203 (426)
T PRK15386        147 QA-----R--------IDNLISPSLKTLSLTGCSNII-LP-EKLP-----ESLQSITLHIEQKTTWNISFEG--FPDGL-  203 (426)
T ss_pred             cc-----c--------cccccCCcccEEEecCCCccc-Cc-cccc-----ccCcEEEecccccccccCcccc--ccccc-
Confidence            10     0        000124689999999998653 55 4443     799999997753221 133222  56777 


Q ss_pred             eeEeccceeec
Q 006185          612 GVEFGYCKYCW  622 (657)
Q Consensus       612 ~L~i~~C~~l~  622 (657)
                      .|.+.+|-++.
T Consensus       204 ~L~f~n~lkL~  214 (426)
T PRK15386        204 DIDLQNSVLLS  214 (426)
T ss_pred             EechhhhcccC
Confidence            88888886543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.44  E-value=2e-08  Score=104.75  Aligned_cols=188  Identities=27%  Similarity=0.287  Sum_probs=93.0

Q ss_pred             CCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185           16 FEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD   94 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~   94 (657)
                      +..+..+++..|.+..+.... .+++|+.|++.+|.+..+... +..+.+|++|++++|.|+++. .+..+..|+.|++.
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence            344444455555555433322 556666666666665544442 245666666666666665442 23445556666666


Q ss_pred             CCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185           95 YCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        95 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      +|. ++....+..++.|+.++++++.+..+... ...+.+++.+.+.+ +.+..+..  +..+..+..+++..+.+.   
T Consensus       149 ~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~---  221 (414)
T KOG0531|consen  149 GNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKIS---  221 (414)
T ss_pred             cCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhcccccce---
Confidence            665 55555555566666666666665544432 34555555555555 22322221  233333333343333321   


Q ss_pred             ccccccccccchhhhcCCCC--ccEEEeecCCCccC-CCCCCCCCccEEEEE
Q 006185          174 ESEEDTRSNAKFIELGALSR--LTSLHIDIPKGEIM-PSDMSLPNLTSFSIT  222 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~  222 (657)
                                ....+.....  |+.+++.++.+..+ .....+..+..+++.
T Consensus       222 ----------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~  263 (414)
T KOG0531|consen  222 ----------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS  263 (414)
T ss_pred             ----------eccCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence                      1122222222  66666666666555 233444455555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=5.5e-09  Score=96.52  Aligned_cols=172  Identities=23%  Similarity=0.207  Sum_probs=99.0

Q ss_pred             CCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCcEEEccCCCCCCCC---cccCCCCCCCEE
Q 006185           40 KLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLRTLRLDYCNHLPDL---SLIGELSGLEIL  114 (657)
Q Consensus        40 ~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L  114 (657)
                      .|++||+++..++ .--..+++.+++|+.|++.|+++. .+-..+.+-.+|+.|+++.|+.++.-   -.+.++..|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4677777776666 223344566777777777777664 34455666667777777777644432   335567777777


Q ss_pred             EeeCCCCC-----cccccccCCCCCCEEEccCCCCCC---CCchhHhhcCccCcEEEcccCccccccccccccccccchh
Q 006185          115 DLSKSDVN-----EIPVSFGRLSHLRLLDLTDCYNLE---LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFI  186 (657)
Q Consensus       115 ~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~  186 (657)
                      ++++|.+.     .+-..|+  .+|..|+++||...-   .+.. ...++++|.+||+++|....          .....
T Consensus       266 NlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~----------~~~~~  332 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLK----------NDCFQ  332 (419)
T ss_pred             CchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccC----------chHHH
Confidence            77777543     1112222  356667777653211   1111 13567777777777664321          13445


Q ss_pred             hhcCCCCccEEEeecCCC---ccCCCCCCCCCccEEEEEEc
Q 006185          187 ELGALSRLTSLHIDIPKG---EIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       187 ~l~~l~~L~~L~l~~~~~---~~~~~~~~l~~L~~L~l~~~  224 (657)
                      ++-+++.|++|+++.|..   +.+-.....+.|..|++.++
T Consensus       333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            566777777777776653   11112245677888887765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.6e-08  Score=93.53  Aligned_cols=56  Identities=25%  Similarity=0.236  Sum_probs=23.9

Q ss_pred             CCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185          111 LEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus       111 L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~  167 (657)
                      ||+||++...|+  .+...+..+.+|+.|.+.|...-..+... +.+-.+|+.|++++|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMC  244 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccc
Confidence            555555555444  33333444445555554442211122222 344444555554444

>PLN03150 hypothetical protein; Provisional

Probab=98.36  E-value=1.2e-06  Score=95.81  Aligned_cols=104  Identities=26%  Similarity=0.347  Sum_probs=84.7

Q ss_pred             CccEEEecCCcCC-CCCccccCCCCCcEEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEcc
Q 006185           64 DLKVLDLGGIRMV-SPPSSLSFLSNLRTLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLT  140 (657)
Q Consensus        64 ~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~  140 (657)
                      .++.|+|+++.+. .+|..++++++|++|++++|... ..|..++.+++|++|++++|.++ .+|+.++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4778889888885 68888889999999999988844 45678889999999999999887 788889999999999999


Q ss_pred             CCCCCCCCchhHhhc-CccCcEEEcccCc
Q 006185          141 DCYNLELIPPGVLSR-LRKLEELYMSHSF  168 (657)
Q Consensus       141 ~c~~~~~~~~~~~~~-l~~L~~L~l~~~~  168 (657)
                      +|...+.+|.. ++. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCc
Confidence            97777788877 444 4567788887774

>PLN03150 hypothetical protein; Provisional

Probab=98.35  E-value=1.1e-06  Score=96.04  Aligned_cols=106  Identities=25%  Similarity=0.233  Sum_probs=88.3

Q ss_pred             CCcEEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           87 NLRTLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        87 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                      .++.|+|+++... ..|..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            4788999999843 36788999999999999999997 88999999999999999997776788877 899999999999


Q ss_pred             ccCccccccccccccccccchhhhcCC-CCccEEEeecCCC
Q 006185          165 SHSFCHWQFESEEDTRSNAKFIELGAL-SRLTSLHIDIPKG  204 (657)
Q Consensus       165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~  204 (657)
                      ++|.+..           ..+..++.. .++..+++.+|..
T Consensus       498 s~N~l~g-----------~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSG-----------RVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccc-----------cCChHHhhccccCceEEecCCcc
Confidence            9986542           566666653 4677888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.35  E-value=4.4e-08  Score=102.22  Aligned_cols=177  Identities=27%  Similarity=0.337  Sum_probs=123.7

Q ss_pred             CCCCCCCccEEEccCCCccccCC-CCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185           12 SINTFEDLTGISLMFNDIHEVPD-GLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT   90 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~   90 (657)
                      .+..++++..|++..|.+..+.. ...+++|++|++++|.+.++..  +..++.|+.|++++|.+..+.. +..++.|+.
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~  166 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKL  166 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-Cccchhhhc
Confidence            36778999999999999998888 4589999999999999998877  6788889999999998876543 455889999


Q ss_pred             EEccCCCCCCCCcc--cCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCc--cCcEEEccc
Q 006185           91 LRLDYCNHLPDLSL--IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR--KLEELYMSH  166 (657)
Q Consensus        91 L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~--~L~~L~l~~  166 (657)
                      +++++|. +.....  ...+.+++.+.+.++.+..+. .+..+..+..+++.. +.+..+..  +..+.  +|+++++.+
T Consensus       167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  167 LDLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYLSG  241 (414)
T ss_pred             ccCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhccc
Confidence            9999998 444444  688899999999998877542 333444444445555 22322221  22233  377788777


Q ss_pred             CccccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185          167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP  208 (657)
Q Consensus       167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  208 (657)
                      +.+..            ....+..+.++..|++..+.+..+.
T Consensus       242 n~i~~------------~~~~~~~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  242 NRISR------------SPEGLENLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             Ccccc------------ccccccccccccccchhhccccccc
Confidence            75531            1144666667777777666554333

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=5e-09  Score=108.02  Aligned_cols=176  Identities=23%  Similarity=0.210  Sum_probs=123.6

Q ss_pred             CCCCCCCccEEEccCCCccccCCCCC-CCCCcEEEecCCc----------CcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGLE-CPKLQALFLQKNH----------LLVIPDPFFQGMKDLKVLDLGGIRMVSPPS   80 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~----------~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~   80 (657)
                      .+..++.||+|-+.++.++.+..... -..|+.|...+.-          ..++..+.  ....|.+.+.++|.+..+..
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHH
Confidence            46778899999999988875433221 1234444432211          11222211  23467788888888888888


Q ss_pred             cccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL  159 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L  159 (657)
                      ++.-++.|+.|+|++|+ .+....+..|++|++||+++|.++.+|.- ...++ |+.|.+++ +.++.+-.  +.++++|
T Consensus       182 SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~g--ie~LksL  256 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTLRG--IENLKSL  256 (1096)
T ss_pred             HHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhhhh--HHhhhhh
Confidence            88888999999999998 66666888999999999999998888763 44554 89999998 56666654  7899999


Q ss_pred             cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      +.||+++|-+..          -....-+..+..|+.|++.+|.+
T Consensus       257 ~~LDlsyNll~~----------hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  257 YGLDLSYNLLSE----------HSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hccchhHhhhhc----------chhhhHHHHHHHHHHHhhcCCcc
Confidence            999998885431          12334466677888888888765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.34  E-value=1.5e-07  Score=89.44  Aligned_cols=19  Identities=16%  Similarity=0.039  Sum_probs=9.3

Q ss_pred             hhhhcCCCCccEEEeecCC
Q 006185          185 FIELGALSRLTSLHIDIPK  203 (657)
Q Consensus       185 ~~~l~~l~~L~~L~l~~~~  203 (657)
                      ...+..+++|+.|++..|.
T Consensus       206 ~eal~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  206 AEALEHCPHLEVLDLRDNT  224 (382)
T ss_pred             HHHHHhCCcceeeecccch
Confidence            3444455555555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.23  E-value=1e-07  Score=102.56  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=21.4

Q ss_pred             cCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcce
Q 006185          557 LFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKT  598 (657)
Q Consensus       557 L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~  598 (657)
                      ++.|.+..|...+.-. .... ...+..++.+.+.+|+.+..
T Consensus       403 l~~L~l~~~~~~t~~~-l~~~-~~~~~~~~~l~~~~~~~~~~  442 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKG-LRCL-ADSCSNLKDLDLSGCRVITL  442 (482)
T ss_pred             cceEecccCccccccc-hHHH-hhhhhccccCCccCcccccc
Confidence            6666666666555433 2211 11146666666666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.17  E-value=5.3e-07  Score=98.09  Aligned_cols=132  Identities=22%  Similarity=0.202  Sum_probs=92.6

Q ss_pred             CCCCCcEEEecCCcCc--CCCchhhcCCCCccEEEecCCcCC--CCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCC
Q 006185           37 ECPKLQALFLQKNHLL--VIPDPFFQGMKDLKVLDLGGIRMV--SPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLE  112 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  112 (657)
                      .-.+|++|+++|....  ..+..+...++.||.|.+++-.+.  ++.....++++|+.||+++++ ++....+++|++||
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq  198 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQ  198 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHH
Confidence            3467888888886544  556666677888888888887653  344556678888888888888 77778888888888


Q ss_pred             EEEeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCchh---H---hhcCccCcEEEcccCccc
Q 006185          113 ILDLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPPG---V---LSRLRKLEELYMSHSFCH  170 (657)
Q Consensus       113 ~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~~---~---~~~l~~L~~L~l~~~~~~  170 (657)
                      +|.+.+-.+..-.  ..+-+|++|++||++.-... ..+.-   .   -..+++|+.||.+++.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8888887776433  34677888888888873322 22211   0   124788899998877544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=8.9e-07  Score=96.35  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             CCCccEEEecCCcC-C-CCCcccc-CCCCCcEEEccCCCCCCC--CcccCCCCCCCEEEeeCCCCCcccccccCCCCCCE
Q 006185           62 MKDLKVLDLGGIRM-V-SPPSSLS-FLSNLRTLRLDYCNHLPD--LSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRL  136 (657)
Q Consensus        62 l~~Lr~L~L~~~~~-~-~lp~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  136 (657)
                      -.+|++|+++|... . .=|..++ .+++|+.|.+.+-....+  -....++++|+.||+++++++.+ .++++|++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            46899999998643 2 2334454 588999999998663222  24556889999999999999988 68999999999


Q ss_pred             EEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          137 LDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       137 L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      |.+++-.......-..+.+|++|++||++.........     ....-.+--..+++||.|+.+++..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----IIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-----HHHHHHHhcccCccccEEecCCcch
Confidence            98888433322222237789999999998764321110     0001122223578999999998765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.12  E-value=1.7e-07  Score=100.94  Aligned_cols=246  Identities=20%  Similarity=0.247  Sum_probs=121.6

Q ss_pred             cccccEEeccccccccccccccCCCCCCCCccEEEEecC-CCccccc--chhHHHhcccCcEEEEcccccceeeeecccc
Q 006185          322 LRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGC-GSMLKIL--PSHLVQSFQNLQRLMVESCELLVSVFEIERV  398 (657)
Q Consensus       322 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~--p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  398 (657)
                      ++.|+.|.+.+|..+.+.... .....++.|+.|++++| .......  .......+++|+.|++..|..+++.. +.  
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~--  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LS--  262 (482)
T ss_pred             CchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HH--
Confidence            577777777777655432100 11225677777777763 2222211  12233456677777777766544331 00  


Q ss_pred             cccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceee
Q 006185          399 NIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHI  478 (657)
Q Consensus       399 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~  478 (657)
                          .-...+++|+.|.+.+|+.+++- ........+++|++|++++|..+++..         +..+ .          
T Consensus       263 ----~l~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~---------l~~~-~----------  317 (482)
T KOG1947|consen  263 ----ALASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSG---------LEAL-L----------  317 (482)
T ss_pred             ----HHHhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHH---------HHHH-H----------
Confidence                00123667777777777665441 111122346667777777776664321         1111 0          


Q ss_pred             cccccCCCCCCCCCCccEEE---EecCCCcceecccchhhcc-cCCcEEEEecCCCcceeeeCcCceecccCCCcceEec
Q 006185          479 HATTSTSSPTPSLGNLVSIT---IRGCGKLRNLFTTSMVKSL-VRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITF  554 (657)
Q Consensus       479 ~~~~~~~~~~~~~~~L~~L~---i~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~  554 (657)
                                ..+++|+.+.   +.+|+.+++.......... ..+..+.+.+|++++.+....-             ..
T Consensus       318 ----------~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~-------------~~  374 (482)
T KOG1947|consen  318 ----------KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC-------------GI  374 (482)
T ss_pred             ----------HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh-------------hc
Confidence                      0223333322   2334556554322222222 2677777777777765521100             01


Q ss_pred             cccC-eeEcCcCCCcc-ccccCCCcceeeccccceeeeccCCCcceecCCCccc-cceeceeEeccceeecc
Q 006185          555 PSLF-SIKLCDLGSLT-CFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLT-PKLLKGVEFGYCKYCWT  623 (657)
Q Consensus       555 ~~L~-~L~l~~c~~l~-~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l-~~~L~~L~i~~C~~l~~  623 (657)
                      .... .+.+.+|+.++ .+.   .. ...+.+++.|.+..|...+.--.....- ...+..+.+.+|+..+.
T Consensus       375 ~~~~~~~~l~gc~~l~~~l~---~~-~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~  442 (482)
T KOG1947|consen  375 SDLGLELSLRGCPNLTESLE---LR-LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL  442 (482)
T ss_pred             cCcchHHHhcCCcccchHHH---HH-hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence            1222 56777777773 332   11 1123448888888888777532111100 24467777888876653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=7e-06  Score=54.36  Aligned_cols=34  Identities=38%  Similarity=0.486  Sum_probs=13.7

Q ss_pred             CccEEEecCCcCCCCCccccCCCCCcEEEccCCC
Q 006185           64 DLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        64 ~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~   97 (657)
                      +|++|++++|+++++|..+++|++|++|++++|.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            3444444444444444434444444444444443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=4.2e-07  Score=74.41  Aligned_cols=88  Identities=23%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             CCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEee
Q 006185           38 CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLS  117 (657)
Q Consensus        38 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  117 (657)
                      ..+|...++++|.+.++|+.+-.+++.+..|++++|.+.++|..+..++.||.|+++.|.....|..+..|.+|-+|+..
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            34445555555555555555444444555555555555555555555555555555555544444444444444444444


Q ss_pred             CCCCCccc
Q 006185          118 KSDVNEIP  125 (657)
Q Consensus       118 ~~~i~~lp  125 (657)
                      ++.+..+|
T Consensus       132 ~na~~eid  139 (177)
T KOG4579|consen  132 ENARAEID  139 (177)
T ss_pred             CCccccCc
Confidence            44444333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=2.4e-05  Score=51.80  Aligned_cols=39  Identities=31%  Similarity=0.547  Sum_probs=23.0

Q ss_pred             CCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCc
Q 006185          110 GLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP  149 (657)
Q Consensus       110 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~  149 (657)
                      +|++|++++|.|+.+|..+++|++|++|++++| .+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            566666666666666666666666666666663 344443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.84  E-value=3e-05  Score=68.35  Aligned_cols=123  Identities=25%  Similarity=0.259  Sum_probs=87.0

Q ss_pred             CccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc-CCCCCcEEEccC
Q 006185           18 DLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS-FLSNLRTLRLDY   95 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~-~l~~L~~L~l~~   95 (657)
                      .=+.+++.+..+..+...- -..+...+++++|.+..++.  |..++.|.+|.+.+|+|+.+...+. .+++|..|.+.+
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            3455666666554443322 44567788888888777766  7788888888888888887766665 356688888888


Q ss_pred             CCC--CCCCcccCCCCCCCEEEeeCCCCCcccc----cccCCCCCCEEEccCC
Q 006185           96 CNH--LPDLSLIGELSGLEILDLSKSDVNEIPV----SFGRLSHLRLLDLTDC  142 (657)
Q Consensus        96 ~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~c  142 (657)
                      |+.  +.+...+..++.|++|.+-++.++.-+.    .+.++++|++||..+.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            872  3345667778888888888887774432    3778889999988773

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=3.2e-05  Score=68.15  Aligned_cols=102  Identities=23%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC--ccccCCCCCcEEEccC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP--SSLSFLSNLRTLRLDY   95 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp--~~~~~l~~L~~L~l~~   95 (657)
                      +.-.++++.|++..++....++.|.+|.+.+|.++.+.+.+-..+++|..|.+.+|++.++.  ..+..|+.|++|.+-+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            44456666666665555446666666666666666666555455566666666666665442  2345666666666666


Q ss_pred             CCCCCCC----cccCCCCCCCEEEeeCC
Q 006185           96 CNHLPDL----SLIGELSGLEILDLSKS  119 (657)
Q Consensus        96 ~~~~~~~----~~~~~l~~L~~L~l~~~  119 (657)
                      |......    ..+.++++|++||..+.
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhh
Confidence            6633222    45666666666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.83  E-value=2.1e-07  Score=96.32  Aligned_cols=123  Identities=27%  Similarity=0.276  Sum_probs=80.8

Q ss_pred             CCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEc
Q 006185           16 FEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRL   93 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l   93 (657)
                      +.+|.+.+.++|.+..+...+ -++.|+.|++++|++.+...  +..+.+|++|||++|++..+|.. ...|+ |+.|++
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~--Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN--LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH--HHhcccccccccccchhccccccchhhhh-heeeee
Confidence            455666677777766666555 56677777777777775552  57777777777777777766653 23344 777777


Q ss_pred             cCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCC
Q 006185           94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDC  142 (657)
Q Consensus        94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c  142 (657)
                      ++|. ++....+.+|++|+.||+++|-+....+  -++.|..|+.|.+.|+
T Consensus       240 rnN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  240 RNNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             cccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            7777 6666667777777777777775553221  2455566667777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.81  E-value=1.2e-05  Score=73.83  Aligned_cols=81  Identities=23%  Similarity=0.279  Sum_probs=41.6

Q ss_pred             CCCCccEEEecCCcCC-----CCCccccCCCCCcEEEccCCCCC--CC---------CcccCCCCCCCEEEeeCCCCC-c
Q 006185           61 GMKDLKVLDLGGIRMV-----SPPSSLSFLSNLRTLRLDYCNHL--PD---------LSLIGELSGLEILDLSKSDVN-E  123 (657)
Q Consensus        61 ~l~~Lr~L~L~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~--~~---------~~~~~~l~~L~~L~l~~~~i~-~  123 (657)
                      .+..+..++||||.|.     .+...|.+-.+|+..+++.-...  .+         ...+-++++|+..+++.|-+. .
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3555666666666553     13334445555666655543311  00         133456666666666666544 3


Q ss_pred             cccc----ccCCCCCCEEEccC
Q 006185          124 IPVS----FGRLSHLRLLDLTD  141 (657)
Q Consensus       124 lp~~----i~~l~~L~~L~l~~  141 (657)
                      .|+.    |++-+.|.||.+++
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~N  129 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNN  129 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeec
Confidence            3332    44555666666665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.58  E-value=6.8e-06  Score=67.46  Aligned_cols=89  Identities=22%  Similarity=0.244  Sum_probs=80.7

Q ss_pred             CCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT   90 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~   90 (657)
                      +.+...|+..++++|.+.++|+.+  +++.+++|++++|.+.++|.+ |..++.||.|+++.|.+...|..|..+.+|-+
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence            456678888999999999999887  778999999999999999999 69999999999999999999999999999999


Q ss_pred             EEccCCCCCCCC
Q 006185           91 LRLDYCNHLPDL  102 (657)
Q Consensus        91 L~l~~~~~~~~~  102 (657)
                      |+..++...+.+
T Consensus       128 Lds~~na~~eid  139 (177)
T KOG4579|consen  128 LDSPENARAEID  139 (177)
T ss_pred             hcCCCCccccCc
Confidence            999999855555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=4.4e-05  Score=71.26  Aligned_cols=68  Identities=13%  Similarity=0.035  Sum_probs=34.7

Q ss_pred             HHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEecccccc
Q 006185          263 IKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQN  335 (657)
Q Consensus       263 ~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (657)
                      +...|+++..+.+..|+- .+....-+.+.+|.+--|++..+ ++.+   +........|++|..|.+.+.+-
T Consensus       194 l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~~-~ids---wasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  194 LSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSCLNLGAN-NIDS---WASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             HHhhcccchheeeecCcc-cchhhcccCCCCCcchhhhhccc-cccc---HHHHHHHcCCchhheeeccCCcc
Confidence            344567777777766632 11111112234566656666555 2222   11112445677777777776663

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.00013  Score=68.22  Aligned_cols=181  Identities=17%  Similarity=0.076  Sum_probs=98.3

Q ss_pred             CCCCCccEEEccCCCcccc---CCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC--CCCCccccCCCC
Q 006185           14 NTFEDLTGISLMFNDIHEV---PDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM--VSPPSSLSFLSN   87 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l---~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~--~~lp~~~~~l~~   87 (657)
                      ..++.++.++|..|.|++-   .... ++|.|++|+++.|.+.....+.=.-.++|++|-|.|+.+  +..-..+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            3467888889999988743   3333 788999999998886622221102567889999988865  455566677777


Q ss_pred             CcEEEccCCCCC---CCCcccCCC-CCCCEEEeeCCCCC---cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCc
Q 006185           88 LRTLRLDYCNHL---PDLSLIGEL-SGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLE  160 (657)
Q Consensus        88 L~~L~l~~~~~~---~~~~~~~~l-~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~  160 (657)
                      ++.|.++.|+.-   -+-..+... +.+++|+..+|...   ..-.--...+++..+-+..|..-+.-...-...++.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            777777777411   111111111 24455555555322   11011112345555555544211111111023344444


Q ss_pred             EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          161 ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       161 ~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      .|+++.+.+..          -+.+.++.+++.|+-|.+..+.+
T Consensus       228 ~LnL~~~~ids----------wasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  228 CLNLGANNIDS----------WASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             hhhhccccccc----------HHHHHHHcCCchhheeeccCCcc
Confidence            55555544321          15566677777777777766554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.17  E-value=0.0015  Score=55.87  Aligned_cols=117  Identities=17%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEE
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILD  115 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  115 (657)
                      ++++|+.+.+.. .+..++...|.++++|+.+.+..+ +..++ ..|.++.+|+.+.+.++...-....+..+.+|+.++
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccc
Confidence            455666666553 344555555666666666666553 44433 244555556666665422111124455566666666


Q ss_pred             eeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185          116 LSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL  159 (657)
Q Consensus       116 l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L  159 (657)
                      +..+ +..++.. +.+. +|+.+.+..  .+..++...+.++++|
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            6443 4444332 4454 666665543  3344444445555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.82  E-value=0.00048  Score=63.71  Aligned_cols=83  Identities=27%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCc--CC-CCCccccCCCCCcEEEccCCCCCCCC---cccCCCCC
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR--MV-SPPSSLSFLSNLRTLRLDYCNHLPDL---SLIGELSG  110 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--~~-~lp~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~  110 (657)
                      .+..|+.|++.+..++++..  |-.+++|++|.++.|+  +. .++-...++++|++|++++|+ +.++   ..+.++.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcc
Confidence            44455555555555444333  3445555555555552  21 233333344555555555555 2222   22333444


Q ss_pred             CCEEEeeCCCCC
Q 006185          111 LEILDLSKSDVN  122 (657)
Q Consensus       111 L~~L~l~~~~i~  122 (657)
                      |..|++..|..+
T Consensus       118 L~~Ldl~n~~~~  129 (260)
T KOG2739|consen  118 LKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcccCCcc
Confidence            444444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.70  E-value=0.0055  Score=52.26  Aligned_cols=118  Identities=18%  Similarity=0.294  Sum_probs=67.7

Q ss_pred             CCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCC
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNL   88 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L   88 (657)
                      ++..+++|+.+.+.. .+..+++..  .+++|+.+.+.++ +..++...|.+++.|+.+.+.. .+..++ ..|..+.+|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            367788999999874 678887776  7889999999885 7788888899999999999976 454444 467789999


Q ss_pred             cEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCC
Q 006185           89 RTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHL  134 (657)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L  134 (657)
                      +.+.+..+-..-....+.+. +|+.+.+.. .+..++.. +.++++|
T Consensus        84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            99999764211224667787 999998876 55555443 6666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.68  E-value=0.001  Score=61.58  Aligned_cols=105  Identities=26%  Similarity=0.302  Sum_probs=73.6

Q ss_pred             CCCCCccEEEccCCCccccCCCCCCCCCcEEEecCC--cCc-CCCchhhcCCCCccEEEecCCcCCCC--CccccCCCCC
Q 006185           14 NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKN--HLL-VIPDPFFQGMKDLKVLDLGGIRMVSP--PSSLSFLSNL   88 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~l--p~~~~~l~~L   88 (657)
                      ..+..+..+++.+..++.+.....+++|+.|.++.|  +.. .++.-+ .++++|++|++++|++.-+  -..+..+.+|
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcch
Confidence            445677777777777777766668899999999999  444 455443 5679999999999988642  2345678889


Q ss_pred             cEEEccCCCCCC--CC--cccCCCCCCCEEEeeCC
Q 006185           89 RTLRLDYCNHLP--DL--SLIGELSGLEILDLSKS  119 (657)
Q Consensus        89 ~~L~l~~~~~~~--~~--~~~~~l~~L~~L~l~~~  119 (657)
                      ..|++.+|....  +.  ..+.-+++|.+||-...
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            999999998333  22  33444556666554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=6.8e-05  Score=69.36  Aligned_cols=80  Identities=25%  Similarity=0.222  Sum_probs=56.5

Q ss_pred             CCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc--cccCCCCCcEEEc
Q 006185           16 FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS--SLSFLSNLRTLRL   93 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~--~~~~l~~L~~L~l   93 (657)
                      +.+++.|++-++++++|.-..+|+.|++|.++-|.++++..  |..+++|+.|.|..|.|.++-+  .+.++++||+|.|
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            45667777777777766644477777777777777777666  6777777777777777765543  4567777777777


Q ss_pred             cCCC
Q 006185           94 DYCN   97 (657)
Q Consensus        94 ~~~~   97 (657)
                      ..|.
T Consensus        96 ~ENP   99 (388)
T KOG2123|consen   96 DENP   99 (388)
T ss_pred             ccCC
Confidence            7665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.0002  Score=66.37  Aligned_cols=81  Identities=26%  Similarity=0.405  Sum_probs=51.1

Q ss_pred             CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCch-hHhhcCccCcEEE
Q 006185           85 LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPP-GVLSRLRKLEELY  163 (657)
Q Consensus        85 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~-~~~~~l~~L~~L~  163 (657)
                      +.+.+.|+..||. +.+++...+++.|++|.|+-|+|+++. .+.++++|++|+++. +.+.++.. ..+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence            4455666777776 677777777777777777777777663 466777777777776 33444322 1244566666666


Q ss_pred             cccCc
Q 006185          164 MSHSF  168 (657)
Q Consensus       164 l~~~~  168 (657)
                      +..|.
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            65554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.34  E-value=0.003  Score=58.58  Aligned_cols=185  Identities=17%  Similarity=0.138  Sum_probs=122.5

Q ss_pred             CCCCCCccEEEccCCCcc----ccC--------CCCCCCCCcEEEecCCcCc-CCCc---hhhcCCCCccEEEecCCcCC
Q 006185           13 INTFEDLTGISLMFNDIH----EVP--------DGLECPKLQALFLQKNHLL-VIPD---PFFQGMKDLKVLDLGGIRMV   76 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~----~l~--------~~~~~~~L~~L~l~~~~~~-~~~~---~~~~~l~~Lr~L~L~~~~~~   76 (657)
                      ++.-++|+..+++.-...    .++        ...+|++|+..++++|.+. ..|+   .+++....|.+|.+++|.+.
T Consensus        54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            455678888888775533    222        2348999999999999887 4443   44688899999999999875


Q ss_pred             CC-----C---------ccccCCCCCcEEEccCCCCCCCCc-----ccCCCCCCCEEEeeCCCCCc------ccccccCC
Q 006185           77 SP-----P---------SSLSFLSNLRTLRLDYCNHLPDLS-----LIGELSGLEILDLSKSDVNE------IPVSFGRL  131 (657)
Q Consensus        77 ~l-----p---------~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~i~~------lp~~i~~l  131 (657)
                      .+     .         ....+-+.|++.+...|.....+.     .+..=.+|+++.+..|.|..      +...+..+
T Consensus       134 p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~  213 (388)
T COG5238         134 PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS  213 (388)
T ss_pred             ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh
Confidence            32     1         123355789999999888444442     22233689999999998871      12235678


Q ss_pred             CCCCEEEccCCCCCCCCc---hhHhhcCccCcEEEcccCccccccccccccccccchhhhc--CCCCccEEEeecCCC
Q 006185          132 SHLRLLDLTDCYNLELIP---PGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG--ALSRLTSLHIDIPKG  204 (657)
Q Consensus       132 ~~L~~L~l~~c~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~  204 (657)
                      ++|+.||+.++.....-.   ..++...+.|++|.+..|-...  .|+     .+....+.  ..++|..|...+|..
T Consensus       214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~--~G~-----~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN--EGV-----KSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc--ccH-----HHHHHHhhhhcCCCccccccchhhh
Confidence            999999999964332211   1124556779999999986643  231     12333332  346788888887764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00025  Score=62.71  Aligned_cols=71  Identities=18%  Similarity=0.331  Sum_probs=47.0

Q ss_pred             CCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCC
Q 006185          488 TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGS  567 (657)
Q Consensus       488 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  567 (657)
                      +..+++++.|.+.+|..+.+-....+.+-.++|+.|+|++|+.|++.     |+.+       +..+++|+.|.|.+++.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~~-------L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLAC-------LLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHHH-------HHHhhhhHHHHhcCchh
Confidence            34667778888888888777554444456677888888888777743     4422       22477777777777665


Q ss_pred             ccc
Q 006185          568 LTC  570 (657)
Q Consensus       568 l~~  570 (657)
                      ...
T Consensus       189 v~~  191 (221)
T KOG3864|consen  189 VAN  191 (221)
T ss_pred             hhc
Confidence            544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.003  Score=34.59  Aligned_cols=21  Identities=48%  Similarity=0.749  Sum_probs=14.5

Q ss_pred             CCCEEEeeCCCCCcccccccC
Q 006185          110 GLEILDLSKSDVNEIPVSFGR  130 (657)
Q Consensus       110 ~L~~L~l~~~~i~~lp~~i~~  130 (657)
                      +|++||+++|.++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.0018  Score=57.44  Aligned_cols=68  Identities=21%  Similarity=0.323  Sum_probs=45.6

Q ss_pred             cccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccc
Q 006185          320 VTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELL  389 (657)
Q Consensus       320 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l  389 (657)
                      ..++.++.|.+.+|..+.+|+...+.. ..++|+.|+|++|+.+++-.-. ....+++|+.|.+.+.+.+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhh
Confidence            346777777788888777776655544 5678888888888888774333 3356677777777665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.0033  Score=34.42  Aligned_cols=21  Identities=48%  Similarity=0.619  Sum_probs=12.5

Q ss_pred             CccEEEecCCcCCCCCccccC
Q 006185           64 DLKVLDLGGIRMVSPPSSLSF   84 (657)
Q Consensus        64 ~Lr~L~L~~~~~~~lp~~~~~   84 (657)
                      +|++|++++|+++++|..|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.34  E-value=0.03  Score=28.31  Aligned_cols=16  Identities=38%  Similarity=0.696  Sum_probs=7.2

Q ss_pred             CCCEEEeeCCCCCccc
Q 006185          110 GLEILDLSKSDVNEIP  125 (657)
Q Consensus       110 ~L~~L~l~~~~i~~lp  125 (657)
                      +|++|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655554

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.10  E-value=0.032  Score=28.20  Aligned_cols=15  Identities=40%  Similarity=0.600  Sum_probs=6.1

Q ss_pred             CccEEEecCCcCCCC
Q 006185           64 DLKVLDLGGIRMVSP   78 (657)
Q Consensus        64 ~Lr~L~L~~~~~~~l   78 (657)
                      +|++|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.21  E-value=0.0029  Score=57.32  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=73.2

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL  116 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  116 (657)
                      .++..+.||++.|....+... |+.+..|..|+++.+++..+|..++.+..++.+++..|.....|.++++.+++++++.
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            678888999998887766665 5788889999999999999999999999999999988886778999999999999999


Q ss_pred             eCCCCC
Q 006185          117 SKSDVN  122 (657)
Q Consensus       117 ~~~~i~  122 (657)
                      .++.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            988755

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.86  E-value=0.0023  Score=57.98  Aligned_cols=82  Identities=20%  Similarity=0.121  Sum_probs=47.6

Q ss_pred             cCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEc
Q 006185           60 QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDL  139 (657)
Q Consensus        60 ~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  139 (657)
                      ...+...+||++.++.-.+-..|+-+..|.-|+++.+..-..|..++.+..++.+++..|+.+..|.++++++++++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            44555556666666555555555555555566666555334555556666666666666666666666666666666655


Q ss_pred             cC
Q 006185          140 TD  141 (657)
Q Consensus       140 ~~  141 (657)
                      .+
T Consensus       119 k~  120 (326)
T KOG0473|consen  119 KK  120 (326)
T ss_pred             cc
Confidence            55

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.67  E-value=0.23  Score=28.36  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=11.1

Q ss_pred             CCCcEEEecCCcCcCCCchhh
Q 006185           39 PKLQALFLQKNHLLVIPDPFF   59 (657)
Q Consensus        39 ~~L~~L~l~~~~~~~~~~~~~   59 (657)
                      ++|++|++++|.+..+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.67  E-value=0.23  Score=28.36  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=11.1

Q ss_pred             CCCcEEEecCCcCcCCCchhh
Q 006185           39 PKLQALFLQKNHLLVIPDPFF   59 (657)
Q Consensus        39 ~~L~~L~l~~~~~~~~~~~~~   59 (657)
                      ++|++|++++|.+..+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.14  E-value=0.21  Score=28.58  Aligned_cols=16  Identities=19%  Similarity=0.468  Sum_probs=9.7

Q ss_pred             cccceeeeccCCCcce
Q 006185          583 LALEALQIIDCPGMKT  598 (657)
Q Consensus       583 ~sL~~L~i~~C~~l~~  598 (657)
                      ++|++|++++|+++++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            5566666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.71  E-value=0.35  Score=27.53  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=12.6

Q ss_pred             CCCCCEEEeeCCCCCccccc
Q 006185          108 LSGLEILDLSKSDVNEIPVS  127 (657)
Q Consensus       108 l~~L~~L~l~~~~i~~lp~~  127 (657)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.71  E-value=0.35  Score=27.53  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=12.6

Q ss_pred             CCCCCEEEeeCCCCCccccc
Q 006185          108 LSGLEILDLSKSDVNEIPVS  127 (657)
Q Consensus       108 l~~L~~L~l~~~~i~~lp~~  127 (657)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.40  E-value=0.32  Score=27.77  Aligned_cols=18  Identities=17%  Similarity=0.479  Sum_probs=14.2

Q ss_pred             cCCccEEEeccCcccccc
Q 006185          435 LHNLKKVRVEECDELRQV  452 (657)
Q Consensus       435 ~~~L~~L~i~~C~~L~~~  452 (657)
                      +++|++|++++|+++++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            467888888888888774

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=82.31  E-value=0.012  Score=61.65  Aligned_cols=13  Identities=15%  Similarity=0.074  Sum_probs=6.8

Q ss_pred             CCccEEEeecCCC
Q 006185          192 SRLTSLHIDIPKG  204 (657)
Q Consensus       192 ~~L~~L~l~~~~~  204 (657)
                      ..++++++..|++
T Consensus       262 ~~l~~l~l~~nsi  274 (478)
T KOG4308|consen  262 ETLRVLDLSRNSI  274 (478)
T ss_pred             hhhhhhhhhcCCc
Confidence            4445555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	657
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		9e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-04

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 11  PSINTFEDLTGISLMFNDIHEVP-DGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
           PS+NT E      L  N +  VP    E   KL+ L+L+ N +  IP   F  +  L+ L
Sbjct: 83  PSLNTLE------LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 69  DLGGIRMVXXXXXXX--XXXNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-P 125
           DLG ++ +            NLR L L  CN L D+  +  L  LE L+LS + ++ I P
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
            SF  L+ LR L L     +  I       L+ LEEL +SH+
Sbjct: 196 GSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNLSHN 236

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 11  PSINTFEDLTGISLMFNDIHEVP-DGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
           PS+NT E      L  N +  VP    E   KL+ L+L+ N +  IP   F  +  L+ L
Sbjct: 83  PSLNTLE------LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 69  DLGGIRMVXXXXXXXXX--XNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-P 125
           DLG ++ +            NLR L L  CN L D+  +  L  LE L+LS + ++ I P
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
            SF  L+ LR L L     +  I       L+ LEEL +SH+
Sbjct: 196 GSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNLSHN 236

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 12  SINTFEDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
           + N   +L  + L  N +  +P+G  +   KL+ L+L+ N +  IP   F  +  L+ LD
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 70  LGGIRMVXXXXXXX--XXXNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEI- 124
           LG ++ +            NLR L L  CN   +P+L+    L  L+ LDLS + ++ I 
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIR 223
Query: 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
           P SF  L HL+ L +     +++I       L+ L E+ ++H+
Sbjct: 224 PGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN 265

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 12  SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
           + N    L  + L  N +  +P G      KL+ L+L+ N +  IP   F  +  L  LD
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 70  LGGIRMVXXXX--XXXXXXNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-PV 126
           LG ++ +            NL+ L L  CN + D+  +  L GLE L++S +   EI P 
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPG 236
Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
           SF  LS L+ L + +   + LI       L  L EL ++H+
Sbjct: 237 SFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	657
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (278), Expect = 1e-25
 Identities = 73/427 (17%), Positives = 140/427 (32%), Gaps = 57/427 (13%)

Query: 23  SLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSS 81
                    +P GL    +++L L  N +  I     +   +L+VL L   R+ +    +
Sbjct: 11  DGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 82  LSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS--FGRLSHLRLL 137
              L +L  L L   NHL  LS    G LS L+ L+L  +    + V+  F  L++L+ L
Sbjct: 70  FYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 138 DLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSL 197
            + +      I     + L  L EL +          +           +  +L  +  +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKAL----SLRN----------YQSQSLKSIRDI 174

Query: 198 HIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRIS 257
           H            + L             D L+    L L + N    +   L  D   S
Sbjct: 175 HH---------LTLHLSESAFLLEIFA--DILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 258 ALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERT 317
            +        + ++  +  E+  L      L+  +F++     +   N      + +   
Sbjct: 224 PMKKLAFRGSVLTD-ESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--PSESDVVSEL 280

Query: 318 QRVTLRKLEWLFIRENQNFVEICHGQLPAGC---LSNVKRLDVVGCGSMLKILPSHLVQS 374
            +V    +  L I +   F         +     L  VKR+ V      + ++P    Q 
Sbjct: 281 GKVETVTIRRLHIPQFYLF------YDLSTVYSLLEKVKRITVENSK--VFLVPCSFSQH 332

Query: 375 FQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLP--RMTDIWKGDTQF 432
            ++L+ L +    +         V    + +    +   L  + L    +  + K     
Sbjct: 333 LKSLEFLDLSENLM---------VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 433 VSLHNLK 439
           ++L NL 
Sbjct: 384 LTLKNLT 390

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.3 bits (240), Expect = 5e-21
 Identities = 63/446 (14%), Positives = 140/446 (31%), Gaps = 70/446 (15%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
            +    +L  + L  + I+ +          L+ L L  NHL  +   +F  +  LK L+
Sbjct: 45  DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 70  LGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIP 125
           L G   + +   S    L+NL+TLR+       ++       L+ L  L++    +    
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 126 V-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK 184
             S   +  +  L L        +       L  +  L +  +       S       + 
Sbjct: 165 SQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 185 FIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRC 244
            ++  A              E++     +  L+         + L DF     +  ++  
Sbjct: 224 PMKKLAFRGSVLTDESFN--ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281

Query: 245 S------RAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENI----FSNLAND--- 291
                  R + + Q   +    S + +LL + + + +   + +  +      +L +    
Sbjct: 282 KVETVTIRRLHIPQ-FYLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFL 339

Query: 292 --DFNELMFLYIFGCNEMKCL------------LNSLERTQRVT--LRKLEWLFIRENQN 335
               N ++  Y+                     L S+++T  +   L+ L  L I  N  
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT- 398

Query: 336 FVEICHGQLPAGC--LSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVF 393
                   +P  C     ++ L++      ++++ + +    Q L+ L V +  L     
Sbjct: 399 -----FHPMPDSCQWPEKMRFLNLSST--GIRVVKTCI---PQTLEVLDVSNNNL----- 443

Query: 394 EIERVNIAKEETELFSSLEKLTLIDL 419
                            L +L  + +
Sbjct: 444 -----------DSFSLFLPRLQELYI 458

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 24/170 (14%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDP--FFQGMKDLKVLDLGGIRM 75
           DL+   ++   +         P LQ L L +NHL  +         +K+L  LD+     
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 76  VSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLR 135
              P S  +   +R L L     +  +        LE+LD+S ++++   +   RL  L 
Sbjct: 400 HPMPDSCQWPEKMRFLNLSS-TGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457

Query: 136 L-------------------LDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           +                   + ++    L+ +P G+  RL  L+++++  
Sbjct: 458 ISRNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 70/406 (17%), Positives = 134/406 (33%), Gaps = 57/406 (14%)

Query: 24  LMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPPSS 81
             F ++ +VP  L     + L L  N++  +    F  ++ L++L+LG     +     +
Sbjct: 11  YRFCNLTQVPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 82  LSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSK---SDVNEIPVSFGRLSHLRL 136
              L NLR L L       L   +  G L  L  L L     SD       F  L  L  
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 137 LDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTS 196
           LDL+      L       +L  L+ +  S               +    +    L  L  
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSS--------------NQIFLVCEHELEPLQG 173

Query: 197 LHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRI 256
             +           ++  +L S  +++     +N F  + LE  +   +           
Sbjct: 174 KTLSFF-------SLAANSLYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225

Query: 257 SALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLER 316
           +A+       L+ +  +         +   +   + F  L    +   +     + SL  
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGF--HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283

Query: 317 TQRVTLRKLEWLFIRENQNFVEICHGQLPAGC---LSNVKRLDVVGCGSMLKILPSHLVQ 373
               TL+ L+ L +  N+        ++       L N++ L++     +L  L S    
Sbjct: 284 RVFETLKDLKVLNLAYNKIN------KIADEAFYGLDNLQVLNLSYN--LLGELYSSNFY 335

Query: 374 SFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDL 419
               +  +            ++++ +IA  + + F  LEKL  +DL
Sbjct: 336 GLPKVAYI------------DLQKNHIAIIQDQTFKFLEKLQTLDL 369

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 56/384 (14%), Positives = 104/384 (27%), Gaps = 67/384 (17%)

Query: 16  FEDLTGISLMFNDI-HEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG 72
            E L  + L        +        P L+ L L  + +  +    FQG+  L  L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 73  IRMVS---PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV- 126
             +            L  L  L L       L      G+L+ L+ +D S + +  +   
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 127 SFGRLS--HLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK 184
               L    L    L        +       +     + +          + + T + + 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 185 FIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRC 244
            I       L   H       IM +     N+         ++T        + + +   
Sbjct: 227 AISKSQAFSLILAH------HIMGAGFGFHNIKDPD-----QNTFAGLARSSVRHLD--- 272

Query: 245 SRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGC 304
                LS    + +L+S                      +F  L +     L  L +   
Sbjct: 273 -----LSHG-FVFSLNS---------------------RVFETLKD-----LKVLNLAYN 300

Query: 305 NEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSML 364
                 +N +       L  L+ L +  N    E+         L  V  +D+      +
Sbjct: 301 K-----INKIADEAFYGLDNLQVLNLSYNL-LGELYSSNF--YGLPKVAYIDLQKN--HI 350

Query: 365 KILPSHLVQSFQNLQRLMVESCEL 388
            I+     +  + LQ L +    L
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 56/359 (15%), Positives = 109/359 (30%), Gaps = 65/359 (18%)

Query: 108 LSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           L+  E L LS + +  +   SF  L  L+LL+L   Y    I       L  L  L +  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 167 ---------SFCHWQFESEEDTRSN---AKFIELGALSRLTSLHI------DIPKGEIMP 208
                    +F       E            ++ G    L +L         I    + P
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 209 SDMSLPNLTSFS-----ITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWI 263
           S   L +L S       I +  E  L       L  F+        L+ +   S +    
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS--------LAANSLYSRVSVDW 194

Query: 264 KNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLR 323
              +     + L  ++   N ++     +F+                ++  +    +   
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSN--------------AISKSQAFSLILAH 240

Query: 324 KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMV 383
            +       + N  +           S+V+ LD+      +  L S + ++ ++L+ L  
Sbjct: 241 HIMGAGFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKVL-- 295

Query: 384 ESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDL--PRMTDIWKGDTQFVSLHNLKK 440
                      +    I K   E F  L+ L +++L    + ++    + F  L  +  
Sbjct: 296 ----------NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKVAY 342

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 28/194 (14%)

Query: 14  NTFEDLTG---ISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
           N+F+ L     + L  N I  +  G       L  L L  N L  IP+  F  +  LK L
Sbjct: 82  NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 69  DLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHL---PDLSLIGELSGLEILDLSKSDVNE 123
            L    I  + P  + + + +LR L L     L    + +  G LS L  L+L+  ++ E
Sbjct: 142 WLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLRE 199

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA 183
           IP +   L  L  LDL+   +L  I PG    L  L++L+M                S  
Sbjct: 200 IP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQ--------------SQI 243

Query: 184 KFIELGALSRLTSL 197
           + IE  A   L SL
Sbjct: 244 QVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 8/156 (5%)

Query: 16  FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--I 73
               + +  +  ++ EVPDG+     + L L +N + +I    F+ ++ L++L L    I
Sbjct: 42  SNQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGR 130
           R +    + + L+NL TL L       +P+ + +  LS L+ L L  + +  IP  +F R
Sbjct: 101 RTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNR 158

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           +  LR LDL +   L  I  G    L  L  L ++ 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 6   ELKDWPSI-----NTFEDLTG---ISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDP 57
           +L +   +       FE L+    ++L   ++ E+P+     KL  L L  NHL  I   
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG 225

Query: 58  FFQGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEI 113
            FQG+  L+ L +    I+++   ++   L +L  + L + N+L  L   L   L  LE 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLER 283

Query: 114 LDLS 117
           + L 
Sbjct: 284 IHLH 287

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 7/160 (4%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHL--LVIPDPFFQGMKDLKVLD 69
                 T + L  N +  +P G+  +  +L  L L  N L           G   LK LD
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 70  LGGIRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV- 126
           L    +++  S+   L  L  L   + N   + + S+   L  L  LD+S +        
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
            F  LS L +L +      E   P + + LR L  L +S 
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 19  LTGISLMFNDIHEVPDGLEC----PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG-- 72
           LT +SL  N +       +       L+ L L  N ++ +   F  G++ L+ LD     
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSN 112

Query: 73  IRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNE--IPVSF 128
           ++ +S  S    L NL  L + + +     +    G LS LE+L ++ +   E  +P  F
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIF 171

Query: 129 GRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             L +L  LDL+ C  LE + P   + L  L+ L MSH
Sbjct: 172 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 35/174 (20%), Positives = 55/174 (31%), Gaps = 32/174 (18%)

Query: 38  CPK-----LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRT 90
           CP         +      L  +P            L+L    ++ + P      L+ L  
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSL-PHGVFDKLTQLTK 56

Query: 91  LRLDYCNHLPDLSLIGE----LSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLE 146
           L L   N L       +     + L+ LDLS + V  +  +F  L  L  LD       +
Sbjct: 57  LSLSS-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 147 LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA-KFIELGALSRLTSLHI 199
           +    V   LR L  L +SH                  +    G  + L+SL +
Sbjct: 116 MSEFSVFLSLRNLIYLDISH---------------THTRVAFNGIFNGLSSLEV 154

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 7   LKDWPSINTFEDLTG---ISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQG 61
            +++   + F +L     + L    + ++          LQ L +  N+   +    ++ 
Sbjct: 163 QENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 62  MKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLD 94
           +  L+VLD     I          F S+L  L L 
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 86/470 (18%), Positives = 162/470 (34%), Gaps = 65/470 (13%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
           N       + L FN +  +        P+LQ L L +  +  I D  +Q +  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 72  GIRMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-- 126
           G  + S    + S LS+L+ L     N   L +  + G L  L+ L+++ + +    +  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPE 143

Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFI 186
            F  L++L  LDL+    ++ I    L  L ++  L +S                    I
Sbjct: 144 YFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF----------I 192

Query: 187 ELGALSRLTSLHIDIPKGEIMPSDMS-----LPNLTSFSITIGEEDTLNDFIELFLENFN 241
           + GA   +    + +       + M      L  L    + +GE     +  +       
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDL-ENIFSNLANDDFN----EL 296
             C+  +   ++ R++ L  ++ +++     L  +    L       + +  +N     L
Sbjct: 253 GLCNLTI---EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 297 MFLYIFGCNEMKCLLNSLER-----------TQRVTLRKLEWLFIRENQ-NFVEICHGQL 344
             +           L SL+R              V L  LE+L +  N  +F   C    
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 345 PAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELL----VSVFE------ 394
                +++K LD+   G  +  + S+     + L+ L  +   L      SVF       
Sbjct: 370 --FGTTSLKYLDLSFNG--VITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 395 ---IERVNIAKEETELFSSLEKLTLIDLP--RMTDIWKGDTQFVSLHNLK 439
              I   +       +F+ L  L ++ +      + +  D  F  L NL 
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLT 473

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDP--FFQGMKDLKVLDLG 71
              + L  ++   N        ++ P L+ L L +N L           G   LK LDL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPVS-F 128
              +++  S+   L  L  L   + N   + + S+   L  L  LD+S +         F
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 129 GRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             LS L +L +      E   P + + LR L  L +S 
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 9e-18
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 11/156 (7%)

Query: 19  LTGISLMFNDIHEVPDG-LECPKLQALFLQKNHLLVIPDP-FFQGMKDLKVLDLGG--IR 74
           L  + L FN +  +    L   +L+ L  Q ++L  + +   F  +++L  LD+     R
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 75  MVSPPSSLSFLSNLRTLRLDYCNHLPDL---SLIGELSGLEILDLSKSDVNEIPVS-FGR 130
           +       + LS+L  L++   N   +     +  EL  L  LDLS+  + ++  + F  
Sbjct: 435 VA-FNGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           LS L++L++     L+ +P G+  RL  L+++++  
Sbjct: 493 LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 73/458 (15%), Positives = 148/458 (32%), Gaps = 77/458 (16%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
           S  +F +L  + L   +I  + DG       L  L L  N +  +    F G+  L+ L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 70  LGGIRMVS-PPSSLSFLSNLRTLRLDYCNHLPDLSL---IGELSGLEILDLSKSDVNEIP 125
                + S     +  L  L+ L + + N +    L      L+ LE LDLS + +  I 
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 126 V-SFGRLSHLRLLDLT---DCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRS 181
                 L  + LL+L+       +  I PG    +R L +L + ++F             
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTC---- 220

Query: 182 NAKFIELGALSRLTSLHIDIPKGEIMP-----SDMSLPNLTSFSITIGEEDTLNDFIELF 236
                 +  L+ L    + + +             +L  L + +I       L+ +++  
Sbjct: 221 ------IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 237 LENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENI-FSNLANDDFNE 295
           ++ FN   + +      + I  +  +  N   +   L   +      +   +L    F  
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 296 LMFLYIFGCNEMKCL----------------------LNSLER------------TQRVT 321
                 F   ++  L                        SL+             +  + 
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 322 LRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRL 381
           L +LE L  + +    ++    +    L N+  LD+       ++  + +     +L+ L
Sbjct: 395 LEQLEHLDFQHSN-LKQMSEFSVFLS-LRNLIYLDISHT--HTRVAFNGIFNGLSSLEVL 450

Query: 382 MVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDL 419
            +       +              ++F+ L  LT +DL
Sbjct: 451 KMAGNSFQENFLP-----------DIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 70/410 (17%), Positives = 129/410 (31%), Gaps = 58/410 (14%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECP------KLQALFLQKNHLLVIPDPFF 59
             K     +   +L  + L  N I  +                +L L  N +  I    F
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 60  QGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDY-----CNHLPDLSLIGELSGLE 112
           + ++ L  L L      +    + +  L+ L   RL         +L        L GL 
Sbjct: 198 KEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLC 255

Query: 113 ILDLSKSDVN-------EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMS 165
            L + +  +        +I   F  L+++    L       +         + LE +   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 166 H-SFCHWQFES-EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITI 223
              F   + +S +  T ++ K     +   L SL            D+S   L+      
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF---------LDLSRNGLSFKGCCS 366

Query: 224 GEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISAL---HSWIKNLLLRSEILALIEVND 280
             +        L L +FN   + +       ++  L   HS +K +   S  L+L  +  
Sbjct: 367 QSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 281 L---ENIFSNLANDDFNELM---FLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQ 334
           L           N  FN L     L + G +       +        LR L +L + + Q
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNS----FQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 335 NFVEICHGQLPAGC---LSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRL 381
               +    L       LS+++ L++      LK +P  +     +LQ++
Sbjct: 482 ----LEQ--LSPTAFNSLSSLQVLNMASN--QLKSVPDGIFDRLTSLQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS 77
            + G S   N + ++   L    L  L L +  L  +    F  +  L+VL++   ++ S
Sbjct: 451 KMAGNSFQENFLPDIFTEL--RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 78  -PPSSLSFLSNLRTLRLDY------CNHLPDLS 103
            P      L++L+ + L        C  +  LS
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 5e-21
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 35/224 (15%)

Query: 14  NTFEDLTG---ISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
           +TF  L     + L  N I ++  G       L  L L  N L VIP   F+ +  L+ L
Sbjct: 93  DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 69  DLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHL---PDLSLIGELSGLEILDLSKSDVNE 123
            L    I  + P  + + + +L  L L     L    + +  G L  L+ L+L   ++ +
Sbjct: 153 WLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKD 210

Query: 124 IPVSFGRLSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN 182
           +P +   L  L  L+++   N    I PG    L  L++L++ +              S 
Sbjct: 211 MP-NLTPLVGLEELEMS--GNHFPEIRPGSFHGLSSLKKLWVMN--------------SQ 253

Query: 183 AKFIELGA---LSRLTSLHIDIPKGEIMPSDM--SLPNLTSFSI 221
              IE  A   L+ L  L++       +P D+   L  L    +
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.1 bits (229), Expect = 7e-20
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 16  FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--I 73
               + +      + EVP G+     + L L +N++ +I    F+ +  L+VL LG   I
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGR 130
           R +    + + L++L TL L       +P  +    LS L  L L  + +  IP  +F R
Sbjct: 112 RQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNR 169

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           +  L  LDL +   LE I  G    L  L+ L +  
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 6   ELKDWPSI-----NTFEDLTG---ISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDP 57
           +L +   +       FE L     ++L   +I ++P+      L+ L +  NH   I   
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG 236

Query: 58  FFQGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEI 113
            F G+  LK L +    + ++   ++   L++L  L L + N+L  L   L   L  L  
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVE 294

Query: 114 LDLS 117
           L L 
Sbjct: 295 LHLH 298

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 50/194 (25%), Positives = 68/194 (35%), Gaps = 29/194 (14%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
                   I L  N I  VP      C  L  L+L  N L  I    F G+  L+ LDL 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 72  G---IRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV 126
               +R V  P++   L  L TL LD C    L      G L+ L+ L L  + +  +P 
Sbjct: 89  DNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDNALQALPD 146

Query: 127 -SFGRLSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA- 183
            +F  L +L  L L    N +  +P      L  L+ L +                 N  
Sbjct: 147 DTFRDLGNLTHLFLH--GNRISSVPERAFRGLHSLDRLLLHQ---------------NRV 189

Query: 184 KFIELGALSRLTSL 197
             +   A   L  L
Sbjct: 190 AHVHPHAFRDLGRL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 28/152 (18%)

Query: 19  LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IR 74
           L  + L    + E+  GL      LQ L+LQ N L  +PD  F+ + +L  L L G  I 
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 75  MVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHL 134
            V P  +   L +L  L L   N +  +                      P +F  L  L
Sbjct: 167 SV-PERAFRGLHSLDRLLLHQ-NRVAHVH---------------------PHAFRDLGRL 203

Query: 135 RLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             L L    NL  +P   L+ LR L+ L ++ 
Sbjct: 204 MTLYLFAN-NLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 79  PSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLR 135
           P  +   +  + + L      H+P  S       L IL L  + +  I   +F  L+ L 
Sbjct: 27  PVGIP--AASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 136 LLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
            LDL+D   L  + P     L +L  L++  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.5 bits (233), Expect = 4e-20
 Identities = 75/438 (17%), Positives = 141/438 (32%), Gaps = 49/438 (11%)

Query: 16  FEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI 73
                 +   FN +  + +        L  L L +  +  I +  FQ    L  L L   
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 74  RMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-SFG 129
            ++    ++LS    L+ L         +  + L      LE L L  + ++ I +    
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGF 150

Query: 130 RLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG 189
               L++LD  +   +  +    +S L++   L ++ +                  IE G
Sbjct: 151 PTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDI------------AGIEPG 197

Query: 190 ALSRLTSLHIDIPKGEIMPSDM-SLPNLTSFSITIGE--EDTLNDFIELFLENFNKRCSR 246
           A        ++    + +      L N T  S+ +G   +    D      E   +    
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 247 AMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNE 306
           ++ L        + S   +     + L L     L  + S L     + L  L +     
Sbjct: 258 SINLQ-KHYFFNISSNTFHCFSGLQELDL-TATHLSELPSGLVG--LSTLKKLVLSANK- 312

Query: 307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKI 366
                 +L +        L  L I+ N   +E+  G L    L N++ LD+         
Sbjct: 313 ----FENLCQISASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSD 366

Query: 367 LPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLP--RMTD 424
             +  +++  +LQ L +                    +TE F    +L L+DL   R+  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYN------------EPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 425 IWKGDTQFVSLHNLKKVR 442
                + F +LH LK + 
Sbjct: 415 KDA-QSPFQNLHLLKVLN 431

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 12/165 (7%)

Query: 12  SINTFEDLTGISLMFNDIHEVP----DGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKV 67
             +T + L   +    D  ++     +GL    ++++ LQK++   I    F     L+ 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 68  LDLGGIRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLS--KSDVNE 123
           LDL    +   PS L  LS L+ L L      +L  +S       L  L +      +  
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLEL 341

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIP--PGVLSRLRKLEELYMSH 166
                  L +LR LDL+   ++E        L  L  L+ L +S+
Sbjct: 342 GTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSY 385

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 72/431 (16%), Positives = 136/431 (31%), Gaps = 60/431 (13%)

Query: 19  LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
           L  + L  N +  + +        L+ LF  +  +  I        K L+ L LG   + 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 77  S-PPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEI--LDLSKSDVNEIPVSFGRL 131
           S           L+ L     N +  LS   +  L       L+L+ +D+  I       
Sbjct: 143 SIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 132 SHLRLLDLTDCYNLELIPPG-VLSRLRKLEELYMSH------------SFCHWQFESEED 178
           +  + L+     NL +I  G   S ++ L                     C    ES   
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 179 TRSNAKFIELGALSRLTSLH-IDIPKGEI--MPSDMS-LPNLTSFSITIGEEDTLNDFIE 234
            +     I        + L  +D+    +  +PS +  L  L    ++    +   +  +
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS---ANKFENLCQ 318

Query: 235 LFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENI------FSNL 288
           +   NF       + +  + +   L +     L     L L   +D+E          NL
Sbjct: 319 ISASNFPSL--THLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNL 375

Query: 289 ANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGC 348
           ++     L  L +           SL+        +LE L +   +  +++   Q P   
Sbjct: 376 SH-----LQSLNLSYNE-----PLSLKTEAFKECPQLELLDLAFTR--LKVKDAQSPFQN 423

Query: 349 LSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELF 408
           L  +K L++     +L I    L      LQ L ++                  ++T   
Sbjct: 424 LHLLKVLNLSHS--LLDISSEQLFDGLPALQHLNLQGNHF---------PKGNIQKTNSL 472

Query: 409 SSLEKLTLIDL 419
            +L +L ++ L
Sbjct: 473 QTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 13/158 (8%)

Query: 19  LTGISLMFNDIHEVPDG---LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR- 74
           L  + L F  +              L+ L L  + L +  +  F G+  L+ L+L G   
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 75  ---MVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPVSFG 129
               +   +SL  L  L  L L +C+   +   +    L  +  +DLS + +    +   
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMNHVDLSHNRLTSSSIEA- 519

Query: 130 RLSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMSH 166
            LSHL+ + L    N + +I P +L  L +   + +  
Sbjct: 520 -LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 66/439 (15%), Positives = 137/439 (31%), Gaps = 88/439 (20%)

Query: 14  NTFEDLTGISLMF-----NDIHEVPDGL-ECPKLQALFLQKNHLLVIPDP--FFQGMKDL 65
                L   + +      NDI  +  G  +    Q+L       L++         ++ L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 66  KVLDLGGIRMVS-PPSSLSFLSNLRTLRLD-YCNHLPDLS--LIGELSGLEILDLSKSDV 121
            +     +      P+    L  +    ++   ++  ++S       SGL+ LDL+ + +
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 122 NEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRS 181
           +E+P     LS L+ L L+     E +     S    L  L +  +             +
Sbjct: 291 SELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGN-------------T 336

Query: 182 NAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFN 241
               +  G L  L +L       E+   D+S  ++ +      +   L+    L L   N
Sbjct: 337 KRLELGTGCLENLENLR------EL---DLSHDDIETSDCCNLQLRNLSHLQSLNLSY-N 386

Query: 242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILAL----IEVNDLENIFSNLAN----D-D 292
           +               +L +       + E+L L    ++V D ++ F NL      +  
Sbjct: 387 E-------------PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 293 FNELMFLYIFGCNEMKCLL------NSLERTQRVT------LRKLEWLFIRENQNFVEIC 340
            + L        + +  L       N   +           L +LE L +        I 
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID 492

Query: 341 HGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNI 400
                   L  +  +D+    + L        ++  +L+ + +           +   +I
Sbjct: 493 QHAF--TSLKMMNHVDL--SHNRLTSSSI---EALSHLKGIYL----------NLASNHI 535

Query: 401 AKEETELFSSLEKLTLIDL 419
           +     L   L +   I+L
Sbjct: 536 SIILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRM 75
           +L G      +I +        +L+ L L    L  I    F  +K +  +DL    +  
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 76  VSPPSSLSFLSNLRTLRLD-YCNHL--PDLSLIGELSGLEILDLS 117
            S       LS+L+ + L+   NH+     SL+  LS    ++L 
Sbjct: 515 SSI----EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 5e-20
 Identities = 83/583 (14%), Positives = 186/583 (31%), Gaps = 104/583 (17%)

Query: 14  NTFEDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
           +   ++T ++L  N +  +P        +L +L +  N +  +     Q +  LKVL+L 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 72  GIRMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-S 127
              +      + +F +NL  L L   +   + + +   +   L  LDLS + ++   + +
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 128 FGRLSHLRLLDLTDCY-------------------------NLELIPPGVLSRLRKLEEL 162
             +L +L+ L L++                            ++   PG    + +L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHI------DIPKGEIMPSDMSLPNL 216
           ++++          E            A + + +L +                 +   NL
Sbjct: 201 FLNN--VQLGPSLTEK------LCLELANTSIRNLSLSNSQLSTTSNTTF--LGLKWTNL 250

Query: 217 TSF-----SITIGEEDTLNDF---IELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLL 268
           T       ++ +   D+          FLE  N +   +  L     +  L+      L 
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN------LK 304

Query: 269 RSEILALIEVNDLENI----FSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRK 324
           RS     I +  L  I    F  L       L  L +   +     +  ++      L  
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKC-----LEHLNMEDND-----IPGIKSNMFTGLIN 354

Query: 325 LEWLFIRENQ-NFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMV 383
           L++L +  +  +   + +    +   S +  L++      +  + S       +L+ L +
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN--KISKIESDAFSWLGHLEVLDL 412

Query: 384 ESCELL----VSVFE---------IERVNIAKEETELFSSLEKLTLIDLP--RMTDIWKG 428
              E+        +          +      +     F+ +  L  + L    + ++   
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 429 DTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPT 488
            + F  L NL  + +   + +  +    L      E + L  N   ++  HA        
Sbjct: 473 PSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 489 PS-LGNLVSITIRGCGKLRNLFTT---SMVKSLVRLESLEVSS 527
              L +L  + +       N F      + K L  L+ +++  
Sbjct: 532 LKGLSHLHILNLES-----NGFDEIPVEVFKDLFELKIIDLGL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 86/438 (19%), Positives = 157/438 (35%), Gaps = 83/438 (18%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKD--LKVLDLGGIRM 75
            L  + L  +   ++   L    ++ L L  + L    +  F G+K   L +LDL    +
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 76  VS-PPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNE--------- 123
                 S ++L  L    L+Y N++  L    +  L  +  L+L +S   +         
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 124 -IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN 182
               SF  L  L  L++ D  ++  I   + + L  L+ L +S+SF   +      T +N
Sbjct: 320 IDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLR------TLTN 372

Query: 183 AKFIELGALSRLTSLHI------DIPKGEIMPSDMSLPNLT---------SFSITIGEED 227
             F+ L   S L  L++       I           L +L             +T  E  
Sbjct: 373 ETFVSLA-HSPLHILNLTKNKISKIESDAFS----WLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 228 TLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSN 287
            L +  E++L   NK              + + S ++ L+LR   +AL  V+   + F  
Sbjct: 428 GLENIFEIYLSY-NK-----YLQLTRNSFALVPS-LQRLMLRR--VALKNVDSSPSPFQP 478

Query: 288 LANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAG 347
           L N     L  L +   N     + ++       L KLE L ++ N N   +     P G
Sbjct: 479 LRN-----LTILDLSNNN-----IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGG 527

Query: 348 C------LSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIA 401
                  LS++  L++   G     +P  + +    L+ + +               N+ 
Sbjct: 528 PIYFLKGLSHLHILNLESNG--FDEIPVEVFKDLFELKIIDLGLN------------NLN 573

Query: 402 KEETELFSSLEKLTLIDL 419
                +F++   L  ++L
Sbjct: 574 TLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 74/406 (18%), Positives = 143/406 (35%), Gaps = 78/406 (19%)

Query: 41  LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLRLDYCNHL 99
            +        L  +PD       ++ VL+L   ++   P ++ +  S L +L + + N +
Sbjct: 6   HEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF-NTI 61

Query: 100 PDL--SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRL 156
             L   L  +L  L++L+L  ++++++   +F   ++L  L L    +++ I      + 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQ 120

Query: 157 RKLEELYMSHSFCHWQFESEEDTRSNA-KFIELGALSRLTSLHI---------DIPKGEI 206
           + L  L +SH               N     +LG   +L +L            +   E+
Sbjct: 121 KNLITLDLSH---------------NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 207 MPSDMSLPNLTSF-----SITIGEEDTLNDF---IELFLENFNKRCSRAMGLSQDMRISA 258
                +  +L         I        +       LFL N     S    L  ++  ++
Sbjct: 166 --DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 259 LHSWIKNLLLRSEILALIEVNDLENIFSN-LANDDFNELMFLYIFGCNEMKCLLNSLERT 317
           +    +NL L +        + L    +       +  L  L +   N     LN +   
Sbjct: 224 I----RNLSLSN--------SQLSTTSNTTFLGLKWTNLTMLDLSYNN-----LNVVGND 266

Query: 318 QRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKI----LPSHLVQ 373
               L +LE+ F+  N N   +    L    L NV+ L++    +   I    LP     
Sbjct: 267 SFAWLPQLEYFFLEYN-NIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 374 SFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDL 419
           SFQ L+ L             +E  +I   ++ +F+ L  L  + L
Sbjct: 324 SFQWLKCL---------EHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 55/219 (25%), Positives = 80/219 (36%), Gaps = 29/219 (13%)

Query: 16  FEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI 73
             +   + L  N I  +        P L+ L L +N +  +    F  + +L+ L L   
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 74  RMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-SFG 129
           R+   P    + LSNL  L +       L D      L  L+ L++  +D+  I   +F 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVGDNDLVYISHRAFS 149

Query: 130 RLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA-KFIEL 188
            L+ L  L L  C NL  IP   LS L  L  L + H                    I  
Sbjct: 150 GLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRH---------------LNINAIRD 193

Query: 189 GALSRLTSLHI----DIPKGEIMPSDM-SLPNLTSFSIT 222
            +  RL  L +      P  + M  +     NLTS SIT
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 11/162 (6%)

Query: 14  NTFEDLTG---ISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
             F +L     + L  N +  +P G+      L  L + +N ++++ D  FQ + +LK L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 69  DLGGIRMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIP 125
           ++G   +V     + S L++L  L L+ CN   +P  +L   L GL +L L   ++N I 
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH-LHGLIVLRLRHLNINAIR 192

Query: 126 -VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             SF RL  L++L+++    L+ + P  L  L  L  L ++H
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITH 233

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 7e-19
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 14  NTFEDLTG---ISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
             F  L     ++L   ++  +P         L  L L+  ++  I D  F+ +  LKVL
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 69  DLGGIRMVSPPSSLSF-LSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIP 125
           ++     +   +       NL +L + +CN   +P L++   L  L  L+LS + ++ I 
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNPISTIE 264

Query: 126 -VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK 184
                 L  L+ + L     L ++ P     L  L  L +S               +   
Sbjct: 265 GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSG--------------NQLT 309

Query: 185 FIELGALSRLTSLH 198
            +E      + +L 
Sbjct: 310 TLEESVFHSVGNLE 323

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 19  LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
           L  ++L +N I  +   +  E  +LQ + L    L V+    F+G+  L+VL++ G ++ 
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 77  S-PPSSLSFLSNLRTLRLD 94
           +   S    + NL TL LD
Sbjct: 310 TLEESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 14  NTFED---LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
           +   +   L  I L+   +  V          L+ L +  N L  + +  F  + +L+ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 69  DLGG 72
            L  
Sbjct: 326 ILDS 329

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 89/451 (19%), Positives = 147/451 (32%), Gaps = 57/451 (12%)

Query: 16  FEDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI 73
                 I L FN +  +         +LQ L L +  +  I D  + G+  L  L L G 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 74  RMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSK---SDVNEIPVS 127
            + S  P S S L++L  L         L     IG+L  L+ L+++         +P  
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK-LPAY 148

Query: 128 FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDT-------- 179
           F  L++L  +DL+    ++ I    L  LR+  ++ +S        +  +D         
Sbjct: 149 FSNLTNLVHVDLSY-NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 180 ----RSNAK--FIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFI 233
               R N     I    L  L  LH+      I+       NL  F  +I E        
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHV---HRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 234 ELFLENFNKRCSRAM---GLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLAN 290
           E  L   N      +    L+    +S     IK L    +      ++ +         
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 291 DDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLS 350
            D   L  L +   N+       +       L  L +L +  N                +
Sbjct: 325 LDLPFLKSLTL-TMNKGSISFKKVA------LPSLSYLDLSRNA-LSFSGCCSYSDLGTN 376

Query: 351 NVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSS 410
           +++ LD+   G    I+ ++     + LQ L  +   L               E   F S
Sbjct: 377 SLRHLDLSFNG--AIIMSANF-MGLEELQHLDFQHSTLKRV-----------TEFSAFLS 422

Query: 411 LEKLTLIDLP--RMTDIWKGDTQFVSLHNLK 439
           LEKL  +D+        + G   F+ L +L 
Sbjct: 423 LEKLLYLDISYTNTKIDFDGI--FLGLTSLN 451

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 5e-19
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 5/160 (3%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ--GMKDLKVLD 69
                  L  ++L  N        +  P L  L L +N L       +   G   L+ LD
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 70  LGGIRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV- 126
           L     +   ++   L  L+ L   +     + + S    L  L  LD+S ++       
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
            F  L+ L  L +      +     V +    L  L +S 
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 19  LTGISLMFNDIHEVPDG---LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--I 73
           L  +    + +  V +    L   KL  L +   +  +  D  F G+  L  L + G   
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS-FGR 130
           +  +  +  +  +NL  L L     L  +S  +   L  L++L++S +++  +  S + +
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           L  L  LD +    +E     +    + L    +++
Sbjct: 520 LYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 7/158 (4%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
             +   +++ +SL    I  + D  +  K Q+L + +  L   P      +  LK L L 
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLT 336

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNH--LPDLSLIG-ELSGLEILDLSKSDVNEIPVSF 128
             +          L +L  L L           S      + L  LDLS +    +  +F
Sbjct: 337 MNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395

Query: 129 GRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             L  L+ LD        +        L KL  L +S+
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 58/380 (15%), Positives = 107/380 (28%), Gaps = 76/380 (20%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
            +  F+D   + +    I    +GL    +    L   +        F  + ++  + L 
Sbjct: 237 ILGEFKDERNLEIFEPSI---MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRL 131
           G+ +      +      ++L +     L     +  L  L+ L L+ +  +        L
Sbjct: 294 GVSIKYLED-VPKHFKWQSLSIIR-CQLKQFPTLD-LPFLKSLTLTMNKGSISF-KKVAL 349

Query: 132 SHLRLLDLTDCYNLELIPPGVLSRL--RKLEELYMSHSFCHWQFESEEDTRSNAKFIELG 189
             L  LDL+    L        S L    L  L +S +                      
Sbjct: 350 PSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN----GAIIMSAN--------FM 396

Query: 190 ALSRLTSLHI------DIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKR 243
            L  L  L         + +       +SL  L    I+        +    F   F   
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAF---LSLEKLLYLDISY------TNTKIDFDGIFL-- 445

Query: 244 CSRAMGLSQDMRISALHSWIKNLLLRS-EILALIEVNDLENIFSNLANDDFNELMFLYIF 302
                GL+           +  L +             L N+F+N  N     L FL + 
Sbjct: 446 -----GLTS----------LNTLKMAGNSFKDNT----LSNVFANTTN-----LTFLDLS 481

Query: 303 GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGS 362
            C      L  +      TL +L+ L +  N     +    L +   + +  L  + C  
Sbjct: 482 KCQ-----LEQISWGVFDTLHRLQLLNMSHNN----LLF--LDSSHYNQLYSLSTLDCSF 530

Query: 363 -MLKILPSHLVQSFQNLQRL 381
             ++     L    ++L   
Sbjct: 531 NRIETSKGILQHFPKSLAFF 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 88/446 (19%), Positives = 149/446 (33%), Gaps = 56/446 (12%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDL 70
           P +    ++T    M  + +++PD L     + L L  N L  +    F    +L+VLDL
Sbjct: 2   PCVEVVPNIT-YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 71  GGIRMVS-PPSSLSFLSNLRTLRLDYCNHL--PDLSLIGELSGLEILDLSKSD-VNEIPV 126
               + +    +   LS+L TL L   N +    L     LS L+ L   +++  +    
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH------------SFCHWQFE 174
             G L  L+ L++          P   S L  LE L +S                     
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 175 SEE-DTRSNA-KFIELGALS--RLTSLHID--IPKGEIMPSDM-SLPNLTSFSITIGEED 227
           +   D   N   FI+ GA    RL  L +        +M + +  L  L    + +GE  
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 228 TLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLL-----LRSEILA---LIEVN 279
              +  +         C+  +   +   +      I +L      + S  L    +  V 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 280 DLENIFS----NLANDDFNELMFLYIFGCNEMKCLLNSLERTQR-VTLRKLEWLFIRENQ 334
           D    F      L N  F +   L +     +    N        V L  LE+L +  N 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 335 -NFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVF 393
            +F   C         +++K LD+   G  +  + S+     + L+ L  +   L     
Sbjct: 359 LSFKGCCSQSD--FGTTSLKYLDLSFNG--VITMSSNF-LGLEQLEHLDFQHSNLKQMS- 412

Query: 394 EIERVNIAKEETELFSSLEKLTLIDL 419
                     E  +F SL  L  +D+
Sbjct: 413 ----------EFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL--LVIPDPFFQGMKDLKVLDLG 71
              + L  ++   N        ++ P L+ L L +N L           G   LK LDL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEI-PVSF 128
              +++  S+   L  L  L   + N   + + S+   L  L  LD+S +         F
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 129 GRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             LS L +L +      E   P + + LR L  L +S 
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 8e-15
 Identities = 38/159 (23%), Positives = 53/159 (33%), Gaps = 9/159 (5%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
             N   +++  SL+   I  V D       Q L L        P    + +K L      
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLI----GELSGLEILDLSKSDVNEIPVS 127
           G        S   L +L  L L   N L             + L+ LDLS + V  +  +
Sbjct: 337 GGN----AFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 128 FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           F  L  L  LD       ++    V   LR L  L +SH
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 70/432 (16%), Positives = 131/432 (30%), Gaps = 88/432 (20%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQA----LFLQKNHLLVIPDPFFQ 60
            K     +   +L  + L  N I  +         ++      L L  N +  I    F+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 61  GMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHL-------PDLSLIGELSGL 111
            ++ L  L L      +    + +  L+ L   RL              D S +  L  L
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 112 EILDLSKSDV----NEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
            I +   + +    ++I   F  L+++    L       +      S     + L + + 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNC 314

Query: 168 FCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEED 227
               +F                 L  L  L     KG    S++ LP+L    ++     
Sbjct: 315 ----KFGQ----------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS----R 356

Query: 228 TLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSN 287
               F     ++         G +           +K L L          N +  + SN
Sbjct: 357 NGLSFKGCCSQSDF-------GTTS----------LKYLDLSF--------NGVITMSSN 391

Query: 288 LANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAG 347
                  +L  L     N    L    E +  ++LR L +L I    +     +G     
Sbjct: 392 FLG--LEQLEHLDFQHSN----LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF--N 442

Query: 348 CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETEL 407
            LS+++ L + G  S  +     +    +NL  L +  C             + +     
Sbjct: 443 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC------------QLEQLSPTA 489

Query: 408 FSSLEKLTLIDL 419
           F+SL  L ++++
Sbjct: 490 FNSLSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 19  LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRM 75
           L  + +         +G+      L+ L +  N          F  +++L  LDL   ++
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 76  VS-PPSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSK-SDVNEIPVSFGRL 131
               P++ + LS+L+ L + + N+   L       L+ L++LD S    +          
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 132 -SHLRLLDLTD 141
            S L  L+LT 
Sbjct: 542 PSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS 77
            + G S   N + ++   L    L  L L +  L  +    F  +  L+VL++      S
Sbjct: 451 KMAGNSFQENFLPDIFTEL--RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 78  -PPSSLSFLSNLRTLRLDYCNHL---PDLSLIGELSGLEILDLS 117
                   L++L+ L     NH+       L    S L  L+L+
Sbjct: 509 LDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLT 551

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 19/201 (9%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLE---CPKLQALFLQKNHLLVIPDPFFQGMKDLKV 67
              +T   +    + +N++ E P         KL  L    N +  +    F     L  
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTD 599

Query: 68  LDLGGIRMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLS----KSD 120
           L L   ++   P    +F   +  L   +    ++P++     +  +  +D S     S+
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 121 VNEIPVSFGRLSHLRL--LDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEED 178
              I  S      +    + L+    ++  P  + +    +  + +S++       S  +
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN----LMTSIPE 714

Query: 179 TRSNAKFIELGALSRLTSLHI 199
                K         LT++ +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 17/177 (9%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           E     S+     L  +  + N +  +       KL  L L  N +  IP+ F      +
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCN------HLPDLSLIGELSGLEILDLS 117
           + L      ++ +    +   +  + ++   Y        ++       +      + LS
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 118 KSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIP-------PGVLSRLRKLEELYMSH 166
            +++ + P   F   S +  + L++   +  IP        G       L  + +  
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 22/183 (12%), Positives = 50/183 (27%), Gaps = 22/183 (12%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDG-------LECPKLQALFLQKNHLLVIPDPF 58
            + +  +  +   +  +   +N I              +      + L  N +   P   
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 59  FQGMKDLKVLDLGG--------IRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGEL 108
           F     +  + L            +     +      L T+ L +     L D      L
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 109 SGLEILDLSKSDVNEIPVSFGRLSHLRLLDL-----TDCYNLELIPPGVLSRLRKLEELY 163
             L  +D+S +  +  P      S L+   +      +   +    P  ++    L +L 
Sbjct: 753 PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 164 MSH 166
           +  
Sbjct: 813 IGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 52/429 (12%), Positives = 124/429 (28%), Gaps = 60/429 (13%)

Query: 37  ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC 96
              ++  L L               + +LKVL  G                   +  +  
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 97  NHLPDLS---LIGELSGLEILDLSKSDVNEIP----VSFGRLSHLRLLDLTDCYN-LELI 148
           + +        +     L + DL +  +N  P    +       L+   + +  N +  I
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 149 PPGVLSRLRKLEELYMSH----SFCHWQFESEEDTRSNAKF----IELGALSRLTSLHI- 199
               + RL KL+ +Y ++             + ++    ++    +    L  LT + + 
Sbjct: 441 SKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 200 DIPKGEIMPSDMS-LPNLTSFSIT----IGEEDTLNDFIELFLENFNKRCSRAMGLSQDM 254
           + P    +P  +  LP L S +I     I       D+  L  +       +   +    
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG-YN 558

Query: 255 RISALHSWIKNLLLRS-EILALIEVNDLENI--FSNLAN-------------------DD 292
            +    +      +    +L     N + ++  F                          
Sbjct: 559 NLEEFPASASLQKMVKLGLLDC-VHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAF 617

Query: 293 FNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQ--NFVEICHGQLPAGCLS 350
            +++  L     N++K + N         +  +  +    N+  +        +      
Sbjct: 618 TDQVEGLGFSH-NKLKYIPNIFNAKS---VYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 351 NVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSS 410
           N   + +      ++  P+ L  +   +  +++ +  +      I   N  K +   + +
Sbjct: 674 NASTVTLSYN--EIQKFPTELFATGSPISTIILSNNLMT----SIPE-NSLKPKDGNYKN 726

Query: 411 LEKLTLIDL 419
              LT IDL
Sbjct: 727 TYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 19/163 (11%)

Query: 19  LTGISLMFNDIHEVPDGL---------ECPKLQALFLQKNHLLVIPDPF-FQGMKDLKVL 68
           ++ I L  N +  +P+               L  + L+ N L  + D F    +  L  +
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

Query: 69  DLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL-------IGELSGLEILDLSKSDV 121
           D+      S P+     S L+   + +        +       I     L  L +  +D+
Sbjct: 759 DVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 122 NEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164
            ++         L +LD+ D  N+ +    V   +     + +
Sbjct: 819 RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 59/397 (14%), Positives = 134/397 (33%), Gaps = 60/397 (15%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDL 70
                F D+  I +   D++   + +     + +  + + +  +P       + +++L+L
Sbjct: 18  QYDCVFYDVH-IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 71  GG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV 126
               I  +    + ++   ++ L + + N +  L   +   +  L +L L ++D++ +P 
Sbjct: 77  NDLQIEEI-DTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 127 S-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA-K 184
             F     L  L +++  NLE I          L+ L +S                N   
Sbjct: 135 GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS---------------NRLT 178

Query: 185 FIELGALSRLTSLHIDIPKGEIMPSDMSLP--NLTSFSITIGEEDTLNDFIELFL-ENFN 241
            ++L  +  L   ++       +   +++   + +  SI +       +   L L  N  
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 238

Query: 242 KRCSRAMGLSQ----DM---RISALHSWIKNLLLRSEILALIEVNDLENI---FSNLAND 291
              +  +        D+    +  +       + R E L +   N L  +      +   
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPT- 296

Query: 292 DFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSN 351
               L  L +   +     L  +ER Q     +LE L++  N   V +            
Sbjct: 297 ----LKVLDLSHNH-----LLHVERNQP-QFDRLENLYLDHNS-IVTL-----KLSTHHT 340

Query: 352 VKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCEL 388
           +K L +    S      + L   F+N+ R  V+  + 
Sbjct: 341 LKNLTL----SHNDWDCNSLRALFRNVARPAVDDADQ 373

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
           N       + L FN +  +        P+LQ L L +  +  I D  +Q +  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 72  GIRMVS-PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPVS- 127
           G  + S    + S LS+L+ L     N   L +   IG L  L+ L+++ + +    +  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 128 -FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES----------- 175
            F  L++L  LDL+    ++ I    L  L ++  L +S                     
Sbjct: 144 YFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 176 -EEDTRSNA-KFIELGALSRLTSL 197
            E    +N  K +  G   RLTSL
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSL 226

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 38/218 (17%), Positives = 82/218 (37%), Gaps = 24/218 (11%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            + D  +    E +T + +    +  +        L+ L L  N +  I       +  L
Sbjct: 33  SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKL 90

Query: 66  KVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP 125
             L +G  + ++  S+L  L+NLR L L   +++ D+S +  L+ +  L+L  +      
Sbjct: 91  TNLYIGTNK-ITDISALQNLTNLRELYL-NEDNISDISPLANLTKMYSLNLGANHNLSDL 148

Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN--A 183
                ++ L  L +T+   ++ + P  ++ L  L  L +++               N   
Sbjct: 149 SPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNY---------------NQIE 190

Query: 184 KFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSI 221
               L +L+ L      + +   +    ++  L S  I
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 39/199 (19%), Positives = 76/199 (38%), Gaps = 28/199 (14%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            +          +     L    + +V    E   +  L +    +  I     + + +L
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNL 68

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
           + L+L G  I  +SP   LS L  L  L +   N + D+S +  L+ L  L L++ ++++
Sbjct: 69  EYLNLNGNQITDISP---LSNLVKLTNLYIGT-NKITDISALQNLTNLRELYLNEDNISD 124

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN- 182
           I      L+ +  L+L   +NL  + P  LS +  L  L ++                + 
Sbjct: 125 IS-PLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTE---------------SK 166

Query: 183 -AKFIELGALSRLTSLHID 200
                 +  L+ L SL ++
Sbjct: 167 VKDVTPIANLTDLYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 66/339 (19%), Positives = 120/339 (35%), Gaps = 59/339 (17%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           ++     I    +L  ++L  N I ++       KL  L++  N +  I     Q + +L
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNL 112

Query: 66  KVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP 125
           + L L    +      L+ L+ + +L L   ++L DLS +  ++GL  L +++S V ++ 
Sbjct: 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKF 185
                L+ L  L L     +E I P  L+ L  L       +                  
Sbjct: 172 -PIANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVN-------------QITDI 214

Query: 186 IELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSI------TIGEEDTLNDFIELFLEN 239
             +  ++RL SL I   K   +    +L  LT   I       I     L     L + +
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS 274

Query: 240 FNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILAL----IEVNDLENIFSNLANDDFNE 295
            N+       +S    IS L++ +  L      L L    +   D+E     L N     
Sbjct: 275 -NQ-------ISD---ISVLNN-LSQL----NSLFLNNNQLGNEDMEV-IGGLTN----- 312

Query: 296 LMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQ 334
           L  L++   +     +  +      +L K++        
Sbjct: 313 LTTLFLSQNH-----ITDIRPLA--SLSKMDSADFANQV 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 4e-17
 Identities = 28/195 (14%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDL 70
                F D+  I +   D++   + +     + +  + + +  +P       + +++L+L
Sbjct: 24  QYDCVFYDVH-IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 71  GGIRMVS-PPSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPVS 127
             +++      + ++   ++ L + + N +  L   +   +  L +L L ++D++ +P  
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 128 -FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA-KF 185
            F     L  L +++  NLE I          L+ L +S                N    
Sbjct: 142 IFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS---------------NRLTH 185

Query: 186 IELGALSRLTSLHID 200
           ++L  +  L   ++ 
Sbjct: 186 VDLSLIPSLFHANVS 200

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 6e-13
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI 73
               +LT + L  N++ +    L  P L  + L  N L  I    F  M+ L+ L +   
Sbjct: 229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPVSFGRLS 132
           R+V+       +  L+ L L + NHL  +     +   LE L L  + +  +        
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHH 345

Query: 133 HLRLLDLTD 141
            L+ L L+ 
Sbjct: 346 TLKNLTLSH 354

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 59/353 (16%), Positives = 95/353 (26%), Gaps = 102/353 (28%)

Query: 40  KLQALFLQKNHLLVIPDPFFQG-MKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCN- 97
             Q        L    D            L+L  + +   P     LS+L+ + +D    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 98  -HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP------- 149
             LPD   + + +GLE L L+++ +  +P S   L+ LR L +  C  L  +P       
Sbjct: 117 MELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 150 -PGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIEL----GALSRLTSLHIDIPKG 204
             G    L  L+ L +  +                    L      L  L SL       
Sbjct: 175 ASGEHQGLVNLQSLRLEWT----------------GIRSLPASIANLQNLKSL------- 211

Query: 205 EIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIK 264
                 +    L++    I     L    EL L                  +        
Sbjct: 212 -----KIRNSPLSALGPAIHH---LPKLEELDLRGCTA-------------LRNYPPIFG 250

Query: 265 NLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRK 324
                                          L  L +  C+ +  L   + R     L +
Sbjct: 251 GR---------------------------APLKRLILKDCSNLLTLPLDIHR-----LTQ 278

Query: 325 LEWLFIRENQNFVEICHGQLPA--GCLSNVKRLDVVGCGSMLKILPSHLVQSF 375
           LE L +R   N       +LP+    L     + V     +   L  H   + 
Sbjct: 279 LEKLDLRGCVNL-----SRLPSLIAQLPANCIILV--PPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 19  LTGISLMFNDIHEVPDGLEC---PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM 75
               +     +    D LE    P   AL L+   L   PD  F+ +  L+ + +    +
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGL 116

Query: 76  VSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSK-SDVNEIPVSFGR-- 130
           +  P ++   + L TL L       LP    I  L+ L  L +    ++ E+P       
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPA--SIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 131 -------LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
                  L +L+ L L     +  +P   ++ L+ L+ L + +
Sbjct: 175 ASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRN 215

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
                      +L  + L +  I  +P  +     L++L ++ + L  +       +  L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH-LPKL 231

Query: 66  KVLDLGGI-RMVSPPSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSK-SDVN 122
           + LDL G   + + P      + L+ L L  C++L  L   I  L+ LE LDL    +++
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 123 EIPVSFGRLSHLRLLDLTDCYNLELIP 149
            +P    +L    ++ +      +L  
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 54/350 (15%), Positives = 100/350 (28%), Gaps = 70/350 (20%)

Query: 62  MKDLKVLDLGGI-RMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSD 120
               + L   G   +      LS          +  +           +  +I   +   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ---ANSNNPQIETRTGRA 67

Query: 121 VNEIPVSFGRLSHLRL--LDLTDCYNLELIPPGVLSRLRKLEELYMSH--------SFCH 170
           +          +      L+L     L   P     RL  L+ + +          +   
Sbjct: 68  LKATADLLEDATQPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQ 125

Query: 171 WQFESEEDTRSNAKFIEL----GALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEE 226
           +          N     L     +L+RL  L I            + P LT     +   
Sbjct: 126 FAGLETLTLARN-PLRALPASIASLNRLRELSI-----------RACPELTELPEPLAST 173

Query: 227 DTLNDFIELF-LENFNKRCSRAMGLSQDMRISALHSWIKNL--LLRSEILALIEVNDLEN 283
           D   +   L  L++     +          I +L + I NL  L   + L +   + L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWT---------GIRSLPASIANLQNL---KSLKIRN-SPLSA 220

Query: 284 I---FSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEIC 340
           +     +L       L  L + GC  ++                L+ L +++  N +   
Sbjct: 221 LGPAIHHLPK-----LEELDLRGCTALRNYPPIFGG-----RAPLKRLILKDCSNLLT-- 268

Query: 341 HGQLPA--GCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCEL 388
              LP     L+ +++LD+ GC   L  LPS + Q       ++V     
Sbjct: 269 ---LPLDIHRLTQLEKLDLRGC-VNLSRLPSLIAQ-LPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 57/347 (16%), Positives = 98/347 (28%), Gaps = 68/347 (19%)

Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFI 186
                S    L       L       LS+ ++      +     W+  +     SN   I
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDV-LSQWQRHYNADRNRWHSAWRQAN-----SNNPQI 60

Query: 187 ELGALSRLTSLHIDIPKGEIMPS---DMSLPNLTSFSITIGEEDTLNDFIELFLENFNKR 243
           E      L +    +           ++    L  F         L+    + ++     
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDA-AG- 115

Query: 244 CSRAMGLSQDMRISALHSWIKNL--LLRSEILALIEVNDLENI---FSNLANDDFNELMF 298
                       +  L   ++    L   E L L   N L  +    ++L       L  
Sbjct: 116 ------------LMELPDTMQQFAGL---ETLTLAR-NPLRALPASIASLNR-----LRE 154

Query: 299 LYIFGCNEMKCLLNSLERTQRVT----LRKLEWLFIRENQNFVEICHGQLPA--GCLSNV 352
           L I  C E+  L   L  T        L  L+ L +        I    LPA    L N+
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG----IR--SLPASIANLQNL 208

Query: 353 KRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLE 412
           K L +      L  L   +      L+ L +  C  L +                 + L+
Sbjct: 209 KSLKIRNSP--LSALGPAIHH-LPKLEELDLRGCTALRNY---------PPIFGGRAPLK 256

Query: 413 KLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGK 459
           +L L D   +  +         L  L+K+ +  C  L +  P+ + +
Sbjct: 257 RLILKDCSNLLTL---PLDIHRLTQLEKLDLRGCVNLSR-LPSLIAQ 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 19  LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
                +  + + +    L      ++ L L  N L  I          L++L+L    + 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 77  SPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
                L  LS LRTL L+       +  +     +E L  + ++++ +     R    + 
Sbjct: 72  ETL-DLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVS--CSRGQGKKN 124

Query: 137 LDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           + L +   + ++         +++ L +  
Sbjct: 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 9e-15
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDP-FFQGMKDLKVL 68
           S +  +    I L  N I  + D       ++Q L L+ N +  +           L+ L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 69  DLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIP 125
           +L    I  V         + L+TL L   N L  +       +G+  + L  + +  I 
Sbjct: 175 NLQYNFIYDVKG---QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163
            +     +L   DL              S+ ++++ + 
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 19  LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP 78
           L  ++L +N I++V   +   KL+ L L  N L  +  P FQ    +  + L   ++V  
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLI 229

Query: 79  PSSLSFLSNLRTLRLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLL 137
             +L F  NL    L   N     +L         +  ++K  V ++         +  L
Sbjct: 230 EKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 138 DLTDCYNLELIPPGVLSRLRKLEELYMSH 166
                Y  E +P     RL  L   +  H
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 30/178 (16%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL-------------------L 52
            +  F  L  ++L  N ++E  D      L+ L L  N++                    
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112

Query: 53  VIPDPFFQGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGEL 108
            +     QG    K + L    I M+         S ++ L L       +    L    
Sbjct: 113 RVSCSRGQG---KKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 109 SGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             LE L+L  + + ++       + L+ LDL+    L  + P        +  + + +
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRN 223

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 23/119 (19%)

Query: 85  LSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTD 141
            +  +  ++   + L     SL      ++ LDLS + +++I        + L LL+L+ 
Sbjct: 9   GNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 142 CYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHID 200
              L       L  L  L  L +++               N    EL     + +LH  
Sbjct: 68  N-VLYETLD--LESLSTLRTLDLNN---------------N-YVQELLVGPSIETLHAA 107

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 30/193 (15%)

Query: 14  NTFEDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
           +   D   + L  N I E+ DG       L  L L  N +  I    F  +  L+ L L 
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPVS-- 127
             ++   P  +     L+ LR+       +      G L+ + +++L  + +    +   
Sbjct: 109 KNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSGIENG 165

Query: 128 -FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA-KF 185
            F  +  L  + + D  N+  IP G+      L EL++                 N    
Sbjct: 166 AFQGMKKLSYIRIADT-NITTIPQGLPP---SLTELHLDG---------------NKITK 206

Query: 186 IELGALSRLTSLH 198
           ++  +L  L +L 
Sbjct: 207 VDAASLKGLNNLA 219

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 23/158 (14%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
                LT + L  N I +V          L  L L  N +  + +        L+ L L 
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRL 131
             ++V  P  L+    ++ + L   N++  +                S+    P    + 
Sbjct: 249 NNKLVKVPGGLADHKYIQVVYLHN-NNISAIG---------------SNDFCPPGYNTKK 292

Query: 132 SHLRLLDLTDCYN---LELIPPGVLSRLRKLEELYMSH 166
           +    + L    N      I P     +     + + +
Sbjct: 293 ASYSGVSLFS--NPVQYWEIQPSTFRCVYVRAAVQLGN 328

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 56/470 (11%), Positives = 133/470 (28%), Gaps = 54/470 (11%)

Query: 19  LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
                +  + + +    L      ++ L L  N L  I          L++L+L    + 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 77  SPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
                L  LS LRTL L+       +  +     +E L  + ++++ +     R    + 
Sbjct: 72  ETL-DLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVS--CSRGQGKKN 124

Query: 137 LDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTS 196
           + L +   + ++         +++ L +  +    + ++              +   L  
Sbjct: 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLN----EIDTVNFAEL------AASSDTLEH 173

Query: 197 LHI------DIPKGEIMPS----DMSLPNLTSFSITIGEEDTLNDFIELFLENFNK--RC 244
           L++      D+    +       D+S   L                  + L N NK    
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS---AAGVTWISLRN-NKLVLI 229

Query: 245 SRAMGLSQDMRISALHS-WIKNLLLRSEILALIEVNDL-ENIFSNLANDDFNELMFLYIF 302
            +A+  SQ++    L         LR        V  + +     L   +  E     + 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 303 GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGS 362
                 C         R+   K +   +   Q   E    +      +  + +D +    
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQG-SETERLECERENQARQREIDALKEQ- 347

Query: 363 MLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRM 422
             + +   +    Q    L            E ++  + ++ +    +  +L       +
Sbjct: 348 -YRTVIDQVTLRKQAKITL------------EQKKKALDEQVSNGRRAHAELDGTLQQAV 394

Query: 423 TDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNR 472
             I            L+ +R                +  A  +  +Y+++
Sbjct: 395 GQIELQHATE-EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDP-FFQGMKDLKVL 68
           S +  +    I L  N I  + D       ++Q L L+ N +  +           L+ L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 69  DLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPVS 127
           +L    +      +   + L+TL L   N L  +       +G+  + L  + +  I  +
Sbjct: 175 NLQYNFIYDVKGQV-VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 128 FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMS 165
                +L   DL              S+ ++++ +   
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 11/159 (6%)

Query: 13  INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG 72
             + + L  ++L +N I++V   +   KL+ L L  N L  +  P FQ    +  + L  
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRN 223

Query: 73  IRMVSPPSSLSFLSNLRTLRLDY----CNHLPDLSLIGELSGLEILDLSKSDVNEIPV-S 127
            ++V    +L F  NL    L      C  L D           +  ++K  V ++   +
Sbjct: 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF----SKNQRVQTVAKQTVKKLTGQN 279

Query: 128 FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
               +   L      Y  E +P     RL  L+    + 
Sbjct: 280 EEECTVPTLGHYGA-YCCEDLPAPFADRLIALKRKEHAL 317

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 10/164 (6%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDP-FFQGMKDLKVL 68
           P   +   +T ISL  N +  +   L     L+   L+ N         FF   + ++ +
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 69  DLGGIRMVSPPSSLSFLSNLRTLRLDY--CNHLPDLSLIG----ELSGLEILDLSKSDVN 122
               ++ +    +    +           C  LP          +     +L    S+  
Sbjct: 268 AKQTVKKL-TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 123 EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
            +       +  R +D         +   V  R +    L    
Sbjct: 327 RLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQKK 369

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 14/161 (8%)

Query: 14  NTFEDLTGI---SLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDL 70
             F  L  +    +  N + E+P  L    L  L +  N +  +P   F G++++  +++
Sbjct: 96  KAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154

Query: 71  GG--IRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV 126
           GG  +              L  LR+       +P          L  L L  + +  I +
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK----DLPETLNELHLDHNKIQAIEL 210

Query: 127 -SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
               R S L  L L     + +I  G LS L  L EL++ +
Sbjct: 211 EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDN 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 27/191 (14%)

Query: 14  NTFEDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
               D T + L  NDI E+          L AL L  N +  I +  F  ++ L+ L + 
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVSFG 129
              +V  P +L   S+L  LR+   N +  +   +   L  +  +++  + +       G
Sbjct: 111 KNHLVEIPPNL--PSSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 130 RLSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA-KFIE 187
               L+L  L      L  IP  +      L EL++ H               N  + IE
Sbjct: 168 AFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLDH---------------NKIQAIE 209

Query: 188 LGALSRLTSLH 198
           L  L R + L+
Sbjct: 210 LEDLLRYSKLY 220

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 19/156 (12%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
           +  E L  + L  N I  +         KL  L L  N + +I +     +  L+ L L 
Sbjct: 190 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRL 131
             ++   P+ L  L  L+ + L   N++  +  + +   +                  + 
Sbjct: 250 NNKLSRVPAGLPDLKLLQVVYLHT-NNITKVG-VNDFCPVG--------------FGVKR 293

Query: 132 SHLRLLDLTDCY-NLELIPPGVLSRLRKLEELYMSH 166
           ++   + L +       + P     +     +   +
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 38/247 (15%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMKD 64
            + D  + N    +  I    +DI  V  G++  P +  LFL  N L  I       +K+
Sbjct: 32  SVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKN 88

Query: 65  LKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVN 122
           L  L L    I+ +S    L  L  L++L L++ N + D++ +  L  LE L L  + + 
Sbjct: 89  LGWLFLDENKIKDLSS---LKDLKKLKSLSLEH-NGISDINGLVHLPQLESLYLGNNKIT 144

Query: 123 EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN 182
           +I     RL+ L  L L D   +  I P  L+ L KL+ LY+S                N
Sbjct: 145 DIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSK---------------N 185

Query: 183 AKFIELGALSRLTSLH-IDIPKGEIMPSDMS-------LPNLTSFSITIGEEDTLNDFIE 234
               +L AL+ L +L  +++   E +   ++          + +   ++   + ++D  +
Sbjct: 186 -HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244

Query: 235 LFLENFN 241
               N  
Sbjct: 245 YEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 6e-12
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 12/150 (8%)

Query: 19  LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMV 76
           +     +   I ++       +     L+K  +          +  +  +      I+ V
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV 58

Query: 77  SPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
                + +L N+  L L+  N L D+  +  L  L  L L ++ + ++  S   L  L+ 
Sbjct: 59  QG---IQYLPNVTKLFLNG-NKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113

Query: 137 LDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           L L     +  I    L  L +LE LY+ +
Sbjct: 114 LSLEHN-GISDING--LVHLPQLESLYLGN 140

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 2e-15
 Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 11  PSINTFEDLTGISLM-FNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
              +  +DLT + +    ++ ++P  L   P++Q + +  N  +                
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA----- 297

Query: 69  DLGGIRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV 126
                      +       ++ + + Y N    P  + + ++  L +L+   + +     
Sbjct: 298 ----------LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           +FG    L  L+L     +  IP        ++E L  +H
Sbjct: 348 AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAH 386

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 20/166 (12%)

Query: 19  LTGISLMFNDIHEVPDGLE---------CPKLQALFLQKNHLLVIPDPFFQG-MKDLKVL 68
           L+ I+LM N + E+P                L ++ L+ N L  + D F    +  L  +
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 69  DLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL-------IGELSGLEILDLSKSDV 121
           DL        P+     S L+   +                  I     L  L +  +D+
Sbjct: 519 DLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 122 NEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
            ++        ++ +LD+ D  N+ +    V   + +     + + 
Sbjct: 579 RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYI-EAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 41/412 (9%), Positives = 103/412 (25%), Gaps = 96/412 (23%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS 77
               +      +   P   +   L    +  +          +       +      +  
Sbjct: 139 QKMRMHYQKTFVDYDP-REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 78  PPSSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
              ++  L+ LR   +     + + +    E    E     K+      + +  L  L  
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLTD 253

Query: 137 LDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN-AKFIELGALSRLT 195
           +++ +C NL  +P   L  L +++ + ++ +    +  S E  + +     +     ++ 
Sbjct: 254 VEVYNCPNLTKLPTF-LKALPEMQLINVACN----RGISGEQLKDDWQALADAPVGEKIQ 308

Query: 196 SLHID---IPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQ 252
            ++I    +    +  S   +  L             N                      
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLY------NQLEGKLPA-------------- 348

Query: 253 DMRISALHSWIKNLLLRSEILALIEVNDLE----NIFSNLANDDFNELMFLYIFGCNEMK 308
                +    + +L L          N +     N            +  L         
Sbjct: 349 ---FGSEIK-LASLNLAY--------NQITEIPANFCGFTEQ-----VENLSFAHNK--- 388

Query: 309 CLLNSL-ERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKIL 367
             L  +       ++  +  +    N+       G +                      L
Sbjct: 389 --LKYIPNIFDAKSVSVMSAIDFSYNEI------GSVDGKNFDP---------------L 425

Query: 368 PSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDL 419
                +   N+  + + +              I+K   ELFS+   L+ I+L
Sbjct: 426 DPTPFK-GINVSSINLSNN------------QISKFPKELFSTGSPLSSINL 464

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 60/433 (13%), Positives = 130/433 (30%), Gaps = 66/433 (15%)

Query: 37  ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG-----GIRMVSPPSSLSFLSNLRTL 91
              ++  L L+              + +L+VL LG         +  P  +S   +    
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 92  RLDYCNHLPDLSLIGELSGLEILDLSKSDVN------EIPVSFGRLSHLRLLDLTDCYNL 145
           +    ++    + +      +  DL K  +N       I  S         +      N+
Sbjct: 139 QKMRMHYQK--TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NI 195

Query: 146 ELIPPGVLSRLRKLEELYMSH------SFCHWQFESEEDTRSNAKFI--ELGALSRLTSL 197
             +    + RL KL + YM +      + C        +     K    +   L  LT +
Sbjct: 196 TFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 198 HI-DIPKGEIMPSDMS-LPNLTSFSIT---IGEEDTLNDFIELFLENFNKRCSRAMGLSQ 252
            + + P    +P+ +  LP +   ++        + L D  +   +       + + +  
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 253 -DMRISALHSWIKNLLLRS-EILALIEVNDLENIFSNLANDDFNELMFLYIFGCN----- 305
            +++   + + ++   ++   +L     N LE       +    +L  L +         
Sbjct: 315 NNLKTFPVETSLQK--MKKLGMLEC-LYNQLEGKLPAFGS--EIKLASLNLAYNQITEIP 369

Query: 306 -EMKCLLNSLER--------------TQRVTLRKLEWLFIRENQ--NFVEICHGQLPA-- 346
                    +E                   ++  +  +    N+  +        L    
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 347 GCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETE 406
               NV  +++      +   P  L  +   L  + +    L     EI + N  K+E E
Sbjct: 430 FKGINVSSINLSNN--QISKFPKELFSTGSPLSSINLMGNMLT----EIPK-NSLKDENE 482

Query: 407 LFSSLEKLTLIDL 419
            F +   LT IDL
Sbjct: 483 NFKNTYLLTSIDL 495

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 23/172 (13%)

Query: 32  VPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPPSSLSFLSNLR 89
           +P GL    +++L L  N +  I +   Q   +L+ L L    I  +    S S L +L 
Sbjct: 46  IPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLE 103

Query: 90  TLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS--FGRLSHLRLLDLTDCYNL 145
            L L Y N+L +LS      LS L  L+L  +    +  +  F  L+ L++L + +    
Sbjct: 104 HLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 146 ELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSL 197
             I     + L  LEEL +  S      +S           E  +L  + ++
Sbjct: 163 TKIQRKDFAGLTFLEELEIDAS----DLQS----------YEPKSLKSIQNV 200

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 59/397 (14%), Positives = 94/397 (23%), Gaps = 121/397 (30%)

Query: 32  VPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPPSSLSFLSNLR 89
               L C +          L  IP    +    +K LDL    I  +   S L    NL+
Sbjct: 24  NQASLSCDRNGICKGSSGSLNSIPSGLTE---AVKSLDLSNNRITYI-SNSDLQRCVNLQ 79

Query: 90  TLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP 149
            L L   N +  +                        SF  L  L  LDL+    L  + 
Sbjct: 80  ALVLTS-NGINTIE---------------------EDSFSSLGSLEHLDLSYN-YLSNLS 116

Query: 150 PGVLSRLRKLEELYMSHSFCHWQFESEEDTRS---NAKFIELGALSRLTSLHIDIPKGEI 206
                 L  L  L +      ++   E    S     + + +G +   T +      G  
Sbjct: 117 SSWFKPLSSLTFLNLLG--NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-- 172

Query: 207 MPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNL 266
                 L  L                 EL ++                 + +        
Sbjct: 173 ------LTFLE----------------ELEIDA--------------SDLQSYE------ 190

Query: 267 LLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLE 326
                               ++ N     +  L +            L          +E
Sbjct: 191 ---------------PKSLKSIQN-----VSHLILHMKQ-----HILLLEIFVDVTSSVE 225

Query: 327 WLFIRENQ----NFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLM 382
            L +R+      +F E+  G+  +  L        V            L+     L  L 
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNS--LIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283

Query: 383 VESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDL 419
               +L  SV              +F  L  L  I L
Sbjct: 284 FSRNQL-KSV-----------PDGIFDRLTSLQKIWL 308

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 17/189 (8%)

Query: 27  NDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS--PPSSLSF 84
           + + E+P  L       L      L VI    F G  DL+ +++    ++        S 
Sbjct: 19  SKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77

Query: 85  LSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTD 141
           L  L  +R++  N+L  ++      L  L+ L +S + +  +P V         LLD+ D
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 142 CYNLELIPPGVLSRLR-KLEELYMSH---------SFCHWQFESEEDTRSNA-KFIELGA 190
             N+  I       L  +   L+++          +F   Q +    + +N  + +    
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 191 LSRLTSLHI 199
               +   I
Sbjct: 198 FHGASGPVI 206

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 12/155 (7%)

Query: 19  LTGISLMFNDIHEVPDG--LECPKLQALFLQKN-HLLVIPDPFFQGM-KDLKVLDLGGIR 74
           L  + +    I  +PD   +   +   L +Q N ++  I    F G+  +  +L L    
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 75  MVSPPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPV-SFGRL 131
           +    +S    + L  L L   N+L +L   +    SG  ILD+S++ ++ +P      L
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 132 SHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
             LR       YNL+ +P   L +L  L E  +++
Sbjct: 226 KKLRARST---YNLKKLPT--LEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 44/241 (18%), Positives = 78/241 (32%), Gaps = 41/241 (17%)

Query: 109 SGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
                L    + +  I   +F     L  ++++    LE+I   V S L KL E+ +  +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 168 FCHWQFESEEDTRSNAKFIELGA---LSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG 224
                        +N  +I   A   L  L  L I     + +P    + +L    + I 
Sbjct: 90  -------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 225 EEDTLNDFIELFLEN-FNKRCSRAMGLS-QDMRISALHSWIKNLLLRSEILALIEVNDLE 282
           +    N  I     N F      ++ L      I  +H+   N   + + L L + N+LE
Sbjct: 137 D----NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLE 191

Query: 283 NI----FSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVE 338
            +    F   +       + L I            +       L  L+ L  R   N  +
Sbjct: 192 ELPNDVFHGASG-----PVILDISR--------TRIHSLPSYGLENLKKLRARSTYNLKK 238

Query: 339 I 339
           +
Sbjct: 239 L 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 27  NDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG---IRMVSPPSSLS 83
            DI  +P     P  Q L L + HL  IP   F  + ++  + +     ++ +    S  
Sbjct: 21  KDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFY 77

Query: 84  FLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIP--VSFGRLSHLRLLDL 139
            LS +  + +    +L  +    + EL  L+ L +  + +   P            +L++
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 140 TDCYNLELIPPGVLSRLRK-LEELYMSH 166
           TD   +  IP      L      L + +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYN 165

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 24/190 (12%), Positives = 55/190 (28%), Gaps = 36/190 (18%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKN-HLLVIPDPFFQGMKDLKV 67
           PS+        + L+   +  +P       P +  +++  +  L  +    F  +  +  
Sbjct: 27  PSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 68  LDLGGIRMVS--PPSSLSFLSNLRTLRLDYCN--HLPDLSLIGEL--------------- 108
           +++   R ++   P +L  L  L+ L +        PDL+ +                  
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 109 -----------SGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157
                      +    L L  +    +       + L  + L     L +I       + 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 158 -KLEELYMSH 166
                L +S 
Sbjct: 205 SGPSLLDVSQ 214

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 17/97 (17%)

Query: 108 LSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
               + L L ++ +  IP  +F  L ++  + ++    L+ +       L K+  + + +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 167 SFCHWQFESEEDTRSNAKFIELGA---LSRLTSLHID 200
           +              N  +I+  A   L  L  L I 
Sbjct: 90  T-------------RNLTYIDPDALKELPLLKFLGIF 113

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 21  GISLMFNDIHEVPD----GLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
           G S    +  +  +    GLE   ++   L K+ +  +    F    DL+ L L    + 
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 77  S-PPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPV-SFGRLS 132
               ++   L++L  L L   N L  +   +   L  LE+LDLS + +  +   SF  L 
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371

Query: 133 HLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           +L+ L L     L+ +P G+  RL  L+++++  
Sbjct: 372 NLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 65/398 (16%), Positives = 136/398 (34%), Gaps = 66/398 (16%)

Query: 39  PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYC 96
             +  + L  N +  + +  F  ++DL+ L +      +V   ++   LS+L  L+LDY 
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY- 88

Query: 97  NHLPDLS--LIGELSGLEILDLSKSDVNEIPV---SFGRLSHLRLLDLTDCYNLELIPP- 150
           N    L       L+ LE+L L++ +++   +    F  L+ L +L L D  N++ I P 
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPA 147

Query: 151 GVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD 210
                +R+   L ++ +    + +S          I    L      H  + +   +   
Sbjct: 148 SFFLNMRRFHVLDLTFN----KVKS----------ICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 211 MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRS 270
             +          G          L L     + S A      +  + + S I +     
Sbjct: 194 -DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---- 248

Query: 271 EILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCL------LNSLERTQRVTLRK 324
                +  +     F +  N  F  L        + +K        + +L ++       
Sbjct: 249 --SYNMGSSFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIFALLKSVFSHFTD 300

Query: 325 LEWLFIRENQNFVEICHGQLPAGC---LSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRL 381
           LE L + +N+    I    +       L+++ +L++    + L  + S + ++   L+ L
Sbjct: 301 LEQLTLAQNE----INK--IDDNAFWGLTHLLKLNL--SQNFLGSIDSRMFENLDKLEVL 352

Query: 382 MVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDL 419
            +               +I     + F  L  L  + L
Sbjct: 353 DLSYN------------HIRALGDQSFLGLPNLKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 71/391 (18%), Positives = 120/391 (30%), Gaps = 74/391 (18%)

Query: 19  LTGISLMFNDIHEVP-----DGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI 73
           L  + +       V       GL    L  L L  N  L +    F G+ +L+VL L   
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGL--SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113

Query: 74  RMVS---PPSSLSFLSNLRTLRLDYCNHLPDLSLIG---ELSGLEILDLSKSDVNEIPV- 126
            +       +    L++L  L L   N++  +        +    +LDL+ + V  I   
Sbjct: 114 NLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

Query: 127 SFGRLSHLRLLDLTDCYN---------LELIPPGVLSRLRKLEELYMSHSFCHWQFESEE 177
                       L              L     G   +   +  L +S +     F+   
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN----GFKESM 228

Query: 178 DTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFL 237
             R    F +  A +++ SL +       M S     N         +    +      L
Sbjct: 229 AKR----FFDAIAGTKIQSLILSNS--YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 238 ENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENI----FSNLANDDF 293
              +             +I AL   + +     E L L   N++  I    F  L +   
Sbjct: 283 SK-S-------------KIFALLKSVFSHFTDLEQLTL-AQNEINKIDDNAFWGLTH--- 324

Query: 294 NELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGC---LS 350
             L+ L +   N     L S++      L KLE L +  N          L       L 
Sbjct: 325 --LLKLNLSQ-N----FLGSIDSRMFENLDKLEVLDLSYNH------IRALGDQSFLGLP 371

Query: 351 NVKRLDVVGCGSMLKILPSHLVQSFQNLQRL 381
           N+K L +    + LK +P  +     +LQ++
Sbjct: 372 NLKELAL--DTNQLKSVPDGIFDRLTSLQKI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 44/218 (20%), Positives = 81/218 (37%), Gaps = 26/218 (11%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            + D  S    + +T +      I  +        L  +    N L  I     + +  L
Sbjct: 35  NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKL 92

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
             + +    I  ++P   L+ L+NL  L L + N + D+  +  L+ L  L+LS + +++
Sbjct: 93  VDILMNNNQIADITP---LANLTNLTGLTL-FNNQITDIDPLKNLTNLNRLELSSNTISD 148

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNA 183
           I  +   L+ L+ L       +  + P  L+ L  LE L +S +    +           
Sbjct: 149 IS-ALSGLTSLQQLSF--GNQVTDLKP--LANLTTLERLDISSN----KVSDIS------ 193

Query: 184 KFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSI 221
               L  L+ L SL     +   +     L NL   S+
Sbjct: 194 ---VLAKLTNLESLIATNNQISDITPLGILTNLDELSL 228

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 26/217 (11%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLK 66
           +    +     +     L   ++ +     +  ++  L   +  +  I     + + +L 
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLT 71

Query: 67  VLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124
            ++     +  ++P   L  L+ L  + ++  N + D++ +  L+ L  L L  + + +I
Sbjct: 72  QINFSNNQLTDITP---LKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQITDI 127

Query: 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK 184
                 L++L  L+L+    +  I    LS L  L++L   +                  
Sbjct: 128 D-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQV--------------TD 169

Query: 185 FIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSI 221
              L  L+ L  L I   K   +     L NL S   
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.8 bits (182), Expect = 5e-14
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 30/220 (13%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            +K    +    +LT I+   N + ++       KL  + +  N +  I       + +L
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
             L L    I  + P   L  L+NL  L L   N + D+S +  L+ L+ L       + 
Sbjct: 115 TGLTLFNNQITDIDP---LKNLTNLNRLELSS-NTISDISALSGLTSLQQLSFGNQVTDL 170

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN- 182
            P     L+ L  LD++    +  I    L++L  LE L  ++               N 
Sbjct: 171 KP--LANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATN---------------NQ 210

Query: 183 -AKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSI 221
            +    LG L+ L  L ++  + + + +  SL NLT   +
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 250

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 28/161 (17%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLK 66
           L+D   I+  ++LT ++L FN+I ++       KLQ LF   N +               
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV--------------- 343

Query: 67  VLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV 126
                     S  SSL+ L+N+  L   + N + DL+ +  L+ +  L L+       PV
Sbjct: 344 ----------SDVSSLANLTNINWLSAGH-NQISDLTPLANLTRITQLGLNDQAWTNAPV 392

Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
           ++   +++ + +        LI P  +S      E  ++ +
Sbjct: 393 NY--KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 12/163 (7%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           ++ D   +     +T + L  N +  V        ++ L L    +  +      G+ +L
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNL 131

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
           +VL L    I  +SP   L+ L+NL+ L +     + DL+ +  LS L  L    + +++
Sbjct: 132 QVLYLDLNQITNISP---LAGLTNLQYLSIGN-AQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           I      L +L  + L +    ++ P   L+    L  + +++
Sbjct: 188 IS-PLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 32/163 (19%), Positives = 69/163 (42%), Gaps = 12/163 (7%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            + D  +    + +T +S     +  +        L  L L+ N +  +     + +  +
Sbjct: 30  NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKI 87

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
             L+L G  ++ VS    ++ L +++TL L     + D++ +  LS L++L L  + +  
Sbjct: 88  TELELSGNPLKNVSA---IAGLQSIKTLDLTS-TQITDVTPLAGLSNLQVLYLDLNQITN 143

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           I      L++L+ L + +   +  + P  L+ L KL  L    
Sbjct: 144 IS-PLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADD 182

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLK 66
           +     +    +L G+ L  N I ++       K+  L L  N L  +      G++ +K
Sbjct: 53  VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIK 110

Query: 67  VLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124
            LDL    I  V+P   L+ LSNL+ L LD  N + ++S +  L+ L+ L +  + V+++
Sbjct: 111 TLDLTSTQITDVTP---LAGLSNLQVLYLDL-NQITNISPLAGLTNLQYLSIGNAQVSDL 166

Query: 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
                 LS L  L   D   +  I P  L+ L  L E+++ +
Sbjct: 167 T-PLANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKN 204

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 12/162 (7%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLK 66
           +          +   I+   +++ +     +   +  L      +  I     Q + +L 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLI 66

Query: 67  VLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124
            L+L    I  ++P   L  L+ +  L L   N L ++S I  L  ++ LDL+ + + ++
Sbjct: 67  GLELKDNQITDLAP---LKNLTKITELELSG-NPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
                 LS+L++L L     +  I P  L+ L  L+ L + +
Sbjct: 123 T-PLAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGN 160

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 10/151 (6%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           ++ D   +    +L  + L  N I  +        LQ L +    +  +       +  L
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKL 175

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
             L      I  +SP   L+ L NL  + L   N + D+S +   S L I+ L+   +  
Sbjct: 176 TTLKADDNKISDISP---LASLPNLIEVHLKN-NQISDVSPLANTSNLFIVTLTNQTITN 231

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLS 154
            PV +   ++L + ++    +   I P  +S
Sbjct: 232 QPVFY--NNNLVVPNVVKGPSGAPIAPATIS 260

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 36/204 (17%), Positives = 75/204 (36%), Gaps = 27/204 (13%)

Query: 33  PDGLECPKL-----QALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPPSSLSFL 85
              + CP         L   K  L  +P           +LDL    +  +    + + L
Sbjct: 7   RSVVSCPANCLCASNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRL 63

Query: 86  SNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDC 142
           +NL +L L + +   +   + +  +  L  LDLS + ++ +    F  L  L +L L + 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVP-VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122

Query: 143 YNLELIPPGVLSRLRKLEELYMSHSFCHWQFES-EEDTRSNAKFIELGALSRLTSLHIDI 201
            ++ ++       + +L++LY+S +    Q      +        +   L +L  L +  
Sbjct: 123 -HIVVVDRNAFEDMAQLQKLYLSQN----QISRFPVEL-----IKDGNKLPKLMLLDLSS 172

Query: 202 PKGEIMPSDM--SLPNLTSFSITI 223
            K + +P      LP      + +
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVP-----DGLECPKLQALFLQKNHLLVIPDPFFQG 61
           L + P  +       + L  N++  +        L    L +L L  NHL  I    F  
Sbjct: 30  LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRL--TNLHSLLLSHNHLNFISSEAFVP 86

Query: 62  MKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLS 117
           + +L+ LDL    +  +      S L  L  L L   +   +   +    ++ L+ L LS
Sbjct: 87  VPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLS 144

Query: 118 KSDVNEIP----VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163
           ++ ++  P        +L  L LLDL+    L+ +P   L +L    +  
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG 193

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.4 bits (180), Expect = 8e-14
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 8/162 (4%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPF--FQGMKDLK 66
              +       +    N + +          +L+ L LQ N L  +         MK L+
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 67  VLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124
            LD+    +         S+  +L +L +   N L D         +++LDL  + +  I
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRCLPPRIKVLDLHSNKIKSI 436

Query: 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           P    +L  L+ L++     L+ +P G+  RL  L+++++  
Sbjct: 437 PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.7 bits (173), Expect = 6e-13
 Identities = 62/421 (14%), Positives = 125/421 (29%), Gaps = 55/421 (13%)

Query: 24  LMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSL 82
              N +  VP  L   K   L + +N++  +       +  L++L +   R+     S  
Sbjct: 7   RSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF 65

Query: 83  SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS--FGRLSHLRLLDLT 140
            F   L  L L   N L  +S       L+ LDLS +  + +P+   FG +S L+ L L+
Sbjct: 66  KFNQELEYLDL-SHNKLVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 141 DCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHID 200
              +LE      ++ L   + L +                +  +  +   L    +  + 
Sbjct: 124 TT-HLEKSSVLPIAHLNISKVLLVLGE-------------TYGEKEDPEGLQDFNTESLH 169

Query: 201 IPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALH 260
           I            P    F   +         +EL         ++       +     +
Sbjct: 170 I----------VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 261 SWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRV 320
             + NL L +        N    I   + +     + +  I        L          
Sbjct: 220 PKLSNLTLNN---IETTWNSFIRILQLVWH---TTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 321 TLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQR 380
           +L+ L    +  +       +        SN+   +     S  +++             
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEI---FSNMNIKNF--TVSGTRMVHMLCPSKISPFLH 328

Query: 381 LMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLP--RMTDIWKGDTQFVSLHNL 438
           L   +  L  +VFE                L +L  + L   ++ ++ K       + +L
Sbjct: 329 LDFSNNLLTDTVFEN------------CGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 439 K 439
           +
Sbjct: 377 Q 377

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 9/165 (5%)

Query: 10  WPSINTFEDLTGISLMFNDIHEVPDGLEC--PKLQALFLQKNHLLVIPDPFFQGMKDLKV 67
           W +   +  ++ + L         D        L    +  +         ++   ++ +
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 68  LDLGGIRM-VSPPSSLSFLSNLRTLRLDYCNHLPDLSL--IGELSGLEILDLSKSDVNEI 124
            +       +      S +S    L     N L D      G L+ LE L L  + + E+
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSN-NLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 125 PVS---FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
                   ++  L+ LD++          G  S  + L  L MS 
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 71/461 (15%), Positives = 149/461 (32%), Gaps = 66/461 (14%)

Query: 18  DLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM 75
             T +++  N I E+     L   KL+ L +  N +  +    F+  ++L+ LDL   ++
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 76  VSPPSSLSF--LSNLRTLRLDYC--NHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGR 130
                 +S     NL+ L L +   + LP     G +S L+ L LS + + +  V     
Sbjct: 82  ----VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLR--KLEELYMSHSFCHWQFESEEDTRSNAKFIEL 188
           L+  ++L +      E   P  L       L  ++ ++   H+  +    T +N +   +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 189 GALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIEL---FLENFNKRCS 245
             +         +     + ++  L NLT  +I       +     +    +  F+    
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 246 RAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLAND-----DFNELMFLY 300
           +  G           + +K L +   +  +        I+   +N        +    ++
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ-SYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 301 IFGCNEMKCL---------LNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSN 351
           +   +++            L          L +LE L ++ NQ   E+         + +
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKS 375

Query: 352 VKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNI----------- 400
           +++LD+    S+            ++L  L + S  L  ++F      I           
Sbjct: 376 LQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434

Query: 401 -----AKEETEL-----------------FSSLEKLTLIDL 419
                  +   L                 F  L  L  I L
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 2e-13
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 9   DWPSINTFEDLTGISLMFNDIH---EVPDGLECPKLQALFLQKNHL-LVIPDPF--FQGM 62
              S+ +   L  +++  N +    +V  GL+   L+ L L  N +       +    G 
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 63  KDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVN 122
            +LK L + G ++ S    +S   NL  L +   N    +  +G+ S L+ LD+S + ++
Sbjct: 178 GELKHLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236

Query: 123 -EIPVSFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSH 166
            +   +    + L+LL+++        IPP     L+ L+ L ++ 
Sbjct: 237 GDFSRAISTCTELKLLNISSN-QFVGPIPP---LPLKSLQYLSLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 51/236 (21%), Positives = 86/236 (36%), Gaps = 37/236 (15%)

Query: 14  NTFEDLTGISLMFNDIH-EVPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDL 70
           N    L  + L  N    ++P  L  C +L +L L  N+L   IP      +  L+ L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKL 449

Query: 71  ------GGIRMVSPPSSLSFLSNLRTLRLDYCN---HLPDLSLIGELSGLEILDLSKSDV 121
                 G I     P  L ++  L TL LD+ +    +P  S +   + L  + LS + +
Sbjct: 450 WLNMLEGEI-----PQELMYVKTLETLILDFNDLTGEIP--SGLSNCTNLNWISLSNNRL 502

Query: 122 N-EIPVSFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSH---------SFCH 170
             EIP   GRL +L +L L++  +    IP   L   R L  L ++          +   
Sbjct: 503 TGEIPKWIGRLENLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 171 WQFESEEDTRSNAKFIELGALSRLTSLHIDIP----KGEIMPSDMSLPNLTSFSIT 222
              +   +  +  +++ +         H        +G        L      +IT
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 25/175 (14%)

Query: 57  PFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCN---HLPDLSLIGELSGLEI 113
                +  L+ L L    +    S     ++L +L L   +    +  L+ +G  SGL+ 
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 114 LDLSKSDVN-EIPVS-FGRLSHLRLLDLTDCYNLE-LIPPGV--LSRLRKLEELYMSHSF 168
           L++S + ++    VS   +L+ L +LDL+   ++      G        +L+ L +S + 
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGN- 188

Query: 169 CHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK--GEIMPSDMSLPNLTSFSI 221
              +   +         +++     L  L +        I P       L    I
Sbjct: 189 ---KISGD---------VDVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDI 230

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 5e-11
 Identities = 48/216 (22%), Positives = 80/216 (37%), Gaps = 29/216 (13%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM-- 75
           DL+   L           L    L++LFL  +H +      F+    L  LDL    +  
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH-INGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 76  -VSPPSSLSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVN-EIPVSF--- 128
            V+  +SL   S L+ L +          +S   +L+ LE+LDLS + ++    V +   
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 129 GRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIE 187
                L+ L ++    +   +    +SR   LE L +S +     F +            
Sbjct: 175 DGCGELKHLAISGN-KISGDVD---VSRCVNLEFLDVSSN----NFSTG--------IPF 218

Query: 188 LGALSRLTSLHIDIPK--GEIMPSDMSLPNLTSFSI 221
           LG  S L  L I   K  G+   +  +   L   +I
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 5e-11
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 45/223 (20%)

Query: 19  LTGISLMFNDIH-EVPDGLE----CPKLQALFLQKNHL-LVIPDPFFQGMKDLKVLDLGG 72
           L  + L  N I      G      C +L+ L +  N +   +         +L+ LD+  
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSS 209

Query: 73  IRMVSPPSSLSFLSNLRTLRLDYCN---HLPDLSLIGELSGLEILDLSKSDVN-EIPVSF 128
               +    L   S L+ L +              I   + L++L++S +     IP   
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFS--RAISTCTELKLLNISSNQFVGPIPPL- 266

Query: 129 GRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFI- 186
             L  L+ L L +       IP  +      L  L +S +     F            + 
Sbjct: 267 -PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGN----HFYGA---------VP 311

Query: 187 -ELGALSRLTSLHID-------IPKGEIMPSDMSLPNLTSFSI 221
              G+ S L SL +        +P   +    + +  L    +
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTL----LKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 5e-11
 Identities = 57/185 (30%), Positives = 71/185 (38%), Gaps = 42/185 (22%)

Query: 19  LTGISLMFNDIH-EVPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRM 75
           LTG+ L  N  +  VP     C  L++L L  N+    +P      M+ LKVLDL     
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 76  VSP-PSSLSFLS-NLRTLRLDYCN---------------HLPDLSL------------IG 106
               P SL+ LS +L TL L   N                L +L L            + 
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 107 ELSGLEILDLSKSDVN----EIPVSFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEE 161
             S L  L LS    N     IP S G LS LR L L     LE  IP   L  ++ LE 
Sbjct: 416 NCSELVSLHLSF---NYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLET 470

Query: 162 LYMSH 166
           L +  
Sbjct: 471 LILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 6e-09
 Identities = 39/190 (20%), Positives = 58/190 (30%), Gaps = 42/190 (22%)

Query: 11  PSINTFEDLTGISLMFNDIH-EVPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKV 67
             I   E+L  + L  N     +P  L +C  L  L L  N     IP   F+    +  
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567

Query: 68  LDLGGIRMVSP----------------------PSSLSFLSNLRTLRLDYCNHL--PDLS 103
             + G R V                           L+ LS      +            
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS-RVYGGHTSP 626

Query: 104 LIGELSGLEILDLSKSDVN----EIPVSFGRLSHLRLLDLTDCYNLEL---IPPGVLSRL 156
                  +  LD+S    N     IP   G + +L +L+L   +N  +   IP   +  L
Sbjct: 627 TFDNNGSMMFLDMSY---NMLSGYIPKEIGSMPYLFILNLG--HND-ISGSIPDE-VGDL 679

Query: 157 RKLEELYMSH 166
           R L  L +S 
Sbjct: 680 RGLNILDLSS 689

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 31/148 (20%), Positives = 44/148 (29%), Gaps = 31/148 (20%)

Query: 11  PSINTFEDLTGISLMFNDIH---EVPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDL 65
             I             N +       + L          +           P F     +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS-PTFDNNGSM 634

Query: 66  KVLDL------GGIRMVSPPSSLSFLSNLRTLRLDYCNHL----PDLSLIGELSGLEILD 115
             LD+      G I     P  +  +  L  L L   N +    P    +G+L GL ILD
Sbjct: 635 MFLDMSYNMLSGYI-----PKEIGSMPYLFILNLG-HNDISGSIP--DEVGDLRGLNILD 686

Query: 116 LSKSDVN----EIPVSFGRLSHLRLLDL 139
           LS    N     IP +   L+ L  +DL
Sbjct: 687 LSS---NKLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 54/296 (18%), Positives = 99/296 (33%), Gaps = 70/296 (23%)

Query: 103 SLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGV-LSRLRKLEE 161
           S +  L+GLE L LS S +N     F   + L  LDL+       +     L     L+ 
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 162 LYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLT-SFS 220
           L +S +   +  +     +          L+ L  L            D+S  +++ +  
Sbjct: 131 LNVSSNTLDFPGKVSGGLK----------LNSLEVL------------DLSANSISGANV 168

Query: 221 ITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVND 280
           +     D   +   L + + NK       +S D+ +S   + ++ L + S        N+
Sbjct: 169 VGWVLSDGCGELKHLAI-SGNK-------ISGDVDVSRCVN-LEFLDVSS--------NN 211

Query: 281 LENIFSNLANDDFNELMFLYIFGCNEMKCLLN-----SLERTQRVTLRKLEWLFIRENQN 335
                  L +   + L  L I G       L+     ++         +L+ L I  N  
Sbjct: 212 FSTGIPFLGD--CSALQHLDISGNK-----LSGDFSRAIST-----CTELKLLNISSN-Q 258

Query: 336 FVEICHGQLPAGCLSNVKRLDVVGC---GSMLKILPSHLVQSFQNLQRLMVESCEL 388
           F     G +P   L +++ L +      G     +P  L  +   L  L +     
Sbjct: 259 F----VGPIPPLPLKSLQYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHF 306

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            + D  + N    +  I    +DI  V      P +  LFL  N L  I       +K+L
Sbjct: 35  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNL 92

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
             L L    ++ +S    L  L  L++L L++ N + D++ +  L  LE L L  + + +
Sbjct: 93  GWLFLDENKVKDLSS---LKDLKKLKSLSLEH-NGISDINGLVHLPQLESLYLGNNKITD 148

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           I     RL+ L  L L D   +  I P  L+ L KL+ LY+S 
Sbjct: 149 IT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSK 187

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 12/163 (7%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           ++K    I    ++T + L  N + ++        L  LFL +N +  +     + +K L
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SSLKDLKKL 114

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
           K L L    I  ++    L  L  L +L L   N + D++++  L+ L+ L L  + +++
Sbjct: 115 KSLSLEHNGISDING---LVHLPQLESLYLGN-NKITDITVLSRLTKLDTLSLEDNQISD 170

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           I      L+ L+ L L+   ++  +    L+ L+ L+ L +  
Sbjct: 171 IV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 12/153 (7%)

Query: 16  FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--I 73
           F +    +L    + +     E   +  +    + +  +     Q + ++  L L G  +
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 80

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSH 133
             + P   L+ L NL  L LD  N + DLS + +L  L+ L L  + +++I      L  
Sbjct: 81  TDIKP---LANLKNLGWLFLDE-NKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQ 135

Query: 134 LRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           L  L L +   +  I    LSRL KL+ L +  
Sbjct: 136 LESLYLGNN-KITDITV--LSRLTKLDTLSLED 165

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 12/142 (8%)

Query: 27  NDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG--GIRMVSPPSSLSF 84
             I ++       +     L+K  +          +  +  +      I+ V     + +
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG---IQY 66

Query: 85  LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN 144
           L N+  L L+  N L D+  +  L  L  L L ++ V ++  S   L  L+ L L     
Sbjct: 67  LPNVTKLFLNG-NKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHN-G 123

Query: 145 LELIPPGVLSRLRKLEELYMSH 166
           +  I    L  L +LE LY+ +
Sbjct: 124 ISDING--LVHLPQLESLYLGN 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 2e-13
 Identities = 81/610 (13%), Positives = 179/610 (29%), Gaps = 192/610 (31%)

Query: 87  NLRTLRLDYCNH--LPDL--SLIGELSGLEILD-----LSKSDVNEIPVSFGRLSHL-RL 136
           +  T    Y     L     + +      ++ D     LSK +++ I +S   +S   RL
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 137 LDLTDCYNLELIPPGVLSRLR--------KLEELYMSHSFCHWQFESEEDTRSNA----- 183
                    E++   V   LR         ++      S     +  + D   N      
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 184 --------KFIEL-GALSRLTS-----LHIDIPKGEIMP------------SDMSLPNLT 217
                    +++L  AL  L       +      G  +                 +    
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLID-----G--VLGSGKTWVALDVCLSYKVQCKM 180

Query: 218 SFSI---TIGEEDT-------LNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLL 267
            F I    +   ++       L   +     N+  R   +  +    RI ++ + ++ LL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLL 238

Query: 268 LRSE----ILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLL--------NSL- 314
                   +L L+ V + +        + FN         C   K LL        + L 
Sbjct: 239 KSKPYENCLLVLLNVQNAKAW------NAFN-------LSC---KILLTTRFKQVTDFLS 282

Query: 315 -ERTQRVTLRKLEWLFIRENQ-----NFVEICHGQLPA-GCLSNVKRLDVVGCGSMLKIL 367
              T  ++L         +        +++     LP     +N +RL ++     ++  
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDG 340

Query: 368 PSHLVQSFQNLQRL-------MVESC-ELL-----------VSVFEIERVNI-------- 400
            +     + N + +       ++ES   +L           +SVF     +I        
Sbjct: 341 LAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLI 395

Query: 401 ----AKEETELF-SSLEKLTLI--DLPRMT--------DIWKGDTQFVSLHNLKKVRVEE 445
                K +  +  + L K +L+       T        ++        +LH      + +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----SIVD 451

Query: 446 CDELRQVFPAN--------------LG---KKAAAEEMV-----LYRNRRY-QIHIHATT 482
              + + F ++              +G   K     E +     ++ + R+ +  I   +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 483 STSSPTPSLGNLVS--------ITIRGCGKLRNLFTTSMVKSLVRLESLEVSS--CPTLQ 532
           +  + + S+ N +         I      K   L    ++  L ++E   + S     L+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR 569

Query: 533 EIIMDDEGEV 542
             +M ++  +
Sbjct: 570 IALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 65/389 (16%), Positives = 114/389 (29%), Gaps = 122/389 (31%)

Query: 28  DIHEVPDGLECPKLQALFLQKNH---LLVIPD--------PFFQGMK------DLKVLD- 69
            IH +       +L+ L   K +   LLV+ +         F    K        +V D 
Sbjct: 226 RIHSIQA-----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 70  LGGIRMV-----------SPPSSLSFLSN-----LRTLRLDYCNHLP-DLSLIGEL--SG 110
           L                 +P    S L        + L  +     P  LS+I E    G
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 111 LEILD----LSKSDVNEIPVSFGRLSHLRLLDLTDCY-NLEL------IPPGVLSRLRKL 159
           L   D    ++   +  I  S   L+ L   +    +  L +      IP  +LS +   
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--- 395

Query: 160 EELYMSHSFCHWQFESEEDTRSNA-KFIELGALSR----------------------LTS 196
                      W    + D      K  +   + +                        +
Sbjct: 396 -----------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 197 LH---ID---IPKGEIMPSDMSLPNLTSFS--------ITIGEEDTLNDFIELFLE-NFN 241
           LH   +D   IPK      D+  P L  +           I   + +  F  +FL+  F 
Sbjct: 445 LHRSIVDHYNIPKT-FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 242 KRCSRAMGLSQDMRISALH---------SWI-KNLLLRSEILALIEVNDLENIFSNLAND 291
           ++  R    + +   S L+          +I  N      ++  I  + L  I  NL   
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICS 562

Query: 292 DFNELMFLYIFGCNEMKCLLNSLER-TQR 319
            + +L+ + +    E + +     +  QR
Sbjct: 563 KYTDLLRIALM--AEDEAIFEEAHKQVQR 589

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 7e-13
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 13/162 (8%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           +L+  P +     L  I +  N + ++PD    P L+ +    N L  +P+   Q +  L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELPE--LQNLPFL 197

Query: 66  KVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP 125
             +      +   P       +L ++     N L +L  +  L  L  +    + +  +P
Sbjct: 198 TAIYADNNSLKKLPDL---PLSLESIVAGN-NILEELPELQNLPFLTTIYADNNLLKTLP 253

Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
                L  L + D      L  +P  +   L  L+      S
Sbjct: 254 DLPPSLEALNVRDN----YLTDLPE-LPQSLTFLDVSENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 5e-12
 Identities = 77/405 (19%), Positives = 132/405 (32%), Gaps = 78/405 (19%)

Query: 19  LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP 78
              + L    +  +P+    P L++L    N L  +P+     +K L V +     +   
Sbjct: 73  AHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQS-LKSLLVDNNNLKALSDL 129

Query: 79  PSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLD 138
           P        L  L +   N L  L  +   S L+I+D+  + + ++P        L  + 
Sbjct: 130 PP------LLEYLGV-SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIA 179

Query: 139 LTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIEL-GALSRLTSL 197
             +   LE +P   L  L  L  +Y  ++                   +L      L S+
Sbjct: 180 AGNN-QLEELPE--LQNLPFLTAIYADNN----------------SLKKLPDLPLSLESI 220

Query: 198 HIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRIS 257
                  E +P   +LP LT+         TL D     LE  N          +D  ++
Sbjct: 221 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPS-LEALN---------VRDNYLT 270

Query: 258 ALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERT 317
            L    ++L      L + E N    +     N     L +L           + SL   
Sbjct: 271 DLPELPQSL----TFLDVSE-NIFSGLSELPPN-----LYYLNASSNE-----IRSLCD- 314

Query: 318 QRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQN 377
                  LE L +  N+        +LPA     ++RL        L  +P       QN
Sbjct: 315 ---LPPSLEELNVSNNKL------IELPA-LPPRLERLIASFN--HLAEVPELP----QN 358

Query: 378 LQRLMVESCELLV---SVFEIERVNIAKEETELFSSLEKLTLIDL 419
           L++L VE   L         +E + +     E+    + L  + +
Sbjct: 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 19  LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP 78
           L  +++  N + E+P     P+L+ L    NHL  +P+      ++LK L +    +   
Sbjct: 319 LEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREF 372

Query: 79  PSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLD 138
           P     + +LR       +HL    +      L+ L +  + + E P     +  LR+  
Sbjct: 373 PDIPESVEDLR-----MNSHL--AEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNS 425

Query: 139 LTDCYNLELIPPGVLSRLRKLEELYMSH 166
                 +            KLE+    H
Sbjct: 426 E----RVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 17/136 (12%)

Query: 33  PDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLRTL 91
           P  +    LQ      ++L  +P      +K              + P        +   
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 92  RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPG 151
           RL  C                 L+L+   ++ +P     L  L       C +L  +P  
Sbjct: 64  RLRDCL----------DRQAHELELNNLGLSSLPELPPHLESLVA----SCNSLTELPEL 109

Query: 152 VLSRLRKLEELYMSHS 167
               L+ L     +  
Sbjct: 110 -PQSLKSLLVDNNNLK 124

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 22/161 (13%)

Query: 39  PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLRLDYCN 97
                +   K +L  +P       KD  +L L    + +   ++L   + L  L LD   
Sbjct: 10  ASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-A 65

Query: 98  HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157
            L  L + G L  L  LDLS + +  +P+    L  L +LD++    L  +P G L  L 
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLG 124

Query: 158 KLEELYMSHSFCHWQFESEEDTRSNA-KFIELGALSRLTSL 197
           +L+ELY+                 N  K +  G L+    L
Sbjct: 125 ELQELYLKG---------------NELKTLPPGLLTPTPKL 150

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 19  LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS- 77
           LT ++L   ++ ++      P L  L L  N L  +P    Q +  L VLD+   R+ S 
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSL 115

Query: 78  PPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS-FGRLSHL 134
           P  +L  L  L+ L L   N L  L   L+     LE L L+ +++ E+P      L +L
Sbjct: 116 PLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 135 RLLDLTDCYN-LELIPPGVLSRLRKLEELYMSH 166
             L L +  N L  IP G       L   ++  
Sbjct: 175 DTLLLQE--NSLYTIPKGFFGSH-LLPFAFLHG 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 13/163 (7%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            + D  S      +   +   ++I  +        L+ L L  N +  +     + +  L
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SPLKDLTKL 87

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
           + L +    ++ ++   S      L  L LD  N L D   +  L  LEIL +  + +  
Sbjct: 88  EELSVNRNRLKNLNGIPSA----CLSRLFLDN-NELRDTDSLIHLKNLEILSIRNNKLKS 142

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           I    G LS L +LDL     +       L+RL+K+  + ++ 
Sbjct: 143 IV-MLGFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           ++ D   +     L  +S+  N +  + +G+    L  LFL  N L          +K+L
Sbjct: 74  QISDLSPLKDLTKLEELSVNRNRLKNL-NGIPSACLSRLFLDNNELRDTDS--LIHLKNL 130

Query: 66  KVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP 125
           ++L +   ++ S    L FLS L  L L   N + +   +  L  +  +DL+       P
Sbjct: 131 EILSIRNNKLKSI-VMLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDLTGQKCVNEP 188

Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLS 154
           V       L + +     +   I P  +S
Sbjct: 189 VK--YQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 13/163 (7%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
            +          +    +L    + ++    E   +Q      +++  +     Q   +L
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNL 65

Query: 66  KVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
           K L L    I  +SP   L  L+ L  L ++  N L +L+ I     L  L L  +++ +
Sbjct: 66  KELHLSHNQISDLSP---LKDLTKLEELSVNR-NRLKNLNGIPSAC-LSRLFLDNNELRD 120

Query: 124 IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
              S   L +L +L + +   L+ I    L  L KLE L +  
Sbjct: 121 TD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHG 159

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 27  NDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG--GIRMVSPPSSLSF 84
             I++V             L K  +  +     + +  ++  +     I+ ++    + F
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAG---MQF 61

Query: 85  LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN 144
            +NL+ L L + N + DLS + +L+ LE L ++++ +  +  +    + L  L L +   
Sbjct: 62  FTNLKELHLSH-NQISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNN-E 117

Query: 145 LELIPPGVLSRLRKLEELYMSH 166
           L       L  L+ LE L + +
Sbjct: 118 LRDTDS--LIHLKNLEILSIRN 137

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.6 bits (165), Expect = 6e-12
 Identities = 41/216 (18%), Positives = 69/216 (31%), Gaps = 15/216 (6%)

Query: 19  LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP 78
           L  +S+  N +  +P      +L  L+   N L  +P         LK L + G R+ S 
Sbjct: 183 LQELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSL 236

Query: 79  PSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLD 138
           P   S    L+ L +   N L  L      SGL  L + ++ +  +P S   LS    ++
Sbjct: 237 PVLPS---ELKELMVSG-NRLTSLP--MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290

Query: 139 LTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLH 198
           L     L       L  +                  S    R         A   + +  
Sbjct: 291 LEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASA--PRETRALHLAAADWLVPARE 347

Query: 199 IDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIE 234
            +    +         N  +FS+ +       +FI+
Sbjct: 348 GEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIK 383

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 6e-10
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDL 70
                  +L+  S     +  +P GL       L++  N L  +P         L+ L +
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPSGL-----CKLWIFGNQLTSLPVLPPG----LQELSV 148

Query: 71  GGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGR 130
              ++ S P+  S L  L        N L  L +    SGL+ L +S + +  +P     
Sbjct: 149 SDNQLASLPALPSELCKLWAY----NNQLTSLPM--LPSGLQELSVSDNQLASLPTLPSE 202

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           L  L   +      L  +P         L+EL +S 
Sbjct: 203 LYKLWAYNN----RLTSLPAL----PSGLKELIVSG 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 31/146 (21%)

Query: 38  CPKLQALFLQKNHLLVIPDPFFQGMK-----------------DLKVLDLGGIRMVSPPS 80
                 L + ++ L  +PD     +                  +L+ L++ G ++ S P 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV 98

Query: 81  SLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLT 140
               L  L         HLP L      SGL  L +  + +  +PV    L  L + D  
Sbjct: 99  LPPGLLELSIFSNPL-THLPAL-----PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN- 151

Query: 141 DCYNLELIPPGVLSRLRKLEELYMSH 166
               L  +P        +L +L+  +
Sbjct: 152 ---QLASLPAL----PSELCKLWAYN 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 9/154 (5%)

Query: 16  FEDLTGISLMFNDIHEVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR 74
              LT I+L   ++ ++  G+E    ++ L +   H          G+ +L+ L + G  
Sbjct: 43  MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKD 99

Query: 75  MVS-PPSSLSFLSNLRTLRLDYCN-HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLS 132
           + S    +LS L++L  L + +       L+ I  L  +  +DLS +      +    L 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 133 HLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
            L+ L++     +       +    KL +LY   
Sbjct: 160 ELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 3/121 (2%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIH-EVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMK 63
              ++  I+   +L  + +M  D+  +    L     L  L +  +            + 
Sbjct: 77  HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 64  DLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE 123
            +  +DL     ++    L  L  L++L + + + + D   I +   L  L      +  
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQF-DGVHDYRGIEDFPKLNQLYAFSQTIGG 195

Query: 124 I 124
            
Sbjct: 196 K 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 28/189 (14%)

Query: 18  DLTGISLMFNDIHEVP----DGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI 73
           D   + L  N +  +P      L   KL+ L+L  N L  +P   F+ +K+L+ L +   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRL--TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 74  RMVS-PPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPV-SFG 129
           ++ + P      L NL  LRLD  N L  L   +   L+ L  L L  +++  +P   F 
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 130 RLSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIEL 188
           +L+ L+ L L    N L+ +P G   +L +L+ L + +              +  K +  
Sbjct: 155 KLTSLKELRL--YNNQLKRVPEGAFDKLTELKTLKLDN--------------NQLKRVPE 198

Query: 189 GALSRLTSL 197
           GA   L  L
Sbjct: 199 GAFDSLEKL 207

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 19  LTGISLMFNDIHEVP----DGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR 74
           LT +SL +N++  +P    D L    L+ L L  N L  +P+  F  + +LK L L   +
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKL--TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 75  MVS-PPSSLSFLSNLRTLRLD 94
           +   P  +   L  L+ L+L 
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQ 213

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 12/156 (7%)

Query: 18  DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM 75
             T ++   N   +          +LQ L LQ+N L           K++  L+   + +
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSL 412

Query: 76  VSPPSSL-----SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGR 130
            S  S       ++  ++  L L   N L           +++LDL  + +  IP     
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNL-SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471

Query: 131 LSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMS 165
           L  L+ L++    N L+ +P GV  RL  L+ +++ 
Sbjct: 472 LQALQELNVAS--NQLKSVPDGVFDRLTSLQYIWLH 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 66/412 (16%), Positives = 134/412 (32%), Gaps = 53/412 (12%)

Query: 18  DLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM 75
               +SL  N I E+         +L+ L L  N +  +    F   +DL+ LD+   R+
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 76  VSPPSSLSF--LSNLRTLRLDYCN---HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGR 130
                ++S   +++LR L L + N    LP     G L+ L  L LS +   ++      
Sbjct: 113 ----QNISCCPMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLP 165

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES--EEDTRSNAKFIEL 188
           ++HL L  +        I  G    L+      +   F      S     + +    ++L
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 189 GALSRLTSLHIDIPKGEIMPS-DMSLPNLTSFSITIGEEDTLNDFIELF---LENFNKRC 244
             +         +       +   +L N+T   I    + ++  F   +   +E  N   
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 245 SRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGC 304
                       +   + +K+L++       ++          L    F E+    +   
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEH-----VKNQVFLFSKEALY-SVFAEMNIKML-SI 338

Query: 305 NEMKCLL----NSLERTQRV----------------TLRKLEWLFIRENQNFVEICHGQL 344
           ++   +      S      +                TL++L+ L ++ N     + +   
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG----LKNFFK 394

Query: 345 PAGCLSNVKRLDVVGCG--SMLKILPSHLVQSFQNLQRLMVESCELLVSVFE 394
            A    N+  L+ +     S+            +++  L + S  L  SVF 
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 67/416 (16%), Positives = 133/416 (31%), Gaps = 63/416 (15%)

Query: 32  VPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRT 90
           VP  L  P+ +AL L +N +  +  P    + +L+VL L   R+ S       F  +L  
Sbjct: 46  VPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104

Query: 91  LRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS--FGRLSHLRLLDLTDCYNLELI 148
           L +   N L ++S    ++ L  LDLS +D + +PV   FG L+ L  L L+        
Sbjct: 105 LDV-SHNRLQNIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA------- 155

Query: 149 PPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP 208
                ++ R+L+ L ++H                +  I+ G    L   +  +       
Sbjct: 156 -----AKFRQLDLLPVAHLHLSCIL-----LDLVSYHIKGGETESLQIPNTTV------- 198

Query: 209 SDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLL 268
             + L    +   ++    ++N    L L N          L   +        + N+ L
Sbjct: 199 --LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 269 RSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWL 328
           +            +             + +L I+     + +           L+ L   
Sbjct: 257 QHIETT------WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 329 FIRENQNFVEICHGQLPAG---CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVES 385
            ++                     + +    +    S    +      S  +   L    
Sbjct: 311 HVKNQVFL------FSKEALYSVFAEMNIKML--SISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 386 CELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPR--MTDIWKGDTQFVSLHNLK 439
                SVF+              S+L++L  + L R  + + +K      ++ +L+
Sbjct: 363 NVFTDSVFQG------------CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 26/189 (13%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
           S      LT +    + I ++    +   L  L    N++  +         +L  L   
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACD 93

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRL 131
             ++ +    ++ L+ L  L  D  N L  L  + +   L  L+ +++ + EI VS    
Sbjct: 94  SNKLTNLD--VTPLTKLTYLNCDT-NKLTKLD-VSQNPLLTYLNCARNTLTEIDVS--HN 147

Query: 132 SHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGAL 191
           + L  L   DC+  + I    ++   +L  L  S      +             +++   
Sbjct: 148 TQLTEL---DCHLNKKITKLDVTPQTQLTTLDCS----FNKITE----------LDVSQN 190

Query: 192 SRLTSLHID 200
             L  L+ D
Sbjct: 191 KLLNRLNCD 199

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 26/189 (13%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
            ++    LT +    N      D     +L  L    N +  +        K L  L+  
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCD 199

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRL 131
              +      L+    L  L     N L ++  +  L+ L   D S + + E+ VS   L
Sbjct: 200 TNNITKLD--LNQNIQLTFLDCSS-NKLTEID-VTPLTQLTYFDCSVNPLTELDVS--TL 253

Query: 132 SHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGAL 191
           S L  L      +L  I    L+   +L                        K +++   
Sbjct: 254 SKLTTLHCIQT-DLLEID---LTHNTQLIYFQAEGC-------------RKIKELDVTHN 296

Query: 192 SRLTSLHID 200
           ++L  L   
Sbjct: 297 TQLYLLDCQ 305

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 57/386 (14%), Positives = 114/386 (29%), Gaps = 93/386 (24%)

Query: 53  VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLE 112
             PD  F        +        +   S   L+ L +L     + + D++ I +L+GL 
Sbjct: 14  WFPDDNFA-----SEVAAAFEMQATDTISEEQLATLTSLDCHN-SSITDMTGIEKLTGLT 67

Query: 113 ILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQ 172
            L  + +++  + +S  + ++L  L       L  +    ++ L KL  L    +    +
Sbjct: 68  KLICTSNNITTLDLS--QNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTN----K 117

Query: 173 FESEEDTRSNA-----------KFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSI 221
               + +++               I++   ++LT L   + K            LT+   
Sbjct: 118 LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177

Query: 222 TIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDL 281
                 + N   EL +                         +  L   +        N++
Sbjct: 178 ------SFNKITELDVSQNKL--------------------LNRLNCDT--------NNI 203

Query: 282 ENI-FSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEIC 340
             +  +         L FL           L  ++ T    L +L +     N       
Sbjct: 204 TKLDLNQNIQ-----LTFLDCSSNK-----LTEIDVTP---LTQLTYFDCSVNPL----- 245

Query: 341 HGQLPAGCLSNVKRLDVVGCG------SMLKILPSHLVQSFQNLQRLMVESCELLVSVFE 394
             +L    LS +  L  +         +    L     +  + ++ L V     L  +  
Sbjct: 246 -TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD- 303

Query: 395 IERVNIAKEETEL-FSSLEKLTLIDL 419
            +   I    TEL  S   KL  + L
Sbjct: 304 CQAAGI----TELDLSQNPKLVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 6/126 (4%)

Query: 12  SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLG 71
            +     L           +  D     +L  L  Q   +  +          L  L L 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLN 326

Query: 72  GIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRL 131
              +      +S  + L++L      H+ D S +G++  L     ++     +P      
Sbjct: 327 NTELTELD--VSHNTKLKSLSCVN-AHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTN 383

Query: 132 SHLRLL 137
           + L + 
Sbjct: 384 NSLTIA 389

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 41/169 (24%)

Query: 31  EVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLR 89
           E+P  L    +  + L++N + VIP   F   K L+ +DL   ++    P +   L +L 
Sbjct: 25  EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83

Query: 90  TLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN-LELI 148
           +L L   N + +L        L                F  L  L+LL L    N +  +
Sbjct: 84  SLVLYG-NKITELP-----KSL----------------FEGLFSLQLLLL--NANKINCL 119

Query: 149 PPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSL 197
                  L  L  L +                +  + I  G  S L ++
Sbjct: 120 RVDAFQDLHNLNLLSLYD--------------NKLQTIAKGTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 28/151 (18%)

Query: 17  EDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR 74
           E +T I L  N I  +P G      KL+ + L  N +  +    FQG++ L  L L G +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 75  MVS-PPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLS 132
           +   P S    L +L+ L L+  N +                      N + V +F  L 
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNA-NKI----------------------NCLRVDAFQDLH 128

Query: 133 HLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163
           +L LL L D   L+ I  G  S LR ++ ++
Sbjct: 129 NLNLLSLYD-NKLQTIAKGTFSPLRAIQTMH 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 19  LTGISLMFNDIHEVP----DGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR 74
           L  + L  N I E+P    +GL    LQ L L  N +  +    FQ + +L +L L   +
Sbjct: 82  LNSLVLYGNKITELPKSLFEGL--FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139

Query: 75  MVS-PPSSLSFLSNLRTLRLD 94
           + +    + S L  ++T+ L 
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLA 160

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 16/188 (8%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI 73
                L  + +  N +  +P+      L+ +    N L ++P+        L+VL +   
Sbjct: 117 ELPASLKHLDVDNNQLTMLPELP--ALLEYINADNNQLTMLPE----LPTSLEVLSVRNN 170

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLE----ILDLSKSDVNEIPVSF 128
           ++   P       +L  L +   N L  L ++       E         ++ +  IP + 
Sbjct: 171 QLTFLPELPE---SLEALDVST-NLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226

Query: 129 GRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIEL 188
             L     + L D   L       LS+     + +    +       +            
Sbjct: 227 LSLDPTCTIILED-NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

Query: 189 GALSRLTS 196
                   
Sbjct: 286 AWFPENKQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 21/147 (14%)

Query: 22  ISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81
           IS  + D     D  E  K       +N  + +       +     L L  + + S P +
Sbjct: 22  ISGTYADYFSAWDKWE--KQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDN 77

Query: 82  LSFLSNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDL 139
           L     +  L +       LP+       + LE LD   + ++ +P     L HL + + 
Sbjct: 78  L--PPQITVLEITQNALISLPE-----LPASLEYLDACDNRLSTLPELPASLKHLDVDNN 130

Query: 140 TDCYNLELIPPGVLSRLRKLEELYMSH 166
                L ++P         LE +   +
Sbjct: 131 ----QLTMLPEL----PALLEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 16/122 (13%)

Query: 49  NHLLVIPDPFFQGMKDLKVLDLGG---IRMVSPPSSLSFLSNLRTLRLDYCNHLPDL-SL 104
           N +      +F      +   L G      VS       ++    L+L+   +L  L   
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNR-LNLSSLPDN 77

Query: 105 IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164
           +     + +L+++++ +  +P     L +L   D      L  +P         L+ L +
Sbjct: 78  LP--PQITVLEITQNALISLPELPASLEYLDACDN----RLSTLPE----LPASLKHLDV 127

Query: 165 SH 166
            +
Sbjct: 128 DN 129

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 25/199 (12%)

Query: 7   LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLK 66
           + D  + N    +  I    +DI  V      P ++ L L  N L  I     + + +L 
Sbjct: 31  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLT 88

Query: 67  VLDLGGIRMVS-PPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNE 123
            L L G ++ S P      L+NL+ L L   N L  L   +  +L+ L  L+L+ + +  
Sbjct: 89  YLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147

Query: 124 IPVS-FGRLSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRS 181
           +P   F +L++L  LDL   YN L+ +P GV  +L +L++L +  +    Q +S      
Sbjct: 148 LPKGVFDKLTNLTELDL--SYNQLQSLPEGVFDKLTQLKDLRLYQN----QLKS------ 195

Query: 182 NAKFIELGALSRLTSL-HI 199
               +  G   RLTSL +I
Sbjct: 196 ----VPDGVFDRLTSLQYI 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVP--DGLECPKLQALFLQKNHLLVIPDPFFQGMK 63
           ++K    I    ++  ++L  N +H++     L    L  L L  N L  +P+  F  + 
Sbjct: 52  DIKSVQGIQYLPNVRYLALGGNKLHDISALKEL--TNLTYLILTGNQLQSLPNGVFDKLT 109

Query: 64  DLKVLDLGGIRMVS-PPSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSD 120
           +LK L L   ++ S P      L+NL  L L + N L  L   +  +L+ L  LDLS + 
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQ 168

Query: 121 VNEIPVS-FGRLSHLRLLDLTDCYN-LELIPPGVLSRLRKLEELY 163
           +  +P   F +L+ L+ L L    N L+ +P GV  RL  L+ ++
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRLTSLQYIW 211

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 14/154 (9%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS 77
           +    +L    + +     E   +  +    + +  +     Q + +++ L LGG ++  
Sbjct: 20  ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 78  PPSSLSF--LSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS-FGRLS 132
             +      L+NL  L L   N L  L   +  +L+ L+ L L ++ +  +P   F +L+
Sbjct: 78  ISA---LKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133

Query: 133 HLRLLDLTDCYN-LELIPPGVLSRLRKLEELYMS 165
           +L  L+L   +N L+ +P GV  +L  L EL +S
Sbjct: 134 NLTYLNLA--HNQLQSLPKGVFDKLTNLTELDLS 165

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.5 bits (140), Expect = 4e-09
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 52/195 (26%)

Query: 11  PSINTFEDLTGISLMFNDIH-EVPDGL-ECPKLQALFLQKNHLL-VIPDPFFQ------- 60
             ++  + L  +   +N +   +P  +   P L  +    N +   IPD +         
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 61  ----------------GMKDLKVLDL------GGIRMVSPPSSLSFLSNLRTLRLDYCNH 98
                              +L  +DL      G               N + + L   N 
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA-----SVLFGSDKNTQKIHLAK-NS 232

Query: 99  LP-DLSLIGELSGLEILDLSKSDVN----EIPVSFGRLSHLRLLDLTDCYN-LE-LIPPG 151
           L  DL  +G    L  LDL     N     +P    +L  L  L+++  +N L   IP G
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRN---NRIYGTLPQGLTQLKFLHSLNVS--FNNLCGEIPQG 287

Query: 152 VLSRLRKLEELYMSH 166
               L++ +    ++
Sbjct: 288 --GNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 7e-09
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 38  CPKLQALFLQKNHL---LVIPDPFFQGMKDLKVLDLGGIRMVS--PPSSLSFLSNLRTLR 92
             ++  L L   +L     IP      +  L  L +GGI  +    P +++ L+ L  L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 93  LDYCN---HLPDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLE-L 147
           + + N    +P    + ++  L  LD S + ++  +P S   L +L  +       +   
Sbjct: 108 ITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGA 164

Query: 148 IPPGVLSRLRKLEELYMSH 166
           IP    S  +    + +S 
Sbjct: 165 IPDSYGSFSKLFTSMTISR 183

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 79  PSSLSFLSNLRTLRLDYCN-----HLPDLSLIGELSGLEILDLSKSDVN----EIPVSFG 129
             + +    +  L L   N      +P  S +  L  L  L +    +N     IP +  
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIG--GINNLVGPIPPAIA 98

Query: 130 RLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSH 166
           +L+ L  L +T   N+   IP   LS+++ L  L  S+
Sbjct: 99  KLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSY 134

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 9   DWPSINTFEDLTGISL--MFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLK 66
             P +N   +L  +S       + E+   L+ P L+ L + + H L       +    L 
Sbjct: 119 TGPDLNIL-NLRNVSWATRDAWLAELQQWLK-PGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 67  VLDLGGIRMVSPPSSLSF-----LSNLRTLRLDYCNHLPDLS-----LIGELSGLEILDL 116
            LDL     +     +S         L+ L L     +   S     L      L+ LDL
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDL 235

Query: 117 SKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
           S + + +     S    S L  L+L+    L+ +P G+ +   KL  L +S+
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPA---KLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 17/165 (10%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL--LVIPDPFFQGMKDLKVLDLGGIRM 75
            +    +    +      L    LQ L L+   +     P        DL +L+L  +  
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 76  VSPPSSLSFLSN-----LRTLRLDYCNHLPDLS--LIGELSGLEILDLSK---SDVNEIP 125
            +  + L+ L       L+ L +    H  + S   +     L  LDLS         + 
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 126 VSF--GRLSHLRLLDLTDCY--NLELIPPGVLSRLRKLEELYMSH 166
            +    +   L++L L +        +   + +   +L+ L +SH
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 32/110 (29%), Gaps = 9/110 (8%)

Query: 14  NTFEDLTGISLMFNDIHEVPDGLE-----CPKLQALFLQKNHLLVIPDP-FFQGMKDLKV 67
             F  L  ++L    +               +LQ L L  N L              L  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 68  LDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLS 117
           L+L    +   P  L   + L  L L Y N L       EL  +  L L 
Sbjct: 258 LNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLK 304

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 31/152 (20%)

Query: 18  DLTGISLMFNDIHEVP-----DGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG 72
               + L  N+   +        L  P+L+ +    N +  I +  F+G   +  + L  
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKL--PQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 73  IRMVS-PPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRL 131
            R+ +        L +L+TL L   N +  +                        SF  L
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRS-NRITCVG---------------------NDSFIGL 128

Query: 132 SHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163
           S +RLL L D   +  + PG    L  L  L 
Sbjct: 129 SSVRLLSLYDN-QITTVAPGAFDTLHSLSTLN 159

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 86  SNLRTLRLDYCNHLPDLSLIG---ELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTD 141
                LRL+  N    L   G   +L  L  ++ S + + +I   +F   S +  + LT 
Sbjct: 32  QYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT- 89

Query: 142 CYN-LELIPPGVLSRLRKLEELYMSH 166
             N LE +   +   L  L+ L +  
Sbjct: 90  -SNRLENVQHKMFKGLESLKTLMLRS 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV-SFGR 130
             +     L    NL  L ++   HL  L    +  L  L  L + KS +  +   +F  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 131 LSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166
              L  L+L+    LE +    +  L  L+EL +S 
Sbjct: 79  TPRLSRLNLSFN-ALESLSWKTVQGL-SLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 14/89 (15%)

Query: 109 SGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF 168
            G   L  ++    +         +L  L + +  +L+ +    L  L +L  L +    
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-- 65

Query: 169 CHWQFESEEDTRSNAKFIELGALSRLTSL 197
                       S  +F+   A      L
Sbjct: 66  ------------SGLRFVAPDAFHFTPRL 82

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 11  PSINTFEDLTGISLMFN-DIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKV 67
             +   E+LT + +     +  +         +L+ L + K+ L  +    F     L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 68  LDLGGIRMVSPPSSLSFLSNLRTLRLD 94
           L+L    + S         +L+ L L 
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLS 111

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 8e-08
 Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 8/138 (5%)

Query: 38  CPKLQALFLQKNHLLVIPDP----FFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRL 93
              L+ L         I         +  + L  + +G   ++         +NL     
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 94  DYCNHLPDLSL----IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP 149
              N    +      +     L  L LS    NE+P+ F   + +R LDL          
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 150 PGVLSRLRKLEELYMSHS 167
             ++ +   LE L   + 
Sbjct: 311 CTLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 74/492 (15%), Positives = 154/492 (31%), Gaps = 73/492 (14%)

Query: 66  KVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGE----------------LS 109
           + + +      +P        NLR+L+L         +LI E                L 
Sbjct: 53  EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112

Query: 110 GLEILDLSK---SDVNEIPVSFGRLSHLRLLDLTDCYNL-ELIPPGVLSRLRKLEELYMS 165
            L+ +   +   SD++   ++  R   L  L L  C          +++  RK++ L M 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 166 HSFCHWQFESEEDTRSNAKFIELGA-LSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG 224
            S            +      EL    + L  L+  + +   + S   L  +     ++ 
Sbjct: 173 ESSFS--------EKDGKWLHELAQHNTSLEVLNFYMTEFAKI-SPKDLETIARNCRSL- 222

Query: 225 EEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENI 284
               + DF  L L  F K  +      ++    +L+  I        ++   ++  L   
Sbjct: 223 VSVKVGDFEILELVGFFKAAAN----LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL--- 275

Query: 285 FSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQL 344
              L+    NE+  L+ F   +++ L   L      T                       
Sbjct: 276 --GLSYMGPNEMPILFPF-AAQIRKL--DLLYALLETEDHCT------------------ 312

Query: 345 PAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEE 404
                 N++ L+         +    L Q  + L+RL +E       + + E +   +  
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370

Query: 405 TELFSSLEKLTLIDL--PRMTDIWKGDTQFVS-LHNLKKVRVEECDELRQVFPANLGKKA 461
             L    ++L  + +    +T+  +      + L NL   R+   D   ++    L    
Sbjct: 371 IALAQGCQELEYMAVYVSDITN--ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428

Query: 462 AAEEMVLYRNRRYQIHIHATTSTSSPTPSLG----NLVSITIRGCGKLRNLFTTSMVKSL 517
            +  +   + RR+  ++     T      +G    N+  + +   G   +       +  
Sbjct: 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGC 487

Query: 518 VRLESLEVSSCP 529
             L+ LE+  C 
Sbjct: 488 PNLQKLEMRGCC 499

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 23  SLMFNDIHEVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPP 79
             M   I ++   L      + L L  N++  I      GM++L++L LG   I+ +   
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL 88

Query: 80  SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSK---SDVNEIPVSFGRLSHLRL 136
            ++     L  L + Y N +  LS I +L  L +L +S    ++  EI      L  L  
Sbjct: 89  DAV--ADTLEELWISY-NQIASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLED 144

Query: 137 LDL-----TDCYNLELIPPG----VLSRLRKLEEL 162
           L L      + Y            V+ RL  L++L
Sbjct: 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 80  SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDL 139
           ++LS L   + L L   N++  +S +  +  L IL L ++ + +I         L  L +
Sbjct: 42  ATLSTLKACKHLALS-TNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

Query: 140 TDCYNLELIPPGVLSRLRKLEELYMSH 166
           +    +  +    + +L  L  LYMS+
Sbjct: 101 SYN-QIASLSG--IEKLVNLRVLYMSN 124

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 15  TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG-- 72
            F +L  +SL+   +  V +  + PKL+ L L +N +    D   + + +L  L+L G  
Sbjct: 47  EFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 73  IRMVSPPSSLSFLSNLRTLRLDY--CNHLPD--LSLIGELSGLEILDLSKSDVNEIP 125
           ++ +S    L  L  L++L L      +L D   S+   L  L  LD    +  E P
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 42  QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF--LSNLRTLRLDYCNHL 99
           Q L+L  N +  +    F  + +LK L LG  ++ + P  + F  L+ L  L L   N L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGT-NQL 100

Query: 100 PDLS--LIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157
             L   +   L  L+ L +  + + E+P    RL+HL  L L     L+ IP G   RL 
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLS 159

Query: 158 KLEELY 163
            L   Y
Sbjct: 160 SLTHAY 165

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 74  RMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSH 133
            ++         +++R L L +   L  L  + +L  +  LDLS + +  +P +   L  
Sbjct: 429 FLLENSVLKMEYADVRVLHLAH-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487

Query: 134 LRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR 193
           L +L  +D   LE +    ++ L +L+EL + ++    + +             L +  R
Sbjct: 488 LEVLQASDN-ALENVDG--VANLPRLQELLLCNN----RLQQSAA------IQPLVSCPR 534

Query: 194 LTSLHI 199
           L  L++
Sbjct: 535 LVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 8   KDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKV 67
           ++      + D+  + L   D+  +    +   +  L L  N L  +P P    ++ L+V
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEV 490

Query: 68  LDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSG---LEILDLS----KSD 120
           L      + +    ++ L  L+ L L   N L   + I  L     L +L+L       +
Sbjct: 491 LQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 121 VNEIPVSFGRLSHLRLLD 138
                     L  +  + 
Sbjct: 549 EGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLE-CPKLQALFLQKNHLLVIPDPFFQGMKD 64
           +L     +     +T + L  N +  +P  L     L+ L    N L  +       +  
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPR 509

Query: 65  LKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDL-----SLIGELSGLEILD 115
           L+ L L    ++  +    L     L  L L   N L         L   L  +  + 
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 8/152 (5%)

Query: 18  DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM 75
           D   + L    +  + D       KL  L L  N L  +    F  + +L  L L   ++
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95

Query: 76  VS-PPSSLSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS-FGRL 131
            S P      L+ L  L L   N L  L   +   L+ L+ L L+ + +  IP   F +L
Sbjct: 96  ASLPLGVFDHLTQLDKLYL-GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 132 SHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163
           ++L+ L L+    L+ +P G   RL KL+ + 
Sbjct: 155 TNLQTLSLST-NQLQSVPHGAFDRLGKLQTIT 185

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 26/126 (20%)

Query: 42  QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLRLDYCNHLP 100
           + L LQ   L  + D  F+G+  L  L+L   ++ +        L+ L TL L   N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLA 96

Query: 101 DLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN-LELIPPGVLSRLRKL 159
            L       G+                F  L+ L  L L    N L+ +P GV  RL KL
Sbjct: 97  SLP-----LGV----------------FDHLTQLDKLYL--GGNQLKSLPSGVFDRLTKL 133

Query: 160 EELYMS 165
           +EL ++
Sbjct: 134 KELRLN 139

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 13/135 (9%)

Query: 19  LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
           LT ++L +N +  +  G+  +  +L  L L  N L  +P   F  +  L  L LGG ++ 
Sbjct: 61  LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120

Query: 77  SPPSSLSF--LSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV-SFGRL 131
           S PS + F  L+ L+ LRL+  N L  +      +L+ L+ L LS + +  +P  +F RL
Sbjct: 121 SLPSGV-FDRLTKLKELRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178

Query: 132 SHLRLLDLT----DC 142
             L+ + L     DC
Sbjct: 179 GKLQTITLFGNQFDC 193

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 23/192 (11%)

Query: 38  CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS---SLSFLSNLRTLRLD 94
           C KLQ L L+   L            +L  L+L G    S  +    LS  S L  L L 
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 95  YCNHLPDLSLIGELS----GLEILDLSK--SDVNEIPVS--FGRLSHLRLLDLTDCYNLE 146
           +C    +  +   ++     +  L+LS    ++ +  +S    R  +L  LDL+D   L+
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

Query: 147 LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHID--IPKG 204
                   +L  L+ L +S   C+               +ELG +  L +L +   +P G
Sbjct: 237 NDCFQEFFQLNYLQHLSLSR--CYDI--------IPETLLELGEIPTLKTLQVFGIVPDG 286

Query: 205 EIMPSDMSLPNL 216
            +     +LP+L
Sbjct: 287 TLQLLKEALPHL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 38  CPKLQALFLQKNHLLVIPDP---FFQGMKDLKVLDLGGIRMVSPPS--SLSFLSNLRTLR 92
              +  L L      +         +   +L  LDL    M+          L+ L+ L 
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253

Query: 93  LDYCNHLPDLSL--IGELSGLEILDLSK-SDVNEIPVSFGRLSHLRLLDLTDCYNLELIP 149
           L  C  +   +L  +GE+  L+ L +        + +    L HL++    +C +   I 
Sbjct: 254 LSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI----NCSHFTTIA 309

Query: 150 PGVLSRLR 157
              +   +
Sbjct: 310 RPTIGNKK 317

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 42  QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLRLDYCNHLP 100
             L L+ N L  +P+  F  +  L  L LGG ++ S P    + L++L  L L   N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL-STNQLQ 89

Query: 101 DL--SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYN-LELIPPGVLSRL 156
            L   +  +L+ L+ L L+ + +  +P   F +L+ L+ L L    N L+ +P GV  RL
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRL 147

Query: 157 RKLEELY 163
             L+ ++
Sbjct: 148 TSLQYIW 154

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 13  INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG 72
            + FE+L  +S +   +  + +  +  KL+ L L  N +    +   +   +L  L+L G
Sbjct: 38  TDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 73  --IRMVSPPSSLSFLSNLRTLRLDY--CNHLPD--LSLIGELSGLEILD 115
             I+ +S    L  L NL++L L      +L D   ++   L  L  LD
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 85  LSNLRTLRLDYC--NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDC 142
            S+++ L LD    N      L  E   LE L      +  I     +L+ L+ L+L+D 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDN 74

Query: 143 YNLELIPPGVLSRLRKLEELYMSH 166
             +      +  +   L  L +S 
Sbjct: 75  -RVSGGLEVLAEKCPNLTHLNLSG 97

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 15  TFEDLTGISLMFNDIHEVPDGLEC-PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG- 72
           T +    I    N+I ++ DG     +L+ L +  N +  I +   Q + DL  L L   
Sbjct: 40  TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 73  -IRMVSPPSSLSFLSNLRTLRLDY--CNHLPD--LSLIGELSGLEILDLSKSDVNEI 124
            +  +     L+ L +L  L +      +     L +I ++  + +LD  K  + E 
Sbjct: 99  SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 12/140 (8%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPD-GLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
                      + L    I  + + G    +  A+    N +  +    F  ++ LK L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLL 70

Query: 70  LGGIRMVS-PPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSG---LEILDLSKSDVNEIP 125
           +   R+          L +L  L L   N L +L  +  L+    L  L + ++ V    
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

Query: 126 ----VSFGRLSHLRLLDLTD 141
                   ++  +R+LD   
Sbjct: 130 HYRLYVIYKVPQVRVLDFQK 149

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 6e-05
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 26/169 (15%)

Query: 11  PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL--LVIPDPFFQGMKDLKVL 68
           P ++    L  + +   +   +      P L++L +    L   V+ D     + +L+ L
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIG-KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 69  DL----------GGIRMVSPPSSLSFLSNLRTLRLDYCNHLPD----LSLIGELSGLEIL 114
            L          G + +  P  S     NL+ L +                  L  LE +
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284

Query: 115 DLSK-----SDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK 158
           D+S           +     ++ HL+ +++   Y    +   +   L+K
Sbjct: 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY----LSDEMKKELQK 329

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 38  CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFL----SNLRTLR- 92
           CP L++L L +   L       Q    L+ L  GG      P   S L    S  + LR 
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 93  LDYCNHLPDLSLI---GELSGLEILDLSKSDV--NEIPVSFGRLSHLRLLDLTDCYNLEL 147
           L          L       S L  L+LS + V   ++     +   L+ L + D      
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG 329

Query: 148 IPPGVLSRLRKLEELYMSHS 167
           +   + S  + L EL +  S
Sbjct: 330 LEV-LASTCKDLRELRVFPS 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	657
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.58
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.45
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.98
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.54
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.38
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.14
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.6
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.33

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-41  Score=383.29  Aligned_cols=575  Identities=17%  Similarity=0.097  Sum_probs=348.9

Q ss_pred             CCCCCCCccEEEccCCCcc-ccCC--CC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCC-CCcc---c
Q 006185           12 SINTFEDLTGISLMFNDIH-EVPD--GL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVS-PPSS---L   82 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~---~   82 (657)
                      .+..+++|++|++++|.++ .+|.  .+ .+++|++|++++|.+. .+|..++.++++|++|++++|.++. .|..   +
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  174 (768)
T 3rgz_A           95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS  174 (768)
T ss_dssp             CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred             hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence            6888999999999999987 5665  44 8899999999999877 5565555788999999999998864 3344   6


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                      .++++|++|++++|. +.....++++++|++|++++|.++..+..++++++|++|++++|...+.+|.. ++++++|++|
T Consensus       175 ~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L  252 (768)
T 3rgz_A          175 DGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL  252 (768)
T ss_dssp             TCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEE
T ss_pred             ccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEE
Confidence            788888888888887 33333447788888888888887754444888888888888886544455554 7788888888


Q ss_pred             EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC-CC-CCCccEEEEEEcCcc-Chhh-------
Q 006185          163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD-MS-LPNLTSFSITIGEED-TLND-------  231 (657)
Q Consensus       163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~-l~~L~~L~l~~~~~~-~~~~-------  231 (657)
                      ++++|.+..           ..+.  ..+++|++|++++|.+. .+|.. .. +++|+.|++.++... ..+.       
T Consensus       253 ~Ls~n~l~~-----------~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          253 NISSNQFVG-----------PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             ECCSSCCEE-----------SCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             ECCCCcccC-----------ccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            888775432           1111  14445555555555442 33333 11 244555544433210 0000       


Q ss_pred             ----------HHHHHhhc-c-cccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEE
Q 006185          232 ----------FIELFLEN-F-NKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFL  299 (657)
Q Consensus       232 ----------~~~~~~~~-~-~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L  299 (657)
                                +.+.++.. + ..+.++.++++++.-...+|.++....++|+.|+++++.-....++.+....+++|++|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence                      11111111 1 22555666666553333455555554236666666655322222223222235667777


Q ss_pred             EeecCCCceEEeeccccccccccccccEEeccccccccccccccCC--CCCCCCccEEEEecCCCcccccchhHHHhccc
Q 006185          300 YIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLP--AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQN  377 (657)
Q Consensus       300 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~  377 (657)
                      ++++| .+......    ....+++|+.|++++|. +    .+..|  .+.+++|+.|++++|. +.+..|..+ ..+++
T Consensus       400 ~L~~n-~l~~~~p~----~l~~l~~L~~L~Ls~N~-l----~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~  467 (768)
T 3rgz_A          400 YLQNN-GFTGKIPP----TLSNCSELVSLHLSFNY-L----SGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQEL-MYVKT  467 (768)
T ss_dssp             ECCSS-EEEEECCG----GGGGCTTCCEEECCSSE-E----ESCCCGGGGGCTTCCEEECCSSC-CCSCCCGGG-GGCTT
T ss_pred             ECCCC-ccccccCH----HHhcCCCCCEEECcCCc-c----cCcccHHHhcCCCCCEEECCCCc-ccCcCCHHH-cCCCC
Confidence            77777 33322211    23357788888888775 2    22233  2367788888888864 443355544 56788


Q ss_pred             CcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCccccccccccc
Q 006185          378 LQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANL  457 (657)
Q Consensus       378 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l  457 (657)
                      |++|+++++.-...+         |..+..+++|+.|++++|.--..+   +.....+++|++|++++|. ++...|..+
T Consensus       468 L~~L~L~~N~l~~~~---------p~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~-l~~~~p~~l  534 (768)
T 3rgz_A          468 LETLILDFNDLTGEI---------PSGLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNNS-FSGNIPAEL  534 (768)
T ss_dssp             CCEEECCSSCCCSCC---------CGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSC-CEEECCGGG
T ss_pred             ceEEEecCCcccCcC---------CHHHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCCc-ccCcCCHHH
Confidence            888888875432222         556677888888888887533233   2334557888888888874 444457778


Q ss_pred             ccccchhhhhhhccccccee------------------------------------------------------------
Q 006185          458 GKKAAAEEMVLYRNRRYQIH------------------------------------------------------------  477 (657)
Q Consensus       458 ~~~~~L~~l~l~~~~~l~~~------------------------------------------------------------  477 (657)
                      +.+++|+.|+++++.-....                                                            
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            88888888887765321000                                                            


Q ss_pred             ---ecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEec
Q 006185          478 ---IHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITF  554 (657)
Q Consensus       478 ---~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~  554 (657)
                         ..+....+..+..+++|+.|+++++. ++...|.. ++.+++|+.|+++++.--..+|             .....+
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip-------------~~l~~L  679 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGYIPKE-IGSMPYLFILNLGHNDISGSIP-------------DEVGDL  679 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSCCCGG-GGGCTTCCEEECCSSCCCSCCC-------------GGGGGC
T ss_pred             cccceecccCchhhhccccccEEECcCCc-ccccCCHH-HhccccCCEEeCcCCccCCCCC-------------hHHhCC
Confidence               00111224456667889999998875 44333433 5788999999999886433443             223357


Q ss_pred             cccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccceeeccCchhHHHHHHH
Q 006185          555 PSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYV  634 (657)
Q Consensus       555 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~l~~~~l~~~l~~~~  634 (657)
                      ++|+.|+++++.--..+| ..+.   .+++|++|++++++--..+|.+..  ..++....+.++|.+-...+    ..|.
T Consensus       680 ~~L~~LdLs~N~l~g~ip-~~l~---~l~~L~~L~ls~N~l~g~iP~~~~--~~~~~~~~~~gN~~Lcg~~l----~~C~  749 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIP-QAMS---ALTMLTEIDLSNNNLSGPIPEMGQ--FETFPPAKFLNNPGLCGYPL----PRCD  749 (768)
T ss_dssp             TTCCEEECCSSCCEECCC-GGGG---GCCCCSEEECCSSEEEEECCSSSS--GGGSCGGGGCSCTEEESTTS----CCCC
T ss_pred             CCCCEEECCCCcccCcCC-hHHh---CCCCCCEEECcCCcccccCCCchh--hccCCHHHhcCCchhcCCCC----cCCC
Confidence            899999999975444667 6665   678999999999866666886652  35566677778886643222    2688


Q ss_pred             HhhhhhhHHHhhhcCCC
Q 006185          635 YNEKKIWEKQAMKSGIS  651 (657)
Q Consensus       635 ~~~~~~~~~i~~ip~v~  651 (657)
                      ...+++|++|+|+|.+.
T Consensus       750 ~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          750 PSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             SCC--------------
T ss_pred             CCccCCCCCCCCccccC
Confidence            88899999999999764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4e-40  Score=370.98  Aligned_cols=465  Identities=18%  Similarity=0.109  Sum_probs=331.6

Q ss_pred             CCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCc-CCCc-hhhcCCCCccEEEecCCcCC-CCCccc-cCCC
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLL-VIPD-PFFQGMKDLKVLDLGGIRMV-SPPSSL-SFLS   86 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~~~~-~~~~~l~~Lr~L~L~~~~~~-~lp~~~-~~l~   86 (657)
                      ++..+++|+.++++.+.+..+|..+ .+++|++|++++|.+. .+|. ..|+++++|++|++++|.+. ..|..+ .+++
T Consensus        72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  151 (768)
T 3rgz_A           72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN  151 (768)
T ss_dssp             HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred             hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence            5778899999999999988887777 8999999999999988 4555 13699999999999999885 566655 8999


Q ss_pred             CCcEEEccCCCCCCC-Ccc---cCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           87 NLRTLRLDYCNHLPD-LSL---IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        87 ~L~~L~l~~~~~~~~-~~~---~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                      +|++|++++|..... +..   ++++++|++|++++|.++.... +.++++|++|++++|...+.+|.  ++++++|++|
T Consensus       152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L  228 (768)
T 3rgz_A          152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHL  228 (768)
T ss_dssp             TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEE
T ss_pred             CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEE
Confidence            999999999994433 333   8899999999999998875433 48999999999999766555665  8999999999


Q ss_pred             EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccc-
Q 006185          163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFN-  241 (657)
Q Consensus       163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-  241 (657)
                      ++++|.+..           ..+..++.+++|+.|++++|..........+++|+.|++.++.      +.+.+++.+. 
T Consensus       229 ~Ls~n~l~~-----------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~------l~~~ip~~~~~  291 (768)
T 3rgz_A          229 DISGNKLSG-----------DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK------FTGEIPDFLSG  291 (768)
T ss_dssp             ECCSSCCCS-----------CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSE------EEESCCCCSCT
T ss_pred             ECcCCcCCC-----------cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCc------cCCccCHHHHh
Confidence            999997642           5678899999999999999998543333488999999998763      2223333332 


Q ss_pred             -ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCce-EEeeccccccc
Q 006185          242 -KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMK-CLLNSLERTQR  319 (657)
Q Consensus       242 -~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~  319 (657)
                       .+.++.++++++.-...+|.++... ++|+.|+++++.- ....|......+++|++|++++| .+. .++..     .
T Consensus       292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l-~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~-----l  363 (768)
T 3rgz_A          292 ACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFN-EFSGELPES-----L  363 (768)
T ss_dssp             TCTTCSEEECCSSEEEECCCGGGGGC-TTCCEEECCSSEE-EEECCHHHHTTCTTCCEEECCSS-EEEECCCTT-----H
T ss_pred             hcCcCCEEECcCCcCCCccchHHhcC-CCccEEECCCCcc-cCcCCHHHHhcCCCCCEEeCcCC-ccCccccHH-----H
Confidence             2789999999885544566666554 8999999988843 32222211235889999999998 443 22222     2


Q ss_pred             cccc-cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccc
Q 006185          320 VTLR-KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERV  398 (657)
Q Consensus       320 ~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  398 (657)
                      ..++ +|+.|+++++. ++...........+++|++|++++|. +++..|..+ ..+++|++|+++++.--..+      
T Consensus       364 ~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~------  434 (768)
T 3rgz_A          364 TNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNG-FTGKIPPTL-SNCSELVSLHLSFNYLSGTI------  434 (768)
T ss_dssp             HHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSE-EEEECCGGG-GGCTTCCEEECCSSEEESCC------
T ss_pred             HhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCc-cccccCHHH-hcCCCCCEEECcCCcccCcc------
Confidence            2344 89999998885 22111111111136788999998864 444456554 67888889988886322222      


Q ss_pred             cccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceee
Q 006185          399 NIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHI  478 (657)
Q Consensus       399 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~  478 (657)
                         |..+..+++|+.|++++|.--..+   +.....+++|++|++++| +++...|..++.+++|+.|+++++       
T Consensus       435 ---p~~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-------  500 (768)
T 3rgz_A          435 ---PSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-------  500 (768)
T ss_dssp             ---CGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-------
T ss_pred             ---cHHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-------
Confidence               556677888888888887533232   233445778888888886 445455777888888888888774       


Q ss_pred             cccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCC
Q 006185          479 HATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCP  529 (657)
Q Consensus       479 ~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  529 (657)
                      .+....|..+..+++|+.|++++|.-...+ +.. +..+++|+.|++++|+
T Consensus       501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~-l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          501 RLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAE-LGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEEEC-CGG-GGGCTTCCEEECCSSE
T ss_pred             ccCCcCChHHhcCCCCCEEECCCCcccCcC-CHH-HcCCCCCCEEECCCCc
Confidence            233334555667778888888777533333 332 4677778888877765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-38  Score=351.16  Aligned_cols=521  Identities=19%  Similarity=0.149  Sum_probs=305.3

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-Cc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PS   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~   80 (657)
                      +.+++.+|. ...+++++|++++|.++.++...  ++++|++|++++|.+..+++..|.++++|++|++++|.++.+ |.
T Consensus        20 ~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~   98 (606)
T 3vq2_A           20 DQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG   98 (606)
T ss_dssp             TSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred             CCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence            345566663 12366677777777666655422  666777777777666666555566677777777777666654 56


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      .|+++++|++|++++|.....+ ..++++++|++|++++|.++  .+|..++++++|++|++++| .++.++...++.+.
T Consensus        99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~  177 (606)
T 3vq2_A           99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLR  177 (606)
T ss_dssp             SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHH
T ss_pred             hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhh
Confidence            6666777777777766644433 55666777777777776665  35666667777777777663 34444333355555


Q ss_pred             cCc----EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc--cCCCC-CCCCCccEEEEEEcCccChh
Q 006185          158 KLE----ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE--IMPSD-MSLPNLTSFSITIGEEDTLN  230 (657)
Q Consensus       158 ~L~----~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~l~~L~~L~l~~~~~~~~~  230 (657)
                      +|+    +|++++|.+.            ..+.......+|+.|++++|...  .++.. ..+++|+.+.+.........
T Consensus       178 ~L~~~l~~L~l~~n~l~------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPID------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             HCTTCCCEEECTTCCCC------------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             ccccccceeeccCCCcc------------eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            443    5666666543            22222223336666666666542  11111 34555555555432111000


Q ss_pred             ---hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCc
Q 006185          231 ---DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEM  307 (657)
Q Consensus       231 ---~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l  307 (657)
                         .+....++.+..                         -.++.+.+.....+....+.+  ..+++|+.|++.++ .+
T Consensus       246 ~l~~~~~~~~~~l~~-------------------------l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~~  297 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCD-------------------------VTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGV-SI  297 (606)
T ss_dssp             CCSCCCGGGGTTGGG-------------------------SEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESC-CC
T ss_pred             cccccChHHhhhhhh-------------------------ccHhheecccccccccccccc--ccCCCCCEEEecCc-cc
Confidence               000000111110                         245555555555555555542  34777777777777 44


Q ss_pred             eEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185          308 KCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE  387 (657)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~  387 (657)
                      ..++ .     ...+++|++|++++|.- +     .+|.-.+++|++|++++|..+... +.   ..+++|++|+++++.
T Consensus       298 ~~l~-~-----l~~~~~L~~L~l~~n~l-~-----~lp~~~l~~L~~L~l~~n~~~~~~-~~---~~l~~L~~L~ls~n~  361 (606)
T 3vq2_A          298 KYLE-D-----VPKHFKWQSLSIIRCQL-K-----QFPTLDLPFLKSLTLTMNKGSISF-KK---VALPSLSYLDLSRNA  361 (606)
T ss_dssp             CCCC-C-----CCTTCCCSEEEEESCCC-S-----SCCCCCCSSCCEEEEESCSSCEEC-CC---CCCTTCCEEECCSSC
T ss_pred             hhhh-h-----ccccccCCEEEcccccC-c-----ccccCCCCccceeeccCCcCccch-hh---ccCCCCCEEECcCCc
Confidence            4443 1     22367777777777752 2     222226777777777777555442 21   356777777777752


Q ss_pred             cceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccc-cccccccchhhh
Q 006185          388 LLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFP-ANLGKKAAAEEM  466 (657)
Q Consensus       388 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~-~~l~~~~~L~~l  466 (657)
                       ++.+..      .+..+..+++|+.|++++|. ++.++   .....+++|++|++++|. +....| ..+..+++|++|
T Consensus       362 -l~~~~~------~~~~~~~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          362 -LSFSGC------CSYSDLGTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             -EEEEEE------CCHHHHCCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEE
T ss_pred             -cCCCcc------hhhhhccCCcccEeECCCCc-cccch---hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEE
Confidence             222210      02344567777777777764 55443   234456777778777764 344434 567777777777


Q ss_pred             hhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccC
Q 006185          467 VLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQG  546 (657)
Q Consensus       467 ~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~  546 (657)
                      +++++.       +....+..+..+++|++|++++|.--....+ ..+..+++|++|++++|. ++.++.          
T Consensus       430 ~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~----------  490 (606)
T 3vq2_A          430 DISYTN-------TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQISW----------  490 (606)
T ss_dssp             ECTTSC-------CEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECT----------
T ss_pred             ECcCCC-------CCccchhhhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCc-CCccCh----------
Confidence            777642       2223355667788888888888753322222 234678888888888884 444421          


Q ss_pred             CCcceEeccccCeeEcCcCCCcccc-ccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccceee
Q 006185          547 ASTKKITFPSLFSIKLCDLGSLTCF-SSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYC  621 (657)
Q Consensus       547 ~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~l  621 (657)
                        .....+++|++|+++++ +++.+ | ....   .+++|++|++++|. ++.+|.....+|++|+.|+++++|..
T Consensus       491 --~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~---~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          491 --GVFDTLHRLQLLNMSHN-NLLFLDS-SHYN---QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCSCEEG-GGTT---TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             --hhhcccccCCEEECCCC-cCCCcCH-HHcc---CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence              11224788899999887 45555 4 5555   57889999998874 77888877777667889998887743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-36  Score=340.00  Aligned_cols=552  Identities=15%  Similarity=0.131  Sum_probs=303.5

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-   80 (657)
                      +.++.++|.- ..+++++|++++|.++.++...  ++++|++|++++|.+..+++..|+++++|++|++++|.++.+|. 
T Consensus        13 ~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~   91 (680)
T 1ziw_A           13 HLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK   91 (680)
T ss_dssp             SSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence            4567778742 2378999999999988887643  78899999999998887777778899999999999999888886 


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhh--cC
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLS--RL  156 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~--~l  156 (657)
                      .|+++++|++|++++|.....+ ..++++++|++|++++|.++.. |..++++++|++|++++| .++.++...+.  .+
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~  170 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFAN  170 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTT
T ss_pred             hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhcccc
Confidence            5889999999999998855544 6788999999999999988854 456888999999999985 45566554343  45


Q ss_pred             ccCcEEEcccCccccccccccccccccchhhhcCCCC---------------------------ccEEEeecCCCccCCC
Q 006185          157 RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR---------------------------LTSLHIDIPKGEIMPS  209 (657)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~---------------------------L~~L~l~~~~~~~~~~  209 (657)
                      ++|++|++++|.+..           ..+..++.+.+                           |+.|+++++.+..+..
T Consensus       171 ~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~  239 (680)
T 1ziw_A          171 SSLKKLELSSNQIKE-----------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN  239 (680)
T ss_dssp             CEESEEECTTCCCCC-----------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred             ccccEEECCCCcccc-----------cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence            889999998886542           22333444444                           4444444444332221


Q ss_pred             C--CCC--CCccEEEEEEcCccChhhHHHHHhhccc-ccCcceEEeecccchhhhHHHHHHHHccccEEEEeecccccc-
Q 006185          210 D--MSL--PNLTSFSITIGEEDTLNDFIELFLENFN-KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLEN-  283 (657)
Q Consensus       210 ~--~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~-  283 (657)
                      .  ..+  ++|+.|+++++.....      .+..+. .+.++.++++++.-....|.++.. +++|+.|++.++..-.. 
T Consensus       240 ~~~~~l~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~  312 (680)
T 1ziw_A          240 TTFLGLKWTNLTMLDLSYNNLNVV------GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSI  312 (680)
T ss_dssp             TTTGGGGGSCCCEEECTTSCCCEE------CTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC--
T ss_pred             hHhhccCcCCCCEEECCCCCcCcc------CcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhccc
Confidence            1  111  2255555443321110      011111 144444444444221111222222 14444444443210000 


Q ss_pred             ---ccc---cccccccccceEEEeecCCCceEEeeccccccccccccccEEecccccc-ccccccccCCCCCCCCccEEE
Q 006185          284 ---IFS---NLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQN-FVEICHGQLPAGCLSNVKRLD  356 (657)
Q Consensus       284 ---~~~---~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~  356 (657)
                         ..|   ......+++|++|++++| .+..++..    ....+++|+.|+++++.- +..+....+..-..++|+.|+
T Consensus       313 ~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~  387 (680)
T 1ziw_A          313 SLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN  387 (680)
T ss_dssp             ----CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred             ccccccccChhhcccCCCCCEEECCCC-ccCCCChh----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence               000   011123445555555544 22222111    122345555555554421 100000000000123455555


Q ss_pred             EecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccC
Q 006185          357 VVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLH  436 (657)
Q Consensus       357 l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~  436 (657)
                      +++| .+..+.|..+ ..+++|++|+++++.--..+.        +..+..+++|++|+++++. +..+.  ......++
T Consensus       388 L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~--------~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~~~  454 (680)
T 1ziw_A          388 LTKN-KISKIESDAF-SWLGHLEVLDLGLNEIGQELT--------GQEWRGLENIFEIYLSYNK-YLQLT--RNSFALVP  454 (680)
T ss_dssp             CTTS-CCCEECTTTT-TTCTTCCEEECCSSCCEEECC--------SGGGTTCTTCCEEECCSCS-EEECC--TTTTTTCT
T ss_pred             CCCC-CCCeEChhhh-hCCCCCCEEeCCCCcCccccC--------cccccCcccccEEecCCCC-cceeC--hhhhhcCc
Confidence            5553 2333333222 455566666665543221110        1234455666666666653 33322  11223456


Q ss_pred             CccEEEeccCccc-ccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceeccc----
Q 006185          437 NLKKVRVEECDEL-RQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTT----  511 (657)
Q Consensus       437 ~L~~L~i~~C~~L-~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~----  511 (657)
                      +|++|++.+|.-- ....|..+..+++|+.|+++++       .+....+..+..+++|+.|+++++. ++.+...    
T Consensus       455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-------~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  526 (680)
T 1ziw_A          455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-------NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPG  526 (680)
T ss_dssp             TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTT
T ss_pred             ccccchhccccccccccCCcccccCCCCCEEECCCC-------CCCcCChhhhccccccCEEeCCCCC-ccccchhhccC
Confidence            6666666665321 0223555666666666666653       2222223345566677777776653 4333111    


Q ss_pred             ---chhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeecccccee
Q 006185          512 ---SMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEAL  588 (657)
Q Consensus       512 ---~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L  588 (657)
                         ..+..+++|++|+++++. ++.++.            .....+++|+.|++++ .+++.++ .+.. . .+++|+.|
T Consensus       527 ~~~~~~~~l~~L~~L~L~~N~-l~~i~~------------~~~~~l~~L~~L~Ls~-N~l~~l~-~~~~-~-~l~~L~~L  589 (680)
T 1ziw_A          527 GPIYFLKGLSHLHILNLESNG-FDEIPV------------EVFKDLFELKIIDLGL-NNLNTLP-ASVF-N-NQVSLKSL  589 (680)
T ss_dssp             SCCCTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCS-SCCCCCC-TTTT-T-TCTTCCEE
T ss_pred             CcchhhcCCCCCCEEECCCCC-CCCCCH------------HHcccccCcceeECCC-CCCCcCC-HhHh-C-CCCCCCEE
Confidence               123556777777776653 444431            1122477888888877 4788887 4432 1 56889999


Q ss_pred             eeccCCCcceecCCCcc-ccceeceeEeccce
Q 006185          589 QIIDCPGMKTFGYGNQL-TPKLLKGVEFGYCK  619 (657)
Q Consensus       589 ~i~~C~~l~~lp~~~~~-l~~~L~~L~i~~C~  619 (657)
                      +++++ .++.++..... ..++|+.|++.++|
T Consensus       590 ~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          590 NLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             ECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             ECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence            99887 67776653221 12568888888765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.6e-36  Score=332.61  Aligned_cols=534  Identities=16%  Similarity=0.144  Sum_probs=312.2

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~   98 (657)
                      ++++.++..++++|..+. +++++|++++|.+..+++..|.++++|++|++++|++..+ |..|+++++|++|++++|..
T Consensus        15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             ceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            345555555555554432 2455666666655555444455566666666666655433 44555566666666665553


Q ss_pred             CC-CCcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185           99 LP-DLSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE  176 (657)
Q Consensus        99 ~~-~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~  176 (657)
                      .. .|..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..     
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-----  167 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY-----  167 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE-----
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc-----
Confidence            22 234555566666666666655554 3445556666666666532 333211113345566666665554431     


Q ss_pred             cccccccchhhhcCCCCcc--EEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecc
Q 006185          177 EDTRSNAKFIELGALSRLT--SLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD  253 (657)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  253 (657)
                            ..+..++.+++|+  .|++++|.+..++.. .....|+.|++.++.  ..+    ..+..+....+..+.+...
T Consensus       168 ------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~--~~~----~~~~~l~~~~l~~l~~~~~  235 (606)
T 3t6q_A          168 ------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ--NLL----VIFKGLKNSTIQSLWLGTF  235 (606)
T ss_dssp             ------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS--CHH----HHHHHTTTCEEEEEECCCC
T ss_pred             ------cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch--hHH----HHhhhccccchhheechhh
Confidence                  2234455555555  555555555433332 333455555554332  111    1111222222222222211


Q ss_pred             cch--hhhHHHHHHHH--ccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEe
Q 006185          254 MRI--SALHSWIKNLL--LRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLF  329 (657)
Q Consensus       254 ~~~--~~l~~~~~~~~--~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  329 (657)
                      ...  ..++......+  .+++.|+++++ .+.+..+. ....+++|++|++++| .++.++....     .+++|++|+
T Consensus       236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~lp~~l~-----~l~~L~~L~  307 (606)
T 3t6q_A          236 EDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSN-TFHCFSGLQELDLTAT-HLSELPSGLV-----GLSTLKKLV  307 (606)
T ss_dssp             TTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTT-TTTTCTTCSEEECTTS-CCSCCCSSCC-----SCTTCCEEE
T ss_pred             ccccccccChhHhchhhcCceeEEEeecC-ccCccCHH-HhccccCCCEEeccCC-ccCCCChhhc-----ccccCCEEE
Confidence            100  00111111111  27888888877 44444433 2245899999999999 6666655433     488999999


Q ss_pred             ccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCC
Q 006185          330 IRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFS  409 (657)
Q Consensus       330 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  409 (657)
                      ++++. ++...  ....+.+++|++|++++|..... .+...+..+++|++|+++++.- +.+..      .+..+..++
T Consensus       308 l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~------~~~~~~~l~  376 (606)
T 3t6q_A          308 LSANK-FENLC--QISASNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSHDDI-ETSDC------CNLQLRNLS  376 (606)
T ss_dssp             CTTCC-CSBGG--GGCGGGCTTCSEEECCSCSSCCB-CCSSTTTTCTTCCEEECCSSCC-CEEEE------STTTTTTCT
T ss_pred             CccCC-cCcCc--hhhhhccCcCCEEECCCCCcccc-cchhhhhccCcCCEEECCCCcc-ccccC------cchhcccCC
Confidence            99885 32211  11234789999999999765444 3443346889999999998543 32210      133467789


Q ss_pred             cccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCC
Q 006185          410 SLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTP  489 (657)
Q Consensus       410 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~  489 (657)
                      +|++|+++++. ++.+.  +.....+++|++|++++|.--...++..+..+++|++|+++++       .+....+..+.
T Consensus       377 ~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~  446 (606)
T 3t6q_A          377 HLQSLNLSYNE-PLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-------LLDISSEQLFD  446 (606)
T ss_dssp             TCCEEECCSCS-CEEEC--TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-------CCBTTCTTTTT
T ss_pred             CCCEEECCCCc-CCcCC--HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-------ccCCcCHHHHh
Confidence            99999999874 44432  2234457899999999975444444556888999999999874       23333456677


Q ss_pred             CCCCccEEEEecCCCcce-ecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCc
Q 006185          490 SLGNLVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSL  568 (657)
Q Consensus       490 ~~~~L~~L~i~~c~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l  568 (657)
                      .+++|+.|++++|.--.. +.....+..+++|++|++++|. ++.++.            .....+++|+.|+++++ ++
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l  512 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ------------HAFTSLKMMNHVDLSHN-RL  512 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CC
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh------------hhhccccCCCEEECCCC-cc
Confidence            899999999999863321 2222446789999999999985 554431            12225899999999997 45


Q ss_pred             cccccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEeccceee
Q 006185          569 TCFSSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKYC  621 (657)
Q Consensus       569 ~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~l  621 (657)
                      +..+..+..   .+++| .|+++++ +++.+|.. +..+ ++|+.|++++||..
T Consensus       513 ~~~~~~~l~---~l~~L-~L~L~~N-~l~~~~~~~~~~l-~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          513 TSSSIEALS---HLKGI-YLNLASN-HISIILPSLLPIL-SQQRTINLRQNPLD  560 (606)
T ss_dssp             CGGGGGGGT---TCCSC-EEECCSS-CCCCCCGGGHHHH-HTSSEEECTTCCEE
T ss_pred             CcCChhHhC---ccccc-EEECcCC-cccccCHhhcccC-CCCCEEeCCCCCcc
Confidence            554414554   57889 9999998 55565543 3444 67899999999853

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.1e-36  Score=333.58  Aligned_cols=548  Identities=18%  Similarity=0.204  Sum_probs=380.9

Q ss_pred             CCCCCCCCCC--CCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC
Q 006185            3 AGVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP   78 (657)
Q Consensus         3 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l   78 (657)
                      +++.++.+|.  +..+++|++|++++|.++.++...  ++++|++|++++|.+..+|+..|+++++|++|++++|+++.+
T Consensus        33 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  112 (680)
T 1ziw_A           33 THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI  112 (680)
T ss_dssp             CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred             CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc
Confidence            3556777773  889999999999999999876554  899999999999999999988789999999999999999887


Q ss_pred             C-ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-c--cCCCCCCEEEccCCCCCCCCchhHh
Q 006185           79 P-SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-F--GRLSHLRLLDLTDCYNLELIPPGVL  153 (657)
Q Consensus        79 p-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i--~~l~~L~~L~l~~c~~~~~~~~~~~  153 (657)
                      + ..|+++++|++|++++|..... |..++++++|++|++++|.++.++.. +  ..+++|++|++++| .++.++...+
T Consensus       113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~  191 (680)
T 1ziw_A          113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCF  191 (680)
T ss_dssp             CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGG
T ss_pred             ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhh
Confidence            6 6799999999999999985443 57789999999999999999977654 3  36789999999996 4555555446


Q ss_pred             hcCccCcEEEcccCccccccc-------------cc--cc-cccccchhhhcCCC--CccEEEeecCCCccCCCC--CCC
Q 006185          154 SRLRKLEELYMSHSFCHWQFE-------------SE--ED-TRSNAKFIELGALS--RLTSLHIDIPKGEIMPSD--MSL  213 (657)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~-------------g~--~~-~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~--~~l  213 (657)
                      ..+.+|+.|++.++.+.....             ..  .. .-....+..+..++  +|+.|++++|.+..++..  ..+
T Consensus       192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l  271 (680)
T 1ziw_A          192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL  271 (680)
T ss_dssp             GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc
Confidence            666555555544432210000             00  00 00012344555554  499999999998666543  678


Q ss_pred             CCccEEEEEEcCccChhhHHHHHhhccc-ccCcceEEeecccc--------hhhhHHHHHHHHccccEEEEeeccccccc
Q 006185          214 PNLTSFSITIGEEDTLNDFIELFLENFN-KRCSRAMGLSQDMR--------ISALHSWIKNLLLRSEILALIEVNDLENI  284 (657)
Q Consensus       214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~l~~~~~--------~~~l~~~~~~~~~~L~~L~L~~~~~l~~~  284 (657)
                      ++|+.|++.++....      ..+..+. .+.++.+++.++..        +..+++.....+++|+.|+++++. +...
T Consensus       272 ~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~  344 (680)
T 1ziw_A          272 PQLEYFFLEYNNIQH------LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGI  344 (680)
T ss_dssp             TTCCEEECCSCCBSE------ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCC
T ss_pred             ccccEeeCCCCccCc------cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCC
Confidence            999999998763222      1122232 37888888876521        111111122234899999998873 4444


Q ss_pred             cccccccccccceEEEeecCC-CceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCc
Q 006185          285 FSNLANDDFNELMFLYIFGCN-EMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSM  363 (657)
Q Consensus       285 ~~~l~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l  363 (657)
                      .+. ....+++|++|++++|. .+..++....  .....++|+.|+++++. ++.+..  .....+++|+.|+++++.- 
T Consensus       345 ~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f--~~~~~~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N~l-  417 (680)
T 1ziw_A          345 KSN-MFTGLINLKYLSLSNSFTSLRTLTNETF--VSLAHSPLHILNLTKNK-ISKIES--DAFSWLGHLEVLDLGLNEI-  417 (680)
T ss_dssp             CTT-TTTTCTTCCEEECTTCBSCCCEECTTTT--GGGTTSCCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSSCC-
T ss_pred             Chh-HhccccCCcEEECCCCchhhhhcchhhh--cccccCcCceEECCCCC-CCeECh--hhhhCCCCCCEEeCCCCcC-
Confidence            333 22458999999999884 2333333211  11123689999999986 332211  1234789999999999654 


Q ss_pred             ccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEe
Q 006185          364 LKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRV  443 (657)
Q Consensus       364 ~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i  443 (657)
                      ....|...+..+++|++|+++++. +..+.        +..+..+++|+.|++.++. ++.+...+.....+++|++|++
T Consensus       418 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          418 GQELTGQEWRGLENIFEIYLSYNK-YLQLT--------RNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             EEECCSGGGTTCTTCCEEECCSCS-EEECC--------TTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEEC
T ss_pred             ccccCcccccCcccccEEecCCCC-cceeC--------hhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEEC
Confidence            333443444789999999999975 33321        4456779999999999964 3332223444567899999999


Q ss_pred             ccCcccccccccccccccchhhhhhhcccccceeecccc-----cCCCCCCCCCCccEEEEecCCCcceecccchhhccc
Q 006185          444 EECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATT-----STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLV  518 (657)
Q Consensus       444 ~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~-----~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~  518 (657)
                      +++ +++.+++..+..+++|++|+++++. +.   .++.     .....+..+++|+.|+++++ +++.+ +...+..++
T Consensus       488 s~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~---~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~  560 (680)
T 1ziw_A          488 SNN-NIANINDDMLEGLEKLEILDLQHNN-LA---RLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI-PVEVFKDLF  560 (680)
T ss_dssp             CSS-CCCCCCTTTTTTCTTCCEEECCSSC-CG---GGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred             CCC-CCCcCChhhhccccccCEEeCCCCC-cc---ccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC-CHHHccccc
Confidence            996 5788888889999999999999753 11   1111     11223678899999999887 56665 444457899


Q ss_pred             CCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcce
Q 006185          519 RLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKT  598 (657)
Q Consensus       519 ~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~  598 (657)
                      +|++|+++++ .++.++..            ....+++|+.|+++++ +++.++ .... ...+++|++|+++++|-.-+
T Consensus       561 ~L~~L~Ls~N-~l~~l~~~------------~~~~l~~L~~L~L~~N-~l~~~~-~~~~-~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          561 ELKIIDLGLN-NLNTLPAS------------VFNNQVSLKSLNLQKN-LITSVE-KKVF-GPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             TCCEEECCSS-CCCCCCTT------------TTTTCTTCCEEECTTS-CCCBCC-HHHH-HHHHTTCSEEECTTCCCCBC
T ss_pred             CcceeECCCC-CCCcCCHh------------HhCCCCCCCEEECCCC-cCCccC-hhHh-cccccccCEEEccCCCcccC
Confidence            9999999876 46665421            1124799999999996 788876 3321 11368999999998765443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.9e-35  Score=319.94  Aligned_cols=504  Identities=14%  Similarity=0.117  Sum_probs=365.5

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~   96 (657)
                      .-++++.+++.++.+|.... +++++|++++|.+..+++..|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus        12 ~~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           12 PNITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TTTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            34689999999999998664 7899999999999988887789999999999999999876 668999999999999999


Q ss_pred             CCCCC-CcccCCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCcccccc
Q 006185           97 NHLPD-LSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        97 ~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      ..... |..++++++|++|++++|.++.+| ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+..  
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~--  167 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT--  167 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE--
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee--
Confidence            95555 789999999999999999999877 679999999999999965443 46776 8999999999999997653  


Q ss_pred             ccccccccccchhhhcCCCC----ccEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185          174 ESEEDTRSNAKFIELGALSR----LTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM  248 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  248 (657)
                               ..+..++.+++    ++.|++++|.+..++.. ....+|+.|++.++...                     
T Consensus       168 ---------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~---------------------  217 (606)
T 3vq2_A          168 ---------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS---------------------  217 (606)
T ss_dssp             ---------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC---------------------
T ss_pred             ---------cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc---------------------
Confidence                     22333444433    55899999998777765 44458888888865211                     


Q ss_pred             EeecccchhhhHHHHHHHHccccEEEEeecc--ccccccccccccccc-----cceEEEeecCCCceEEeeccccccccc
Q 006185          249 GLSQDMRISALHSWIKNLLLRSEILALIEVN--DLENIFSNLANDDFN-----ELMFLYIFGCNEMKCLLNSLERTQRVT  321 (657)
Q Consensus       249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~--~l~~~~~~l~~~~~~-----~L~~L~l~~~~~l~~~~~~~~~~~~~~  321 (657)
                             -...|.++..+ ++++.+.+....  .... ...+....+.     .++.+.+..+..+.....     ....
T Consensus       218 -------~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~-l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-----~~~~  283 (606)
T 3vq2_A          218 -------SNIMKTCLQNL-AGLHVHRLILGEFKDERN-LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-----KFHC  283 (606)
T ss_dssp             -------HHHHHHHHHTT-TTCEEEEEEEECCTTSCC-CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-----SCGG
T ss_pred             -------hhHHHHHhccc-cccccccccccccccCCc-ccccChHHhhhhhhccHhheecccccccccccc-----cccc
Confidence                   01133343333 666666664321  1100 0011111112     455666644434432222     2345


Q ss_pred             cccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccc
Q 006185          322 LRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIA  401 (657)
Q Consensus       322 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  401 (657)
                      +++|+.|+++++. ++.+    .....+++|++|++++|.. .. +|. +  .+++|++|+++++..+..+         
T Consensus       284 l~~L~~L~l~~~~-~~~l----~~l~~~~~L~~L~l~~n~l-~~-lp~-~--~l~~L~~L~l~~n~~~~~~---------  344 (606)
T 3vq2_A          284 LANVSAMSLAGVS-IKYL----EDVPKHFKWQSLSIIRCQL-KQ-FPT-L--DLPFLKSLTLTMNKGSISF---------  344 (606)
T ss_dssp             GTTCSEEEEESCC-CCCC----CCCCTTCCCSEEEEESCCC-SS-CCC-C--CCSSCCEEEEESCSSCEEC---------
T ss_pred             CCCCCEEEecCcc-chhh----hhccccccCCEEEcccccC-cc-ccc-C--CCCccceeeccCCcCccch---------
Confidence            8999999999986 3322    2345788999999999876 55 553 3  8899999999998665533         


Q ss_pred             ccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeeccc
Q 006185          402 KEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHAT  481 (657)
Q Consensus       402 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~  481 (657)
                        ....+++|+.|+++++. ++.+...+.....+++|++|++++|. ++.+ |..+..+++|+.|++.++       .+.
T Consensus       345 --~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~~~~~~l~~L~~L~l~~n-------~l~  412 (606)
T 3vq2_A          345 --KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM-SANFMGLEELQHLDFQHS-------TLK  412 (606)
T ss_dssp             --CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEE-CCCCTTCTTCCEEECTTS-------EEE
T ss_pred             --hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccc-hhhccCCCCCCeeECCCC-------ccC
Confidence              24578999999999974 55432223344568999999999986 5655 588999999999999975       222


Q ss_pred             ccCC-CCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCee
Q 006185          482 TSTS-SPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSI  560 (657)
Q Consensus       482 ~~~~-~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L  560 (657)
                      ...+ ..+..+++|+.|++++|. +....+. .+..+++|++|++++|.--..+..            .....+++|+.|
T Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L  478 (606)
T 3vq2_A          413 RVTEFSAFLSLEKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLS------------NVFANTTNLTFL  478 (606)
T ss_dssp             STTTTTTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEE
T ss_pred             CccChhhhhccccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCCcCCCcchH------------HhhccCCCCCEE
Confidence            2223 467789999999999987 4443333 357899999999999863322211            122258999999


Q ss_pred             EcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccce
Q 006185          561 KLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCK  619 (657)
Q Consensus       561 ~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~  619 (657)
                      +++++ .++.++.....   .+++|++|++++|.--...|..+..+ ++|++|++++|.
T Consensus       479 ~Ls~n-~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~  532 (606)
T 3vq2_A          479 DLSKC-QLEQISWGVFD---TLHRLQLLNMSHNNLLFLDSSHYNQL-YSLSTLDCSFNR  532 (606)
T ss_dssp             ECTTS-CCCEECTTTTT---TCTTCCEEECCSSCCSCEEGGGTTTC-TTCCEEECTTSC
T ss_pred             ECCCC-cCCccChhhhc---ccccCCEEECCCCcCCCcCHHHccCC-CcCCEEECCCCc
Confidence            99998 56665424455   68999999999995444447666665 679999999996

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.8e-34  Score=316.37  Aligned_cols=509  Identities=14%  Similarity=0.078  Sum_probs=359.6

Q ss_pred             CcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEEeeC
Q 006185           41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILDLSK  118 (657)
Q Consensus        41 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~  118 (657)
                      -++++.++..+..+|..+   .+++++|++++|.++.+ |..|+++++|++|++++|.... .|..|+++++|++|++++
T Consensus        14 ~~~~~c~~~~l~~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            457888888888999865   35899999999999876 6789999999999999998444 468899999999999999


Q ss_pred             CCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEE
Q 006185          119 SDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSL  197 (657)
Q Consensus       119 ~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L  197 (657)
                      |.++.+ |..++++++|++|++++| .+..++...++++++|++|++++|.+..           .....+..+++|+.|
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L  158 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS-----------IKLPKGFPTEKLKVL  158 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCC-----------CCCCTTCCCTTCCEE
T ss_pred             CcccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccc-----------cCcccccCCcccCEE
Confidence            999865 678999999999999995 5666644448999999999999997642           222345558999999


Q ss_pred             EeecCCCccCCCC--CCCCCcc--EEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHH-ccccE
Q 006185          198 HIDIPKGEIMPSD--MSLPNLT--SFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLL-LRSEI  272 (657)
Q Consensus       198 ~l~~~~~~~~~~~--~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~-~~L~~  272 (657)
                      ++++|.+..++..  ..+++|+  .|++.++....      ..+..+....++.+++.++..+.   ..+.... ..++.
T Consensus       159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~------~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~l~~  229 (606)
T 3t6q_A          159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG------IEPGAFDSAVFQSLNFGGTQNLL---VIFKGLKNSTIQS  229 (606)
T ss_dssp             ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE------ECTTTTTTCEEEEEECTTCSCHH---HHHHHTTTCEEEE
T ss_pred             EcccCcccccChhhhhhhcccceeEEecCCCccCc------cChhHhhhccccccccCCchhHH---HHhhhccccchhh
Confidence            9999998766543  5678888  66666543221      12333444678888998886443   3333320 23444


Q ss_pred             EEEeeccccccc-ccccccccc--ccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCC
Q 006185          273 LALIEVNDLENI-FSNLANDDF--NELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCL  349 (657)
Q Consensus       273 L~L~~~~~l~~~-~~~l~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  349 (657)
                      +.+..+...... ...-....+  .+|+.|+++++ .+..++..    .+..+++|++|+++++. ++.+.   ...+.+
T Consensus       230 l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~lp---~~l~~l  300 (606)
T 3t6q_A          230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSN----TFHCFSGLQELDLTATH-LSELP---SGLVGL  300 (606)
T ss_dssp             EECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTT----TTTTCTTCSEEECTTSC-CSCCC---SSCCSC
T ss_pred             eechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHH----HhccccCCCEEeccCCc-cCCCC---hhhccc
Confidence            444443332211 111011112  27899999998 55544433    34568999999999985 43221   113478


Q ss_pred             CCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCC
Q 006185          350 SNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGD  429 (657)
Q Consensus       350 ~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  429 (657)
                      ++|++|++++| .++...|..+ ..+++|++|+++++.....+.        +..+..+++|++|+++++. ++.+....
T Consensus       301 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~--------~~~~~~l~~L~~L~l~~n~-l~~~~~~~  369 (606)
T 3t6q_A          301 STLKKLVLSAN-KFENLCQISA-SNFPSLTHLSIKGNTKRLELG--------TGCLENLENLRELDLSHDD-IETSDCCN  369 (606)
T ss_dssp             TTCCEEECTTC-CCSBGGGGCG-GGCTTCSEEECCSCSSCCBCC--------SSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred             ccCCEEECccC-CcCcCchhhh-hccCcCCEEECCCCCcccccc--------hhhhhccCcCCEEECCCCc-cccccCcc
Confidence            99999999996 4555445443 689999999999975443331        2336789999999999975 55443223


Q ss_pred             CcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccC-CCCCCCCCCccEEEEecCCCccee
Q 006185          430 TQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTST-SSPTPSLGNLVSITIRGCGKLRNL  508 (657)
Q Consensus       430 ~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~i~~c~~L~~l  508 (657)
                      .....+++|++|++++| .+....|..+..+++|++|++.++.       +.... +..+..+++|+.|++++|. ++..
T Consensus       370 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~  440 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTR-------LKVKDAQSPFQNLHLLKVLNLSHSL-LDIS  440 (606)
T ss_dssp             TTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCC-------EECCTTCCTTTTCTTCCEEECTTCC-CBTT
T ss_pred             hhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCc-------CCCcccchhhhCcccCCEEECCCCc-cCCc
Confidence            34556899999999997 5677778899999999999998752       22222 2347789999999999986 4443


Q ss_pred             cccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeecccccee
Q 006185          509 FTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEAL  588 (657)
Q Consensus       509 ~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L  588 (657)
                      .+ ..+..+++|++|++++|.--...+...          .....+++|+.|++++| .++.++.....   .+++|++|
T Consensus       441 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~----------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L  505 (606)
T 3t6q_A          441 SE-QLFDGLPALQHLNLQGNHFPKGNIQKT----------NSLQTLGRLEILVLSFC-DLSSIDQHAFT---SLKMMNHV  505 (606)
T ss_dssp             CT-TTTTTCTTCCEEECTTCBCGGGEECSS----------CGGGGCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEE
T ss_pred             CH-HHHhCCCCCCEEECCCCCCCccccccc----------hhhccCCCccEEECCCC-ccCccChhhhc---cccCCCEE
Confidence            23 335779999999999986322111111          12235899999999998 56666425555   68999999


Q ss_pred             eeccCCCcceecCCCccccceeceeEeccce
Q 006185          589 QIIDCPGMKTFGYGNQLTPKLLKGVEFGYCK  619 (657)
Q Consensus       589 ~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~  619 (657)
                      +++++.--...|.....+ +.| .|++++|.
T Consensus       506 ~Ls~N~l~~~~~~~l~~l-~~L-~L~L~~N~  534 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHL-KGI-YLNLASNH  534 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTC-CSC-EEECCSSC
T ss_pred             ECCCCccCcCChhHhCcc-ccc-EEECcCCc
Confidence            999985444455555555 567 89999886

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=315.74  Aligned_cols=497  Identities=19%  Similarity=0.194  Sum_probs=300.6

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-c
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-S   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~   80 (657)
                      +.+++++|. .-.+.+++|++++|.++.++...  .+++|++|++++|.+..+++..|.++++|++|++++|.++.++ .
T Consensus        16 ~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (570)
T 2z63_A           16 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (570)
T ss_dssp             SSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence            456777774 23467888888888888776533  7888888888888888777777888888888888888887655 6


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc--ccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE--IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      .|+++++|++|++++|.....+ ..++++++|++|++++|.++.  +|..++++++|++|++++| .+..++...++.++
T Consensus        95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~  173 (570)
T 2z63_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH  173 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHH
T ss_pred             hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchh
Confidence            7888888888888888744444 358888888888888888874  6888888888888888884 45555544477777


Q ss_pred             cC----cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc--cCCCC-CCCCCccEEEEEEcCccChh
Q 006185          158 KL----EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE--IMPSD-MSLPNLTSFSITIGEEDTLN  230 (657)
Q Consensus       158 ~L----~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~l~~L~~L~l~~~~~~~~~  230 (657)
                      +|    ++|++++|.+..           ..+..+... +|+.|++.++...  .++.. ..+.+++...+.......  
T Consensus       174 ~L~~~~~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--  239 (570)
T 2z63_A          174 QMPLLNLSLDLSLNPMNF-----------IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--  239 (570)
T ss_dssp             TCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--
T ss_pred             ccchhhhhcccCCCCcee-----------cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--
Confidence            77    788888876542           222333333 6888888776421  11111 334555544443221000  


Q ss_pred             hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHH--ccccEEEEeeccccccccccccccccccceEEEeecCCCce
Q 006185          231 DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLL--LRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMK  308 (657)
Q Consensus       231 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~--~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~  308 (657)
                                            ...+..++.+....+  -.++.+.+.++..+.+..+.. ...+++|++|+++++ .+.
T Consensus       240 ----------------------~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~  295 (570)
T 2z63_A          240 ----------------------EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV-TIE  295 (570)
T ss_dssp             ----------------------CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESC-EEC
T ss_pred             ----------------------chhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCc-cch
Confidence                                  000000000000000  235566666554443333322 134778888888877 444


Q ss_pred             EEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccccc
Q 006185          309 CLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCEL  388 (657)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~  388 (657)
                      .++....     .+ +|+.|++++|. +     ..+|...+++|++|+++++..... .+.   ..+++|++|+++++. 
T Consensus       296 ~l~~~~~-----~~-~L~~L~l~~n~-~-----~~l~~~~l~~L~~L~l~~n~~~~~-~~~---~~~~~L~~L~l~~n~-  358 (570)
T 2z63_A          296 RVKDFSY-----NF-GWQHLELVNCK-F-----GQFPTLKLKSLKRLTFTSNKGGNA-FSE---VDLPSLEFLDLSRNG-  358 (570)
T ss_dssp             SCCBCCS-----CC-CCSEEEEESCB-C-----SSCCBCBCSSCCEEEEESCBSCCB-CCC---CBCTTCCEEECCSSC-
T ss_pred             hhhhhhc-----cC-CccEEeeccCc-c-----cccCcccccccCEEeCcCCccccc-ccc---ccCCCCCEEeCcCCc-
Confidence            4443322     24 77888887775 1     244556677888888887654333 332   356777777777753 


Q ss_pred             ceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhh
Q 006185          389 LVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVL  468 (657)
Q Consensus       389 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l  468 (657)
                      ++.+..      .+..+..+++|+.|++++|. ++.++.   ....+++|++|++++|. +....+              
T Consensus       359 l~~~~~------~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~--------------  413 (570)
T 2z63_A          359 LSFKGC------CSQSDFGTTSLKYLDLSFNG-VITMSS---NFLGLEQLEHLDFQHSN-LKQMSE--------------  413 (570)
T ss_dssp             CBEEEE------EEHHHHTCSCCCEEECCSCS-EEEEEE---EEETCTTCCEEECTTSE-EESCTT--------------
T ss_pred             cCcccc------ccccccccCccCEEECCCCc-cccccc---cccccCCCCEEEccCCc-cccccc--------------
Confidence            222100      02334567777777777754 343321   13456777777777753 222211              


Q ss_pred             hcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCc-ceeeeCcCceecccCC
Q 006185          469 YRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTL-QEIIMDDEGEVGLQGA  547 (657)
Q Consensus       469 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l-~~~~~~~~~~~~l~~~  547 (657)
                                      ...+..+++|+.|++++|. +....+ ..+..+++|++|++++|.-. ..++            
T Consensus       414 ----------------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p------------  463 (570)
T 2z63_A          414 ----------------FSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP------------  463 (570)
T ss_dssp             ----------------SCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEEC------------
T ss_pred             ----------------hhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccch------------
Confidence                            1234466777777777764 333322 23456777777777777522 1222            


Q ss_pred             CcceEeccccCeeEcCcCCCcccc-ccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEecccee
Q 006185          548 STKKITFPSLFSIKLCDLGSLTCF-SSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKY  620 (657)
Q Consensus       548 ~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~  620 (657)
                       .....+++|+.|++++| +++.+ | ....   .+++|++|++++| +++.+|.. +..+ ++|++|++++++.
T Consensus       464 -~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~N~~  530 (570)
T 2z63_A          464 -DIFTELRNLTFLDLSQC-QLEQLSP-TAFN---SLSSLQVLNMASN-QLKSVPDGIFDRL-TSLQKIWLHTNPW  530 (570)
T ss_dssp             -SCCTTCTTCCEEECTTS-CCCEECT-TTTT---TCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEECCSSCB
T ss_pred             -hhhhcccCCCEEECCCC-ccccCCh-hhhh---cccCCCEEeCCCC-cCCCCCHHHhhcc-cCCcEEEecCCcc
Confidence             11124677888888876 45555 4 4544   4678888888776 56666543 3333 5678888877763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.3e-35  Score=319.81  Aligned_cols=477  Identities=19%  Similarity=0.216  Sum_probs=282.2

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      +++++++|. ...+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|.++.++..
T Consensus        14 ~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           14 SRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             TSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred             CCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence            456666664 223677777777777776543 23 677777777777777766655567777777777777777666543


Q ss_pred             -ccCCCCCcEEEccCCCCC--CCCcccCCCCCCCEEEeeCCC-CCccc-ccccCCCCCCEEEccCCCCCCCCchhHhhcC
Q 006185           82 -LSFLSNLRTLRLDYCNHL--PDLSLIGELSGLEILDLSKSD-VNEIP-VSFGRLSHLRLLDLTDCYNLELIPPGVLSRL  156 (657)
Q Consensus        82 -~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l  156 (657)
                       |+++++|++|++++|...  ..|..++++++|++|++++|. ++.+| ..+.++++|++|++++|...+..|.. ++++
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l  171 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI  171 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred             HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence             777777777777777633  234667777777777777776 55565 35777777777777775433334444 6777


Q ss_pred             ccCcEEEcccCccccccccccccccccchh-hhcCCCCccEEEeecCCCccCCC-----CCCCCCccEEEEEEcCccChh
Q 006185          157 RKLEELYMSHSFCHWQFESEEDTRSNAKFI-ELGALSRLTSLHIDIPKGEIMPS-----DMSLPNLTSFSITIGEEDTLN  230 (657)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~  230 (657)
                      ++|++|+++++...            ..+. .+..+++|+.|++++|.+..++.     ...+++|+.|++.++.     
T Consensus       172 ~~L~~L~l~~n~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-----  234 (549)
T 2z81_A          172 RDIHHLTLHLSESA------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-----  234 (549)
T ss_dssp             SEEEEEEEECSBST------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-----
T ss_pred             ccCceEecccCccc------------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-----
Confidence            77777777666432            1111 12456777777777776544321     1334566666665431     


Q ss_pred             hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEE
Q 006185          231 DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCL  310 (657)
Q Consensus       231 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~  310 (657)
                                              -....+..+...+                       ..+++|+.+++.+| .+..+
T Consensus       235 ------------------------l~~~~~~~l~~~~-----------------------~~~~~L~~l~l~~~-~~~~~  266 (549)
T 2z81_A          235 ------------------------LTDESFNELLKLL-----------------------RYILELSEVEFDDC-TLNGL  266 (549)
T ss_dssp             ------------------------EEHHHHHHHHGGG-----------------------GGCTTCCEEEEESC-EEECC
T ss_pred             ------------------------cchhHHHHHHHHh-----------------------hhhccccccccccc-ccccc
Confidence                                    0011111111110                       12334444444444 11111


Q ss_pred             eecc--ccccccccccccEEeccccccccccc-cccCC--CCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcc
Q 006185          311 LNSL--ERTQRVTLRKLEWLFIRENQNFVEIC-HGQLP--AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVES  385 (657)
Q Consensus       311 ~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~--~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~  385 (657)
                      ....  .......+++|+.|.+.++. +..+. ....+  ...+++|++|+++++. ++. +|..+++.+++|++|++++
T Consensus       267 ~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~-ip~~~~~~l~~L~~L~Ls~  343 (549)
T 2z81_A          267 GDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSK-VFL-VPCSFSQHLKSLEFLDLSE  343 (549)
T ss_dssp             SCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCC-CCHHHHHHCTTCCEEECCS
T ss_pred             ccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCc-ccc-CCHHHHhcCccccEEEccC
Confidence            0000  00012235566666665543 11100 00000  0134678899998854 554 6666656788999999988


Q ss_pred             cccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhh
Q 006185          386 CELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEE  465 (657)
Q Consensus       386 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~  465 (657)
                      +.-...++..      +..+..+++|+.|+++++ .++.++..+.....+++|++|++++| +++.+             
T Consensus       344 N~l~~~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-------------  402 (549)
T 2z81_A          344 NLMVEEYLKN------SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPM-------------  402 (549)
T ss_dssp             SCCCHHHHHH------HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC-------------
T ss_pred             Cccccccccc------hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccC-------------
Confidence            6432211000      112456788899998886 45554211122445788888888887 45544             


Q ss_pred             hhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceeccc
Q 006185          466 MVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQ  545 (657)
Q Consensus       466 l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~  545 (657)
                                         |..+..+++|+.|++++|. ++.++.    ..+++|++|++++|. ++.++          
T Consensus       403 -------------------p~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N~-l~~~~----------  447 (549)
T 2z81_A          403 -------------------PDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNNN-LDSFS----------  447 (549)
T ss_dssp             -------------------CSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSSC-CSCCC----------
T ss_pred             -------------------ChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCCC-hhhhc----------
Confidence                               3334466788888888875 554421    124688899998884 54332          


Q ss_pred             CCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEecccee
Q 006185          546 GASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKY  620 (657)
Q Consensus       546 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~  620 (657)
                            ..+++|+.|+++++ +++.+| .. .   .+++|++|+++++ .++.+|.. +..+ ++|+.|++++|+.
T Consensus       448 ------~~l~~L~~L~Ls~N-~l~~ip-~~-~---~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~l~~N~~  509 (549)
T 2z81_A          448 ------LFLPRLQELYISRN-KLKTLP-DA-S---LFPVLLVMKISRN-QLKSVPDGIFDRL-TSLQKIWLHTNPW  509 (549)
T ss_dssp             ------CCCTTCCEEECCSS-CCSSCC-CG-G---GCTTCCEEECCSS-CCCCCCTTGGGGC-TTCCEEECCSSCB
T ss_pred             ------ccCChhcEEECCCC-ccCcCC-Cc-c---cCccCCEEecCCC-ccCCcCHHHHhcC-cccCEEEecCCCc
Confidence                  14788999999986 678887 53 2   3689999999987 67777654 4444 6789999988884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=297.44  Aligned_cols=478  Identities=17%  Similarity=0.135  Sum_probs=314.6

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~   96 (657)
                      ..++++.++..++++|.... +++++|++++|.+..++...|.++++|++|++++|+++.++ ..|+++++|++|++++|
T Consensus         8 ~~~~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A            8 PNITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TTTEEECCSSCCSSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCcEEEeCCCCccccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            34678888888999997553 57999999999999888777899999999999999998764 67999999999999999


Q ss_pred             CCCCC-CcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCcccccc
Q 006185           97 NHLPD-LSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        97 ~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      ..... +..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+..  
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~--  163 (570)
T 2z63_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS--  163 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE--
T ss_pred             cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce--
Confidence            84444 4789999999999999999998876 59999999999999964433 36776 8999999999999997642  


Q ss_pred             ccccccccccchhhhcCCCCc----cEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185          174 ESEEDTRSNAKFIELGALSRL----TSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM  248 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  248 (657)
                               ..+..++.+++|    +.|++++|.+..++.. ....+|+.|++.++..                      
T Consensus       164 ---------~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~----------------------  212 (570)
T 2z63_A          164 ---------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD----------------------  212 (570)
T ss_dssp             ---------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS----------------------
T ss_pred             ---------ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccc----------------------
Confidence                     334455666666    7899999988666554 3344788888876411                      


Q ss_pred             EeecccchhhhHHHHHHHHccccEEEEeec--cc---cccccccccccccc--cceEEEeecCCCceEEeeccccccccc
Q 006185          249 GLSQDMRISALHSWIKNLLLRSEILALIEV--ND---LENIFSNLANDDFN--ELMFLYIFGCNEMKCLLNSLERTQRVT  321 (657)
Q Consensus       249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~--~~---l~~~~~~l~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~  321 (657)
                            ....++..+..+ .+++...+...  ..   +..+. ......++  .++.+.+.++..+.....    .....
T Consensus       213 ------~~~~~~~~~~~l-~~l~~~~l~~~~~~~~~~l~~~~-~~~~~~l~~l~l~~l~l~~~~~~~~~~~----~~~~~  280 (570)
T 2z63_A          213 ------SLNVMKTCIQGL-AGLEVHRLVLGEFRNEGNLEKFD-KSALEGLCNLTIEEFRLAYLDYYLDDII----DLFNC  280 (570)
T ss_dssp             ------CTTHHHHHHHTT-TTCEEEEEEEEECCCCSSCEECC-TTTTGGGGGSEEEEEEEEETTEEESCST----TTTGG
T ss_pred             ------cccchhhhhcCc-cccceeeeccccccCchhhhhcc-hhhhccccccchhhhhhhcchhhhhhch----hhhcC
Confidence                  111233333322 44544444321  11   11111 10111122  234455555422221111    13345


Q ss_pred             cccccEEeccccccccccccccCC--CCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185          322 LRKLEWLFIRENQNFVEICHGQLP--AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN  399 (657)
Q Consensus       322 ~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  399 (657)
                      +++|+.|+++++. ++.     +|  ...+ +|++|++++|.. .. +|.   ..+++|++|++.++......       
T Consensus       281 l~~L~~L~l~~~~-l~~-----l~~~~~~~-~L~~L~l~~n~~-~~-l~~---~~l~~L~~L~l~~n~~~~~~-------  341 (570)
T 2z63_A          281 LTNVSSFSLVSVT-IER-----VKDFSYNF-GWQHLELVNCKF-GQ-FPT---LKLKSLKRLTFTSNKGGNAF-------  341 (570)
T ss_dssp             GTTCSEEEEESCE-ECS-----CCBCCSCC-CCSEEEEESCBC-SS-CCB---CBCSSCCEEEEESCBSCCBC-------
T ss_pred             cCcccEEEecCcc-chh-----hhhhhccC-CccEEeeccCcc-cc-cCc---ccccccCEEeCcCCcccccc-------
Confidence            6777777777764 221     22  1234 777777777543 33 333   25677777777775432211       


Q ss_pred             ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeec
Q 006185          400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIH  479 (657)
Q Consensus       400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~  479 (657)
                        +  ...+++|+.|+++++. ++.+...+.....+++|++|++++|. ++.+++                         
T Consensus       342 --~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-------------------------  390 (570)
T 2z63_A          342 --S--EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS-------------------------  390 (570)
T ss_dssp             --C--CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEE-------------------------
T ss_pred             --c--cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccc-------------------------
Confidence              1  1456777777777653 33321111123346667777777653 333211                         


Q ss_pred             ccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCe
Q 006185          480 ATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFS  559 (657)
Q Consensus       480 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~  559 (657)
                             .+..+++|++|++++|. +....+...+..+++|++|++++|. +.....            .....+++|+.
T Consensus       391 -------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~  449 (570)
T 2z63_A          391 -------NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN------------GIFNGLSSLEV  449 (570)
T ss_dssp             -------EEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCT------------TTTTTCTTCCE
T ss_pred             -------cccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccch------------hhhhcCCcCcE
Confidence                   13367889999998875 4444444456789999999999996 332211            11225899999


Q ss_pred             eEcCcCCCc-cccccCCCcceeeccccceeeeccCCCccee-cCCCccccceeceeEeccce
Q 006185          560 IKLCDLGSL-TCFSSSGLHATVEFLALEALQIIDCPGMKTF-GYGNQLTPKLLKGVEFGYCK  619 (657)
Q Consensus       560 L~l~~c~~l-~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~l-p~~~~~l~~~L~~L~i~~C~  619 (657)
                      |++++|.-- ..+| ....   .+++|++|++++|. ++.+ |..+..+ ++|++|++++|.
T Consensus       450 L~l~~n~l~~~~~p-~~~~---~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~  505 (570)
T 2z63_A          450 LKMAGNSFQENFLP-DIFT---ELRNLTFLDLSQCQ-LEQLSPTAFNSL-SSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTCEEGGGEEC-SCCT---TCTTCCEEECTTSC-CCEECTTTTTTC-TTCCEEECCSSC
T ss_pred             EECcCCcCccccch-hhhh---cccCCCEEECCCCc-cccCChhhhhcc-cCCCEEeCCCCc
Confidence            999998643 3577 6666   68999999999994 5555 6666655 679999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=307.97  Aligned_cols=515  Identities=18%  Similarity=0.189  Sum_probs=309.8

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCC-
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSP-   78 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~l-   78 (657)
                      ++.+++++|.  ..+++++|++++|.++.++. .+ .+++|++|++++|... .+++..|.++++|++|+|++|.+..+ 
T Consensus        12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            3567889997  67999999999999997754 44 8999999999999554 77666789999999999999999865 


Q ss_pred             CccccCCCCCcEEEccCCCCCC-CCc--ccCCCCCCCEEEeeCCCCCcc--cccccCCCCCCEEEccCCCCCCCCchhHh
Q 006185           79 PSSLSFLSNLRTLRLDYCNHLP-DLS--LIGELSGLEILDLSKSDVNEI--PVSFGRLSHLRLLDLTDCYNLELIPPGVL  153 (657)
Q Consensus        79 p~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L~l~~c~~~~~~~~~~~  153 (657)
                      |..|+++++|++|++++|.... .|.  .++++++|++|++++|.++.+  +..++++++|++|++++|......+.. +
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l  168 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-L  168 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-G
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-c
Confidence            8899999999999999998443 344  499999999999999999865  356999999999999996544444444 7


Q ss_pred             hcC--ccCcEEEcccCccccccccccccccccchhhhcCCC------CccEEEeecCCCc-cCCCC----CCCCCccEEE
Q 006185          154 SRL--RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALS------RLTSLHIDIPKGE-IMPSD----MSLPNLTSFS  220 (657)
Q Consensus       154 ~~l--~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~----~~l~~L~~L~  220 (657)
                      ..+  ++|+.|++++|.+..           ..+..++.+.      .|+.|++++|... ..+..    .....++.+.
T Consensus       169 ~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          169 EPLQGKTLSFFSLAANSLYS-----------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             HHHHHCSSCCCEECCSBSCC-----------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             ccccCCccceEECCCCcccc-----------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            776  899999999987643           2333344433      4999999998652 22221    3345677777


Q ss_pred             EEEcC---ccC---hhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccc
Q 006185          221 ITIGE---EDT---LNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFN  294 (657)
Q Consensus       221 l~~~~---~~~---~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~  294 (657)
                      +..+.   +..   ...........+..+.++.++++++.-....|..+. .+++|+.|+++++ .+....+. ....++
T Consensus       238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~~~~-~~~~l~  314 (844)
T 3j0a_A          238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYN-KINKIADE-AFYGLD  314 (844)
T ss_dssp             CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESC-CCCEECTT-TTTTCS
T ss_pred             cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCC-cCCCCChH-HhcCCC
Confidence            65211   000   011111111222335677777776632221122222 2367777777766 33333332 123467


Q ss_pred             cceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHh
Q 006185          295 ELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQS  374 (657)
Q Consensus       295 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~  374 (657)
                      +|++|++++| .+..+...    ....+++|+.|+++++. ++.+..  .....+++|+.|+++++ .++.+ +     .
T Consensus       315 ~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~i-~-----~  379 (844)
T 3j0a_A          315 NLQVLNLSYN-LLGELYSS----NFYGLPKVAYIDLQKNH-IAIIQD--QTFKFLEKLQTLDLRDN-ALTTI-H-----F  379 (844)
T ss_dssp             SCCEEEEESC-CCSCCCSC----SCSSCTTCCEEECCSCC-CCCCCS--SCSCSCCCCCEEEEETC-CSCCC-S-----S
T ss_pred             CCCEEECCCC-CCCccCHH----HhcCCCCCCEEECCCCC-CCccCh--hhhcCCCCCCEEECCCC-CCCcc-c-----C
Confidence            7777777777 34333221    23346777777777764 322111  11235677777777774 34432 1     2


Q ss_pred             cccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccc
Q 006185          375 FQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFP  454 (657)
Q Consensus       375 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~  454 (657)
                      +++|++|.++++ .++.+         +.   ...+++.|+++++ .++.+.. ......+++|++|+++++. ++...+
T Consensus       380 ~~~L~~L~l~~N-~l~~l---------~~---~~~~l~~L~ls~N-~l~~l~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~  443 (844)
T 3j0a_A          380 IPSIPDIFLSGN-KLVTL---------PK---INLTANLIHLSEN-RLENLDI-LYFLLRVPHLQILILNQNR-FSSCSG  443 (844)
T ss_dssp             CCSCSEEEEESC-CCCCC---------CC---CCTTCCEEECCSC-CCCSSTT-HHHHTTCTTCCEEEEESCC-CCCCCS
T ss_pred             CCCcchhccCCC-Ccccc---------cc---cccccceeecccC-ccccCch-hhhhhcCCccceeeCCCCc-cccccc
Confidence            567777777764 22222         11   1345566666553 2333211 0011246677777777753 333322


Q ss_pred             -cccccccchhhhhhhcccccceeeccc--ccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCc
Q 006185          455 -ANLGKKAAAEEMVLYRNRRYQIHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTL  531 (657)
Q Consensus       455 -~~l~~~~~L~~l~l~~~~~l~~~~~~~--~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l  531 (657)
                       ..+..+++|+.|+++++.--    ..+  ...+..+..+++|+.|+++++ +++.+.+. .+..+++|++|+++++ .+
T Consensus       444 ~~~~~~~~~L~~L~Ls~N~l~----~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l  516 (844)
T 3j0a_A          444 DQTPSENPSLEQLFLGENMLQ----LAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPG-VFSHLTALRGLSLNSN-RL  516 (844)
T ss_dssp             SSSSCSCTTCCBCEEESCCCS----SSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTT-SSSSCCSCSEEEEESC-CC
T ss_pred             ccccccCCccccccCCCCccc----cccccccchhhhcCcccccEEECCCC-cccccChh-HccchhhhheeECCCC-CC
Confidence             23444666666666653110    111  111234556667777777665 45554332 3356677777777766 34


Q ss_pred             ceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccC
Q 006185          532 QEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDC  593 (657)
Q Consensus       532 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C  593 (657)
                      +.++..  .            ..++|+.|++++. +++..+ ..     .+++|+.|++.+.
T Consensus       517 ~~l~~~--~------------~~~~L~~L~Ls~N-~l~~~~-~~-----~~~~L~~l~l~~N  557 (844)
T 3j0a_A          517 TVLSHN--D------------LPANLEILDISRN-QLLAPN-PD-----VFVSLSVLDITHN  557 (844)
T ss_dssp             SSCCCC--C------------CCSCCCEEEEEEE-CCCCCC-SC-----CCSSCCEEEEEEE
T ss_pred             CccChh--h------------hhccccEEECCCC-cCCCCC-hh-----HhCCcCEEEecCC
Confidence            444310  0            1256777777763 455544 22     2356667766653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.3e-32  Score=293.94  Aligned_cols=212  Identities=16%  Similarity=0.103  Sum_probs=168.2

Q ss_pred             CCCCCCCC--CCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC--
Q 006185            4 GVELKDWP--SINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS--   77 (657)
Q Consensus         4 ~~~l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--   77 (657)
                      ++.+.+++  .+..+++|++|++++|.++.++.. + .+++|++|++++|.+..+++..|+++++|++|++++|.++.  
T Consensus        35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  114 (549)
T 2z81_A           35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG  114 (549)
T ss_dssp             SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred             CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence            44566653  588999999999999999987753 4 89999999999999999998888999999999999999974  


Q ss_pred             CCccccCCCCCcEEEccCCCCCC-CC-cccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhh
Q 006185           78 PPSSLSFLSNLRTLRLDYCNHLP-DL-SLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLS  154 (657)
Q Consensus        78 lp~~~~~l~~L~~L~l~~~~~~~-~~-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~  154 (657)
                      .|..++++++|++|++++|.... .| ..++++++|++|++++|.++ ..|..++++++|++|+++++ ....+|...+.
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~  193 (549)
T 2z81_A          115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFAD  193 (549)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHH
T ss_pred             hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHh
Confidence            57889999999999999998444 33 68999999999999999998 47888999999999999994 56677776567


Q ss_pred             cCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCcc-----CCCC-CCCCCccEEEEEEc
Q 006185          155 RLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEI-----MPSD-MSLPNLTSFSITIG  224 (657)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~-~~l~~L~~L~l~~~  224 (657)
                      .+++|++|++++|.+.....        ........+++|+.|++.++.+..     ++.. ..+++|+.+++.++
T Consensus       194 ~l~~L~~L~L~~n~l~~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          194 ILSSVRYLELRDTNLARFQF--------SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             STTTBSEEEEESCBCTTCCC--------CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             hcccccEEEccCCccccccc--------cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            89999999999986542100        011223457899999999886521     1111 34566777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-32  Score=308.35  Aligned_cols=521  Identities=17%  Similarity=0.120  Sum_probs=342.7

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC-CCC-CccccCCCCCcEEEccCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM-VSP-PSSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-~~l-p~~~~~l~~L~~L~l~~~~   97 (657)
                      +..+.+++.++.+|.  ..+++++|++++|.+..+++..|.++++|++|++++|.. ..+ |..|.++++|++|++++|.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            578899999999998  567999999999999977766789999999999999954 556 7889999999999999999


Q ss_pred             CCC-CCcccCCCCCCCEEEeeCCCCCc-cccc--ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185           98 HLP-DLSLIGELSGLEILDLSKSDVNE-IPVS--FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        98 ~~~-~~~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      ... .|..++++++|++|++++|.++. +|..  ++++++|++|++++|...+..+...++++++|++|++++|.+..  
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~--  162 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--  162 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC--
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe--
Confidence            544 47899999999999999999984 5655  99999999999999654444343448999999999999997643  


Q ss_pred             ccccccccccchhhhcCC--CCccEEEeecCCCcc-CCCC-CCCC------CccEEEEEEcCccChhhHHHHHhhccccc
Q 006185          174 ESEEDTRSNAKFIELGAL--SRLTSLHIDIPKGEI-MPSD-MSLP------NLTSFSITIGEEDTLNDFIELFLENFNKR  243 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~-~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  243 (657)
                               ..+..+..+  ++|+.|+++.|.... .+.. ..++      .|+.|+++++.-..  .....+...+...
T Consensus       163 ---------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~~  231 (844)
T 3j0a_A          163 ---------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV--DITGNFSNAISKS  231 (844)
T ss_dssp             ---------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST--TTTSGGGGTSCSC
T ss_pred             ---------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch--hHHHHHHhhcCcc
Confidence                     334445555  799999999988643 2222 2233      38999998663111  1111122233345


Q ss_pred             CcceEEeecc--------cchhhhHH-HHHHH-HccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeec
Q 006185          244 CSRAMGLSQD--------MRISALHS-WIKNL-LLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNS  313 (657)
Q Consensus       244 ~l~~l~l~~~--------~~~~~l~~-~~~~~-~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~  313 (657)
                      .+..+.+..+        ..+..... .+... .++|+.|+++++. +....+.. ...+++|+.|++++| .+..++..
T Consensus       232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~  308 (844)
T 3j0a_A          232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRV-FETLKDLKVLNLAYN-KINKIADE  308 (844)
T ss_dssp             CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCC-SSSCCCCCEEEEESC-CCCEECTT
T ss_pred             cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhh-hhcCCCCCEEECCCC-cCCCCChH
Confidence            5566655421        11111111 11111 1578888887763 33333321 235788888888888 55554433


Q ss_pred             cccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeee
Q 006185          314 LERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVF  393 (657)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~  393 (657)
                          .+..+++|+.|+++++. ++.+..  .....+++|+.|+++++ .+..+.+.. +..+++|++|+++++. ++.+ 
T Consensus       309 ----~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i-  377 (844)
T 3j0a_A          309 ----AFYGLDNLQVLNLSYNL-LGELYS--SNFYGLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDNA-LTTI-  377 (844)
T ss_dssp             ----TTTTCSSCCEEEEESCC-CSCCCS--CSCSSCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETCC-SCCC-
T ss_pred             ----HhcCCCCCCEEECCCCC-CCccCH--HHhcCCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCCC-CCcc-
Confidence                23357788888888775 222111  12336778888888885 455544333 2567888888888742 3222 


Q ss_pred             ecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCccccccc-ccccccccchhhhhhhccc
Q 006185          394 EIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVF-PANLGKKAAAEEMVLYRNR  472 (657)
Q Consensus       394 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~-~~~l~~~~~L~~l~l~~~~  472 (657)
                                  ..+++|+.|.++++ .++.++..      ..+++.|+++++ +++.+. +..+..+++|+.|+++++.
T Consensus       378 ------------~~~~~L~~L~l~~N-~l~~l~~~------~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          378 ------------HFIPSIPDIFLSGN-KLVTLPKI------NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR  437 (844)
T ss_dssp             ------------SSCCSCSEEEEESC-CCCCCCCC------CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred             ------------cCCCCcchhccCCC-Cccccccc------ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc
Confidence                        33778888888875 35554321      467788888875 444432 2234567788888887642


Q ss_pred             ccceeecccccC-CCCCCCCCCccEEEEecCCCcceecc----cchhhcccCCcEEEEecCCCcceeeeCcCceecccCC
Q 006185          473 RYQIHIHATTST-SSPTPSLGNLVSITIRGCGKLRNLFT----TSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGA  547 (657)
Q Consensus       473 ~l~~~~~~~~~~-~~~~~~~~~L~~L~i~~c~~L~~l~~----~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~  547 (657)
                             +.... ......+++|+.|+++++. ++...+    ...+..+++|++|+++++ .++.++.           
T Consensus       438 -------l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-----------  497 (844)
T 3j0a_A          438 -------FSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP-----------  497 (844)
T ss_dssp             -------CCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT-----------
T ss_pred             -------ccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCC-cccccCh-----------
Confidence                   11111 1123346788888888864 332211    122456788888888887 3554432           


Q ss_pred             CcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEecccee
Q 006185          548 STKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKY  620 (657)
Q Consensus       548 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~  620 (657)
                       .....+++|+.|+++++ +++.++ .+..    .++|+.|+++++ +++.++...  + .+|+.|++.+.|.
T Consensus       498 -~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~----~~~L~~L~Ls~N-~l~~~~~~~--~-~~L~~l~l~~Np~  559 (844)
T 3j0a_A          498 -GVFSHLTALRGLSLNSN-RLTVLS-HNDL----PANLEILDISRN-QLLAPNPDV--F-VSLSVLDITHNKF  559 (844)
T ss_dssp             -TSSSSCCSCSEEEEESC-CCSSCC-CCCC----CSCCCEEEEEEE-CCCCCCSCC--C-SSCCEEEEEEECC
T ss_pred             -hHccchhhhheeECCCC-CCCccC-hhhh----hccccEEECCCC-cCCCCChhH--h-CCcCEEEecCCCc
Confidence             12235789999999985 788887 5544    289999999986 566555433  3 4688999987663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-30  Score=287.24  Aligned_cols=532  Identities=15%  Similarity=0.116  Sum_probs=309.7

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEEEccCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~~   98 (657)
                      ++.+.++.++++||..+. +++++|++++|.+..+++..|.++++|++|+|++|+++.+|. +|.++++|++|+|++|..
T Consensus        34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            345666666777776442 367777777777777776667777777777777777776643 567777777777777774


Q ss_pred             CCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCC--CchhHhhcCccCcEEEcccCccccccc
Q 006185           99 LPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLEL--IPPGVLSRLRKLEELYMSHSFCHWQFE  174 (657)
Q Consensus        99 ~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~  174 (657)
                      ...| ..|+++++|++|++++|.++.+|.. ++++++|++|++++|. +..  .|.. ++.+++|++|++++|.+.....
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccccccc
Confidence            4444 4567777777777777777766653 6777777777777743 332  3333 6677777777777775532100


Q ss_pred             cccccccccchhhhcCCC-CccEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeec
Q 006185          175 SEEDTRSNAKFIELGALS-RLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQ  252 (657)
Q Consensus       175 g~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~  252 (657)
                              .....+..++ ....++++.+.+..++.. .....+..+.+..+.. .. .........+.......+.+..
T Consensus       191 --------~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~-~~-~~~~~~~~~l~~l~~~~l~~~~  260 (635)
T 4g8a_A          191 --------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD-SL-NVMKTCIQGLAGLEVHRLVLGE  260 (635)
T ss_dssp             --------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS-SH-HHHHHHHHTTTTCEEEEEEEEC
T ss_pred             --------ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc-cc-cccchhhcCCcccccccccccc
Confidence                    1122223322 223556666665555443 3333445555554311 10 1111111111111111111111


Q ss_pred             c---cchhhhHHHHHHHHccccEEEEeeccc--cccccccccccccccceEEEeecCCCceEEeeccccccccccccccE
Q 006185          253 D---MRISALHSWIKNLLLRSEILALIEVND--LENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEW  327 (657)
Q Consensus       253 ~---~~~~~l~~~~~~~~~~L~~L~L~~~~~--l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~  327 (657)
                      .   ..+.............+....+.....  ....... ....+.+++.+.+.++ .+..+.+      .....+|+.
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~-~~~~~~~------~~~~~~L~~  332 (635)
T 4g8a_A          261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSV-TIERVKD------FSYNFGWQH  332 (635)
T ss_dssp             CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESC-EEEECGG------GGSCCCCSE
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcccccchhh-hhhhhccccccccccc-ccccccc------cccchhhhh
Confidence            1   011100000011113344444433211  1011111 1134667777777776 3333222      223567888


Q ss_pred             EeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccccccc
Q 006185          328 LFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETEL  407 (657)
Q Consensus       328 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  407 (657)
                      |++.++.      ...++...++.|+.+.+.+... ..... .  ..+++|+.+++++... .....      .+.....
T Consensus       333 L~l~~~~------~~~~~~~~l~~L~~l~l~~n~~-~~~~~-~--~~l~~L~~L~ls~n~l-~~~~~------~~~~~~~  395 (635)
T 4g8a_A          333 LELVNCK------FGQFPTLKLKSLKRLTFTSNKG-GNAFS-E--VDLPSLEFLDLSRNGL-SFKGC------CSQSDFG  395 (635)
T ss_dssp             EEEESCE------ESSCCCCBCTTCCEEEEESCCS-CCBCC-C--CBCTTCCEEECCSSCC-BEEEE------CCHHHHS
T ss_pred             hhccccc------ccCcCcccchhhhhcccccccC-CCCcc-c--ccccccccchhhcccc-ccccc------cccchhh
Confidence            8888775      2233445678888888887543 22222 1  2578888888877432 11110      1233446


Q ss_pred             CCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCC
Q 006185          408 FSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSP  487 (657)
Q Consensus       408 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~  487 (657)
                      ..+|+.+++..+.... +   ......+++|+.+++.++.......+..+..+++++.++++.+       .+....+..
T Consensus       396 ~~~L~~L~~~~~~~~~-~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-------~l~~~~~~~  464 (635)
T 4g8a_A          396 TISLKYLDLSFNGVIT-M---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-------HTRVAFNGI  464 (635)
T ss_dssp             CSCCCEEECCSCSEEE-E---CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-------CCEECCTTT
T ss_pred             hhhhhhhhcccccccc-c---cccccccccccchhhhhcccccccccccccccccccccccccc-------ccccccccc
Confidence            6788888887764322 2   2223457888888888877666666667777788877777753       222233455


Q ss_pred             CCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCC
Q 006185          488 TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGS  567 (657)
Q Consensus       488 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  567 (657)
                      +..+++|+.|+++++.......+. .+..+++|++|++++|. ++.++.            .....+++|+.|+++++ +
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~------------~~f~~l~~L~~L~Ls~N-~  529 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSHN-N  529 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTTS-C
T ss_pred             cccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcCh------------HHHcCCCCCCEEECCCC-c
Confidence            667899999999998866655343 45789999999999984 666642            12225889999999995 7


Q ss_pred             ccccccCCCcceeeccccceeeeccCCCcceec-CCCccccceeceeEeccce
Q 006185          568 LTCFSSSGLHATVEFLALEALQIIDCPGMKTFG-YGNQLTPKLLKGVEFGYCK  619 (657)
Q Consensus       568 l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp-~~~~~l~~~L~~L~i~~C~  619 (657)
                      ++.++.....   .+++|+.|+++++ +++.++ ..+..+|++|+.|+++++|
T Consensus       530 l~~l~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          530 FFSLDTFPYK---CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CCBCCCGGGT---TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCCChhHHh---CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            8887623333   5799999999997 566554 5555677889999998776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.6e-30  Score=276.48  Aligned_cols=460  Identities=16%  Similarity=0.113  Sum_probs=306.1

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~   98 (657)
                      ++|++++|.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++|+++.+ |..|+++++|++|++++|..
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence            689999999999998766 8999999999999988877789999999999999999876 77999999999999999985


Q ss_pred             CCCCcccCCCCCCCEEEeeCCCCCc--ccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC--cEEEcccCccccccc
Q 006185           99 LPDLSLIGELSGLEILDLSKSDVNE--IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL--EELYMSHSFCHWQFE  174 (657)
Q Consensus        99 ~~~~~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L--~~L~l~~~~~~~~~~  174 (657)
                      ...|..  .+++|++|++++|.++.  +|..++++++|++|++++|. +..   ..+..+++|  ++|++++|.+..  .
T Consensus        82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~--~  153 (520)
T 2z7x_B           82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYG--E  153 (520)
T ss_dssp             CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTT--S
T ss_pred             eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccc--c
Confidence            545554  89999999999999985  67899999999999999954 443   227788888  999999986511  1


Q ss_pred             cccccccccchhhhcCCCC-ccEEEeecCCC-ccCCCC--CCCCCccEEEEEEcC-ccChhhHHHHHhhcccccCcceEE
Q 006185          175 SEEDTRSNAKFIELGALSR-LTSLHIDIPKG-EIMPSD--MSLPNLTSFSITIGE-EDTLNDFIELFLENFNKRCSRAMG  249 (657)
Q Consensus       175 g~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~-~~~~~~--~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l~  249 (657)
                      +       ..+..+..+.. .-.+++.++.. +.++..  ..+++|+.+++.++. ...+..+.+.++.-...+.++.++
T Consensus       154 ~-------~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~  226 (520)
T 2z7x_B          154 K-------EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT  226 (520)
T ss_dssp             S-------CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred             c-------cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence            1       44555555553 22344555554 223332  567889999998763 122334555555333448888888


Q ss_pred             eecccchhhhHHHHHHH--HccccEEEEeeccccc-ccccccc---ccccccceEEEeecCCCceEEeeccccccccccc
Q 006185          250 LSQDMRISALHSWIKNL--LLRSEILALIEVNDLE-NIFSNLA---NDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLR  323 (657)
Q Consensus       250 l~~~~~~~~l~~~~~~~--~~~L~~L~L~~~~~l~-~~~~~l~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  323 (657)
                      +..+.--...+..+...  .++|+.|+++++. +. ..+..+.   ...+++|+.++++++. + .++..... ....-.
T Consensus       227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~~~~-~~~~~~  302 (520)
T 2z7x_B          227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQSYIY-EIFSNM  302 (520)
T ss_dssp             EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTHHHH-HHHHTC
T ss_pred             ccccccCHHHHHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccc-e-ecchhhhh-cccccC
Confidence            88763322222222211  2589999998884 33 2222220   1357888888888883 3 23211000 000115


Q ss_pred             cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccc
Q 006185          324 KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKE  403 (657)
Q Consensus       324 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  403 (657)
                      +|+.|+++++. +..    ....+.+++|++|++++|. +++..|..+ ..+++|++|+++++. ++.+.      ..+.
T Consensus       303 ~L~~L~l~~n~-l~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~------~~~~  368 (520)
T 2z7x_B          303 NIKNFTVSGTR-MVH----MLCPSKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMNQ-LKELS------KIAE  368 (520)
T ss_dssp             CCSEEEEESSC-CCC----CCCCSSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSSC-CCBHH------HHHH
T ss_pred             ceeEEEcCCCc-ccc----ccchhhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCCc-cCccc------cchH
Confidence            68888888875 221    1111467888899988864 444445443 578888888888853 22210      0134


Q ss_pred             ccccCCcccEEecCCCcCccc-ccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccc
Q 006185          404 ETELFSSLEKLTLIDLPRMTD-IWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATT  482 (657)
Q Consensus       404 ~~~~~~~L~~L~l~~c~~L~~-l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~  482 (657)
                      .+..+++|+.|+++++. ++. ++..  ....+++|++|++++|. ++...|..                          
T Consensus       369 ~~~~l~~L~~L~Ls~N~-l~~~l~~~--~~~~l~~L~~L~Ls~N~-l~~~~~~~--------------------------  418 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNS-VSYDEKKG--DCSWTKSLLSLNMSSNI-LTDTIFRC--------------------------  418 (520)
T ss_dssp             HHTTCTTCCEEECCSSC-CBCCGGGC--SCCCCTTCCEEECCSSC-CCGGGGGS--------------------------
T ss_pred             HHhhCCCCCEEECCCCc-CCcccccc--hhccCccCCEEECcCCC-CCcchhhh--------------------------
Confidence            45678888888888865 443 4322  13346788888888874 32221211                          


Q ss_pred             cCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEc
Q 006185          483 STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKL  562 (657)
Q Consensus       483 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l  562 (657)
                           +  .++|+.|++++| +++.+ +..+ ..+++|++|++++|. ++.++..            ....+++|+.|++
T Consensus       419 -----l--~~~L~~L~Ls~N-~l~~i-p~~~-~~l~~L~~L~L~~N~-l~~l~~~------------~~~~l~~L~~L~l  475 (520)
T 2z7x_B          419 -----L--PPRIKVLDLHSN-KIKSI-PKQV-VKLEALQELNVASNQ-LKSVPDG------------IFDRLTSLQKIWL  475 (520)
T ss_dssp             -----C--CTTCCEEECCSS-CCCCC-CGGG-GGCTTCCEEECCSSC-CCCCCTT------------TTTTCTTCCEEEC
T ss_pred             -----h--cccCCEEECCCC-ccccc-chhh-hcCCCCCEEECCCCc-CCccCHH------------HhccCCcccEEEC
Confidence                 1  167888888887 46655 3333 478899999998874 6666422            1124788999999


Q ss_pred             CcCC
Q 006185          563 CDLG  566 (657)
Q Consensus       563 ~~c~  566 (657)
                      ++.+
T Consensus       476 ~~N~  479 (520)
T 2z7x_B          476 HTNP  479 (520)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            8865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=4.9e-31  Score=290.06  Aligned_cols=354  Identities=14%  Similarity=0.158  Sum_probs=201.9

Q ss_pred             ccCCCC-CCCCCcEEEecCCcCcC------------------CCchhhc--CCCCccEEEecCCcC-CCCCccccCCCCC
Q 006185           31 EVPDGL-ECPKLQALFLQKNHLLV------------------IPDPFFQ--GMKDLKVLDLGGIRM-VSPPSSLSFLSNL   88 (657)
Q Consensus        31 ~l~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~Lr~L~L~~~~~-~~lp~~~~~l~~L   88 (657)
                      .+|+.+ ++++|++|++++|.+..                  +|+.+ +  ++++|++|++++|.+ ..+|..++++++|
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            355555 67778888887777775                  67663 5  777888888887775 4577777778888


Q ss_pred             cEEEccCCC-CC--CCCcccCCC------CCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           89 RTLRLDYCN-HL--PDLSLIGEL------SGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        89 ~~L~l~~~~-~~--~~~~~~~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      ++|++++|. ..  ..|..++++      ++|++|++++|.++.+|.  .++++++|++|++++|...+.+| . +++++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence            888888776 33  245666655      778888888877777777  77778888888887754444777 3 77777


Q ss_pred             cCcEEEcccCccccccccccccccccchhhhcCCCC-ccEEEeecCCCccCCCC-C--CCCCccEEEEEEcCccChhhHH
Q 006185          158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR-LTSLHIDIPKGEIMPSD-M--SLPNLTSFSITIGEEDTLNDFI  233 (657)
Q Consensus       158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~-~--~l~~L~~L~l~~~~~~~~~~~~  233 (657)
                      +|++|++++|.+.            ..+..+..+++ |+.|++++|.+..+|.. .  .+++|+.|+++++.      +.
T Consensus       354 ~L~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~------l~  415 (636)
T 4eco_A          354 KLASLNLAYNQIT------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE------IG  415 (636)
T ss_dssp             EESEEECCSSEEE------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC------TT
T ss_pred             CCCEEECCCCccc------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc------CC
Confidence            8888887777553            44556777777 88888888777766665 2  23467777776653      11


Q ss_pred             HHHhhccc--------ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCC
Q 006185          234 ELFLENFN--------KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCN  305 (657)
Q Consensus       234 ~~~~~~~~--------~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~  305 (657)
                      +..++.+.        ...++.++++++ .+..+|..+..                          .+++|++|++++| 
T Consensus       416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~--------------------------~l~~L~~L~Ls~N-  467 (636)
T 4eco_A          416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFS--------------------------TGSPLSSINLMGN-  467 (636)
T ss_dssp             TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHH--------------------------TTCCCSEEECCSS-
T ss_pred             CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHc--------------------------cCCCCCEEECCCC-
Confidence            11122121        123444444443 22233333333                          2455555555555 


Q ss_pred             CceEEeecccccc---ccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEE
Q 006185          306 EMKCLLNSLERTQ---RVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLM  382 (657)
Q Consensus       306 ~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~  382 (657)
                      .+..++.......   ...+++|+.|+++++. ++.+. ..+....+++|++|+++++ .++. +|..+ ..+++|++|+
T Consensus       468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~-~~l~~L~~L~  542 (636)
T 4eco_A          468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLS-DDFRATTLPYLVGIDLSYN-SFSK-FPTQP-LNSSTLKGFG  542 (636)
T ss_dssp             CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCC-GGGSTTTCTTCCEEECCSS-CCSS-CCCGG-GGCSSCCEEE
T ss_pred             CCCCcCHHHhccccccccccCCccEEECcCCc-CCccC-hhhhhccCCCcCEEECCCC-CCCC-cChhh-hcCCCCCEEE
Confidence            3333333221100   1112266666666653 22111 0010114566666666664 3444 44443 3566777777


Q ss_pred             EcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCc
Q 006185          383 VESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECD  447 (657)
Q Consensus       383 l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~  447 (657)
                      ++++..+.. ..+.+  ..|..+..+++|++|+++++. ++.++..     -+++|++|++++++
T Consensus       543 Ls~N~~ls~-N~l~~--~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-----~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          543 IRNQRDAQG-NRTLR--EWPEGITLCPSLTQLQIGSND-IRKVNEK-----ITPNISVLDIKDNP  598 (636)
T ss_dssp             CCSCBCTTC-CBCCC--CCCTTGGGCSSCCEEECCSSC-CCBCCSC-----CCTTCCEEECCSCT
T ss_pred             CCCCccccc-Ccccc--cChHHHhcCCCCCEEECCCCc-CCccCHh-----HhCcCCEEECcCCC
Confidence            754331100 00000  014555666777777777654 3554322     13667777777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=6.3e-31  Score=289.23  Aligned_cols=415  Identities=13%  Similarity=0.147  Sum_probs=221.6

Q ss_pred             CCccEEEccCCCcc-ccCCCC-CCCCCcEEEecCCcCc-------------CCCchhh----------------------
Q 006185           17 EDLTGISLMFNDIH-EVPDGL-ECPKLQALFLQKNHLL-------------VIPDPFF----------------------   59 (657)
Q Consensus        17 ~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~-------------~~~~~~~----------------------   59 (657)
                      .+++.|+++++.+. .+|+.+ .+++|++|++++|.+.             .+|...+                      
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            57889999999987 778777 8999999999988541             0110000                      


Q ss_pred             -----------------cCCCCccEEEec--CCcCCCCCccccCCCCCcEEEccCCCCCC------------------CC
Q 006185           60 -----------------QGMKDLKVLDLG--GIRMVSPPSSLSFLSNLRTLRLDYCNHLP------------------DL  102 (657)
Q Consensus        60 -----------------~~l~~Lr~L~L~--~~~~~~lp~~~~~l~~L~~L~l~~~~~~~------------------~~  102 (657)
                                       .....++.+.+.  +|+++.+|..++++++|++|++++|....                  .|
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                             000001111111  23343456666666666666666666444                  45


Q ss_pred             cccC--CCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCC--CCchhHhhcC------ccCcEEEcccCcccc
Q 006185          103 SLIG--ELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLE--LIPPGVLSRL------RKLEELYMSHSFCHW  171 (657)
Q Consensus       103 ~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~--~~~~~~~~~l------~~L~~L~l~~~~~~~  171 (657)
                      ..++  ++++|++|++++|.+. .+|..++++++|++|++++|..++  .+|.. ++++      ++|++|++++|.+. 
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-
Confidence            5655  6666666666666543 556666666666666666644233  35554 4444      66666666666443 


Q ss_pred             ccccccccccccchh--hhcCCCCccEEEeecCCCc-cCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185          172 QFESEEDTRSNAKFI--ELGALSRLTSLHIDIPKGE-IMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM  248 (657)
Q Consensus       172 ~~~g~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  248 (657)
                                 ..+.  .++.+++|+.|++++|.+. .+|....+++|+.|+++++.-.                     
T Consensus       319 -----------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~---------------------  366 (636)
T 4eco_A          319 -----------TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT---------------------  366 (636)
T ss_dssp             -----------SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE---------------------
T ss_pred             -----------ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc---------------------
Confidence                       2333  5566666666666666654 5553344455555555543111                     


Q ss_pred             EeecccchhhhHHHHHHHHcc-ccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccc--ccccccccc
Q 006185          249 GLSQDMRISALHSWIKNLLLR-SEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLER--TQRVTLRKL  325 (657)
Q Consensus       249 ~l~~~~~~~~l~~~~~~~~~~-L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~L  325 (657)
                               .+|.++... ++ |+.|+++++. ++.++..+....+++|++|++++|.-....+.....  ...-.+++|
T Consensus       367 ---------~lp~~l~~l-~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          367 ---------EIPANFCGF-TEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             ---------ECCTTSEEE-CTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred             ---------cccHhhhhh-cccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence                     111111111 34 5666665553 333332222223446777777776322111111110  000134577


Q ss_pred             cEEeccccccccccccccCCCC---CCCCccEEEEecCCCcccccchhHHHh-------cccCcEEEEcccccceeeeec
Q 006185          326 EWLFIRENQNFVEICHGQLPAG---CLSNVKRLDVVGCGSMLKILPSHLVQS-------FQNLQRLMVESCELLVSVFEI  395 (657)
Q Consensus       326 ~~L~l~~~~~l~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~p~~~~~~-------~~~L~~L~l~~c~~l~~~~~~  395 (657)
                      +.|+++++. ++     .+|..   .+++|++|+++++. ++. +|...+..       +++|++|+++++ .++.+   
T Consensus       436 ~~L~Ls~N~-l~-----~lp~~~~~~l~~L~~L~Ls~N~-l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l---  503 (636)
T 4eco_A          436 SSINLSNNQ-IS-----KFPKELFSTGSPLSSINLMGNM-LTE-IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL---  503 (636)
T ss_dssp             EEEECCSSC-CC-----SCCTHHHHTTCCCSEEECCSSC-CSB-CCSSSSEETTEECTTGGGCCEEECCSS-CCCBC---
T ss_pred             CEEECcCCc-cC-----cCCHHHHccCCCCCEEECCCCC-CCC-cCHHHhccccccccccCCccEEECcCC-cCCcc---
Confidence            777777764 22     23332   46778888887753 444 33332221       238888888875 33333   


Q ss_pred             ccccccccccc--cCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccc
Q 006185          396 ERVNIAKEETE--LFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRR  473 (657)
Q Consensus       396 ~~~~~~~~~~~--~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~  473 (657)
                            |..+.  .+++|+.|+++++. ++.+   +.....+++|++|+++++..+..                      
T Consensus       504 ------p~~~~~~~l~~L~~L~Ls~N~-l~~i---p~~~~~l~~L~~L~Ls~N~~ls~----------------------  551 (636)
T 4eco_A          504 ------SDDFRATTLPYLVGIDLSYNS-FSKF---PTQPLNSSTLKGFGIRNQRDAQG----------------------  551 (636)
T ss_dssp             ------CGGGSTTTCTTCCEEECCSSC-CSSC---CCGGGGCSSCCEEECCSCBCTTC----------------------
T ss_pred             ------ChhhhhccCCCcCEEECCCCC-CCCc---ChhhhcCCCCCEEECCCCccccc----------------------
Confidence                  45554  78888888888853 5544   33344678888888876542111                      


Q ss_pred             cceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCC
Q 006185          474 YQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCP  529 (657)
Q Consensus       474 l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  529 (657)
                          ..+....|..+..+++|+.|++++|. ++.++ ..+   .++|+.|++++++
T Consensus       552 ----N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip-~~~---~~~L~~L~Ls~N~  598 (636)
T 4eco_A          552 ----NRTLREWPEGITLCPSLTQLQIGSND-IRKVN-EKI---TPNISVLDIKDNP  598 (636)
T ss_dssp             ----CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCC-SCC---CTTCCEEECCSCT
T ss_pred             ----CcccccChHHHhcCCCCCEEECCCCc-CCccC-HhH---hCcCCEEECcCCC
Confidence                01111123344456677777776664 35542 222   2677777777765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=280.94  Aligned_cols=462  Identities=17%  Similarity=0.126  Sum_probs=307.2

Q ss_pred             cEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCC
Q 006185           42 QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKS  119 (657)
Q Consensus        42 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~  119 (657)
                      ++|++++|.+..+|..++   ++|++|++++|.++.++ ..|.++++|++|++++|..... |..++++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            689999999999998763   89999999999998876 6899999999999999995444 688999999999999999


Q ss_pred             CCCcccccccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCc--cE
Q 006185          120 DVNEIPVSFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRL--TS  196 (657)
Q Consensus       120 ~i~~lp~~i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L--~~  196 (657)
                      .++.+|..  .+++|++|++++|...+ .+|.. ++++++|++|++++|.+..              ..+..+++|  +.
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~  142 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNISK  142 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCEEE
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch--------------hhccccccceeeE
Confidence            99999987  89999999999965433 35555 8999999999999987542              335566666  99


Q ss_pred             EEeecCCC--c-cCCCCCCCCCcc--EEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHcccc
Q 006185          197 LHIDIPKG--E-IMPSDMSLPNLT--SFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSE  271 (657)
Q Consensus       197 L~l~~~~~--~-~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~  271 (657)
                      |++++|.+  . ..+..  +..|+  .+.+... +...                          ...+++.....+++|+
T Consensus       143 L~l~~n~l~~~~~~~~~--l~~l~~~~l~l~l~-~n~~--------------------------~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEG--LQDFNTESLHIVFP-TNKE--------------------------FHFILDVSVKTVANLE  193 (520)
T ss_dssp             EEEEECTTTTSSCCTTT--TTTCCEEEEEEECC-SSSC--------------------------CCCCCCCCCTTCSEEE
T ss_pred             EEeeccccccccccccc--ccccccceEEEEec-cCcc--------------------------hhhhhhhhhhccccee
Confidence            99999886  2 22322  33333  4444321 1110                          0001111111126788


Q ss_pred             EEEEeecc------ccccccccccccccccceEEEeecCCCceEEeeccccc--cccccccccEEecccccccccccccc
Q 006185          272 ILALIEVN------DLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERT--QRVTLRKLEWLFIRENQNFVEICHGQ  343 (657)
Q Consensus       272 ~L~L~~~~------~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~  343 (657)
                      .++++++.      .+....+.+  ..+++|+.|+++++ .+.   ......  .....++|+.|++++|. +    .+.
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~-~l~---~~~~~~~~~~~~~~~L~~L~l~~n~-l----~~~  262 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNI-ETT---WNSFIRILQLVWHTTVWYFSISNVK-L----QGQ  262 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEE-EEE---HHHHHHHHHHHHTSSCSEEEEEEEE-E----ESC
T ss_pred             eccccccccccccceeecchhhh--ccccchhhcccccc-ccC---HHHHHHHHHHhhhCcccEEEeeccc-c----cCc
Confidence            88887763      123333333  34789999999877 222   110000  11124589999999885 2    222


Q ss_pred             CCC-------CCCCCccEEEEecCCCcccccchhHHHhc---ccCcEEEEcccccceeeeecccccccccccccCCcccE
Q 006185          344 LPA-------GCLSNVKRLDVVGCGSMLKILPSHLVQSF---QNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEK  413 (657)
Q Consensus       344 ~~~-------~~~~~L~~L~l~~c~~l~~~~p~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~  413 (657)
                      +|.       +.+++|+.++++++..  . +|...+..+   ++|++|+++++.- ..+          .....+++|+.
T Consensus       263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~-~p~~~~~~~~~~~~L~~L~l~~n~l-~~~----------~~~~~l~~L~~  328 (520)
T 2z7x_B          263 LDFRDFDYSGTSLKALSIHQVVSDVF--G-FPQSYIYEIFSNMNIKNFTVSGTRM-VHM----------LCPSKISPFLH  328 (520)
T ss_dssp             CCCCCCCCCSCCCCEEEEEEEEECCC--C-SCTHHHHHHHHTCCCSEEEEESSCC-CCC----------CCCSSCCCCCE
T ss_pred             cccchhhcccccCceeEeccccccce--e-cchhhhhcccccCceeEEEcCCCcc-ccc----------cchhhCCcccE
Confidence            332       4678888888888654  3 452222333   5689999988642 211          01146788888


Q ss_pred             EecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCC
Q 006185          414 LTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGN  493 (657)
Q Consensus       414 L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~  493 (657)
                      |+++++. ++...  +.....+++|++|++++|. ++.+..                             .+..+..+++
T Consensus       329 L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~N~-l~~l~~-----------------------------~~~~~~~l~~  375 (520)
T 2z7x_B          329 LDFSNNL-LTDTV--FENCGHLTELETLILQMNQ-LKELSK-----------------------------IAEMTTQMKS  375 (520)
T ss_dssp             EECCSSC-CCTTT--TTTCCCCSSCCEEECCSSC-CCBHHH-----------------------------HHHHHTTCTT
T ss_pred             EEeECCc-cChhh--hhhhccCCCCCEEEccCCc-cCcccc-----------------------------chHHHhhCCC
Confidence            8888864 44311  2233457888888888863 332200                             0112336788


Q ss_pred             ccEEEEecCCCcce-ecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccc
Q 006185          494 LVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFS  572 (657)
Q Consensus       494 L~~L~i~~c~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~  572 (657)
                      |+.|+++++. ++. + +...+..+++|++|++++|.--..++.   +            ..++|+.|+++++ +++.+|
T Consensus       376 L~~L~Ls~N~-l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~------------l~~~L~~L~Ls~N-~l~~ip  437 (520)
T 2z7x_B          376 LQQLDISQNS-VSYDE-KKGDCSWTKSLLSLNMSSNILTDTIFR---C------------LPPRIKVLDLHSN-KIKSIP  437 (520)
T ss_dssp             CCEEECCSSC-CBCCG-GGCSCCCCTTCCEEECCSSCCCGGGGG---S------------CCTTCCEEECCSS-CCCCCC
T ss_pred             CCEEECCCCc-CCccc-ccchhccCccCCEEECcCCCCCcchhh---h------------hcccCCEEECCCC-cccccc
Confidence            8999998875 444 4 333456788999999999863222210   0            1268999999997 688888


Q ss_pred             cCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEeccceeeccCchhHHHHHHH
Q 006185          573 SSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYV  634 (657)
Q Consensus       573 ~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~l~~~~l~~~l~~~~  634 (657)
                       .+..   .+++|++|++++| +++.+|.. +..+ ++|++|++++++.--..++.+.++.+.
T Consensus       438 -~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~l~~N~~~c~c~~~~~~~~~~  494 (520)
T 2z7x_B          438 -KQVV---KLEALQELNVASN-QLKSVPDGIFDRL-TSLQKIWLHTNPWDCSCPRIDYLSRWL  494 (520)
T ss_dssp             -GGGG---GCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred             -hhhh---cCCCCCEEECCCC-cCCccCHHHhccC-CcccEEECcCCCCcccCCchHHHHHHH
Confidence             6655   5899999999998 78889976 4444 678999999988443333334334433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=8.9e-30  Score=284.39  Aligned_cols=453  Identities=14%  Similarity=0.120  Sum_probs=267.1

Q ss_pred             CCccEEEccCCCcc-ccCCCC-CCCCCcEEEe-cCCcCc-CCCchh----------------------------------
Q 006185           17 EDLTGISLMFNDIH-EVPDGL-ECPKLQALFL-QKNHLL-VIPDPF----------------------------------   58 (657)
Q Consensus        17 ~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l-~~~~~~-~~~~~~----------------------------------   58 (657)
                      ..++.|+|+++.+. .+|+.+ .+++|++|++ ++|.+. ..+...                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57889999999987 788777 8999999999 666543 111000                                  


Q ss_pred             --------------h--cCCCCccEEEecC--CcCCCCCccccCCCCCcEEEccCCCCCC------------------CC
Q 006185           59 --------------F--QGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLP------------------DL  102 (657)
Q Consensus        59 --------------~--~~l~~Lr~L~L~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~------------------~~  102 (657)
                                    .  .....++.+.+..  |+++.+|..++++++|++|++++|....                  .|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                          0  0111122222222  4444478888888888888888888555                  67


Q ss_pred             cccC--CCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCC--CCchhHhhcCc-------cCcEEEcccCccc
Q 006185          103 SLIG--ELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLE--LIPPGVLSRLR-------KLEELYMSHSFCH  170 (657)
Q Consensus       103 ~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~--~~~~~~~~~l~-------~L~~L~l~~~~~~  170 (657)
                      ..++  ++++|++|++++|.+. .+|..++++++|++|++++|..++  .+|.. +++++       +|++|++++|.+.
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC
Confidence            7777  8888888888888754 788888888888888888865344  46765 56665       8888888888654


Q ss_pred             cccccccccccccchh--hhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185          171 WQFESEEDTRSNAKFI--ELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM  248 (657)
Q Consensus       171 ~~~~g~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  248 (657)
                                  .++.  .++++++|+.|++++|.+..+|....+++|+.|+++++.                       
T Consensus       562 ------------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~-----------------------  606 (876)
T 4ecn_A          562 ------------EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-----------------------  606 (876)
T ss_dssp             ------------BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC-----------------------
T ss_pred             ------------ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc-----------------------
Confidence                        3455  688888888888888887777744555666666655431                       


Q ss_pred             EeecccchhhhHHHHHHHHccccEEEEeecccccccccccccccccc-ceEEEeecCCCceEEeeccccccccccccccE
Q 006185          249 GLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNE-LMFLYIFGCNEMKCLLNSLERTQRVTLRKLEW  327 (657)
Q Consensus       249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~  327 (657)
                                                      +..++..+  ..+++ |+.|++++| .+..++....   ....++|+.
T Consensus       607 --------------------------------l~~lp~~l--~~l~~~L~~L~Ls~N-~L~~lp~~~~---~~~~~~L~~  648 (876)
T 4ecn_A          607 --------------------------------IEEIPEDF--CAFTDQVEGLGFSHN-KLKYIPNIFN---AKSVYVMGS  648 (876)
T ss_dssp             --------------------------------CSCCCTTS--CEECTTCCEEECCSS-CCCSCCSCCC---TTCSSCEEE
T ss_pred             --------------------------------cccchHHH--hhccccCCEEECcCC-CCCcCchhhh---ccccCCCCE
Confidence                                            11111111  12445 555555555 3333332211   111233666


Q ss_pred             EeccccccccccccccCC-----CC--CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccc
Q 006185          328 LFIRENQNFVEICHGQLP-----AG--CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNI  400 (657)
Q Consensus       328 L~l~~~~~l~~~~~~~~~-----~~--~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  400 (657)
                      |++++|. +    .+.+|     .+  ..++|+.|++++|. ++. +|..++..+++|++|+++++ .++.+...... .
T Consensus       649 L~Ls~N~-l----~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~-~  719 (876)
T 4ecn_A          649 VDFSYNK-I----GSEGRNISCSMDDYKGINASTVTLSYNE-IQK-FPTELFATGSPISTIILSNN-LMTSIPENSLK-P  719 (876)
T ss_dssp             EECCSSC-T----TTTSSSCSSCTTTCCCCCEEEEECCSSC-CCS-CCHHHHHTTCCCSEEECCSC-CCSCCCTTSSS-C
T ss_pred             EECcCCc-C----CCccccchhhhccccCCCcCEEEccCCc-CCc-cCHHHHccCCCCCEEECCCC-cCCccChHHhc-c
Confidence            6666654 1    11111     11  33467777777753 444 55555556777777777774 33333100000 0


Q ss_pred             cccccccCCcccEEecCCCcCcccccCCCCccc--ccCCccEEEeccCcccccccccccccccchhhhhhhcccccceee
Q 006185          401 AKEETELFSSLEKLTLIDLPRMTDIWKGDTQFV--SLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHI  478 (657)
Q Consensus       401 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~--~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~  478 (657)
                      .......+++|+.|++++| +++.++   ....  .+++|+.|++++| +++. .|..+..+++|+.|+++.+..+.. .
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N-~L~~lp---~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~-N  792 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFN-KLTSLS---DDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG-N  792 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSS-CCCCCC---GGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC-C
T ss_pred             ccccccccCCccEEECCCC-CCccch---HHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc-c
Confidence            0000122347777777776 455542   2222  5677777777775 4444 366677777777777765431110 2


Q ss_pred             cccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccC
Q 006185          479 HATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLF  558 (657)
Q Consensus       479 ~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~  558 (657)
                      .+....|..+..+++|+.|++++|. +..++ ..+   .++|+.|++++|+ +..+....  .....  ......+..-+
T Consensus       793 ~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip-~~l---~~~L~~LdLs~N~-l~~i~~~~--~~~~~--~~~~~~L~~n~  862 (876)
T 4ecn_A          793 RILRQWPTGITTCPSLIQLQIGSND-IRKVD-EKL---TPQLYILDIADNP-NISIDVTS--VCPYI--EAGMYVLLYDK  862 (876)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSC-CCBCC-SCC---CSSSCEEECCSCT-TCEEECGG--GHHHH--HTTCCEEECCT
T ss_pred             cccccChHHHhcCCCCCEEECCCCC-CCccC-Hhh---cCCCCEEECCCCC-CCccChHH--ccccc--cchheeecCCC
Confidence            2233446677788999999998876 46653 322   3689999999987 43332110  00000  01111233344


Q ss_pred             eeEcCcCCCcc
Q 006185          559 SIKLCDLGSLT  569 (657)
Q Consensus       559 ~L~l~~c~~l~  569 (657)
                      ..+|.+|+.+.
T Consensus       863 ~~~I~gC~~L~  873 (876)
T 4ecn_A          863 TQDIRGCDALG  873 (876)
T ss_dssp             TSEEESCGGGC
T ss_pred             ccccCCCCCcc
Confidence            45778888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=3.6e-30  Score=287.55  Aligned_cols=358  Identities=13%  Similarity=0.151  Sum_probs=187.7

Q ss_pred             cCCCC-CCCCCcEEEecCCcCcC------------------CCchh-hcCCCCccEEEecCCcC-CCCCccccCCCCCcE
Q 006185           32 VPDGL-ECPKLQALFLQKNHLLV------------------IPDPF-FQGMKDLKVLDLGGIRM-VSPPSSLSFLSNLRT   90 (657)
Q Consensus        32 l~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~-~~~l~~Lr~L~L~~~~~-~~lp~~~~~l~~L~~   90 (657)
                      +|..+ ++++|++|++++|.+..                  +|+.+ |.++++|++|++++|++ ..+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            44444 56667777776666665                  66654 23666777777766664 356666666777777


Q ss_pred             EEccCCCCCC---CCcccCCC-------CCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185           91 LRLDYCNHLP---DLSLIGEL-------SGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK  158 (657)
Q Consensus        91 L~l~~~~~~~---~~~~~~~l-------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~  158 (657)
                      |++++|..++   .|..++++       ++|++|++++|.++.+|.  .++++++|++|++++|. +..+| . ++++++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCc
Confidence            7777665222   34433333       367777777766666666  66667777777776643 44666 2 666667


Q ss_pred             CcEEEcccCccccccccccccccccchhhhcCCCC-ccEEEeecCCCccCCCC-CC--CCCccEEEEEEcCccCh-hhHH
Q 006185          159 LEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR-LTSLHIDIPKGEIMPSD-MS--LPNLTSFSITIGEEDTL-NDFI  233 (657)
Q Consensus       159 L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~-~~--l~~L~~L~l~~~~~~~~-~~~~  233 (657)
                      |++|++++|.+.            ..+..+..+++ |+.|++++|.+..+|.. ..  .++|+.|+++++.-... +.+.
T Consensus       597 L~~L~Ls~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~  664 (876)
T 4ecn_A          597 LTDLKLDYNQIE------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS  664 (876)
T ss_dssp             ESEEECCSSCCS------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred             ceEEECcCCccc------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence            777776666543            34445666666 77777776666655544 11  23366666665421110 0000


Q ss_pred             HHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeec
Q 006185          234 ELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNS  313 (657)
Q Consensus       234 ~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~  313 (657)
                       .....+..                         .+|+.|+++++. +..++..+ ...+++|+.|++++| .+..++..
T Consensus       665 -~~l~~~~~-------------------------~~L~~L~Ls~N~-L~~lp~~~-~~~l~~L~~L~Ls~N-~L~~ip~~  715 (876)
T 4ecn_A          665 -CSMDDYKG-------------------------INASTVTLSYNE-IQKFPTEL-FATGSPISTIILSNN-LMTSIPEN  715 (876)
T ss_dssp             -SCTTTCCC-------------------------CCEEEEECCSSC-CCSCCHHH-HHTTCCCSEEECCSC-CCSCCCTT
T ss_pred             -hhhccccC-------------------------CCcCEEEccCCc-CCccCHHH-HccCCCCCEEECCCC-cCCccChH
Confidence             00000111                         245555555442 22222111 113455666666655 44433333


Q ss_pred             ccccc---ccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccce
Q 006185          314 LERTQ---RVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLV  390 (657)
Q Consensus       314 ~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~  390 (657)
                      .....   ...+++|+.|++++|. ++.+. ..+....+++|+.|++++| .++. +|..+ ..+++|+.|++++++.+.
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp-~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l-~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNK-LTSLS-DDFRATTLPYLSNMDVSYN-CFSS-FPTQP-LNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSC-CCCCC-GGGSTTTCTTCCEEECCSS-CCSS-CCCGG-GGCTTCCEEECCCCBCTT
T ss_pred             HhccccccccccCCccEEECCCCC-Cccch-HHhhhccCCCcCEEEeCCC-CCCc-cchhh-hcCCCCCEEECCCCCCcc
Confidence            22100   1123366666666663 32211 1111124667777777774 3444 34443 467777777776643111


Q ss_pred             eeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCc
Q 006185          391 SVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECD  447 (657)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~  447 (657)
                      .- .+.+  ..|..+..+++|+.|++++|. +..++..     -+++|+.|++++|+
T Consensus       791 ~N-~l~~--~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-----l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          791 GN-RILR--QWPTGITTCPSLIQLQIGSND-IRKVDEK-----LTPQLYILDIADNP  838 (876)
T ss_dssp             CC-BCCC--CCCTTGGGCSSCCEEECCSSC-CCBCCSC-----CCSSSCEEECCSCT
T ss_pred             cc-cccc--cChHHHhcCCCCCEEECCCCC-CCccCHh-----hcCCCCEEECCCCC
Confidence            10 0000  015556667777777777764 3555332     13577777777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2.5e-28  Score=265.75  Aligned_cols=457  Identities=17%  Similarity=0.155  Sum_probs=252.3

Q ss_pred             CCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEc
Q 006185           15 TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRL   93 (657)
Q Consensus        15 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l   93 (657)
                      .+...++++++++.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|+++.+ |..|+++++|++|++
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            34555777787777777776543 6777788877777777766677777888888877777665 566777777777777


Q ss_pred             cCCCCCCCCcccCCCCCCCEEEeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCchhHhhcCccC--cEEEcccCcc
Q 006185           94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL--EELYMSHSFC  169 (657)
Q Consensus        94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L--~~L~l~~~~~  169 (657)
                      ++|...+.|..  .+++|++|++++|.++.+|  ..++++++|++|+++++ .+....   +..+++|  ++|++++|.+
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence            77774444444  6777777777777777543  56777777777777774 333322   4444555  7777777654


Q ss_pred             ccccccccccccccchhhhcCCCCccE--EEeecCCCcc-CCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcccccC
Q 006185          170 HWQFESEEDTRSNAKFIELGALSRLTS--LHIDIPKGEI-MPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRC  244 (657)
Q Consensus       170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~--L~l~~~~~~~-~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  244 (657)
                      ..  .+       ..+..+..+.. +.  +++..|.... ++..  ..+++|+.+++.++.                   
T Consensus       182 ~~--~~-------~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-------------------  232 (562)
T 3a79_B          182 HI--KG-------GETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND-------------------  232 (562)
T ss_dssp             CC--CS-------SSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS-------------------
T ss_pred             cc--cc-------cCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEecccccc-------------------
Confidence            10  01       22333333321 22  2333333321 1111  233444444444321                   


Q ss_pred             cceEEeecccchhhhHHHHHHH--HccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccccccccc
Q 006185          245 SRAMGLSQDMRISALHSWIKNL--LLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTL  322 (657)
Q Consensus       245 l~~l~l~~~~~~~~l~~~~~~~--~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  322 (657)
                               .....++..+...  .++++.+.+.++.--....                      ..++.      ....
T Consensus       233 ---------~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~----------------------~~~~~------~~~~  275 (562)
T 3a79_B          233 ---------ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS----------------------VKLFQ------FFWP  275 (562)
T ss_dssp             ---------TTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH----------------------HHHHH------HHTT
T ss_pred             ---------cccchHHHHHHHHhccCcceEEEecCCcCcHHHH----------------------HHHHH------hhhc
Confidence                     0011111111111  1444444444331100000                      00000      0012


Q ss_pred             ccccEEeccccccccccccccCCC-------CCCCCccEEEEecCCCcccccchhHHHh---cccCcEEEEcccccceee
Q 006185          323 RKLEWLFIRENQNFVEICHGQLPA-------GCLSNVKRLDVVGCGSMLKILPSHLVQS---FQNLQRLMVESCELLVSV  392 (657)
Q Consensus       323 ~~L~~L~l~~~~~l~~~~~~~~~~-------~~~~~L~~L~l~~c~~l~~~~p~~~~~~---~~~L~~L~l~~c~~l~~~  392 (657)
                      ++|++|++++|.     ..+.+|.       +.++.|+.+++.... +  .+|......   ..+|++|+++++.-. .+
T Consensus       276 ~~L~~L~l~~n~-----l~~~ip~~~~~~~~~~L~~L~~~~~~~~~-~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~  346 (562)
T 3a79_B          276 RPVEYLNIYNLT-----ITERIDREEFTYSETALKSLMIEHVKNQV-F--LFSKEALYSVFAEMNIKMLSISDTPFI-HM  346 (562)
T ss_dssp             SSEEEEEEEEEE-----ECSCCCCCCCCCCSCSCCEEEEEEEEECC-C--SSCHHHHHHHHHTCCCSEEEEESSCCC-CC
T ss_pred             ccccEEEEeccE-----eeccccchhhhcccccchheehhhcccce-e--ecChhhhhhhhccCcceEEEccCCCcc-cc
Confidence            355555555553     1222222       223333344444422 2  234222122   256888888875421 11


Q ss_pred             eecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhccc
Q 006185          393 FEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNR  472 (657)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~  472 (657)
                                .....+++|+.|+++++. ++...  +.....+++|++|+++++ +++.+.+                  
T Consensus       347 ----------~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~------------------  394 (562)
T 3a79_B          347 ----------VCPPSPSSFTFLNFTQNV-FTDSV--FQGCSTLKRLQTLILQRN-GLKNFFK------------------  394 (562)
T ss_dssp             ----------CCCSSCCCCCEEECCSSC-CCTTT--TTTCCSCSSCCEEECCSS-CCCBTTH------------------
T ss_pred             ----------cCccCCCCceEEECCCCc-cccch--hhhhcccCCCCEEECCCC-CcCCccc------------------
Confidence                      011456778888888764 33311  223345778888888875 4443311                  


Q ss_pred             ccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceE
Q 006185          473 RYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKI  552 (657)
Q Consensus       473 ~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~  552 (657)
                                 .+..+..+++|+.|+++++. ++...+......+++|++|++++|.--..++             .   
T Consensus       395 -----------~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~---  446 (562)
T 3a79_B          395 -----------VALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVF-------------R---  446 (562)
T ss_dssp             -----------HHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-------------S---
T ss_pred             -----------chhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchh-------------h---
Confidence                       01234467788888887765 4431233345677888888888875222121             0   


Q ss_pred             ec-cccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEecccee
Q 006185          553 TF-PSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKY  620 (657)
Q Consensus       553 ~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~  620 (657)
                      .+ ++|+.|+++++ +++.+| .+..   .+++|++|+++++ +++.+|.. +..+ +.|+.|+++++|.
T Consensus       447 ~l~~~L~~L~L~~N-~l~~ip-~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~l~~N~~  509 (562)
T 3a79_B          447 CLPPKVKVLDLHNN-RIMSIP-KDVT---HLQALQELNVASN-QLKSVPDGVFDRL-TSLQYIWLHDNPW  509 (562)
T ss_dssp             SCCTTCSEEECCSS-CCCCCC-TTTT---SSCCCSEEECCSS-CCCCCCTTSTTTC-TTCCCEECCSCCB
T ss_pred             hhcCcCCEEECCCC-cCcccC-hhhc---CCCCCCEEECCCC-CCCCCCHHHHhcC-CCCCEEEecCCCc
Confidence            13 68999999986 788888 7665   5799999999886 67788876 5454 6689999988874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=1.8e-27  Score=263.86  Aligned_cols=521  Identities=18%  Similarity=0.158  Sum_probs=328.4

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-   80 (657)
                      +.++.++|.- -.+.+++|+|++|.|+.+++..  ++++|++|++++|.+..+++.+|.++++|++|+|++|+++.+|. 
T Consensus        40 ~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           40 ELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             TSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            4578888841 2368999999999999998654  89999999999999999999889999999999999999998875 


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      .|.++++|++|++++|.....+ ..++++++|++|++++|.++  .+|..++++++|++|++++| .++.++...+..+.
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchh
Confidence            6899999999999999955555 56999999999999999987  45788999999999999994 56666554466665


Q ss_pred             cCc----EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC--CCCCCccEEEEEEcCccChh
Q 006185          158 KLE----ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD--MSLPNLTSFSITIGEEDTLN  230 (657)
Q Consensus       158 ~L~----~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~l~~L~~L~l~~~~~~~~~  230 (657)
                      +++    .++++.+.+..            ..........++.+++..+... .+...  ..+..++...+.........
T Consensus       198 ~l~~~~~~~~ls~n~l~~------------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  265 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNF------------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  265 (635)
T ss_dssp             TCTTCCCEEECTTCCCCE------------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             hhhhhhhhhhcccCcccc------------cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence            544    56777665432            1222223334445555444321 00000  22333443333322110000


Q ss_pred             hHHHHHhhccc-ccCcceEEeecc---cchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCC
Q 006185          231 DFIELFLENFN-KRCSRAMGLSQD---MRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNE  306 (657)
Q Consensus       231 ~~~~~~~~~~~-~~~l~~l~l~~~---~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~  306 (657)
                      .........+. ...+....+...   ......+.. .....+++.+.+.++.. .... .+  .....++.|++.++ .
T Consensus       266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~-~~~~-~~--~~~~~L~~L~l~~~-~  339 (635)
T 4g8a_A          266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTI-ERVK-DF--SYNFGWQHLELVNC-K  339 (635)
T ss_dssp             CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEE-EECG-GG--GSCCCCSEEEEESC-E
T ss_pred             ccccccccccccccchhhhhhhhhhhcccccchhhh-hhhhccccccccccccc-cccc-cc--ccchhhhhhhcccc-c
Confidence            00000000000 011111111111   000001111 11125677777766532 1111 11  23567888888887 2


Q ss_pred             ceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc
Q 006185          307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC  386 (657)
Q Consensus       307 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c  386 (657)
                      +..++       ...++.|+.+.+.++..     ....+...+++|+.++++++..............+.+|+.+++..+
T Consensus       340 ~~~~~-------~~~l~~L~~l~l~~n~~-----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~  407 (635)
T 4g8a_A          340 FGQFP-------TLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN  407 (635)
T ss_dssp             ESSCC-------CCBCTTCCEEEEESCCS-----CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred             ccCcC-------cccchhhhhcccccccC-----CCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence            22221       12367788888877652     2233344678899998888543222122222346788888888775


Q ss_pred             ccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhh
Q 006185          387 ELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEM  466 (657)
Q Consensus       387 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l  466 (657)
                      ... .+         +..+..+++|+.+++.++.......  ......+++++.++++++ .+....+..+..+++++.+
T Consensus       408 ~~~-~~---------~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L  474 (635)
T 4g8a_A          408 GVI-TM---------SSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVL  474 (635)
T ss_dssp             SEE-EE---------CSCCTTCTTCCEEECTTSEEESTTS--SCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEE
T ss_pred             ccc-cc---------cccccccccccchhhhhcccccccc--cccccccccccccccccc-ccccccccccccchhhhhh
Confidence            432 22         3345667888888888766544322  223345778888888875 5566667778888888888


Q ss_pred             hhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccC
Q 006185          467 VLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQG  546 (657)
Q Consensus       467 ~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~  546 (657)
                      .+.++....      ...+..+..+++|+.|++++| +++.+.+. .+..+++|++|+++++. ++.++.          
T Consensus       475 ~Ls~N~~~~------~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N~-l~~l~~----------  535 (635)
T 4g8a_A          475 KMAGNSFQE------NFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHNN-FFSLDT----------  535 (635)
T ss_dssp             ECTTCEEGG------GEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTSC-CCBCCC----------
T ss_pred             hhhhccccc------ccCchhhhhccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCCc-CCCCCh----------
Confidence            888753222      123556778889999999887 57776444 34788999999998874 555532          


Q ss_pred             CCcceEeccccCeeEcCcCCCccccccCCCcceeec-cccceeeeccCC
Q 006185          547 ASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEF-LALEALQIIDCP  594 (657)
Q Consensus       547 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~-~sL~~L~i~~C~  594 (657)
                        .....+++|+.|++++. +++.++...+.   .+ ++|+.|++++.|
T Consensus       536 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~---~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          536 --FPYKCLNSLQVLDYSLN-HIMTSKKQELQ---HFPSSLAFLNLTQND  578 (635)
T ss_dssp             --GGGTTCTTCCEEECTTS-CCCBCCSSCTT---CCCTTCCEEECTTCC
T ss_pred             --hHHhCCCCCCEEECCCC-cCCCCCHHHHH---hhhCcCCEEEeeCCC
Confidence              11224788999999984 67776524443   34 689999997644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=2e-28  Score=259.94  Aligned_cols=343  Identities=20%  Similarity=0.233  Sum_probs=220.2

Q ss_pred             CCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEc
Q 006185           14 NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRL   93 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l   93 (657)
                      ..++++++|+++++.+..++....+++|++|++++|.+..+++  |.++++|++|++++|.+..++. ++++++|++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  119 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence            3467889999999988888865588899999999998887776  6889999999999998888776 889999999999


Q ss_pred             cCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185           94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      ++|. ++....++++++|++|++++|.++.+| .++++++|++|++.+  ....++.  +.++++|++|++++|.+.   
T Consensus       120 ~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~---  190 (466)
T 1o6v_A          120 FNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS---  190 (466)
T ss_dssp             CSSC-CCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred             CCCC-CCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence            9988 444444889999999999999888876 488899999999864  3444544  788999999999888653   


Q ss_pred             ccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecc
Q 006185          174 ESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD  253 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  253 (657)
                                ....+..+++|+.|++++|.+..++....+++|+.|++.++.....+.+                     
T Consensus       191 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l---------------------  239 (466)
T 1o6v_A          191 ----------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL---------------------  239 (466)
T ss_dssp             ----------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG---------------------
T ss_pred             ----------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh---------------------
Confidence                      2244778888999999888876555445567777777765422111100                     


Q ss_pred             cchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEecccc
Q 006185          254 MRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIREN  333 (657)
Q Consensus       254 ~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (657)
                                . .+++|+.|+++++. +....+   ...+++|++|++++| .+..++.      ...+++|+.|++++|
T Consensus       240 ----------~-~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~------~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          240 ----------A-SLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGAN-QISNISP------LAGLTALTNLELNEN  297 (466)
T ss_dssp             ----------G-GCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCCCCGG------GTTCTTCSEEECCSS
T ss_pred             ----------h-cCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCC-ccCcccc------ccCCCccCeEEcCCC
Confidence                      0 11456666665552 222222   123566666666666 3332222      223566666666665


Q ss_pred             ccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccE
Q 006185          334 QNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEK  413 (657)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~  413 (657)
                      . +    .+..+.+.+++|+.|++++| .+++..|   +..+++|++|++++| .++.+          ..+..+++|+.
T Consensus       298 ~-l----~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~----------~~l~~l~~L~~  357 (466)
T 1o6v_A          298 Q-L----EDISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV----------SSLANLTNINW  357 (466)
T ss_dssp             C-C----SCCGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC----------GGGTTCTTCCE
T ss_pred             c-c----cCchhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc----------hhhccCCCCCE
Confidence            4 2    22223445566666666664 3333333   135566666666654 22222          12345566666


Q ss_pred             EecCCCcCcccccCCCCcccccCCccEEEeccC
Q 006185          414 LTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEEC  446 (657)
Q Consensus       414 L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C  446 (657)
                      |++++|. ++.+.    +...+++|++|++++|
T Consensus       358 L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          358 LSAGHNQ-ISDLT----PLANLTRITQLGLNDQ  385 (466)
T ss_dssp             EECCSSC-CCBCG----GGTTCTTCCEEECCCE
T ss_pred             EeCCCCc-cCccc----hhhcCCCCCEEeccCC
Confidence            6666553 33321    1334556666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.3e-27  Score=251.74  Aligned_cols=335  Identities=20%  Similarity=0.280  Sum_probs=262.7

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS   83 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~   83 (657)
                      +.+++.+|.+..+++|++|++++|.++.++....+++|++|++++|.+..+++  |.++++|++|++++|.++.++. +.
T Consensus        55 ~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~  131 (466)
T 1o6v_A           55 RLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LK  131 (466)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred             CCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-Hc
Confidence            45678889899999999999999999988874489999999999999998877  7999999999999999998876 89


Q ss_pred             CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185           84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY  163 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~  163 (657)
                      ++++|++|++++|. +.....++++++|++|++++ .+..++. +.++++|++|++++| .+..++.  +.++++|++|+
T Consensus       132 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~  205 (466)
T 1o6v_A          132 NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLI  205 (466)
T ss_dssp             TCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEE
T ss_pred             CCCCCCEEECCCCc-cCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEE
Confidence            99999999999998 55556799999999999974 5555554 999999999999995 4666664  89999999999


Q ss_pred             cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccccc
Q 006185          164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKR  243 (657)
Q Consensus       164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  243 (657)
                      +++|.+..             ...++.+++|+.|++++|.+..++....+++|+.|+++++.....+.+           
T Consensus       206 l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~-----------  261 (466)
T 1o6v_A          206 ATNNQISD-------------ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL-----------  261 (466)
T ss_dssp             CCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG-----------
T ss_pred             ecCCcccc-------------cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhh-----------
Confidence            99986542             222778999999999999987776667789999999987643221111           


Q ss_pred             CcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccc
Q 006185          244 CSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLR  323 (657)
Q Consensus       244 ~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  323 (657)
                                           ..+++|+.|+++++ .+....+ +  ..+++|++|++++| .+..++.      ...++
T Consensus       262 ---------------------~~l~~L~~L~l~~n-~l~~~~~-~--~~l~~L~~L~L~~n-~l~~~~~------~~~l~  309 (466)
T 1o6v_A          262 ---------------------SGLTKLTELKLGAN-QISNISP-L--AGLTALTNLELNEN-QLEDISP------ISNLK  309 (466)
T ss_dssp             ---------------------TTCTTCSEEECCSS-CCCCCGG-G--TTCTTCSEEECCSS-CCSCCGG------GGGCT
T ss_pred             ---------------------hcCCCCCEEECCCC-ccCcccc-c--cCCCccCeEEcCCC-cccCchh------hcCCC
Confidence                                 11267888888777 3343333 2  35899999999998 4554332      34589


Q ss_pred             cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccc
Q 006185          324 KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKE  403 (657)
Q Consensus       324 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  403 (657)
                      +|+.|++++|. +    .+..+.+.+++|++|++++| .+++. +.  +..+++|++|++++|. +..+         +.
T Consensus       310 ~L~~L~L~~n~-l----~~~~~~~~l~~L~~L~l~~n-~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~---------~~  370 (466)
T 1o6v_A          310 NLTYLTLYFNN-I----SDISPVSSLTKLQRLFFYNN-KVSDV-SS--LANLTNINWLSAGHNQ-ISDL---------TP  370 (466)
T ss_dssp             TCSEEECCSSC-C----SCCGGGGGCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCBC---------GG
T ss_pred             CCCEEECcCCc-C----CCchhhccCccCCEeECCCC-ccCCc-hh--hccCCCCCEEeCCCCc-cCcc---------ch
Confidence            99999999986 3    34445668899999999997 56553 32  2578999999999864 3333         12


Q ss_pred             ccccCCcccEEecCCCcCccc
Q 006185          404 ETELFSSLEKLTLIDLPRMTD  424 (657)
Q Consensus       404 ~~~~~~~L~~L~l~~c~~L~~  424 (657)
                       +..+++|+.|++++|+ ++.
T Consensus       371 -~~~l~~L~~L~l~~n~-~~~  389 (466)
T 1o6v_A          371 -LANLTRITQLGLNDQA-WTN  389 (466)
T ss_dssp             -GTTCTTCCEEECCCEE-EEC
T ss_pred             -hhcCCCCCEEeccCCc-ccC
Confidence             6778999999999975 444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=6.3e-28  Score=262.53  Aligned_cols=446  Identities=16%  Similarity=0.134  Sum_probs=268.2

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS   80 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~   80 (657)
                      ++++++++|.- ..+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|+++++|.
T Consensus        39 s~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~  117 (562)
T 3a79_B           39 SNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC  117 (562)
T ss_dssp             TTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred             CCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc
Confidence            35678888852 24899999999999998875 33 89999999999999998877778999999999999999999998


Q ss_pred             cccCCCCCcEEEccCCCCCCC--CcccCCCCCCCEEEeeCCCCCcccccccCCCCC--CEEEccCCCC--CCCCchhHhh
Q 006185           81 SLSFLSNLRTLRLDYCNHLPD--LSLIGELSGLEILDLSKSDVNEIPVSFGRLSHL--RLLDLTDCYN--LELIPPGVLS  154 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L--~~L~l~~c~~--~~~~~~~~~~  154 (657)
                      .  .+++|++|++++|.....  |..++++++|++|+++++.++.  ..+..+++|  ++|++++|..  .+..|.. +.
T Consensus       118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~  192 (562)
T 3a79_B          118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETES-LQ  192 (562)
T ss_dssp             C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCE-EE
T ss_pred             c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCccc-cc
Confidence            7  899999999999995443  4789999999999999999885  245555566  9999999654  3444433 44


Q ss_pred             cCc--cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC--c----cCCCCCCCCCccEEEEEEcCc
Q 006185          155 RLR--KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG--E----IMPSDMSLPNLTSFSITIGEE  226 (657)
Q Consensus       155 ~l~--~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~~~~~~~l~~L~~L~l~~~~~  226 (657)
                      .+.  .+ ++++++|.+...          .....+..+++|+.+++++|..  .    .++....+++|+.+++..+.-
T Consensus       193 ~l~~~~l-~l~l~~n~~~~~----------~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          193 IPNTTVL-HLVFHPNSLFSV----------QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             ECCEEEE-EEEECSSSCCCC----------CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred             ccCcceE-EEEecCccchhh----------hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence            443  12 334444433210          1112344566777777776641  0    111113445666666654421


Q ss_pred             cChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHH-HccccEEEEeeccccccccc-ccccc--ccccceEEEee
Q 006185          227 DTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNL-LLRSEILALIEVNDLENIFS-NLAND--DFNELMFLYIF  302 (657)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~-~~~L~~L~L~~~~~l~~~~~-~l~~~--~~~~L~~L~l~  302 (657)
                       ....+ ..+++......++.++++++.-...+|.++... ..+++.|.+.+...-.-..| .....  ...+|++|+++
T Consensus       262 -~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          262 -TWKCS-VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             -CHHHH-HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             -cHHHH-HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence             11111 111222233466666666653222344332100 03444444443321110111 00000  01457777777


Q ss_pred             cCCCceEEeeccccccccccccccEEeccccccccccccccCC--CCCCCCccEEEEecCCCcccccc-hhHHHhcccCc
Q 006185          303 GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLP--AGCLSNVKRLDVVGCGSMLKILP-SHLVQSFQNLQ  379 (657)
Q Consensus       303 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~p-~~~~~~~~~L~  379 (657)
                      +|. +.....      ...+++|+.|+++++. ++    +..|  .+.+++|++|+++++ .++.+.+ ...+..+++|+
T Consensus       340 ~n~-~~~~~~------~~~l~~L~~L~l~~n~-l~----~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          340 DTP-FIHMVC------PPSPSSFTFLNFTQNV-FT----DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             SSC-CCCCCC------CSSCCCCCEEECCSSC-CC----TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCC
T ss_pred             CCC-cccccC------ccCCCCceEEECCCCc-cc----cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCC
Confidence            773 322111      1236777888887775 22    2222  236777888888774 4544211 11125677888


Q ss_pred             EEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCccccc-CCccEEEeccCcccccccccccc
Q 006185          380 RLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSL-HNLKKVRVEECDELRQVFPANLG  458 (657)
Q Consensus       380 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~-~~L~~L~i~~C~~L~~~~~~~l~  458 (657)
                      +|+++++.--..+.        +..+..+++|+.|+++++. ++...     ...+ ++|++|+++++ +++.+ |..+.
T Consensus       407 ~L~l~~N~l~~~~~--------~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~l~~~L~~L~L~~N-~l~~i-p~~~~  470 (562)
T 3a79_B          407 TLDVSLNSLNSHAY--------DRTCAWAESILVLNLSSNM-LTGSV-----FRCLPPKVKVLDLHNN-RIMSI-PKDVT  470 (562)
T ss_dssp             EEECTTSCCBSCCS--------SCCCCCCTTCCEEECCSSC-CCGGG-----GSSCCTTCSEEECCSS-CCCCC-CTTTT
T ss_pred             EEECCCCcCCCccC--------hhhhcCcccCCEEECCCCC-CCcch-----hhhhcCcCCEEECCCC-cCccc-Chhhc
Confidence            88887754221121        1224556778888888764 33211     1112 57888888876 56655 44445


Q ss_pred             cccchhhhhhhcccccceeecccccCCCC-CCCCCCccEEEEecCCC
Q 006185          459 KKAAAEEMVLYRNRRYQIHIHATTSTSSP-TPSLGNLVSITIRGCGK  504 (657)
Q Consensus       459 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~i~~c~~  504 (657)
                      .+++|++|+++++       .+. ..|.. +..+++|+.|++++++-
T Consensus       471 ~l~~L~~L~L~~N-------~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          471 HLQALQELNVASN-------QLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             SSCCCSEEECCSS-------CCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CCCCCCEEECCCC-------CCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence            7788888887763       222 22333 67889999999998763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=6.6e-27  Score=238.59  Aligned_cols=150  Identities=20%  Similarity=0.276  Sum_probs=74.7

Q ss_pred             CCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL   91 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L   91 (657)
                      .+..++++++|+++++.+..++....+++|++|++++|.+..++.  |.++++|++|++++|.++.++ .+.++++|++|
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL  115 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence            344455555555555555555443355555555555555554444  455555555555555555443 35555555555


Q ss_pred             EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCc
Q 006185           92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF  168 (657)
Q Consensus        92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~  168 (657)
                      ++++|. ++....+.++++|++|++++|.....+..+.++++|++|++++| .+..++.  +..+++|++|++++|.
T Consensus       116 ~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          116 YLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             ECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             ECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCc
Confidence            555555 22222255555555555555533322223555555555555553 2333333  4455555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1.4e-25  Score=237.79  Aligned_cols=364  Identities=16%  Similarity=0.190  Sum_probs=205.9

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCC-CC-CccccCCCCCcEEEccCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV-SP-PSSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~l-p~~~~~l~~L~~L~l~~~~   97 (657)
                      +.++.+++.++.+|.  -.++|++|++++|.+..+++..|+++++|++|++++|.+. .+ +..|.++++|++|++++|.
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            456666666666666  2256777777777766555445677777777777777664 33 4456677777777777776


Q ss_pred             CCCC-CcccCCCCCCCEEEeeCCCCCc-cccc--ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185           98 HLPD-LSLIGELSGLEILDLSKSDVNE-IPVS--FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        98 ~~~~-~~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      .... |..++++++|++|++++|.++. .|..  ++++++|++|++++|...+..|...+.++++|++|++++|.+..  
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--  168 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS--  168 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC--
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc--
Confidence            3332 5667777777777777777663 3333  66777777777777443333344435677777777777765432  


Q ss_pred             ccccccccccchhhhcCC--CCccEEEeecCCCccCCCC----------CCCCCccEEEEEEcCccChhhHHHHHhhccc
Q 006185          174 ESEEDTRSNAKFIELGAL--SRLTSLHIDIPKGEIMPSD----------MSLPNLTSFSITIGEEDTLNDFIELFLENFN  241 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~----------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (657)
                               ..+..+..+  .+|+.|+++++....++..          ..+++|+.|+++                   
T Consensus       169 ---------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls-------------------  220 (455)
T 3v47_A          169 ---------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS-------------------  220 (455)
T ss_dssp             ---------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT-------------------
T ss_pred             ---------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC-------------------
Confidence                     222333333  4666777776665444332          122344444443                   


Q ss_pred             ccCcceEEeecccchhhhHHHHHHHH--ccccEEEEeeccccccccc----------cccccccccceEEEeecCCCceE
Q 006185          242 KRCSRAMGLSQDMRISALHSWIKNLL--LRSEILALIEVNDLENIFS----------NLANDDFNELMFLYIFGCNEMKC  309 (657)
Q Consensus       242 ~~~l~~l~l~~~~~~~~l~~~~~~~~--~~L~~L~L~~~~~l~~~~~----------~l~~~~~~~L~~L~l~~~~~l~~  309 (657)
                                ++.-....|.++....  .+++.|++.++........          .+..-..++|++|++++| .+..
T Consensus       221 ----------~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~  289 (455)
T 3v47_A          221 ----------GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFA  289 (455)
T ss_dssp             ----------TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCE
T ss_pred             ----------CCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cccc
Confidence                      3322233444444432  6677777766632211110          001112357888888877 4444


Q ss_pred             EeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccc
Q 006185          310 LLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELL  389 (657)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l  389 (657)
                      .+..    ....+++|+.|+++++. ++....  ...+.+++|++|++++| .++.+.+..+ ..+++|++|+++++. +
T Consensus       290 ~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l  359 (455)
T 3v47_A          290 LLKS----VFSHFTDLEQLTLAQNE-INKIDD--NAFWGLTHLLKLNLSQN-FLGSIDSRMF-ENLDKLEVLDLSYNH-I  359 (455)
T ss_dssp             ECTT----TTTTCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSS-CCCEECGGGG-TTCTTCCEEECCSSC-C
T ss_pred             cchh----hcccCCCCCEEECCCCc-ccccCh--hHhcCcccCCEEECCCC-ccCCcChhHh-cCcccCCEEECCCCc-c
Confidence            4322    22347778888887775 222111  11235677788888775 4555444433 567777777777753 3


Q ss_pred             eeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCc
Q 006185          390 VSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECD  447 (657)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~  447 (657)
                      +.+.        +..+..+++|+.|+++++ .++.++..  ....+++|++|++++++
T Consensus       360 ~~~~--------~~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          360 RALG--------DQSFLGLPNLKELALDTN-QLKSVPDG--IFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CEEC--------TTTTTTCTTCCEEECCSS-CCSCCCTT--TTTTCTTCCEEECCSSC
T ss_pred             cccC--------hhhccccccccEEECCCC-ccccCCHh--HhccCCcccEEEccCCC
Confidence            3321        344566777777777774 45554322  22346777777777754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1.5e-26  Score=243.03  Aligned_cols=404  Identities=16%  Similarity=0.119  Sum_probs=181.4

Q ss_pred             CCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCc-CCCchhhcCCCCc-------------cEEEecCCcCCCCC
Q 006185           15 TFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDL-------------KVLDLGGIRMVSPP   79 (657)
Q Consensus        15 ~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L-------------r~L~L~~~~~~~lp   79 (657)
                      +.+.|++|++++|.++.+|+.+ ++++|++|++++|.+. .+|.. ++++++|             ++|++++++++.+|
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            4567777777777777777666 7777777777777766 56655 3666654             67777777766666


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185           80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL  159 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L  159 (657)
                      ..   .++|++|++++|.....|..   +.+|++|++++|.++.+|...   ++|++|++++| .++.+| + ++++++|
T Consensus        88 ~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n-~l~~lp-~-~~~l~~L  155 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN-QLEKLP-E-LQNSSFL  155 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS-CCSSCC-C-CTTCTTC
T ss_pred             CC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCC-CCCCCc-c-cCCCCCC
Confidence            52   25677777777664444432   356777777777666555321   46777777764 344566 2 6667777


Q ss_pred             cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhc
Q 006185          160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLEN  239 (657)
Q Consensus       160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  239 (657)
                      ++|++++|.+..            .+.   ...+|+.|++++|.+..++....+++|+.|++.                 
T Consensus       156 ~~L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~-----------------  203 (454)
T 1jl5_A          156 KIIDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD-----------------  203 (454)
T ss_dssp             CEEECCSSCCSC------------CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC-----------------
T ss_pred             CEEECCCCcCcc------------cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECC-----------------
Confidence            777776664431            111   123666666666665555533444444444443                 


Q ss_pred             ccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccc
Q 006185          240 FNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQR  319 (657)
Q Consensus       240 ~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  319 (657)
                                                           ++ .++.+ +.    ..++|++|++++| .++.++.      .
T Consensus       204 -------------------------------------~N-~l~~l-~~----~~~~L~~L~l~~n-~l~~lp~------~  233 (454)
T 1jl5_A          204 -------------------------------------NN-SLKKL-PD----LPLSLESIVAGNN-ILEELPE------L  233 (454)
T ss_dssp             -------------------------------------SS-CCSSC-CC----CCTTCCEEECCSS-CCSSCCC------C
T ss_pred             -------------------------------------CC-cCCcC-CC----CcCcccEEECcCC-cCCcccc------c
Confidence                                                 22 11111 11    1246777777777 4444432      2


Q ss_pred             cccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185          320 VTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN  399 (657)
Q Consensus       320 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  399 (657)
                      ..+++|+.|+++++. ++.     +|. .+++|++|++++|. ++. +|..    +++|++|+++++. ++.+       
T Consensus       234 ~~l~~L~~L~l~~N~-l~~-----l~~-~~~~L~~L~l~~N~-l~~-l~~~----~~~L~~L~ls~N~-l~~l-------  292 (454)
T 1jl5_A          234 QNLPFLTTIYADNNL-LKT-----LPD-LPPSLEALNVRDNY-LTD-LPEL----PQSLTFLDVSENI-FSGL-------  292 (454)
T ss_dssp             TTCTTCCEEECCSSC-CSS-----CCS-CCTTCCEEECCSSC-CSC-CCCC----CTTCCEEECCSSC-CSEE-------
T ss_pred             CCCCCCCEEECCCCc-CCc-----ccc-cccccCEEECCCCc-ccc-cCcc----cCcCCEEECcCCc-cCcc-------
Confidence            246777777777764 221     222 34677777777743 444 3322    3667777777642 3222       


Q ss_pred             ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeec
Q 006185          400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIH  479 (657)
Q Consensus       400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~  479 (657)
                        +   ...++|+.|+++++ .++.+..      ..++|++|+++++ +++.+ |                         
T Consensus       293 --~---~~~~~L~~L~l~~N-~l~~i~~------~~~~L~~L~Ls~N-~l~~l-p-------------------------  333 (454)
T 1jl5_A          293 --S---ELPPNLYYLNASSN-EIRSLCD------LPPSLEELNVSNN-KLIEL-P-------------------------  333 (454)
T ss_dssp             --S---CCCTTCCEEECCSS-CCSEECC------CCTTCCEEECCSS-CCSCC-C-------------------------
T ss_pred             --c---CcCCcCCEEECcCC-cCCcccC------CcCcCCEEECCCC-ccccc-c-------------------------
Confidence              1   11256677777664 3444321      0246666666664 23322 1                         


Q ss_pred             ccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCe
Q 006185          480 ATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFS  559 (657)
Q Consensus       480 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~  559 (657)
                            .   .+++|+.|++++| +++.++.     .+++|++|+++++. +..++..                ...+..
T Consensus       334 ------~---~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~i----------------p~~l~~  381 (454)
T 1jl5_A          334 ------A---LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDI----------------PESVED  381 (454)
T ss_dssp             ------C---CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCC----------------CTTCCE
T ss_pred             ------c---cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCC----------------hHHHHh
Confidence                  1   2466777777766 3555422     35677777777764 3332110                112333


Q ss_pred             eEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccce
Q 006185          560 IKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCK  619 (657)
Q Consensus       560 L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~  619 (657)
                      |...  .....+| .      .+++|++|+++++ .++.+|.    .|.+++.|.+.+|.
T Consensus       382 L~~n--~~~~~i~-~------~~~~L~~L~ls~N-~l~~~~~----iP~sl~~L~~~~~~  427 (454)
T 1jl5_A          382 LRMN--SHLAEVP-E------LPQNLKQLHVETN-PLREFPD----IPESVEDLRMNSER  427 (454)
T ss_dssp             EECC--C-----------------------------------------------------
T ss_pred             hhhc--ccccccc-c------ccCcCCEEECCCC-cCCcccc----chhhHhheeCcCcc
Confidence            3221  1222333 1      2378999999886 4555544    57888888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.6e-26  Score=234.18  Aligned_cols=292  Identities=22%  Similarity=0.286  Sum_probs=225.0

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS   83 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~   83 (657)
                      ++++.++|.+..+++|++|++++|.+++++....+++|++|++++|.+..++.  |.++++|++|++++|.+..++. +.
T Consensus        53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~  129 (347)
T 4fmz_A           53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LA  129 (347)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred             CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hc
Confidence            56778889999999999999999999988875589999999999999988764  7999999999999999998877 89


Q ss_pred             CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185           84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY  163 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~  163 (657)
                      .+++|++|++++|.....+..++++++|++|++++|.+..++. +..+++|++|++++| .+..++.  +..+++|+.|+
T Consensus       130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~  205 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFT  205 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEE
T ss_pred             cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceee
Confidence            9999999999999878888889999999999999999998876 899999999999995 5667776  78999999999


Q ss_pred             cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccccc
Q 006185          164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKR  243 (657)
Q Consensus       164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  243 (657)
                      +++|.+..             ...+..+++|+.|++++|.+..++....+++|+.|+++++.                  
T Consensus       206 l~~n~l~~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~------------------  254 (347)
T 4fmz_A          206 AYVNQITD-------------ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ------------------  254 (347)
T ss_dssp             CCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC------------------
T ss_pred             cccCCCCC-------------CchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc------------------
Confidence            99986541             22278899999999999987666555556666666665431                  


Q ss_pred             CcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccc
Q 006185          244 CSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLR  323 (657)
Q Consensus       244 ~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  323 (657)
                                                           +++. +.+  ..+++|++|++++| .+..++      ....++
T Consensus       255 -------------------------------------l~~~-~~~--~~l~~L~~L~l~~n-~l~~~~------~~~~l~  287 (347)
T 4fmz_A          255 -------------------------------------ISDI-NAV--KDLTKLKMLNVGSN-QISDIS------VLNNLS  287 (347)
T ss_dssp             -------------------------------------CCCC-GGG--TTCTTCCEEECCSS-CCCCCG------GGGGCT
T ss_pred             -------------------------------------cCCC-hhH--hcCCCcCEEEccCC-ccCCCh------hhcCCC
Confidence                                                 1111 111  23667777777777 444331      233477


Q ss_pred             cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185          324 KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE  387 (657)
Q Consensus       324 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~  387 (657)
                      +|+.|++++|. ++.....  ..+.+++|++|++++|+ +++..|   ...+++|++|++++++
T Consensus       288 ~L~~L~L~~n~-l~~~~~~--~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          288 QLNSLFLNNNQ-LGNEDME--VIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             TCSEEECCSSC-CCGGGHH--HHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             CCCEEECcCCc-CCCcChh--HhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            78888888775 2211100  12357888888888865 555444   2578888888888754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.4e-26  Score=245.53  Aligned_cols=373  Identities=20%  Similarity=0.180  Sum_probs=258.4

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCcccc-CCCC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCC-
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEV-PDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSP-   78 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~l-   78 (657)
                      ++.+++++|.  ..+++++|++++|.++.+ +..+ .+++|++|++++|.+. .+++..|.++++|++|++++|.++.+ 
T Consensus        18 ~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~   95 (455)
T 3v47_A           18 INRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE   95 (455)
T ss_dssp             CSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred             CCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC
Confidence            3567888887  348999999999999977 4444 8999999999999987 77777789999999999999999865 


Q ss_pred             CccccCCCCCcEEEccCCCCCC-CCc--ccCCCCCCCEEEeeCCCCCcc-ccc-ccCCCCCCEEEccCCCCCCCCchhHh
Q 006185           79 PSSLSFLSNLRTLRLDYCNHLP-DLS--LIGELSGLEILDLSKSDVNEI-PVS-FGRLSHLRLLDLTDCYNLELIPPGVL  153 (657)
Q Consensus        79 p~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~c~~~~~~~~~~~  153 (657)
                      |..|+++++|++|++++|.... .|.  .++++++|++|++++|.++.+ |.. ++++++|++|++++|. +..++...+
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l  174 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDL  174 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTS
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhh
Confidence            7899999999999999998433 243  499999999999999999976 555 8999999999999965 444443336


Q ss_pred             hcC--ccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCcc-CCCC----CCCCCccEEEEEEcCc
Q 006185          154 SRL--RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEI-MPSD----MSLPNLTSFSITIGEE  226 (657)
Q Consensus       154 ~~l--~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~----~~l~~L~~L~l~~~~~  226 (657)
                      ..+  .+|+.|+++++.+......   .........+..+++|+.|++++|.+.. .+..    ....+|+.|++.++..
T Consensus       175 ~~l~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          175 LNFQGKHFTLLRLSSITLQDMNEY---WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             GGGTTCEEEEEECTTCBCTTCSTT---CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             hccccccccccccccCcccccchh---hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence            665  7899999998865421110   0000112234566899999999998632 2211    3346788887765421


Q ss_pred             cChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCC
Q 006185          227 DTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNE  306 (657)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~  306 (657)
                      ...         .+....+....  . ..+..+      ..++|+.|+++++. +.+..+.. ...+++|++|++++| .
T Consensus       252 ~~~---------~~~~~~~~~~~--~-~~~~~~------~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~  310 (455)
T 3v47_A          252 MGS---------SFGHTNFKDPD--N-FTFKGL------EASGVKTCDLSKSK-IFALLKSV-FSHFTDLEQLTLAQN-E  310 (455)
T ss_dssp             TSC---------CTTCCSSCCCC--T-TTTGGG------TTSCCCEEECCSSC-CCEECTTT-TTTCTTCCEEECTTS-C
T ss_pred             ccc---------ccchhhhccCc--c-cccccc------cccCceEEEecCcc-ccccchhh-cccCCCCCEEECCCC-c
Confidence            110         00000000000  0 000000      01678889888873 34443332 235899999999999 5


Q ss_pred             ceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc
Q 006185          307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC  386 (657)
Q Consensus       307 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c  386 (657)
                      +..++..    ....+++|++|++++|. ++.+..  ...+.+++|++|++++| .++.+.|..+ ..+++|++|+++++
T Consensus       311 l~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N  381 (455)
T 3v47_A          311 INKIDDN----AFWGLTHLLKLNLSQNF-LGSIDS--RMFENLDKLEVLDLSYN-HIRALGDQSF-LGLPNLKELALDTN  381 (455)
T ss_dssp             CCEECTT----TTTTCTTCCEEECCSSC-CCEECG--GGGTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS
T ss_pred             ccccChh----HhcCcccCCEEECCCCc-cCCcCh--hHhcCcccCCEEECCCC-cccccChhhc-cccccccEEECCCC
Confidence            6655443    23358999999999985 332211  11346899999999996 5666556554 67899999999995


Q ss_pred             ccceeeeecccccccccccccCCcccEEecCCCc
Q 006185          387 ELLVSVFEIERVNIAKEETELFSSLEKLTLIDLP  420 (657)
Q Consensus       387 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  420 (657)
                       .++.+.        +..+..+++|+.|++++++
T Consensus       382 -~l~~~~--------~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          382 -QLKSVP--------DGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             -CCSCCC--------TTTTTTCTTCCEEECCSSC
T ss_pred             -ccccCC--------HhHhccCCcccEEEccCCC
Confidence             444441        2335678999999999976

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=1.6e-26  Score=243.09  Aligned_cols=187  Identities=15%  Similarity=0.092  Sum_probs=153.8

Q ss_pred             CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185           11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT   90 (657)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~   90 (657)
                      +.++.+++|++|++++|.++.+|....+++|++|++++|.+..++   |+.+++|++|++++|.++.++  ++++++|++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            356778999999999999998885448899999999999988875   688999999999999998875  889999999


Q ss_pred             EEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185           91 LRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus        91 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (657)
                      |++++|.....+  ++++++|++|++++|.++.++  ++++++|++|++++|..++.++   ++.+++|++|++++|.+.
T Consensus       111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc
Confidence            999999844433  889999999999999998874  8899999999999987777774   678999999999988654


Q ss_pred             cccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185          171 WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       171 ~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  224 (657)
                                  ..+  ++.+++|+.|++++|.+..++ ...+++|+.|+++++
T Consensus       184 ------------~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          184 ------------ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             ------------CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSS
T ss_pred             ------------eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCC
Confidence                        222  778889999999998876653 455677777777655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=2.3e-26  Score=241.63  Aligned_cols=333  Identities=20%  Similarity=0.169  Sum_probs=220.3

Q ss_pred             CCCCCCCCC-CCCCCCCccEEEccCCCcc-ccCCCC-CCCC-------------CcEEEecCCcCcCCCchhhcCCCCcc
Q 006185            3 AGVELKDWP-SINTFEDLTGISLMFNDIH-EVPDGL-ECPK-------------LQALFLQKNHLLVIPDPFFQGMKDLK   66 (657)
Q Consensus         3 ~~~~l~~~~-~~~~~~~L~~L~l~~~~~~-~l~~~~-~~~~-------------L~~L~l~~~~~~~~~~~~~~~l~~Lr   66 (657)
                      +++.+..+| +++.+++|++|++++|.+. .+|..+ .+++             +++|++++|.+..+|..    .++|+
T Consensus        19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~~~L~   94 (454)
T 1jl5_A           19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLE   94 (454)
T ss_dssp             ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----CTTCS
T ss_pred             ccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----cCCCC
Confidence            356677888 6999999999999999987 788776 6665             49999999999888872    48999


Q ss_pred             EEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCC
Q 006185           67 VLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLE  146 (657)
Q Consensus        67 ~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~  146 (657)
                      +|++++|.++.+|..   ..+|++|++++|.....+..   .++|++|++++|.++.+| .++++++|++|++++| .++
T Consensus        95 ~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~  166 (454)
T 1jl5_A           95 SLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLK  166 (454)
T ss_dssp             EEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCS
T ss_pred             EEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCc
Confidence            999999999888864   47899999999984433322   279999999999999999 6999999999999995 566


Q ss_pred             CCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCc
Q 006185          147 LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEE  226 (657)
Q Consensus       147 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~  226 (657)
                      .+|..    ..+|++|++++|.+.            .. ..++.+++|+.|++++|.+..++..  .++|+.|+++++.-
T Consensus       167 ~lp~~----~~~L~~L~L~~n~l~------------~l-~~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          167 KLPDL----PPSLEFIAAGNNQLE------------EL-PELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNIL  227 (454)
T ss_dssp             CCCCC----CTTCCEEECCSSCCS------------SC-CCCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCC
T ss_pred             ccCCC----cccccEEECcCCcCC------------cC-ccccCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcC
Confidence            77753    359999999999764            22 3589999999999999998777655  35788888776532


Q ss_pred             cChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCC
Q 006185          227 DTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNE  306 (657)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~  306 (657)
                      ...+.+                               . .+++|+.|+++++ .++.+. .    .+++|++|++++| .
T Consensus       228 ~~lp~~-------------------------------~-~l~~L~~L~l~~N-~l~~l~-~----~~~~L~~L~l~~N-~  268 (454)
T 1jl5_A          228 EELPEL-------------------------------Q-NLPFLTTIYADNN-LLKTLP-D----LPPSLEALNVRDN-Y  268 (454)
T ss_dssp             SSCCCC-------------------------------T-TCTTCCEEECCSS-CCSSCC-S----CCTTCCEEECCSS-C
T ss_pred             Cccccc-------------------------------C-CCCCCCEEECCCC-cCCccc-c----cccccCEEECCCC-c
Confidence            221111                               1 1256777777665 233222 1    2467777777777 4


Q ss_pred             ceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc
Q 006185          307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC  386 (657)
Q Consensus       307 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c  386 (657)
                      ++.++..        +++|+.|+++++. ++.+     + ...++|+.|+++++ .++.+ +.    ..++|++|+++++
T Consensus       269 l~~l~~~--------~~~L~~L~ls~N~-l~~l-----~-~~~~~L~~L~l~~N-~l~~i-~~----~~~~L~~L~Ls~N  327 (454)
T 1jl5_A          269 LTDLPEL--------PQSLTFLDVSENI-FSGL-----S-ELPPNLYYLNASSN-EIRSL-CD----LPPSLEELNVSNN  327 (454)
T ss_dssp             CSCCCCC--------CTTCCEEECCSSC-CSEE-----S-CCCTTCCEEECCSS-CCSEE-CC----CCTTCCEEECCSS
T ss_pred             ccccCcc--------cCcCCEEECcCCc-cCcc-----c-CcCCcCCEEECcCC-cCCcc-cC----CcCcCCEEECCCC
Confidence            4443322        4677777777764 3221     1 12357777777774 34432 21    1246777777763


Q ss_pred             ccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccC
Q 006185          387 ELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEEC  446 (657)
Q Consensus       387 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C  446 (657)
                       .++.+         +.   .+++|+.|+++++ .++.++.      .+++|++|+++++
T Consensus       328 -~l~~l---------p~---~~~~L~~L~L~~N-~l~~lp~------~l~~L~~L~L~~N  367 (454)
T 1jl5_A          328 -KLIEL---------PA---LPPRLERLIASFN-HLAEVPE------LPQNLKQLHVEYN  367 (454)
T ss_dssp             -CCSCC---------CC---CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS
T ss_pred             -ccccc---------cc---cCCcCCEEECCCC-ccccccc------hhhhccEEECCCC
Confidence             23322         22   2467777777775 4555432      2567777777775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=7.4e-25  Score=230.39  Aligned_cols=160  Identities=16%  Similarity=0.100  Sum_probs=126.8

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL  116 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  116 (657)
                      .+++|++|++++|.+..+|.  |..+++|++|++++|+++.+|  ++.+++|++|++++|.....+  ++++++|++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC  113 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred             HcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence            67899999999999888873  689999999999999998886  889999999999999844433  889999999999


Q ss_pred             eCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccE
Q 006185          117 SKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTS  196 (657)
Q Consensus       117 ~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~  196 (657)
                      ++|.++.+|  ++++++|++|++++| .++.++   ++++++|++|++++|....           ..  .++.+++|+.
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~-----------~~--~~~~l~~L~~  174 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT-----------KL--DVTPQTQLTT  174 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC-----------CC--CCTTCTTCCE
T ss_pred             CCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc-----------cc--ccccCCcCCE
Confidence            999998876  889999999999994 566664   6889999999998884321           12  4677888888


Q ss_pred             EEeecCCCccCCCCCCCCCccEEEEE
Q 006185          197 LHIDIPKGEIMPSDMSLPNLTSFSIT  222 (657)
Q Consensus       197 L~l~~~~~~~~~~~~~l~~L~~L~l~  222 (657)
                      |++++|.+..++ ...+++|+.|++.
T Consensus       175 L~ls~n~l~~l~-l~~l~~L~~L~l~  199 (457)
T 3bz5_A          175 LDCSFNKITELD-VSQNKLLNRLNCD  199 (457)
T ss_dssp             EECCSSCCCCCC-CTTCTTCCEEECC
T ss_pred             EECCCCccceec-cccCCCCCEEECc
Confidence            888888776654 3344555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=5.9e-25  Score=227.76  Aligned_cols=154  Identities=14%  Similarity=0.277  Sum_probs=125.1

Q ss_pred             CCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCE
Q 006185           36 LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEI  113 (657)
Q Consensus        36 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~  113 (657)
                      ..++++++|+++++.+..+|..+|.++++|++|++++|.++.++ ..+.++++|++|++++|..... |..++++++|++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            36789999999999988999988899999999999999998765 4889999999999999985554 366899999999


Q ss_pred             EEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCC
Q 006185          114 LDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALS  192 (657)
Q Consensus       114 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~  192 (657)
                      |++++|.++.+|.. ++++++|++|++++| .+..++...+.++++|++|++++|.+..              ..++.++
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~l~  186 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH--------------VDLSLIP  186 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB--------------CCGGGCT
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc--------------ccccccc
Confidence            99999999988877 588999999999995 4566665557888999999998886532              1245667


Q ss_pred             CccEEEeecCCC
Q 006185          193 RLTSLHIDIPKG  204 (657)
Q Consensus       193 ~L~~L~l~~~~~  204 (657)
                      +|+.|+++++..
T Consensus       187 ~L~~L~l~~n~l  198 (390)
T 3o6n_A          187 SLFHANVSYNLL  198 (390)
T ss_dssp             TCSEEECCSSCC
T ss_pred             ccceeecccccc
Confidence            777777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=231.95  Aligned_cols=192  Identities=23%  Similarity=0.233  Sum_probs=126.4

Q ss_pred             ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCC
Q 006185           19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~   97 (657)
                      -+.++.+++.++.+|.... +++++|++++|.+..+++..|.++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus        13 ~~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            3567777777777776542 4677777777777766655567777777777777777654 5677777777777777777


Q ss_pred             CCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185           98 HLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES  175 (657)
Q Consensus        98 ~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g  175 (657)
                      ....| ..++++++|++|++++|.++.+ |..+.++++|++|+++++ .+..++...+.++++|++|++++|.+..    
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----  166 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS----  166 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS----
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc----
Confidence            44444 3467777777777777777744 445777777777777773 4444444446777777777777775432    


Q ss_pred             ccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEE
Q 006185          176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITI  223 (657)
Q Consensus       176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~  223 (657)
                             .....+..+++|+.|++.+|.+..++..  ..+++|+.|++.+
T Consensus       167 -------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          167 -------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             -------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             -------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence                   2334566777777777777766554432  4455555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=2.5e-24  Score=229.55  Aligned_cols=208  Identities=26%  Similarity=0.274  Sum_probs=171.6

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-   80 (657)
                      +.+++.+|. ...+++++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|. 
T Consensus        20 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   98 (477)
T 2id5_A           20 RKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG   98 (477)
T ss_dssp             SCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred             CCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence            457788884 3357999999999999988643 4 89999999999999998866678999999999999999998886 


Q ss_pred             cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK  158 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~  158 (657)
                      .|.++++|++|++++|..... +..+.++++|++|++++|.++.+ |..+.++++|++|++++| .++.++...+.++++
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~  177 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG  177 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTT
T ss_pred             cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCC
Confidence            578999999999999994443 57899999999999999999865 457999999999999995 677888777999999


Q ss_pred             CcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC-ccCCCC-CCCCCccEEEEEEc
Q 006185          159 LEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG-EIMPSD-MSLPNLTSFSITIG  224 (657)
Q Consensus       159 L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l~~~  224 (657)
                      |+.|++++|.+..           .....+..+++|+.|+++++.. ..++.. ....+|+.|++.++
T Consensus       178 L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          178 LIVLRLRHLNINA-----------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             CCEEEEESCCCCE-----------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             CcEEeCCCCcCcE-----------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            9999999987643           3445688999999999999764 444443 33446777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=1.2e-24  Score=225.35  Aligned_cols=304  Identities=15%  Similarity=0.134  Sum_probs=234.8

Q ss_pred             CCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcE
Q 006185           14 NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRT   90 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~   90 (657)
                      ..++++++|+++++.++.+|...  .+++|++|++++|.+..++...|.++++|++|++++|.++.++ ..++++++|++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            35699999999999999999875  8999999999999999888877899999999999999998765 56899999999


Q ss_pred             EEccCCCCCCCCcc-cCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCc
Q 006185           91 LRLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF  168 (657)
Q Consensus        91 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~  168 (657)
                      |++++|.....|.. ++++++|++|++++|.++.++. .++++++|++|++++| .++.++   ++.+++|++|++++|.
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccc
Confidence            99999996666654 6999999999999999997754 5999999999999994 566665   5789999999999885


Q ss_pred             cccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185          169 CHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM  248 (657)
Q Consensus       169 ~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  248 (657)
                      +.                .+....+|+.|++++|.+..++.. ..++|+.|++.++.-...+.                 
T Consensus       198 l~----------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~-----------------  243 (390)
T 3o6n_A          198 LS----------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAW-----------------  243 (390)
T ss_dssp             CS----------------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGG-----------------
T ss_pred             cc----------------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCcccHH-----------------
Confidence            43                234556899999999998777554 35789999988764322111                 


Q ss_pred             EeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEE
Q 006185          249 GLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWL  328 (657)
Q Consensus       249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L  328 (657)
                                    +.. +++|+.|+++++ .+++..+. ....+++|++|++++| .++.++...     ..+++|+.|
T Consensus       244 --------------l~~-l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~l~~L~~L  300 (390)
T 3o6n_A          244 --------------LLN-YPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNLYG-----QPIPTLKVL  300 (390)
T ss_dssp             --------------GGG-CTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEECSS-----SCCTTCCEE
T ss_pred             --------------HcC-CCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCccc-----CCCCCCCEE
Confidence                          111 267888888877 34444332 1235889999999998 677665543     248899999


Q ss_pred             eccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185          329 FIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE  387 (657)
Q Consensus       329 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~  387 (657)
                      ++++|. ++.+..   ..+.+++|++|+++++. ++.+ +   ...+++|++|++++++
T Consensus       301 ~L~~n~-l~~~~~---~~~~l~~L~~L~L~~N~-i~~~-~---~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          301 DLSHNH-LLHVER---NQPQFDRLENLYLDHNS-IVTL-K---LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             ECCSSC-CCCCGG---GHHHHTTCSEEECCSSC-CCCC-C---CCTTCCCSEEECCSSC
T ss_pred             ECCCCc-ceecCc---cccccCcCCEEECCCCc-ccee-C---chhhccCCEEEcCCCC
Confidence            999885 432211   12367899999999965 5553 3   2467899999998843

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.1e-24  Score=231.37  Aligned_cols=154  Identities=14%  Similarity=0.266  Sum_probs=128.2

Q ss_pred             CCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCE
Q 006185           36 LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEI  113 (657)
Q Consensus        36 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~  113 (657)
                      ..+.+++.++++++.+..+|..+|.++++|++|++++|.++.++ ..|+.+++|++|++++|.....+ ..++++++|++
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            36789999999999999999999999999999999999998765 48999999999999999955554 56799999999


Q ss_pred             EEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCC
Q 006185          114 LDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALS  192 (657)
Q Consensus       114 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~  192 (657)
                      |++++|.++.+|.. ++++++|++|++++| .+..++...++++++|++|++++|.+..            .  .++.++
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~--~~~~l~  192 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH------------V--DLSLIP  192 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB------------C--CGGGCT
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC------------c--Chhhhh
Confidence            99999999999887 589999999999995 4566665558899999999999886532            1  255667


Q ss_pred             CccEEEeecCCC
Q 006185          193 RLTSLHIDIPKG  204 (657)
Q Consensus       193 ~L~~L~l~~~~~  204 (657)
                      +|+.|++++|.+
T Consensus       193 ~L~~L~l~~n~l  204 (597)
T 3oja_B          193 SLFHANVSYNLL  204 (597)
T ss_dssp             TCSEEECCSSCC
T ss_pred             hhhhhhcccCcc
Confidence            777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.4e-23  Score=226.45  Aligned_cols=303  Identities=18%  Similarity=0.219  Sum_probs=218.2

Q ss_pred             CCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEE
Q 006185           15 TFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTL   91 (657)
Q Consensus        15 ~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L   91 (657)
                      .+.+++.+++++|.++.+|...  .+++|++|++++|.+..+++..|+.+++|++|++++|.++.+|. .|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            4688999999999999999875  79999999999999998887778999999999999999987764 57999999999


Q ss_pred             EccCCCCCCCCcc-cCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185           92 RLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus        92 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      ++++|.....|.. ++++++|++|++++|.++.++. .++++++|++|++++| .+..++   ++.+++|++|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCcc
Confidence            9999996666654 6999999999999999997655 6999999999999995 566665   57899999999998854


Q ss_pred             ccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEE
Q 006185          170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMG  249 (657)
Q Consensus       170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  249 (657)
                      .                .+....+|+.|++++|.+..++... .++|+.|++.+                          
T Consensus       205 ~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~--------------------------  241 (597)
T 3oja_B          205 S----------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQH--------------------------  241 (597)
T ss_dssp             S----------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCS--------------------------
T ss_pred             c----------------cccCCchhheeeccCCccccccccc-CCCCCEEECCC--------------------------
Confidence            3                2445568999999998875554432 23455555443                          


Q ss_pred             eecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEe
Q 006185          250 LSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLF  329 (657)
Q Consensus       250 l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  329 (657)
                                                  +. +++. +.+  ..+++|+.|++++| .+..++..    .+..+++|+.|+
T Consensus       242 ----------------------------n~-l~~~-~~l--~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~  284 (597)
T 3oja_B          242 ----------------------------NN-LTDT-AWL--LNYPGLVEVDLSYN-ELEKIMYH----PFVKMQRLERLY  284 (597)
T ss_dssp             ----------------------------SC-CCCC-GGG--GGCTTCSEEECCSS-CCCEEESG----GGTTCSSCCEEE
T ss_pred             ----------------------------CC-CCCC-hhh--ccCCCCCEEECCCC-ccCCCCHH----HhcCccCCCEEE
Confidence                                        31 1111 111  24677888888887 45544332    223477888888


Q ss_pred             ccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCC
Q 006185          330 IRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFS  409 (657)
Q Consensus       330 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  409 (657)
                      ++++. ++.+.   ...+.+++|+.|++++|. +.. +|..+ ..+++|++|+++++. +..+           .+..++
T Consensus       285 Ls~N~-l~~l~---~~~~~l~~L~~L~Ls~N~-l~~-i~~~~-~~l~~L~~L~L~~N~-l~~~-----------~~~~~~  345 (597)
T 3oja_B          285 ISNNR-LVALN---LYGQPIPTLKVLDLSHNH-LLH-VERNQ-PQFDRLENLYLDHNS-IVTL-----------KLSTHH  345 (597)
T ss_dssp             CTTSC-CCEEE---CSSSCCTTCCEEECCSSC-CCC-CGGGH-HHHTTCSEEECCSSC-CCCC-----------CCCTTC
T ss_pred             CCCCC-CCCCC---cccccCCCCcEEECCCCC-CCc-cCccc-ccCCCCCEEECCCCC-CCCc-----------ChhhcC
Confidence            88764 33221   112357788888888754 444 34433 567777777777753 2221           134456


Q ss_pred             cccEEecCCCc
Q 006185          410 SLEKLTLIDLP  420 (657)
Q Consensus       410 ~L~~L~l~~c~  420 (657)
                      +|+.|++++++
T Consensus       346 ~L~~L~l~~N~  356 (597)
T 3oja_B          346 TLKNLTLSHND  356 (597)
T ss_dssp             CCSEEECCSSC
T ss_pred             CCCEEEeeCCC
Confidence            66666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=9.1e-23  Score=206.27  Aligned_cols=148  Identities=20%  Similarity=0.253  Sum_probs=77.4

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~   96 (657)
                      ++++++++++.++.+|... .++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            4556666666655555443 24556666666655555444455666666666666655543 445555666666666665


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCcc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      .....|..+.  ++|++|++++|.++.+|.. +.++++|++|++++|.... ......+..+ +|++|++++|.+
T Consensus       113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            5333443333  5566666666555555443 5555566666655532210 1111213344 555555555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=4.8e-22  Score=200.84  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=59.4

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~   96 (657)
                      ++++++++++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            45555555555555554332 3455555555555555544445555555555555555443 444555555555555555


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccC
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTD  141 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~  141 (657)
                      .....|..+.  ++|++|++++|.++.++. .+.++++|++|++++
T Consensus       111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  154 (330)
T 1xku_A          111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT  154 (330)
T ss_dssp             CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence            4333333322  445555555554444333 244455555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=5.1e-22  Score=200.66  Aligned_cols=201  Identities=21%  Similarity=0.296  Sum_probs=160.9

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      +.+++++|. ...+.+++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|+++++|..
T Consensus        40 ~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~  118 (330)
T 1xku_A           40 DLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK  118 (330)
T ss_dssp             TSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred             CCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence            346677774 2347999999999999988874 3 899999999999999988666689999999999999999999887


Q ss_pred             ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC---cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      +.  ++|++|++++|.....+ ..++++++|++|++++|.++   ..+..+.++++|++|++++ +.++.+|.. +  .+
T Consensus       119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~--~~  192 (330)
T 1xku_A          119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-L--PP  192 (330)
T ss_dssp             CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-C--CT
T ss_pred             hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCcc-c--cc
Confidence            75  79999999999855444 56899999999999999887   4566799999999999999 457778865 2  38


Q ss_pred             cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEE
Q 006185          158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSIT  222 (657)
Q Consensus       158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~  222 (657)
                      +|++|++++|.+..           ..+..+..+++|+.|++++|.+..++..  ..+++|+.|+++
T Consensus       193 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          193 SLTELHLDGNKITK-----------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             TCSEEECTTSCCCE-----------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             cCCEEECCCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence            99999999997642           4456788899999999999887555432  333444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=9.2e-25  Score=239.78  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=63.4

Q ss_pred             CCCCccEEEecCCcCCC-CCccccC-C-CCCcEEEccCCCCCCC---CcccCCCCCCCEEEeeCCCCCc-----cccccc
Q 006185           61 GMKDLKVLDLGGIRMVS-PPSSLSF-L-SNLRTLRLDYCNHLPD---LSLIGELSGLEILDLSKSDVNE-----IPVSFG  129 (657)
Q Consensus        61 ~l~~Lr~L~L~~~~~~~-lp~~~~~-l-~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~  129 (657)
                      .+++|++|+++++.++. .+..+.. + .+|++|++++|.....   +..+.++++|++|++++|.++.     ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            55666666666665532 2233333 2 2366666666552211   1222355666666666665431     222344


Q ss_pred             CCCCCCEEEccCCCCC----CCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeec
Q 006185          130 RLSHLRLLDLTDCYNL----ELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDI  201 (657)
Q Consensus       130 ~l~~L~~L~l~~c~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~  201 (657)
                      .+++|++|+++++...    ..++. .+.++++|++|++++|.+.            ..+..+..+++|+.|+++.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECB
T ss_pred             cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHH------------HHHHHHhhhhHHHhhcccc
Confidence            5566666666653321    11121 1345666666666665432            2334455566666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=4.5e-22  Score=201.17  Aligned_cols=187  Identities=24%  Similarity=0.297  Sum_probs=154.1

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      +.+++.+|.. ..+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|..
T Consensus        42 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  120 (332)
T 2ft3_A           42 DLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN  120 (332)
T ss_dssp             SSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred             CCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc
Confidence            4567777742 35799999999999998865 34 899999999999999988777789999999999999999999987


Q ss_pred             ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC---cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      +.  ++|++|++++|.....+ ..++++++|++|++++|.++   ..|..+..+ +|++|++++ +.++.+|.. +  .+
T Consensus       121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~~-~--~~  193 (332)
T 2ft3_A          121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPKD-L--PE  193 (332)
T ss_dssp             CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCSS-S--CS
T ss_pred             cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCcc-c--cC
Confidence            76  89999999999955555 56899999999999999986   446667777 999999999 457778865 3  27


Q ss_pred             cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCC
Q 006185          158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPS  209 (657)
Q Consensus       158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  209 (657)
                      +|++|++++|.+..           ..+..+..+++|+.|++++|.+..++.
T Consensus       194 ~L~~L~l~~n~i~~-----------~~~~~l~~l~~L~~L~L~~N~l~~~~~  234 (332)
T 2ft3_A          194 TLNELHLDHNKIQA-----------IELEDLLRYSKLYRLGLGHNQIRMIEN  234 (332)
T ss_dssp             SCSCCBCCSSCCCC-----------CCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred             CCCEEECCCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence            89999999987642           344567888899999999888755544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=7.4e-24  Score=232.56  Aligned_cols=171  Identities=15%  Similarity=0.095  Sum_probs=102.7

Q ss_pred             EEEecCCcCcCCCchhhcCCCCccEEEecCCcC----CCCCcccc------------CCCCCcEEEccCCCCCCC--Ccc
Q 006185           43 ALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM----VSPPSSLS------------FLSNLRTLRLDYCNHLPD--LSL  104 (657)
Q Consensus        43 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~----~~lp~~~~------------~l~~L~~L~l~~~~~~~~--~~~  104 (657)
                      .+.+.++ +...+..++..+++|++|+++++..    ..+|..++            ++++|++|++++|. +++  +..
T Consensus        54 ~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~  131 (592)
T 3ogk_B           54 HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDR  131 (592)
T ss_dssp             EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHH
T ss_pred             EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHH
Confidence            3444433 2345566678888899999988632    22333332            67888888888875 432  344


Q ss_pred             cCCC--CCCCEEEeeCCC-CC--cccccccCCCCCCEEEccCCCCCCC----CchhHhhcCccCcEEEcccCcccccccc
Q 006185          105 IGEL--SGLEILDLSKSD-VN--EIPVSFGRLSHLRLLDLTDCYNLEL----IPPGVLSRLRKLEELYMSHSFCHWQFES  175 (657)
Q Consensus       105 ~~~l--~~L~~L~l~~~~-i~--~lp~~i~~l~~L~~L~l~~c~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~g  175 (657)
                      +++.  .+|++|++++|. ++  .++..+.++++|++|++++|.....    ++. ....+++|++|+++++.+....  
T Consensus       132 l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~--  208 (592)
T 3ogk_B          132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKIS--  208 (592)
T ss_dssp             HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCC--
T ss_pred             HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccC--
Confidence            4443  348888888875 22  3334445778888888888643222    222 2567788888888777543100  


Q ss_pred             ccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEE
Q 006185          176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITI  223 (657)
Q Consensus       176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~  223 (657)
                           .......+.++++|+.|++.++....++.. ..+++|++|.+..
T Consensus       209 -----~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          209 -----PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             -----HHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred             -----HHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence                 013344456677888888877765544433 4456777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=4.3e-22  Score=200.27  Aligned_cols=218  Identities=20%  Similarity=0.270  Sum_probs=169.5

Q ss_pred             CCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185           16 FEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD   94 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~   94 (657)
                      .+.+++|++++|.++.+|..+ .+++|++|++++|.+..+|.. |+++++|++|++++|.++.+|..++++++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            478889999999888888876 788899999999888888776 488899999999999888888888899999999998


Q ss_pred             CCCCCC-CCcccC---------CCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           95 YCNHLP-DLSLIG---------ELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        95 ~~~~~~-~~~~~~---------~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                      +|.... .|..++         ++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~L  236 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELDL  236 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEEC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEEC
Confidence            876443 455544         488899999999988888888888999999999884 56677776 788899999999


Q ss_pred             ccCccccccccccccccccchhhhcCCCCccEEEeecCCC-ccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccc
Q 006185          165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG-EIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNK  242 (657)
Q Consensus       165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  242 (657)
                      ++|.+..           ..+..++.+++|+.|++++|.. +.+|.. ..+++|+.|+++++.      ..+.+++.+..
T Consensus       237 s~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~------~~~~iP~~l~~  299 (328)
T 4fcg_A          237 RGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV------NLSRLPSLIAQ  299 (328)
T ss_dssp             TTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT------TCCCCCGGGGG
T ss_pred             cCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC------chhhccHHHhh
Confidence            8876542           5566788888899999988764 556655 677888888888653      23333444433


Q ss_pred             -cCcceEEeecc
Q 006185          243 -RCSRAMGLSQD  253 (657)
Q Consensus       243 -~~l~~l~l~~~  253 (657)
                       +.++.+.+..+
T Consensus       300 L~~L~~l~l~~~  311 (328)
T 4fcg_A          300 LPANCIILVPPH  311 (328)
T ss_dssp             SCTTCEEECCGG
T ss_pred             ccCceEEeCCHH
Confidence             66777776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=5.6e-22  Score=202.30  Aligned_cols=201  Identities=18%  Similarity=0.178  Sum_probs=145.7

Q ss_pred             CCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEE
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTL   91 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L   91 (657)
                      ...|+...+.+++++.++.+|.... ++|++|++++|.+..++...|.++++|++|++++|.++.+ |..|+++++|++|
T Consensus        27 ~~~C~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CCEECTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            4445666667788888888876543 4788888888887777776678888888888888887765 4567788888888


Q ss_pred             EccCCCCCCCCc-ccCCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCc
Q 006185           92 RLDYCNHLPDLS-LIGELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF  168 (657)
Q Consensus        92 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~  168 (657)
                      ++++|.....+. .++++++|++|++++|.++.+|.  .+.++++|++|++++|..++.++...+.++++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            888887555553 37788888888888888887776  577888888888888656666655557778888888888776


Q ss_pred             cccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185          169 CHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE  225 (657)
Q Consensus       169 ~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~  225 (657)
                      +..           ..+..++.+++|++|++++|....++..  ..+++|+.|+++++.
T Consensus       186 l~~-----------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          186 LQS-----------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             CCE-----------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred             cCc-----------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence            542           3456677778888888888776555543  346778888887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=4.7e-24  Score=234.31  Aligned_cols=40  Identities=25%  Similarity=0.322  Sum_probs=22.0

Q ss_pred             CCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCC
Q 006185          490 SLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPT  530 (657)
Q Consensus       490 ~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~  530 (657)
                      .+++|+.|++++|+. ++......+..+++|++|++++|+.
T Consensus       479 ~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          479 GCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            356666666666654 3322223344566666666666653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=6.7e-22  Score=198.83  Aligned_cols=203  Identities=22%  Similarity=0.337  Sum_probs=94.6

Q ss_pred             CCCCCCC-CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC-CCCCccc
Q 006185            6 ELKDWPS-INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM-VSPPSSL   82 (657)
Q Consensus         6 ~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-~~lp~~~   82 (657)
                      ++..+|. +..+++|++|++++|.++.+|..+ .+++|++|++++|.+..+|.. |.++++|++|++++|++ ..+|..+
T Consensus        92 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A           92 PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhH
Confidence            3334442 444455555555555554444433 445555555555544444443 34455555555555432 3344433


Q ss_pred             cC---------CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHh
Q 006185           83 SF---------LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVL  153 (657)
Q Consensus        83 ~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~  153 (657)
                      ..         +++|++|++++|.....|..++++++|++|++++|.++.+|..++++++|++|++++|...+.+|.. +
T Consensus       171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~  249 (328)
T 4fcg_A          171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-F  249 (328)
T ss_dssp             EEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-T
T ss_pred             hhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-h
Confidence            32         4555555555554333444455555555555555555555444555555555555554444444443 4


Q ss_pred             hcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC-ccCCCC-CCCCCccEEEE
Q 006185          154 SRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG-EIMPSD-MSLPNLTSFSI  221 (657)
Q Consensus       154 ~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l  221 (657)
                      +.+++|++|++++|....           ..+..++.+++|+.|++++|.. +.+|.. ..+++|+.+.+
T Consensus       250 ~~l~~L~~L~L~~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          250 GGRAPLKRLILKDCSNLL-----------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             TCCCCCCEEECTTCTTCC-----------BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             cCCCCCCEEECCCCCchh-----------hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence            445555555555443221           3333444455555555554432 333333 34444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=2.2e-21  Score=191.65  Aligned_cols=208  Identities=25%  Similarity=0.323  Sum_probs=145.2

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCc-CCCC-C
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR-MVSP-P   79 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~l-p   79 (657)
                      +.+++.+|. ...+++++|++++|.++.++...  .+++|++|++++|.+..+++..|.++++|++|++++|. ++.+ |
T Consensus        20 ~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           20 QQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             SSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             cCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence            345666663 34567788888888777766432  67778888888777776655556777888888888776 6665 5


Q ss_pred             ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           80 SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      ..+..+++|++|++++|..... +..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...+.+++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~  177 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence            6677778888888887774443 45677778888888888777766654 677778888888773 55666665567777


Q ss_pred             cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185          158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG  224 (657)
Q Consensus       158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~  224 (657)
                      +|++|++++|.+..           ..+..+..+++|+.|++++|.+..++..  ..+++|+.|++.++
T Consensus       178 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          178 SLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            88888887776542           3355667777788888877777655543  55677777777655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=6.4e-22  Score=197.80  Aligned_cols=174  Identities=20%  Similarity=0.284  Sum_probs=127.0

Q ss_pred             CCccEEEccCCCcc---ccCCCC-CCCCCcEEEecC-CcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCc
Q 006185           17 EDLTGISLMFNDIH---EVPDGL-ECPKLQALFLQK-NHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLR   89 (657)
Q Consensus        17 ~~L~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~   89 (657)
                      .++++|++++|.++   .+|..+ .+++|++|++++ |.+. .+|.. |+++++|++|++++|.++ .+|..+.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            56788888888876   466655 778888888874 6666 45554 578888888888888876 6777788888888


Q ss_pred             EEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCC-CCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185           90 TLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLS-HLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH  166 (657)
Q Consensus        90 ~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~  166 (657)
                      +|++++|... ..|..++++++|++|++++|.++ .+|..+++++ +|++|++++|...+.+|.. +..+. |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence            8888888744 35677788888888888888877 7777788877 7888888885544456655 66776 88888877


Q ss_pred             CccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      |.+..           ..+..+..+++|+.|++++|.+
T Consensus       207 N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          207 NMLEG-----------DASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             SEEEE-----------CCGGGCCTTSCCSEEECCSSEE
T ss_pred             CcccC-----------cCCHHHhcCCCCCEEECCCCce
Confidence            75532           4455667777777777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=7.5e-21  Score=200.03  Aligned_cols=197  Identities=24%  Similarity=0.325  Sum_probs=146.6

Q ss_pred             CCCCCCC-CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCC
Q 006185           11 PSINTFE-DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNL   88 (657)
Q Consensus        11 ~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L   88 (657)
                      |..+.+. ..+.++.++..++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.++.++ ..|.++++|
T Consensus        36 p~~C~C~~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L  114 (440)
T 3zyj_A           36 PSVCSCSNQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL  114 (440)
T ss_dssp             CSSSEECTTSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred             CCCCEeCCCCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence            4444453 46778888888888887654 67888888888888777667888888999999888887655 678888888


Q ss_pred             cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185           89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH  166 (657)
Q Consensus        89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~  166 (657)
                      ++|++++|.....+ ..+.++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++
T Consensus       115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            88888888855554 468888888888888888887765 4788888888888888888888776678888888888888


Q ss_pred             CccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEE
Q 006185          167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSI  221 (657)
Q Consensus       167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l  221 (657)
                      |.+.             .+..+..+++|+.|++++|.+..++..  ..+++|+.|++
T Consensus       195 n~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  238 (440)
T 3zyj_A          195 CNLR-------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM  238 (440)
T ss_dssp             SCCS-------------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcCc-------------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence            8653             123467777788888877776544322  33444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=4.4e-21  Score=195.66  Aligned_cols=262  Identities=19%  Similarity=0.212  Sum_probs=203.0

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS   80 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~   80 (657)
                      ++++++++|. ...+++++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.
T Consensus        39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  117 (353)
T 2z80_A           39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS  117 (353)
T ss_dssp             CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred             CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence            4567888885 3347999999999999988873 3 89999999999999998877778999999999999999999887


Q ss_pred             c-ccCCCCCcEEEccCCCCCCCCc--ccCCCCCCCEEEeeCC-CCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhc
Q 006185           81 S-LSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKS-DVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSR  155 (657)
Q Consensus        81 ~-~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~  155 (657)
                      . ++++++|++|++++|.....|.  .++++++|++|++++| .++.+ |..++++++|++|++++|. +..++...+.+
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~  196 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKS  196 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTT
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhc
Confidence            6 8999999999999998555554  7899999999999999 47766 4569999999999999965 44553334899


Q ss_pred             CccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-----CCCCCccEEEEEEcCccChh
Q 006185          156 LRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-----MSLPNLTSFSITIGEEDTLN  230 (657)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~  230 (657)
                      +++|++|++++|.+..           .....+..+++|+.|++++|.+..++..     .....++.+++....     
T Consensus       197 l~~L~~L~l~~n~l~~-----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-----  260 (353)
T 2z80_A          197 IQNVSHLILHMKQHIL-----------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-----  260 (353)
T ss_dssp             CSEEEEEEEECSCSTT-----------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-----
T ss_pred             cccCCeecCCCCcccc-----------chhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-----
Confidence            9999999999987531           1222345689999999999987655432     234566667666431     


Q ss_pred             hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCC
Q 006185          231 DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCN  305 (657)
Q Consensus       231 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~  305 (657)
                                         +.+ ..+..+|+++... ++|+.|+++++ .++.+.+.. ...+++|++|++++|+
T Consensus       261 -------------------l~~-~~l~~l~~~l~~l-~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          261 -------------------ITD-ESLFQVMKLLNQI-SGLLELEFSRN-QLKSVPDGI-FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             -------------------CCH-HHHHHHHHHHHTC-TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             -------------------ccC-cchhhhHHHHhcc-cCCCEEECCCC-CCCccCHHH-HhcCCCCCEEEeeCCC
Confidence                               111 1344567666654 89999999988 455444332 2458999999999994

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=9.1e-21  Score=200.12  Aligned_cols=183  Identities=25%  Similarity=0.288  Sum_probs=135.9

Q ss_pred             CCCCCCC-CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCC
Q 006185           11 PSINTFE-DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNL   88 (657)
Q Consensus        11 ~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L   88 (657)
                      |..+.+. ..+.++.++..++.+|.... +++++|++++|.+..++...|.++++|++|++++|.++.++ ..|.++++|
T Consensus        47 p~~C~C~~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  125 (452)
T 3zyi_A           47 PSVCSCSNQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL  125 (452)
T ss_dssp             CTTSEECSSSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCCEECCCCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccC
Confidence            3344443 45678888888888886543 57888888888888776666788888888888888887654 678888888


Q ss_pred             cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185           89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH  166 (657)
Q Consensus        89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~  166 (657)
                      ++|++++|.....+ ..++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++
T Consensus       126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence            88888888854444 457888888888888888887765 4788888888888888888888776677888888888887


Q ss_pred             CccccccccccccccccchhhhcCCCCccEEEeecCCCccC
Q 006185          167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIM  207 (657)
Q Consensus       167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  207 (657)
                      |.+.             ....+..+++|+.|++++|.+..+
T Consensus       206 n~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          206 CNIK-------------DMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             SCCS-------------SCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             Cccc-------------ccccccccccccEEECcCCcCccc
Confidence            7653             123466667777777777665433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=1.5e-19  Score=195.44  Aligned_cols=256  Identities=19%  Similarity=0.188  Sum_probs=174.8

Q ss_pred             CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185           17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~   96 (657)
                      .++++|++++|.++.+|.... ++|++|++++|.+..+|.    .+++|++|++++|+++.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            468888888888888887655 788888888888887776    46888888888888888887   6788888888888


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE  176 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~  176 (657)
                      .....|.   .+.+|++|++++|.++.+|..   +++|++|++++| .++.+|.    ...+|+.|++++|.+.      
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~------  174 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLT------  174 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS------
T ss_pred             cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCC------
Confidence            8444444   567888888888888888764   478888888884 5556653    3467888888877653      


Q ss_pred             cccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccch
Q 006185          177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRI  256 (657)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  256 (657)
                            ..+   ..+++|+.|++++|.+..++..  +++|+.|++.+                                 
T Consensus       175 ------~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~---------------------------------  210 (622)
T 3g06_A          175 ------SLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYN---------------------------------  210 (622)
T ss_dssp             ------CCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCS---------------------------------
T ss_pred             ------CCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcC---------------------------------
Confidence                  222   3456777788777776655543  34455444433                                 


Q ss_pred             hhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccc
Q 006185          257 SALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNF  336 (657)
Q Consensus       257 ~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  336 (657)
                                           + .++.+.     ..+++|+.|++++| .++.++.        .+++|+.|++++|. +
T Consensus       211 ---------------------N-~l~~l~-----~~~~~L~~L~Ls~N-~L~~lp~--------~l~~L~~L~Ls~N~-L  253 (622)
T 3g06_A          211 ---------------------N-RLTSLP-----ALPSGLKELIVSGN-RLTSLPV--------LPSELKELMVSGNR-L  253 (622)
T ss_dssp             ---------------------S-CCSSCC-----CCCTTCCEEECCSS-CCSCCCC--------CCTTCCEEECCSSC-C
T ss_pred             ---------------------C-cccccC-----CCCCCCCEEEccCC-ccCcCCC--------CCCcCcEEECCCCC-C
Confidence                                 2 112111     12467777777777 5554442        26778888888774 3


Q ss_pred             cccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185          337 VEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE  387 (657)
Q Consensus       337 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~  387 (657)
                      +     .+|. .+++|+.|++++| .++. +|..+ ..+++|+.|++++++
T Consensus       254 ~-----~lp~-~~~~L~~L~Ls~N-~L~~-lp~~l-~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          254 T-----SLPM-LPSGLLSLSVYRN-QLTR-LPESL-IHLSSETTVNLEGNP  295 (622)
T ss_dssp             S-----CCCC-CCTTCCEEECCSS-CCCS-CCGGG-GGSCTTCEEECCSCC
T ss_pred             C-----cCCc-ccccCcEEeCCCC-CCCc-CCHHH-hhccccCEEEecCCC
Confidence            2     2333 5677888888885 4554 45443 577788888887753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=3.8e-23  Score=227.05  Aligned_cols=393  Identities=15%  Similarity=0.070  Sum_probs=203.2

Q ss_pred             CCCCCCCEEEeeCCCCC-ccccccc-CCCCCCEEEccCCCCCCCC-chhHhhcCccCcEEEcccCccccccccccccccc
Q 006185          106 GELSGLEILDLSKSDVN-EIPVSFG-RLSHLRLLDLTDCYNLELI-PPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN  182 (657)
Q Consensus       106 ~~l~~L~~L~l~~~~i~-~lp~~i~-~l~~L~~L~l~~c~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~  182 (657)
                      ..+++|++|+++++.++ ..+..+. .+++|++|++++|..++.. ......++++|++|++++|.+....       ..
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-------~~  174 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-------GH  174 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-------GG
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-------hH
Confidence            35667777777777666 2333443 5777888888777544431 1222446778888887777543100       00


Q ss_pred             cchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHH
Q 006185          183 AKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSW  262 (657)
Q Consensus       183 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~  262 (657)
                      ........+++|+.|+++++. ..+..                    ..+ ..+..  ..+.++.+++.++..+..++..
T Consensus       175 ~l~~~~~~~~~L~~L~l~~~~-~~~~~--------------------~~l-~~l~~--~~~~L~~L~L~~~~~~~~l~~~  230 (594)
T 2p1m_B          175 WLSHFPDTYTSLVSLNISCLA-SEVSF--------------------SAL-ERLVT--RCPNLKSLKLNRAVPLEKLATL  230 (594)
T ss_dssp             GGGGSCTTCCCCCEEECTTCC-SCCCH--------------------HHH-HHHHH--HCTTCCEEECCTTSCHHHHHHH
T ss_pred             HHHHHhhcCCcCcEEEecccC-CcCCH--------------------HHH-HHHHH--hCCCCcEEecCCCCcHHHHHHH
Confidence            112222355566666666553 11110                    000 00000  1245555555555455556655


Q ss_pred             HHHHHccccEEEEeeccc------cccccccccccccccceEE-EeecCCCceEEeeccccccccccccccEEecccccc
Q 006185          263 IKNLLLRSEILALIEVND------LENIFSNLANDDFNELMFL-YIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQN  335 (657)
Q Consensus       263 ~~~~~~~L~~L~L~~~~~------l~~~~~~l~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (657)
                      +... ++|+.|.+..+..      +....+.+  ..+++|+.| .+.+.. ...++.     ....+++|++|++++|. 
T Consensus       231 ~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l--~~~~~L~~Ls~~~~~~-~~~l~~-----~~~~~~~L~~L~L~~~~-  300 (594)
T 2p1m_B          231 LQRA-PQLEELGTGGYTAEVRPDVYSGLSVAL--SGCKELRCLSGFWDAV-PAYLPA-----VYSVCSRLTTLNLSYAT-  300 (594)
T ss_dssp             HHHC-TTCSEEECSBCCCCCCHHHHHHHHHHH--HTCTTCCEEECCBTCC-GGGGGG-----GHHHHTTCCEEECTTCC-
T ss_pred             HhcC-CcceEcccccccCccchhhHHHHHHHH--hcCCCcccccCCcccc-hhhHHH-----HHHhhCCCCEEEccCCC-
Confidence            5554 8888888766532      11122111  245666666 222221 000000     11246788888888876 


Q ss_pred             ccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc--------ccceeeeeccccccccccccc
Q 006185          336 FVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC--------ELLVSVFEIERVNIAKEETEL  407 (657)
Q Consensus       336 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c--------~~l~~~~~~~~~~~~~~~~~~  407 (657)
                      +++..... -...+++|++|++++|  +.+.....+...+++|++|++.+|        ..++..    +.   ..-...
T Consensus       301 l~~~~l~~-~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~----~l---~~l~~~  370 (594)
T 2p1m_B          301 VQSYDLVK-LLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ----GL---VSVSMG  370 (594)
T ss_dssp             CCHHHHHH-HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH----HH---HHHHHH
T ss_pred             CCHHHHHH-HHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH----HH---HHHHHh
Confidence            43211000 0235788888888887  333233334456788888888543        222211    00   011123


Q ss_pred             CCcccEEecCCCcCcccccCCCCcccccCCccEEEec-----cCccccccccc-ccccccchhhhhhhcccccceeeccc
Q 006185          408 FSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVE-----ECDELRQVFPA-NLGKKAAAEEMVLYRNRRYQIHIHAT  481 (657)
Q Consensus       408 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~-----~C~~L~~~~~~-~l~~~~~L~~l~l~~~~~l~~~~~~~  481 (657)
                      +++|+.|.+ +|..++.... ......+++|++|++.     +|..++..+.. .+      ..                
T Consensus       371 ~~~L~~L~~-~~~~l~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~------~~----------------  426 (594)
T 2p1m_B          371 CPKLESVLY-FCRQMTNAAL-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF------GA----------------  426 (594)
T ss_dssp             CTTCCEEEE-EESCCCHHHH-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH------HH----------------
T ss_pred             chhHHHHHH-hcCCcCHHHH-HHHHhhCCCcceeEeecccCCCcccccCCchhhHH------HH----------------
Confidence            677777743 4555554210 0001136777788777     56666543110 00      00                


Q ss_pred             ccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeE
Q 006185          482 TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIK  561 (657)
Q Consensus       482 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~  561 (657)
                           -+..+++|++|++++  ++++.....+...+++|+.|++++|. +...     +...+.      ..+++|+.|+
T Consensus       427 -----l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~-----~~~~l~------~~~~~L~~L~  487 (594)
T 2p1m_B          427 -----IVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL-----GMHHVL------SGCDSLRKLE  487 (594)
T ss_dssp             -----HHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH-----HHHHHH------HHCTTCCEEE
T ss_pred             -----HHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH-----HHHHHH------hcCCCcCEEE
Confidence                 012567888888866  56554444444457888888888876 3211     111111      1478888888


Q ss_pred             cCcCCCccccccCCCcceeeccccceeeeccCCC
Q 006185          562 LCDLGSLTCFSSSGLHATVEFLALEALQIIDCPG  595 (657)
Q Consensus       562 l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~  595 (657)
                      +++|+. +........  ..+++|++|++++|+.
T Consensus       488 L~~n~~-~~~~~~~~~--~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          488 IRDCPF-GDKALLANA--SKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EESCSC-CHHHHHHTG--GGGGGSSEEEEESSCC
T ss_pred             CcCCCC-cHHHHHHHH--HhCCCCCEEeeeCCCC
Confidence            888875 432201111  1468888888888876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=1.9e-20  Score=184.81  Aligned_cols=193  Identities=20%  Similarity=0.248  Sum_probs=163.5

Q ss_pred             ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCC
Q 006185           19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~   97 (657)
                      -++++.+.+.++.+|... .++|++|++++|.+..++...|.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            378999999999998754 46999999999999988887789999999999999999876 7789999999999999997


Q ss_pred             -CCCC-CcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccc
Q 006185           98 -HLPD-LSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFE  174 (657)
Q Consensus        98 -~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  174 (657)
                       .... +..+.++++|++|++++|.++.+ |..+.++++|++|++++ +.++.++...++++++|++|++++|.+..   
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---  167 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISS---  167 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCE---
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccc---
Confidence             4444 57899999999999999999977 55689999999999999 45677777668899999999999997642   


Q ss_pred             cccccccccchhhhcCCCCccEEEeecCCCccCC-CC-CCCCCccEEEEEEc
Q 006185          175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP-SD-MSLPNLTSFSITIG  224 (657)
Q Consensus       175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~-~~l~~L~~L~l~~~  224 (657)
                              .....+..+++|+.|++++|.+..+. .. ..+++|+.|+++++
T Consensus       168 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          168 --------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             --------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence                    23345888999999999999986653 33 56788888888765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=2.6e-21  Score=193.34  Aligned_cols=172  Identities=19%  Similarity=0.180  Sum_probs=139.3

Q ss_pred             CCCcEEEecCCcCcC---CCchhhcCCCCccEEEecC-CcCC-CCCccccCCCCCcEEEccCCCCC-CCCcccCCCCCCC
Q 006185           39 PKLQALFLQKNHLLV---IPDPFFQGMKDLKVLDLGG-IRMV-SPPSSLSFLSNLRTLRLDYCNHL-PDLSLIGELSGLE  112 (657)
Q Consensus        39 ~~L~~L~l~~~~~~~---~~~~~~~~l~~Lr~L~L~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~  112 (657)
                      .++++|+++++.+..   +|.. |.++++|++|++++ +.+. .+|..|+++++|++|++++|... ..|..++++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            579999999999884   6665 68999999999995 7764 78999999999999999999854 4678899999999


Q ss_pred             EEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc-cCcEEEcccCccccccccccccccccchhhhcC
Q 006185          113 ILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR-KLEELYMSHSFCHWQFESEEDTRSNAKFIELGA  190 (657)
Q Consensus       113 ~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~  190 (657)
                      +|++++|.++ .+|..+.++++|++|++++|...+.+|.. ++++. +|++|++++|.+..           ..+..+..
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~-----------~~~~~~~~  196 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG-----------KIPPTFAN  196 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE-----------ECCGGGGG
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec-----------cCChHHhC
Confidence            9999999988 78889999999999999996554478877 88887 99999999986642           45666777


Q ss_pred             CCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185          191 LSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG  224 (657)
Q Consensus       191 l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~  224 (657)
                      ++ |+.|++++|.+......  ..+++|+.|+++++
T Consensus       197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            76 99999998876433322  45566666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.9e-21  Score=191.96  Aligned_cols=192  Identities=23%  Similarity=0.244  Sum_probs=138.1

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC---CccccCCCCCcEEEccCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP---PSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l---p~~~~~l~~L~~L~l~~~   96 (657)
                      +.++++++.++.+|.... ++|++|++++|.+..+|..+|.++++|++|++++|.++.+   +..+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            567888888888876543 5788888888888888877778888888888888877644   566667888888888888


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFE  174 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  174 (657)
                      .....|..+.++++|++|++++|.++.++.  .+.++++|++|++++|. +...+...+.++++|++|++++|.+..   
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---  164 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE---  164 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG---
T ss_pred             ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc---
Confidence            755566678888888888888888777664  57788888888888854 444443447778888888888875531   


Q ss_pred             cccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEE
Q 006185          175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITI  223 (657)
Q Consensus       175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~  223 (657)
                             ...+..+..+++|+.|++++|.+..++..  ..+++|+.|++++
T Consensus       165 -------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          165 -------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             -------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             -------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence                   02455677778888888888877555322  4455566555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=2.6e-20  Score=195.93  Aligned_cols=206  Identities=25%  Similarity=0.307  Sum_probs=171.6

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-   80 (657)
                      +.+++.+|. ...+++++|++++|.++.++...  .+++|++|++++|.+..++...|.++++|++|++++|+++.+|. 
T Consensus        52 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  130 (440)
T 3zyj_A           52 RKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG  130 (440)
T ss_dssp             SCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred             CCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence            456778884 23489999999999999887543  89999999999999998888889999999999999999998876 


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCC-CCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKS-DVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      .|..+++|++|++++|.....+ ..+.++++|++|+++++ .+..++. .+.++++|++|++++ +.++.+|.  +..++
T Consensus       131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~  207 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LTPLI  207 (440)
T ss_dssp             TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CTTCS
T ss_pred             HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cCCCc
Confidence            6899999999999999955444 57899999999999995 5677766 589999999999999 46778885  89999


Q ss_pred             cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185          158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG  224 (657)
Q Consensus       158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~  224 (657)
                      +|++|++++|.+..           ..+..+..+++|+.|++++|.+..++..  ..+++|+.|+++++
T Consensus       208 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          208 KLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             SCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             ccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            99999999997653           4467789999999999999998666544  45566666665543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=2.8e-20  Score=196.42  Aligned_cols=206  Identities=24%  Similarity=0.279  Sum_probs=170.3

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-   80 (657)
                      +.+++.+|. ...+++++|++++|.++.++.. + .+++|++|++++|.+..++...|.++++|++|+|++|+++.+|. 
T Consensus        63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  141 (452)
T 3zyi_A           63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG  141 (452)
T ss_dssp             SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred             CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence            456777874 2347999999999999987544 3 89999999999999998887778999999999999999998775 


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCC-CCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKS-DVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      .+.++++|++|++++|.....+ ..+.++++|++|+++++ .++.+|. .+.++++|++|++++ +.++.+|.  +..++
T Consensus       142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~  218 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPLV  218 (452)
T ss_dssp             TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTCT
T ss_pred             hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--ccccc
Confidence            4889999999999999955444 57899999999999995 5777776 489999999999999 46777875  78999


Q ss_pred             cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185          158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG  224 (657)
Q Consensus       158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~  224 (657)
                      +|++|++++|.+..           ..+..+..+++|+.|++++|.+..++..  ..+++|+.|+++++
T Consensus       219 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          219 GLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             TCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            99999999997653           4567789999999999999988665443  45566666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=2.5e-20  Score=186.08  Aligned_cols=230  Identities=22%  Similarity=0.212  Sum_probs=182.1

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCC---CchhhcCCCCccEEEecCCcCCCC
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVI---PDPFFQGMKDLKVLDLGGIRMVSP   78 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~~~~l   78 (657)
                      +.+++++|. ...+++++|++++|.++.+|...  .+++|++|++++|.+..+   +.. +..+++|++|++++|.+..+
T Consensus        16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l   93 (306)
T 2z66_A           16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITM   93 (306)
T ss_dssp             SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEE
T ss_pred             CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccC
Confidence            456788884 34589999999999999998864  899999999999998744   344 56899999999999999999


Q ss_pred             CccccCCCCCcEEEccCCCCCCCC--cccCCCCCCCEEEeeCCCCCc-ccccccCCCCCCEEEccCCCCCC-CCchhHhh
Q 006185           79 PSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNE-IPVSFGRLSHLRLLDLTDCYNLE-LIPPGVLS  154 (657)
Q Consensus        79 p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~~~-~~~~~~~~  154 (657)
                      |..+..+++|++|++++|.....+  ..+.++++|++|++++|.++. .|..+.++++|++|++++|...+ .+|.. +.
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~  172 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FT  172 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CT
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hh
Confidence            999999999999999999854444  578999999999999999884 45668999999999999965443 24554 88


Q ss_pred             cCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhH
Q 006185          155 RLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDF  232 (657)
Q Consensus       155 ~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~  232 (657)
                      .+++|++|++++|.+..           ..+..+..+++|+.|++++|.+..++..  ..+++|+.|+++++.-..    
T Consensus       173 ~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----  237 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT----  237 (306)
T ss_dssp             TCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB----
T ss_pred             hCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc----
Confidence            99999999999997642           4456788999999999999998777653  678999999998763222    


Q ss_pred             HHHHhhcccc--cCcceEEeecc
Q 006185          233 IELFLENFNK--RCSRAMGLSQD  253 (657)
Q Consensus       233 ~~~~~~~~~~--~~l~~l~l~~~  253 (657)
                        ..+..+..  +.++.+++++|
T Consensus       238 --~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          238 --SKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             --CSSSSCCCCCTTCCEEECTTC
T ss_pred             --cCHHHHHhhhccCCEEEccCC
Confidence              11222222  35666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=9.4e-20  Score=181.50  Aligned_cols=199  Identities=19%  Similarity=0.283  Sum_probs=172.4

Q ss_pred             CCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCC
Q 006185            6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFL   85 (657)
Q Consensus         6 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l   85 (657)
                      .+.+....+.+++|++|++++|.++.++....+++|++|++++|.+..++.  |..+++|++|++++|.++.++ .+..+
T Consensus        30 ~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l  106 (308)
T 1h6u_A           30 NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGL  106 (308)
T ss_dssp             STTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred             CcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCC
Confidence            444545566789999999999999999865589999999999999998887  799999999999999998876 68999


Q ss_pred             CCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcc
Q 006185           86 SNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMS  165 (657)
Q Consensus        86 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~  165 (657)
                      ++|++|++++|. ++....++++++|++|++++|.++.++. ++.+++|++|++++| .+..++.  +..+++|++|+++
T Consensus       107 ~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~  181 (308)
T 1h6u_A          107 QSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKAD  181 (308)
T ss_dssp             TTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECC
Confidence            999999999999 5555569999999999999999998876 899999999999995 5677776  7999999999999


Q ss_pred             cCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcC
Q 006185          166 HSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGE  225 (657)
Q Consensus       166 ~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~  225 (657)
                      +|.+.             ....+..+++|+.|++++|.+..++....+++|+.|++.++.
T Consensus       182 ~n~l~-------------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          182 DNKIS-------------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             SSCCC-------------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             CCccC-------------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence            99764             122378899999999999998877766788999999999873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=1.3e-19  Score=178.50  Aligned_cols=200  Identities=20%  Similarity=0.207  Sum_probs=174.8

Q ss_pred             CCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL   91 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L   91 (657)
                      .++.+++++.++++++.++.+|..+. +++++|++++|.+..++...|.++++|++|++++|.++.++.. +.+++|++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            35678899999999999999997664 6899999999999988777789999999999999999887765 789999999


Q ss_pred             EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185           92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus        92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (657)
                      ++++|.....|..+.++++|++|++++|.++.+|. .+.++++|++|++++ +.++.+|.+++..+++|++|++++|.+.
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCC
Confidence            99999977788889999999999999999998874 599999999999999 5677888887889999999999999765


Q ss_pred             cccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEEcC
Q 006185          171 WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGE  225 (657)
Q Consensus       171 ~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~  225 (657)
                      .           .....+..+++|+.|++++|.+..+|.. ....+|+.+++.+++
T Consensus       162 ~-----------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          162 E-----------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             C-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             c-----------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            2           2234467899999999999999888877 666789999998774

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=3.3e-21  Score=193.23  Aligned_cols=184  Identities=16%  Similarity=0.138  Sum_probs=127.6

Q ss_pred             CccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccC
Q 006185           18 DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDY   95 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~   95 (657)
                      .++..+++.+.+..++...  .+++|++|++++|.+..+++..|.++++|++|++++|.++..+. +..+++|++|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            3455566666665443333  56788999999988888877678889999999999988876554 88888899999988


Q ss_pred             CCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185           96 CNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES  175 (657)
Q Consensus        96 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g  175 (657)
                      |....    +...++|++|++++|.++.++..  .+++|++|++++| .++.++...++.+++|++|++++|.+..    
T Consensus        90 n~l~~----l~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----  158 (317)
T 3o53_A           90 NYVQE----LLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT----  158 (317)
T ss_dssp             SEEEE----EEECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE----
T ss_pred             Ccccc----ccCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc----
Confidence            87322    23448888999988888876643  4678888888884 5566655447788888888888886542    


Q ss_pred             ccccccccchhhh-cCCCCccEEEeecCCCccCCCCCCCCCccEEE
Q 006185          176 EEDTRSNAKFIEL-GALSRLTSLHIDIPKGEIMPSDMSLPNLTSFS  220 (657)
Q Consensus       176 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  220 (657)
                             ..+..+ ..+++|+.|++++|.+..++....+++|+.|+
T Consensus       159 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~  197 (317)
T 3o53_A          159 -------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD  197 (317)
T ss_dssp             -------EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred             -------ccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence                   223334 35678888888777765444333333333333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=2.3e-19  Score=176.17  Aligned_cols=208  Identities=23%  Similarity=0.238  Sum_probs=170.7

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-c
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-S   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~   80 (657)
                      +.++.++|. .-.+++++|++++|.++.++.. + .+++|++|++++|.+..++...|.++++|++|++++|.++.++ .
T Consensus        16 ~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           16 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             TSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            345667774 2236899999999999988763 3 8999999999999999888877899999999999999998765 6


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc--ccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE--IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      .+.++++|++|++++|.....+ ..++++++|++|++++|.++.  +|..++++++|++|++++| .++.++...+..+.
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  173 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH  173 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh
Confidence            7899999999999999855544 469999999999999999986  7889999999999999995 56666655577777


Q ss_pred             cCc----EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185          158 KLE----ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE  225 (657)
Q Consensus       158 ~L~----~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~  225 (657)
                      +|+    +|++++|.+.            ..+.......+|+.|++++|.+..++..  ..+++|+.|++.+++
T Consensus       174 ~L~~l~l~L~ls~n~l~------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             TCTTCCEEEECCSSCCC------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hccccceeeecCCCccc------------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            777    8999998765            2333344445899999999999888765  568999999998764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=6e-19  Score=172.37  Aligned_cols=201  Identities=21%  Similarity=0.334  Sum_probs=168.4

Q ss_pred             CCCCC-CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCc
Q 006185           12 SINTF-EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLR   89 (657)
Q Consensus        12 ~~~~~-~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~   89 (657)
                      ..+.+ ...++++++++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|.++.+|.. +.++++|+
T Consensus        10 ~~C~c~~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           10 GVCSCNNNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             CSBEEETTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCCEeCCCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            34444 458899999999999987654 6899999999999988887789999999999999999888765 58899999


Q ss_pred             EEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185           90 TLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus        90 ~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~  167 (657)
                      +|++++|.....+ ..+.++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|...+..+++|++|++++|
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC
Confidence            9999999955555 5678999999999999999977654 78999999999999 4677888776889999999999998


Q ss_pred             ccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185          168 FCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE  225 (657)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~  225 (657)
                      .+..           .....+..+++|+.|++++|.+..++..  ..+++|+.|++.+++
T Consensus       168 ~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          168 QLKR-----------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCcE-----------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            7642           3334578899999999999998877764  567899999998774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=1e-18  Score=189.01  Aligned_cols=255  Identities=20%  Similarity=0.123  Sum_probs=188.7

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      ++++++.+|... .++|++|++++|.++.+|.  .+++|++|++++|.+..+|.    .+++|++|++++|.++.+|.  
T Consensus        48 s~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~--  118 (622)
T 3g06_A           48 GESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA--  118 (622)
T ss_dssp             CSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC--
T ss_pred             cCCCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC--
Confidence            456788888522 3899999999999999998  67899999999999998887    67999999999999999887  


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                       .+.+|++|++++|.....|..   +++|++|++++|.++.+|..   +.+|+.|++++ +.++.+|    ..+++|+.|
T Consensus       119 -~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~-N~l~~l~----~~~~~L~~L  186 (622)
T 3g06_A          119 -LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLP----MLPSGLQEL  186 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCC----CCCTTCCEE
T ss_pred             -CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCC-CCCCCCc----ccCCCCcEE
Confidence             678999999999995555653   48999999999999998864   46899999999 5677787    457899999


Q ss_pred             EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccc
Q 006185          163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNK  242 (657)
Q Consensus       163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  242 (657)
                      ++++|.+.            ..+.   ..++|+.|++++|.+..++..  +++|+.|+++++                  
T Consensus       187 ~Ls~N~l~------------~l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N------------------  231 (622)
T 3g06_A          187 SVSDNQLA------------SLPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN------------------  231 (622)
T ss_dssp             ECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS------------------
T ss_pred             ECCCCCCC------------CCCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCC------------------
Confidence            99999764            1221   247899999999998777654  456666665543                  


Q ss_pred             cCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccccccccc
Q 006185          243 RCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTL  322 (657)
Q Consensus       243 ~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  322 (657)
                                                           .++.+.     ..+++|+.|++++| .++.++.        .+
T Consensus       232 -------------------------------------~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~--------~~  260 (622)
T 3g06_A          232 -------------------------------------RLTSLP-----VLPSELKELMVSGN-RLTSLPM--------LP  260 (622)
T ss_dssp             -------------------------------------CCSCCC-----CCCTTCCEEECCSS-CCSCCCC--------CC
T ss_pred             -------------------------------------ccCcCC-----CCCCcCcEEECCCC-CCCcCCc--------cc
Confidence                                                 122111     12466777777777 5554443        26


Q ss_pred             ccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccch
Q 006185          323 RKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPS  369 (657)
Q Consensus       323 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~  369 (657)
                      ++|+.|++++|. ++.+.   .....+++|+.|++++++ +.+..|.
T Consensus       261 ~~L~~L~Ls~N~-L~~lp---~~l~~l~~L~~L~L~~N~-l~~~~~~  302 (622)
T 3g06_A          261 SGLLSLSVYRNQ-LTRLP---ESLIHLSSETTVNLEGNP-LSERTLQ  302 (622)
T ss_dssp             TTCCEEECCSSC-CCSCC---GGGGGSCTTCEEECCSCC-CCHHHHH
T ss_pred             ccCcEEeCCCCC-CCcCC---HHHhhccccCEEEecCCC-CCCcCHH
Confidence            777777777774 33221   012367888888888855 4443333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.1e-18  Score=170.63  Aligned_cols=188  Identities=24%  Similarity=0.367  Sum_probs=161.5

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-   80 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-   80 (657)
                      +++++.+|.. ..+++++|++++|.++.++.. + .+++|++|++++|.+..++..+|.++++|++|++++|.++.+|. 
T Consensus        25 ~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  103 (270)
T 2o6q_A           25 SKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG  103 (270)
T ss_dssp             TSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence            4667788842 237899999999999988864 3 89999999999999999999989999999999999999988775 


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRK  158 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~  158 (657)
                      .+.++++|++|++++|.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...+.++++
T Consensus       104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred             HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence            5689999999999999955554 5689999999999999999988876 89999999999999 4677787766889999


Q ss_pred             CcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          159 LEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       159 L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      |++|++++|.+..           .....+..+++|+.|++++|..
T Consensus       183 L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          183 LKTLKLDNNQLKR-----------VPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCEEECCCCcCCc-----------CCHHHhccccCCCEEEecCCCe
Confidence            9999999997652           3334578899999999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=5.2e-22  Score=210.74  Aligned_cols=179  Identities=17%  Similarity=0.133  Sum_probs=101.6

Q ss_pred             CCccEEEccCCCccccC--CCC-CCCCCcEEEecCCcCcC-----CCchhhcCCCCccEEEecCCcCCC-CCccc-cCCC
Q 006185           17 EDLTGISLMFNDIHEVP--DGL-ECPKLQALFLQKNHLLV-----IPDPFFQGMKDLKVLDLGGIRMVS-PPSSL-SFLS   86 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~--~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~-~~l~   86 (657)
                      +++++|++++|.++..+  ..+ .+++|++|++++|.+..     ++. .+..+++|++|++++|.++. .+..+ ..+.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            56777888777776432  212 56778888888777652     222 35677778888887777643 12222 2333


Q ss_pred             ----CCcEEEccCCCCCC-----CCcccCCCCCCCEEEeeCCCCCcc-cc----c-ccCCCCCCEEEccCCCCCCC----
Q 006185           87 ----NLRTLRLDYCNHLP-----DLSLIGELSGLEILDLSKSDVNEI-PV----S-FGRLSHLRLLDLTDCYNLEL----  147 (657)
Q Consensus        87 ----~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~l-p~----~-i~~l~~L~~L~l~~c~~~~~----  147 (657)
                          +|++|++++|....     .+..+.++++|++|++++|.++.. +.    . ....++|++|++++|.....    
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                57777777776321     146677777777777777776521 21    1 22345677777777532221    


Q ss_pred             CchhHhhcCccCcEEEcccCccccccccccccccccchhhhc-CCCCccEEEeecCCC
Q 006185          148 IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG-ALSRLTSLHIDIPKG  204 (657)
Q Consensus       148 ~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~  204 (657)
                      ++.. +..+++|++|++++|.+.....       ......+. ..++|+.|++++|.+
T Consensus       162 l~~~-l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          162 LASV-LRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             HHHH-HHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             HHHH-HhhCCCCCEEECcCCCcchHHH-------HHHHHHHhcCCCCceEEEccCCCC
Confidence            1222 5566777777777765432000       01111221 345677777766654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=2e-19  Score=172.45  Aligned_cols=202  Identities=15%  Similarity=0.229  Sum_probs=167.5

Q ss_pred             CCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCc-CcCCCchhhcCCCCccEEEecC-CcCCCCC-
Q 006185            5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNH-LLVIPDPFFQGMKDLKVLDLGG-IRMVSPP-   79 (657)
Q Consensus         5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp-   79 (657)
                      .+++++|.  ..+++++|++++|.++.++...  .+++|++|++++|. +..+++..|.++++|++|++++ |.++.++ 
T Consensus        21 ~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           21 KDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            34778887  4569999999999999888743  89999999999997 8888887789999999999998 8898876 


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCcccCCCCCCC---EEEeeCC-CCCccccc-ccCCCCCC-EEEccCCCCCCCCchhHh
Q 006185           80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLE---ILDLSKS-DVNEIPVS-FGRLSHLR-LLDLTDCYNLELIPPGVL  153 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~l~~c~~~~~~~~~~~  153 (657)
                      ..|.++++|++|++++|.....|. ++.+.+|+   +|++++| .++.+|.. +.++++|+ +|++++ +.++.+|..++
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~  176 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAF  176 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhc
Confidence            578899999999999998555554 88888888   9999999 89988765 88999999 999999 45668887744


Q ss_pred             hcCccCcEEEcccCc-cccccccccccccccchhhhcCC-CCccEEEeecCCCccCCCCCCCCCccEEEEEE
Q 006185          154 SRLRKLEELYMSHSF-CHWQFESEEDTRSNAKFIELGAL-SRLTSLHIDIPKGEIMPSDMSLPNLTSFSITI  223 (657)
Q Consensus       154 ~~l~~L~~L~l~~~~-~~~~~~g~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  223 (657)
                      .. ++|++|++++|. +..           .....+..+ ++|+.|++++|.+..++.. .+++|+.|.+.+
T Consensus       177 ~~-~~L~~L~L~~n~~l~~-----------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~  235 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTV-----------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARN  235 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCE-----------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTT
T ss_pred             CC-CCCCEEEcCCCCCccc-----------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccC
Confidence            44 899999999984 542           234557788 8999999999998888776 688899888754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=1.1e-18  Score=173.80  Aligned_cols=184  Identities=24%  Similarity=0.340  Sum_probs=161.4

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS   83 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~   83 (657)
                      +++++++|.+..+++|++|++++|.++.++....+++|++|++++|.+..++.  |..+++|++|++++|.++.++. +.
T Consensus        50 ~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~  126 (308)
T 1h6u_A           50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LA  126 (308)
T ss_dssp             TSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GT
T ss_pred             CCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hc
Confidence            56788889999999999999999999988874489999999999999988764  7999999999999999998875 89


Q ss_pred             CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185           84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY  163 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~  163 (657)
                      .+++|++|++++|. ++....++++++|++|++++|.++.++. +.++++|++|++++| .++.++.  +..+++|++|+
T Consensus       127 ~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~  201 (308)
T 1h6u_A          127 GLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVH  201 (308)
T ss_dssp             TCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEE
T ss_pred             CCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEE
Confidence            99999999999998 5554459999999999999999998887 999999999999994 5777776  79999999999


Q ss_pred             cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185          164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP  208 (657)
Q Consensus       164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  208 (657)
                      +++|.+.            ..+ .+..+++|+.|++++|.+...+
T Consensus       202 L~~N~l~------------~~~-~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          202 LKNNQIS------------DVS-PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CTTSCCC------------BCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred             ccCCccC------------ccc-cccCCCCCCEEEccCCeeecCC
Confidence            9999764            222 4889999999999999875544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=3.8e-21  Score=204.13  Aligned_cols=363  Identities=18%  Similarity=0.118  Sum_probs=227.2

Q ss_pred             CCCCCCccEEEccCCCcc-----ccCCCC-CCCCCcEEEecCCcCcC-CCchhhcCCC----CccEEEecCCcCC-----
Q 006185           13 INTFEDLTGISLMFNDIH-----EVPDGL-ECPKLQALFLQKNHLLV-IPDPFFQGMK----DLKVLDLGGIRMV-----   76 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~l~----~Lr~L~L~~~~~~-----   76 (657)
                      +..+++|++|++++|.++     .++..+ .+++|++|++++|.+.+ .+..++..++    +|++|++++|+++     
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            567889999999999987     345544 78999999999998873 3444556666    7999999999987     


Q ss_pred             CCCccccCCCCCcEEEccCCCCCCC--Ccc-----cCCCCCCCEEEeeCCCCCc-----ccccccCCCCCCEEEccCCCC
Q 006185           77 SPPSSLSFLSNLRTLRLDYCNHLPD--LSL-----IGELSGLEILDLSKSDVNE-----IPVSFGRLSHLRLLDLTDCYN  144 (657)
Q Consensus        77 ~lp~~~~~l~~L~~L~l~~~~~~~~--~~~-----~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~  144 (657)
                      .++..+.++++|++|++++|. ++.  +..     ....++|++|++++|.++.     ++..+..+++|++|++++|. 
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-  181 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-  181 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred             HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence            468889999999999999998 432  222     2346789999999999884     46678889999999999965 


Q ss_pred             CCCCchhHhh-----cCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC-----CC--CC
Q 006185          145 LELIPPGVLS-----RLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP-----SD--MS  212 (657)
Q Consensus       145 ~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~--~~  212 (657)
                      ++......+.     ..++|++|++++|.+....       ....+..+..+++|++|++++|.+....     ..  ..
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~  254 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP  254 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH-------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence            4433222233     3669999999999764311       1135667788999999999998763321     11  23


Q ss_pred             CCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccc-ccc--
Q 006185          213 LPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFS-NLA--  289 (657)
Q Consensus       213 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~l~--  289 (657)
                      +++|+.|+++++.-..                         ..+..++..+... ++|+.|+++++. +.+..+ .+.  
T Consensus       255 ~~~L~~L~L~~n~l~~-------------------------~~~~~l~~~l~~~-~~L~~L~Ls~n~-i~~~~~~~l~~~  307 (461)
T 1z7x_W          255 SSRLRTLWIWECGITA-------------------------KGCGDLCRVLRAK-ESLKELSLAGNE-LGDEGARLLCET  307 (461)
T ss_dssp             TCCCCEEECTTSCCCH-------------------------HHHHHHHHHHHHC-TTCCEEECTTCC-CHHHHHHHHHHH
T ss_pred             CCCceEEECcCCCCCH-------------------------HHHHHHHHHHhhC-CCcceEECCCCC-CchHHHHHHHHH
Confidence            5677777776542111                         0111234443333 667777776662 222111 010  


Q ss_pred             -ccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCC---CCCCCccEEEEecCCCccc
Q 006185          290 -NDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPA---GCLSNVKRLDVVGCGSMLK  365 (657)
Q Consensus       290 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~  365 (657)
                       ....++|++|++++|. +..............+++|++|+++++. +.+.....+..   ...++|++|++++|. +++
T Consensus       308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~  384 (461)
T 1z7x_W          308 LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSD  384 (461)
T ss_dssp             HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCH
T ss_pred             hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CCh
Confidence             0123578888888773 3211000000022346788888888874 33221111111   125789999999974 553


Q ss_pred             ----ccchhHHHhcccCcEEEEcccccceeeeeccccccccccc-ccCCcccEEecCCCc
Q 006185          366 ----ILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEET-ELFSSLEKLTLIDLP  420 (657)
Q Consensus       366 ----~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~  420 (657)
                          .++..+ ..+++|++|++++++ +...    +.......+ ...++|+.|.+.++.
T Consensus       385 ~~~~~l~~~l-~~~~~L~~L~l~~N~-i~~~----~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          385 SSCSSLAATL-LANHSLRELDLSNNC-LGDA----GILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHHHHHHH-HHCCCCCEEECCSSS-CCHH----HHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             hhHHHHHHHH-HhCCCccEEECCCCC-CCHH----HHHHHHHHhccCCcchhheeecccc
Confidence                234333 568999999999864 2211    100001111 124568888887764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=1.4e-18  Score=169.89  Aligned_cols=199  Identities=23%  Similarity=0.286  Sum_probs=163.7

Q ss_pred             CCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-ccc
Q 006185            5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLS   83 (657)
Q Consensus         5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~   83 (657)
                      ..+.+......+++|+.|++++|.++.++....+++|++|++++|.+..++.  +.++++|++|++++|.++.++. .++
T Consensus        29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~  106 (272)
T 3rfs_A           29 KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFD  106 (272)
T ss_dssp             SCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhc
Confidence            3445555677889999999999999988876689999999999999887653  7899999999999999988765 478


Q ss_pred             CCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcE
Q 006185           84 FLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEE  161 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~  161 (657)
                      ++++|++|++++|.....+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...++.+++|++
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCE
Confidence            9999999999999955554 4589999999999999999988765 689999999999995 566777776789999999


Q ss_pred             EEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEE
Q 006185          162 LYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSIT  222 (657)
Q Consensus       162 L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~  222 (657)
                      |++++|.+..           ..+..+..+++|+.|++++|...     ..+++|+.+.++
T Consensus       186 L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~  230 (272)
T 3rfs_A          186 LRLYQNQLKS-----------VPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEW  230 (272)
T ss_dssp             EECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCBC-----CCTTTTHHHHHH
T ss_pred             EECCCCcCCc-----------cCHHHHhCCcCCCEEEccCCCcc-----ccCcHHHHHHHH
Confidence            9999997652           34455788999999999998753     235566666544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=3.9e-18  Score=168.00  Aligned_cols=185  Identities=20%  Similarity=0.164  Sum_probs=161.3

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      +++++.+|.- ..+.+++|++++|.++.++.. + .+++|++|++++|.+..++.  .+.+++|++|++++|.++.+|..
T Consensus        19 ~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~   95 (290)
T 1p9a_G           19 KRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLL   95 (290)
T ss_dssp             TSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCCcCchh
Confidence            5677888842 248999999999999877543 3 89999999999999997776  37899999999999999999999


Q ss_pred             ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185           82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL  159 (657)
Q Consensus        82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L  159 (657)
                      +..+++|++|++++|.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+|.+++.++++|
T Consensus        96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENL  174 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTC
T ss_pred             hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCC
Confidence            999999999999999966655 6799999999999999999988776 68999999999999 56788998877899999


Q ss_pred             cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      ++|++++|.+.            ..+..+....+|+.+++.+|..
T Consensus       175 ~~L~L~~N~l~------------~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          175 DTLLLQENSLY------------TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CEEECCSSCCC------------CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CEEECCCCcCC------------ccChhhcccccCCeEEeCCCCc
Confidence            99999999775            5666777888999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=3.9e-18  Score=166.77  Aligned_cols=196  Identities=20%  Similarity=0.276  Sum_probs=160.8

Q ss_pred             CCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185           15 TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD   94 (657)
Q Consensus        15 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~   94 (657)
                      .+.++..+++..+.+.++.....+++|++|+++++.+..++.  +..+++|++|++++|.++.++ .+.++++|++|+++
T Consensus        17 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred             hHHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence            344555666777777666555578899999999999887775  688999999999999998764 78899999999999


Q ss_pred             CCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccc
Q 006185           95 YCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQ  172 (657)
Q Consensus        95 ~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  172 (657)
                      +|.....+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...++++++|++|++++|.+.. 
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  171 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS-  171 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc-
Confidence            99855544 5579999999999999999987765 789999999999995 6777877767899999999999997642 


Q ss_pred             cccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185          173 FESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE  225 (657)
Q Consensus       173 ~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~  225 (657)
                                ..+..++.+++|+.|++++|.+..++..  ..+++|+.|++.++.
T Consensus       172 ----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          172 ----------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             ----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence                      3344578899999999999998777764  678999999998774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.8e-18  Score=169.26  Aligned_cols=178  Identities=28%  Similarity=0.353  Sum_probs=118.1

Q ss_pred             CCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCC
Q 006185            7 LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLS   86 (657)
Q Consensus         7 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~   86 (657)
                      +.++...+.+++|++|++++|.++.++....+++|++|++++|.+..+++  +.++++|++|++++|.++.++. +..++
T Consensus        36 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~  112 (291)
T 1h6t_A           36 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLK  112 (291)
T ss_dssp             TTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred             cccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCC
Confidence            34444455667777777777777766654467777777777777776665  5677777777777777766544 67777


Q ss_pred             CCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185           87 NLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH  166 (657)
Q Consensus        87 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~  166 (657)
                      +|++|++++|. ++.+..++.+++|++|++++|.++.+ ..++++++|++|++++| .++.++.  +..+++|++|++++
T Consensus       113 ~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          113 KLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSK  187 (291)
T ss_dssp             TCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCC
Confidence            77777777776 44455667777777777777777766 45677777777777774 4555554  66777777777777


Q ss_pred             CccccccccccccccccchhhhcCCCCccEEEeecCCCc
Q 006185          167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE  205 (657)
Q Consensus       167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (657)
                      |.+.             ....+..+++|+.|++++|.+.
T Consensus       188 N~i~-------------~l~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          188 NHIS-------------DLRALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             SCCC-------------BCGGGTTCTTCSEEEEEEEEEE
T ss_pred             CcCC-------------CChhhccCCCCCEEECcCCccc
Confidence            6543             1233666677777777766543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=1.1e-19  Score=182.22  Aligned_cols=238  Identities=18%  Similarity=0.159  Sum_probs=172.8

Q ss_pred             CCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185           14 NTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL   91 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L   91 (657)
                      ..+++|++|++++|.++.++.. + .+++|++|++++|.+..+++  |..+++|++|++++|.++.++    ..++|++|
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L  104 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL  104 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence            4567999999999999987643 3 89999999999999886665  789999999999999987655    34899999


Q ss_pred             EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHh-hcCccCcEEEcccCcc
Q 006185           92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVL-SRLRKLEELYMSHSFC  169 (657)
Q Consensus        92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~-~~l~~L~~L~l~~~~~  169 (657)
                      ++++|.....+.  ..+++|++|++++|.++.++. .++.+++|++|++++| .+..++...+ ..+++|++|++++|.+
T Consensus       105 ~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcC
Confidence            999998443332  347889999999999997754 6888999999999995 4555443324 4789999999999876


Q ss_pred             ccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhccc-ccCcce
Q 006185          170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFN-KRCSRA  247 (657)
Q Consensus       170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~  247 (657)
                      ..            . .....+++|+.|++++|.+..++.. ..+++|+.|+++++.-...       ++.+. .+.++.
T Consensus       182 ~~------------~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-------~~~~~~l~~L~~  241 (317)
T 3o53_A          182 YD------------V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-------EKALRFSQNLEH  241 (317)
T ss_dssp             CE------------E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-------CTTCCCCTTCCE
T ss_pred             cc------------c-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-------hhHhhcCCCCCE
Confidence            42            1 2334588999999999988777655 5678899998887643221       22222 256677


Q ss_pred             EEeecccch-hhhHHHHHHHHccccEEEEeecccc
Q 006185          248 MGLSQDMRI-SALHSWIKNLLLRSEILALIEVNDL  281 (657)
Q Consensus       248 l~l~~~~~~-~~l~~~~~~~~~~L~~L~L~~~~~l  281 (657)
                      +++++|.-. ..+|.++... ++|+.+++.++..+
T Consensus       242 L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~~~~~l  275 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKL  275 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             EEccCCCccCcCHHHHHhcc-ccceEEECCCchhc
Confidence            777766443 3455555443 55666665555433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=2e-17  Score=159.57  Aligned_cols=175  Identities=23%  Similarity=0.322  Sum_probs=147.7

Q ss_pred             CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccC
Q 006185           17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDY   95 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~   95 (657)
                      ...++++++++.++.+|.... +++++|++++|.+..+++..|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            567899999999999997764 68999999999999888877899999999999999998765 4588999999999999


Q ss_pred             CCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185           96 CNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        96 ~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      |.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...++++++|++|++++|.+..  
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--  169 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQS--  169 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCc--
Confidence            9955554 6778999999999999999988876 68899999999999 46778877668899999999999987642  


Q ss_pred             ccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          174 ESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                               ..+..+..+++|+.|++++|..
T Consensus       170 ---------~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          170 ---------VPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             ---------CCTTTTTTCTTCCEEECCSCCB
T ss_pred             ---------cCHHHHhCCCCCCEEEeeCCce
Confidence                     3334677888888888888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=3.7e-18  Score=181.05  Aligned_cols=167  Identities=17%  Similarity=0.168  Sum_probs=119.0

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL  116 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  116 (657)
                      .+++|++|++++|.+..+++..|..+++|++|+|++|.++..+. ++.+++|++|++++|.....+    ..++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence            44588888888888887777667888888888888888875554 888888888888888733222    3378888888


Q ss_pred             eCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhc-CCCCcc
Q 006185          117 SKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG-ALSRLT  195 (657)
Q Consensus       117 ~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~-~l~~L~  195 (657)
                      ++|.++.+|..  .+++|++|++++| .++.+++..++.+++|++|++++|.+..           ..+..+. .+++|+
T Consensus       107 ~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~l~~~l~~L~  172 (487)
T 3oja_A          107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAELAASSDTLE  172 (487)
T ss_dssp             CSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE-----------EEGGGGGGGTTTCC
T ss_pred             cCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC-----------cChHHHhhhCCccc
Confidence            88888877653  5678888888885 4555544337888888888888886542           3445554 678888


Q ss_pred             EEEeecCCCccCCCCCCCCCccEEEEE
Q 006185          196 SLHIDIPKGEIMPSDMSLPNLTSFSIT  222 (657)
Q Consensus       196 ~L~l~~~~~~~~~~~~~l~~L~~L~l~  222 (657)
                      .|++++|.+..++....+++|+.|+++
T Consensus       173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls  199 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQVVFAKLKTLDLS  199 (487)
T ss_dssp             EEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred             EEecCCCccccccccccCCCCCEEECC
Confidence            888888776555444334444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=1e-18  Score=174.58  Aligned_cols=199  Identities=17%  Similarity=0.187  Sum_probs=148.5

Q ss_pred             CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCc--CCCchhh------cCCCCccEEEecCCcCC-CCCccc
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLL--VIPDPFF------QGMKDLKVLDLGGIRMV-SPPSSL   82 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~--~~~~~~~------~~l~~Lr~L~L~~~~~~-~lp~~~   82 (657)
                      .+..++|+.|++++|.+ .+|... ..  |++|++++|.+.  .++..++      .++++|++|++++|.++ .+|..+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            34567788889999988 777654 32  888899988875  4665431      26899999999999986 688876


Q ss_pred             --cCCCCCcEEEccCCCCCCCCcccCCC-----CCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCCC--CchhH
Q 006185           83 --SFLSNLRTLRLDYCNHLPDLSLIGEL-----SGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLEL--IPPGV  152 (657)
Q Consensus        83 --~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~~--~~~~~  152 (657)
                        ..+++|++|++++|.....|..++++     ++|++|++++|.++.++ ..++++++|++|++++|...+.  ++.. 
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-
T ss_pred             HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-
Confidence              89999999999999865567777766     89999999999999776 6799999999999999654443  2333 


Q ss_pred             h--hcCccCcEEEcccCccccccccccccccccch-hhhcCCCCccEEEeecCCCccCCC---CCCCCCccEEEEEEc
Q 006185          153 L--SRLRKLEELYMSHSFCHWQFESEEDTRSNAKF-IELGALSRLTSLHIDIPKGEIMPS---DMSLPNLTSFSITIG  224 (657)
Q Consensus       153 ~--~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~  224 (657)
                      +  +++++|++|++++|.+...         ...+ ..+..+++|+.|++++|.+...+.   ...+++|+.|+++++
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETP---------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT  263 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCH---------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred             HHhccCCCCCEEECCCCcCcch---------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence            3  7899999999999876410         0122 334578899999999998866442   134566666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=1.1e-17  Score=164.05  Aligned_cols=189  Identities=21%  Similarity=0.247  Sum_probs=157.5

Q ss_pred             CCCCCCCC--CCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC
Q 006185            4 GVELKDWP--SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP   79 (657)
Q Consensus         4 ~~~l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp   79 (657)
                      ++.+.+++  .+..+++|++|++++|.++.++...  .+++|++|++++|.+..++...|.++++|++|++++|.+..++
T Consensus        37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  116 (276)
T 2z62_A           37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence            45666666  5788999999999999999887643  8999999999999999888777899999999999999998776


Q ss_pred             c-cccCCCCCcEEEccCCCCCC--CCcccCCCCCCCEEEeeCCCCCccc-ccccCCCCCC----EEEccCCCCCCCCchh
Q 006185           80 S-SLSFLSNLRTLRLDYCNHLP--DLSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLR----LLDLTDCYNLELIPPG  151 (657)
Q Consensus        80 ~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~----~L~l~~c~~~~~~~~~  151 (657)
                      . .++++++|++|++++|....  .|..++++++|++|++++|.++.++ ..+..+.+|+    +|++++ +.++.++..
T Consensus       117 ~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~  195 (276)
T 2z62_A          117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPG  195 (276)
T ss_dssp             TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECTT
T ss_pred             chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC-CcccccCcc
Confidence            5 79999999999999998444  4789999999999999999999765 4566666666    899999 567777766


Q ss_pred             HhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc
Q 006185          152 VLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE  205 (657)
Q Consensus       152 ~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (657)
                       .....+|++|++++|.+..           .....+..+++|+.|++++|...
T Consensus       196 -~~~~~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          196 -AFKEIRLKELALDTNQLKS-----------VPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             -SSCSCCEEEEECCSSCCSC-----------CCTTTTTTCCSCCEEECCSSCBC
T ss_pred             -ccCCCcccEEECCCCceee-----------cCHhHhcccccccEEEccCCccc
Confidence             4556689999999997652           23344688999999999998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=6.1e-18  Score=162.07  Aligned_cols=184  Identities=14%  Similarity=0.110  Sum_probs=155.9

Q ss_pred             CCCCCCCCC--CCCCCCccEEEccCCC-ccccCCCC--CCCCCcEEEecC-CcCcCCCchhhcCCCCccEEEecCCcCCC
Q 006185            4 GVELKDWPS--INTFEDLTGISLMFND-IHEVPDGL--ECPKLQALFLQK-NHLLVIPDPFFQGMKDLKVLDLGGIRMVS   77 (657)
Q Consensus         4 ~~~l~~~~~--~~~~~~L~~L~l~~~~-~~~l~~~~--~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~   77 (657)
                      ++.++.+|.  +..+++|++|++++|. ++.++...  .+++|++|++++ |.+..++...|.++++|++|++++|.++.
T Consensus        40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred             CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence            456677764  7889999999999997 99998754  899999999998 89998988889999999999999999999


Q ss_pred             CCccccCCCCCc---EEEccCC-CCCCCC-cccCCCCCCC-EEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchh
Q 006185           78 PPSSLSFLSNLR---TLRLDYC-NHLPDL-SLIGELSGLE-ILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPG  151 (657)
Q Consensus        78 lp~~~~~l~~L~---~L~l~~~-~~~~~~-~~~~~l~~L~-~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~  151 (657)
                      +|. +..+.+|+   +|++++| .....+ ..+.++++|+ +|++++|.++.+|......++|++|++++|..++.++..
T Consensus       120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred             ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence            987 88888888   9999999 633444 5689999999 999999999999887655689999999996568888877


Q ss_pred             HhhcC-ccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecC
Q 006185          152 VLSRL-RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIP  202 (657)
Q Consensus       152 ~~~~l-~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~  202 (657)
                      .+..+ ++|++|++++|.+.            ..+..  .+++|+.|++..+
T Consensus       199 ~~~~l~~~L~~L~l~~N~l~------------~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          199 AFGGVYSGPSLLDVSQTSVT------------ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTCSBCCSEEECTTCCCC------------CCCCT--TCTTCSEEECTTC
T ss_pred             HhhccccCCcEEECCCCccc------------cCChh--HhccCceeeccCc
Confidence            78899 99999999998764            22222  6788999988764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=6.2e-17  Score=156.18  Aligned_cols=166  Identities=25%  Similarity=0.357  Sum_probs=143.9

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-   79 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-   79 (657)
                      ++.+++.+|.- ..+.+++|++++|.++.++...  .+++|++|++++|.+..+++..|.++++|++|++++|+++.+| 
T Consensus        22 ~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  100 (251)
T 3m19_A           22 QGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL  100 (251)
T ss_dssp             TTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence            35677788842 2379999999999999887643  8999999999999999888888899999999999999998876 


Q ss_pred             ccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           80 SSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      ..+..+++|++|++++|.....+ ..++++++|++|++++|.++.+|. .++++++|++|++++ +.++.++...+.+++
T Consensus       101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG  179 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred             hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence            46789999999999999955555 457899999999999999998887 599999999999999 567778776689999


Q ss_pred             cCcEEEcccCccc
Q 006185          158 KLEELYMSHSFCH  170 (657)
Q Consensus       158 ~L~~L~l~~~~~~  170 (657)
                      +|++|++++|.+.
T Consensus       180 ~L~~L~l~~N~~~  192 (251)
T 3m19_A          180 KLQTITLFGNQFD  192 (251)
T ss_dssp             TCCEEECCSCCBC
T ss_pred             CCCEEEeeCCcee
Confidence            9999999999754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=5.4e-18  Score=169.33  Aligned_cols=215  Identities=19%  Similarity=0.236  Sum_probs=142.5

Q ss_pred             ccEEEccCCCccc--cCCCC--------CCCCCcEEEecCCcCc-CCCchhh-cCCCCccEEEecCCcCCCCCccccCC-
Q 006185           19 LTGISLMFNDIHE--VPDGL--------ECPKLQALFLQKNHLL-VIPDPFF-QGMKDLKVLDLGGIRMVSPPSSLSFL-   85 (657)
Q Consensus        19 L~~L~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~Lr~L~L~~~~~~~lp~~~~~l-   85 (657)
                      +++|++++|.++.  ++...        .+++|++|++++|.+. .+|..+| ..+++|++|++++|+++..|..++.+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            7777777777753  44322        3777888888888777 5666543 77788888888888877667766666 


Q ss_pred             ----CCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc---ccccc--cCCCCCCEEEccCCCCCC---CCchhH
Q 006185           86 ----SNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE---IPVSF--GRLSHLRLLDLTDCYNLE---LIPPGV  152 (657)
Q Consensus        86 ----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~l~~c~~~~---~~~~~~  152 (657)
                          ++|++|++++|.....+ ..++++++|++|++++|.+..   +|..+  +++++|++|++++| .++   .++...
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  223 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSAL  223 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHH
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHH
Confidence                77888888888754444 677788888888888887652   34444  77788888888874 444   333343


Q ss_pred             hhcCccCcEEEcccCccccccccccccccccc-hhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhh
Q 006185          153 LSRLRKLEELYMSHSFCHWQFESEEDTRSNAK-FIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLND  231 (657)
Q Consensus       153 ~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  231 (657)
                      +..+++|++|++++|.+..           .. ...+..+++|+.|++++|.+..+|.... ++|+.|+++++.-...|.
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRD-----------AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCS-----------SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC
T ss_pred             HhcCCCCCEEECCCCcCCc-----------ccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh
Confidence            4567788888888776542           11 1334556778888888887777766644 677888877664333221


Q ss_pred             HHHHHhhcccccCcceEEeecc
Q 006185          232 FIELFLENFNKRCSRAMGLSQD  253 (657)
Q Consensus       232 ~~~~~~~~~~~~~l~~l~l~~~  253 (657)
                             -...+.++.+++++|
T Consensus       292 -------~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          292 -------PDELPQVGNLSLKGN  306 (312)
T ss_dssp             -------TTTSCEEEEEECTTC
T ss_pred             -------HhhCCCCCEEeccCC
Confidence                   112366777777766

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=6.8e-17  Score=159.26  Aligned_cols=189  Identities=22%  Similarity=0.269  Sum_probs=160.2

Q ss_pred             CCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccC
Q 006185           16 FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDY   95 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~   95 (657)
                      +.++..+.+..+.++++.....+++|++|++++|.+..++.  +..+++|++|++++|+++.++. +.++++|++|++++
T Consensus        23 l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           23 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence            34444456666666665544478899999999999988875  7899999999999999998887 99999999999999


Q ss_pred             CCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185           96 CNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES  175 (657)
Q Consensus        96 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g  175 (657)
                      |. ++.+..++++++|++|++++|.++.++ .+..+++|++|++++| .++.++.  +.++++|++|++++|.+.     
T Consensus       100 n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~-----  169 (291)
T 1h6t_A          100 NK-VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS-----  169 (291)
T ss_dssp             SC-CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC-----
T ss_pred             Cc-CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc-----
Confidence            98 666777999999999999999999874 6899999999999995 5666743  899999999999999764     


Q ss_pred             ccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcC
Q 006185          176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGE  225 (657)
Q Consensus       176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~  225 (657)
                             ... .+..+++|+.|++++|.+..++....+++|+.|++.++.
T Consensus       170 -------~~~-~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          170 -------DIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -------CCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             -------cch-hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence                   222 288999999999999999888777889999999999873

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=1.2e-17  Score=177.23  Aligned_cols=174  Identities=18%  Similarity=0.147  Sum_probs=140.3

Q ss_pred             CCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185           14 NTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL   91 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L   91 (657)
                      ..+++|++|++++|.++.++. .+ .+++|++|++++|.+...++  |..+++|++|++++|.++.+|.    .++|++|
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            345699999999999998764 34 89999999999999986666  7999999999999999876664    3899999


Q ss_pred             EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185           92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus        92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (657)
                      ++++|.....+.  ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|......+++|++|++++|.+.
T Consensus       105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            999999444443  3578999999999999976 5579999999999999965444445552348999999999999764


Q ss_pred             cccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185          171 WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP  208 (657)
Q Consensus       171 ~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  208 (657)
                      .             ......+++|+.|++++|.+..++
T Consensus       183 ~-------------~~~~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          183 D-------------VKGQVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             E-------------EECCCCCTTCCEEECCSSCCCEEC
T ss_pred             c-------------ccccccCCCCCEEECCCCCCCCCC
Confidence            2             133456899999999999875444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=4.5e-17  Score=175.97  Aligned_cols=183  Identities=27%  Similarity=0.349  Sum_probs=151.3

Q ss_pred             CCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccC
Q 006185            5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF   84 (657)
Q Consensus         5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~   84 (657)
                      ..+.++.....+++|+.|++++|.+..++....+++|++|++++|.+..+++  |..+++|++|+|++|.+..+| .+..
T Consensus        31 ~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~  107 (605)
T 1m9s_A           31 KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKD  107 (605)
T ss_dssp             SCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred             CCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhcc
Confidence            3445555667788999999999999988865589999999999999888777  789999999999999988876 6889


Q ss_pred             CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           85 LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        85 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                      +++|++|++++|. +..+..+..+++|+.|++++|.++.+ ..+..+++|++|++++| .+..++.  +..+++|++|++
T Consensus       108 l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~L  182 (605)
T 1m9s_A          108 LKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL  182 (605)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEEC
Confidence            9999999999998 55667788999999999999999887 57889999999999995 4566655  788999999999


Q ss_pred             ccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185          165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP  208 (657)
Q Consensus       165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  208 (657)
                      ++|.+.             .+..+..+++|+.|++++|.+...|
T Consensus       183 s~N~i~-------------~l~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          183 SKNHIS-------------DLRALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CSSCCC-------------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred             cCCCCC-------------CChHHccCCCCCEEEccCCcCcCCc
Confidence            998663             2246888899999999988765443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=1.3e-16  Score=162.10  Aligned_cols=156  Identities=20%  Similarity=0.208  Sum_probs=118.5

Q ss_pred             CCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CC-ccccCCCCCcE
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PP-SSLSFLSNLRT   90 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp-~~~~~l~~L~~   90 (657)
                      ++.|.. ++++.+++.+++||..+ .+++++|++++|.+..+|...|.++++|++|+|++|.+.+ +| ..|.++++|+.
T Consensus         6 ~C~C~~-~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X            6 ICHCSN-RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             SSEEET-TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             ccEeeC-CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            455543 67889999999999765 3689999999999999998888999999999999998754 55 46788888776


Q ss_pred             EE-ccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCc-cCcEEEccc
Q 006185           91 LR-LDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLR-KLEELYMSH  166 (657)
Q Consensus        91 L~-l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~-~L~~L~l~~  166 (657)
                      +. +.++..... |..+..+++|++|++++|.++.+|.. +....++..|++.++..+..++...+..+. .++.|++++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            44 444553333 47788999999999999998877653 556667888888887777777765455553 577777777


Q ss_pred             Cccc
Q 006185          167 SFCH  170 (657)
Q Consensus       167 ~~~~  170 (657)
                      |.+.
T Consensus       164 N~i~  167 (350)
T 4ay9_X          164 NGIQ  167 (350)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            7553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=6.2e-17  Score=161.56  Aligned_cols=217  Identities=13%  Similarity=0.103  Sum_probs=147.6

Q ss_pred             CCccEEEccCCCccc-----cCCCCCCCCCcEEEecCCcCc-CCCchhh-cCCCCccEEEecCCcCCC-CC----ccccC
Q 006185           17 EDLTGISLMFNDIHE-----VPDGLECPKLQALFLQKNHLL-VIPDPFF-QGMKDLKVLDLGGIRMVS-PP----SSLSF   84 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~Lr~L~L~~~~~~~-lp----~~~~~   84 (657)
                      ..++.+.+..+.++.     +.....+++|++|++++|.+. ..|..++ ..+++|++|++++|.++. .+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            456777887776641     222224567888888888887 4444433 788888888888888764 22    23456


Q ss_pred             CCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc---cccc--ccCCCCCCEEEccCCCCCCCCchh---Hhhc
Q 006185           85 LSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE---IPVS--FGRLSHLRLLDLTDCYNLELIPPG---VLSR  155 (657)
Q Consensus        85 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~---lp~~--i~~l~~L~~L~l~~c~~~~~~~~~---~~~~  155 (657)
                      +++|++|++++|.....+ ..++++++|++|++++|.+..   ++..  ++++++|++|++++| .++.++..   .++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhc
Confidence            888888888888854444 678888888888888888653   3332  467888888888885 45554432   3567


Q ss_pred             CccCcEEEcccCccccccccccccccccchhhhcCC---CCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhH
Q 006185          156 LRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGAL---SRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDF  232 (657)
Q Consensus       156 l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  232 (657)
                      +++|++|++++|.+..           ..+..+..+   ++|++|++++|.+..+|.... ++|+.|+++++.-...+. 
T Consensus       223 l~~L~~L~Ls~N~l~~-----------~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~-  289 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRA-----------TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ-  289 (310)
T ss_dssp             TCCCSSEECTTSCCCC-----------CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC-
T ss_pred             CCCCCEEECCCCCCCc-----------cchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch-
Confidence            7888888888886642           223444444   688888888888877776643 788888888774333211 


Q ss_pred             HHHHhhcccccCcceEEeecc
Q 006185          233 IELFLENFNKRCSRAMGLSQD  253 (657)
Q Consensus       233 ~~~~~~~~~~~~l~~l~l~~~  253 (657)
                            ....+.++.+++++|
T Consensus       290 ------~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          290 ------PDELPEVDNLTLDGN  304 (310)
T ss_dssp             ------TTSCCCCSCEECSST
T ss_pred             ------hhhCCCccEEECcCC
Confidence                  122377788888776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.9e-16  Score=153.44  Aligned_cols=174  Identities=18%  Similarity=0.144  Sum_probs=132.6

Q ss_pred             CCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEE
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLR   92 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~   92 (657)
                      ...+.++..++++.+.+++++....+++|++|++++|.+..++.  +..+++|++|++++|+++.++. +.++++|++|+
T Consensus        15 d~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             SHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             CHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            34566677778888888877744478888888888888887773  6788888888888888888777 88888888888


Q ss_pred             ccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccc
Q 006185           93 LDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQ  172 (657)
Q Consensus        93 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  172 (657)
                      +++|.....+. +.. .+|++|++++|.++.++ .+.++++|++|++++ +.++.++.  ++.+++|++|++++|.+.. 
T Consensus        92 L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~-  164 (263)
T 1xeu_A           92 VNRNRLKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN-  164 (263)
T ss_dssp             CCSSCCSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB-
T ss_pred             CCCCccCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc-
Confidence            88888433333 333 88888888888888775 588888888888888 45666763  7888888888888886641 


Q ss_pred             cccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185          173 FESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP  208 (657)
Q Consensus       173 ~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  208 (657)
                                  ...+..+++|+.|++++|.+...+
T Consensus       165 ------------~~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          165 ------------TGGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             ------------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred             ------------hHHhccCCCCCEEeCCCCcccCCc
Confidence                        256778888888888888765443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2e-16  Score=146.39  Aligned_cols=151  Identities=21%  Similarity=0.247  Sum_probs=98.3

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEE
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILD  115 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~  115 (657)
                      .+++|++|++++|.+..++.  +..+++|++|++++|.++.++ .+..+++|++|++++|.... .+..++++++|++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            55667777777777666663  566777777777777655443 56667777777777766322 356677777777777


Q ss_pred             eeCCCCCc-ccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCc
Q 006185          116 LSKSDVNE-IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRL  194 (657)
Q Consensus       116 l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L  194 (657)
                      +++|.++. .|..++++++|++|++++|..++.+|.  +..+++|++|++++|.+.            . ...+..+++|
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~------------~-~~~l~~l~~L  183 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH------------D-YRGIEDFPKL  183 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC------------C-CTTGGGCSSC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc------------C-hHHhccCCCC
Confidence            77777763 566677777777777777554666663  677777777777776543            1 2256667777


Q ss_pred             cEEEeecCCCc
Q 006185          195 TSLHIDIPKGE  205 (657)
Q Consensus       195 ~~L~l~~~~~~  205 (657)
                      +.|++++|.++
T Consensus       184 ~~L~l~~N~i~  194 (197)
T 4ezg_A          184 NQLYAFSQTIG  194 (197)
T ss_dssp             CEEEECBC---
T ss_pred             CEEEeeCcccC
Confidence            77777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4.2e-17  Score=158.13  Aligned_cols=156  Identities=22%  Similarity=0.289  Sum_probs=93.4

Q ss_pred             CCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccC
Q 006185            5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF   84 (657)
Q Consensus         5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~   84 (657)
                      +++++++.+..+++|++|++++|.++.++....+++|++|++++|.+..+++  |.++++|++|++++|+++.+|.... 
T Consensus        29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~-  105 (263)
T 1xeu_A           29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS-  105 (263)
T ss_dssp             SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred             CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-
Confidence            3445555555666666666666666666633356666666666666665555  5666666666666666665554332 


Q ss_pred             CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           85 LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        85 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                       .+|++|++++|. ++.+..++++++|++|++++|.++.+| .++.+++|++|++++| .+..++.  +..+++|+.|++
T Consensus       106 -~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~l  179 (263)
T 1xeu_A          106 -ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDL  179 (263)
T ss_dssp             -SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCTT--STTCCCCCEEEE
T ss_pred             -CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchHH--hccCCCCCEEeC
Confidence             666666666665 444445666666666666666666654 4666666666666663 3444422  566666666666


Q ss_pred             ccCcc
Q 006185          165 SHSFC  169 (657)
Q Consensus       165 ~~~~~  169 (657)
                      ++|.+
T Consensus       180 ~~N~~  184 (263)
T 1xeu_A          180 TGQKC  184 (263)
T ss_dssp             EEEEE
T ss_pred             CCCcc
Confidence            66543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=9e-16  Score=145.51  Aligned_cols=150  Identities=25%  Similarity=0.347  Sum_probs=129.4

Q ss_pred             ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEEEccCCC
Q 006185           19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~   97 (657)
                      .+.++++++.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|+++.+|. .|..+++|++|++++|.
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            5679999999999997654 789999999999998877778999999999999999988875 46899999999999998


Q ss_pred             CCCCC-cccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185           98 HLPDL-SLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus        98 ~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (657)
                      ....+ ..+..+++|++|++++|.++.+|..+.++++|++|++++ +.+..++...+..+++|++|++++|.+.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            55555 457899999999999999999999999999999999999 5677887766888999999999888653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=5.5e-16  Score=145.92  Aligned_cols=156  Identities=26%  Similarity=0.338  Sum_probs=128.2

Q ss_pred             CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCc
Q 006185           11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLR   89 (657)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~   89 (657)
                      |..+.+. -+.++++++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|+++.+ |..|.++++|+
T Consensus         6 P~~C~C~-~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B            6 PAACTCS-NNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             CTTSEEE-TTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred             CCCCEEC-CCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence            4445554 3688999999999987654 6899999999999988887789999999999999999865 77899999999


Q ss_pred             EEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185           90 TLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus        90 ~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~  167 (657)
                      +|++++|.....| ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.++.++.+.+..+++|++|++++|
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence            9999999855555 4468899999999999998876 45688899999999998 5677777666788888888888888


Q ss_pred             cc
Q 006185          168 FC  169 (657)
Q Consensus       168 ~~  169 (657)
                      .+
T Consensus       163 ~~  164 (220)
T 2v9t_B          163 PF  164 (220)
T ss_dssp             CE
T ss_pred             Cc
Confidence            54

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=5.7e-16  Score=144.82  Aligned_cols=148  Identities=26%  Similarity=0.407  Sum_probs=101.4

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEEEccCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~~   98 (657)
                      +.++++.+.++.+|... .++|++|++++|.+..++..+|.++++|++|++++|+++.+|. .+.++++|++|++++|..
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            56667777777776544 3467777777777777776666777777777777777776654 356777777777777774


Q ss_pred             CCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185           99 LPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus        99 ~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      ...+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...+.++++|++|++++|.+
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe
Confidence            4444 3467777777777777777766654 56777777777777 345566665566777777777777643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=4.4e-16  Score=145.56  Aligned_cols=158  Identities=22%  Similarity=0.286  Sum_probs=131.4

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      +.++..+| ....+++++|++++|.++.++...  .+++|++|++++|.+..++...|.++++|++|++++|+++.+|..
T Consensus        16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   94 (208)
T 2o6s_A           16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG   94 (208)
T ss_dssp             SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence            45667777 334679999999999999888754  899999999999999999888889999999999999999887754


Q ss_pred             -ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185           82 -LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRK  158 (657)
Q Consensus        82 -~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~  158 (657)
                       +.++++|++|++++|.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|..        .+.+++
T Consensus        95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~  166 (208)
T 2o6s_A           95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG  166 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTT
T ss_pred             HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCC
Confidence             689999999999999855555 4578999999999999999988776 78899999999999632        245667


Q ss_pred             CcEEEcccCccc
Q 006185          159 LEELYMSHSFCH  170 (657)
Q Consensus       159 L~~L~l~~~~~~  170 (657)
                      |+.|+++.+.+.
T Consensus       167 l~~L~~~~n~~~  178 (208)
T 2o6s_A          167 IRYLSEWINKHS  178 (208)
T ss_dssp             THHHHHHHHHCT
T ss_pred             HHHHHHHHHhCC
Confidence            888888777543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=5.6e-16  Score=143.32  Aligned_cols=150  Identities=21%  Similarity=0.245  Sum_probs=100.9

Q ss_pred             CCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCccccCCCCCcEEE
Q 006185           14 NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLR   92 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~~~l~~L~~L~   92 (657)
                      +.+++|++|++++|.++.++....+++|++|++++|.+..++.  |..+++|++|++++|.++. .|..++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4566777777777777777743367777777777776555442  5677777777777777753 566677777777777


Q ss_pred             ccCCCCCC-CCcccCCCCCCCEEEeeCCC-CCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185           93 LDYCNHLP-DLSLIGELSGLEILDLSKSD-VNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus        93 l~~~~~~~-~~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      +++|.... .|..++++++|++|++++|. ++.+| .+..+++|++|++++| .+..++.  +..+++|++|++++|.+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCccc
Confidence            77776332 35667777777777777776 66666 5777777777777773 4555552  67777777777777653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=6.3e-17  Score=174.87  Aligned_cols=190  Identities=22%  Similarity=0.268  Sum_probs=162.5

Q ss_pred             CCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185           15 TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD   94 (657)
Q Consensus        15 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~   94 (657)
                      .+..+..+.+..+.+.++.....+++|++|++++|.+..++.  |..+++|++|+|++|.+..++. +..+++|++|+|+
T Consensus        19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred             HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence            345566667777777776655578999999999999988875  7999999999999999998887 9999999999999


Q ss_pred             CCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccc
Q 006185           95 YCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFE  174 (657)
Q Consensus        95 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  174 (657)
                      +|. +..+..++.+++|++|++++|.+..++ .+..+++|+.|++++| .+..++.  +..+++|++|++++|.+.    
T Consensus        96 ~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~----  166 (605)
T 1m9s_A           96 ENK-IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS----  166 (605)
T ss_dssp             SSC-CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC----
T ss_pred             CCC-CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC----
Confidence            998 666678999999999999999999875 5999999999999995 5666643  899999999999999764    


Q ss_pred             cccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcC
Q 006185          175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGE  225 (657)
Q Consensus       175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~  225 (657)
                              ..+. +..+++|+.|++++|.+..++....+++|+.|++.++.
T Consensus       167 --------~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          167 --------DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             --------CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred             --------Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence                    2222 88999999999999999888777889999999998763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=1.7e-15  Score=142.59  Aligned_cols=156  Identities=19%  Similarity=0.268  Sum_probs=125.4

Q ss_pred             CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCC-CchhhcCCCCccEEEecCCcCCCCCc-cccCCCCC
Q 006185           11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVI-PDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNL   88 (657)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L   88 (657)
                      |..+.+. -+++++++|.++.+|..+ .+.+++|++++|.+..+ +..+|.++++|++|++++|.++.++. .|.++++|
T Consensus         6 P~~C~C~-~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A            6 PEKCRCE-GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             CTTCEEE-TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEC-CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            4455554 368999999999998765 34678999999999866 45667899999999999999987664 78999999


Q ss_pred             cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185           89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH  166 (657)
Q Consensus        89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~  166 (657)
                      ++|++++|.....+ ..++++++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++
T Consensus        84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecC
Confidence            99999999855554 5688999999999999998876 56688899999999998 456666444488888899998888


Q ss_pred             Ccc
Q 006185          167 SFC  169 (657)
Q Consensus       167 ~~~  169 (657)
                      |.+
T Consensus       163 N~l  165 (220)
T 2v70_A          163 NPF  165 (220)
T ss_dssp             CCE
T ss_pred             cCC
Confidence            864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=1.6e-15  Score=154.60  Aligned_cols=188  Identities=20%  Similarity=0.195  Sum_probs=146.1

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhc-CCCCccEEEecCCcCCCCC-cc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ-GMKDLKVLDLGGIRMVSPP-SS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~lp-~~   81 (657)
                      +.....-|..+.+. -++++++++.++.+|..+. +.+++|++++|.+..++...|. ++++|++|++++|+++.++ ..
T Consensus         6 ~~~~~~Cp~~C~C~-~~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~   83 (361)
T 2xot_A            6 GRSVVSCPANCLCA-SNILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA   83 (361)
T ss_dssp             -CCCTTCCTTCEEE-TTEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred             CCcCCCCCCCCEEC-CCEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence            33444456666664 3789999999999987652 4689999999999988887777 8999999999999998766 56


Q ss_pred             ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHh---hcC
Q 006185           82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVL---SRL  156 (657)
Q Consensus        82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~---~~l  156 (657)
                      |.++++|++|++++|.....+ ..+.++.+|++|++++|.++.+ |..+.++++|++|++++ +.+..+|...+   ..+
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l  162 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKL  162 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----C
T ss_pred             ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccC
Confidence            889999999999999844444 5688999999999999999876 55689999999999999 56778887755   578


Q ss_pred             ccCcEEEcccCccccccccccccccccchhhhcCCCC--ccEEEeecCCCc
Q 006185          157 RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR--LTSLHIDIPKGE  205 (657)
Q Consensus       157 ~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  205 (657)
                      ++|++|++++|.+..           .....+..++.  ++.|++.+|...
T Consensus       163 ~~L~~L~L~~N~l~~-----------l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          163 PKLMLLDLSSNKLKK-----------LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TTCCEEECCSSCCCC-----------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CcCCEEECCCCCCCc-----------cCHHHhhhccHhhcceEEecCCCcc
Confidence            999999999987652           23345666665  478899888754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=3.6e-16  Score=155.97  Aligned_cols=198  Identities=14%  Similarity=0.120  Sum_probs=128.1

Q ss_pred             CCCCCcEEEecCCcCc-----CCCchhhcCCCCccEEEecCCcCC-CCCccc--cCCCCCcEEEccCCCCCCC-C----c
Q 006185           37 ECPKLQALFLQKNHLL-----VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSL--SFLSNLRTLRLDYCNHLPD-L----S  103 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~~-~----~  103 (657)
                      ....++.+.+.++.+.     .+..  +..+++|++|++++|.+. ..|..+  .++++|++|++++|..... +    .
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            3345677888777654     1111  224566888888888875 466666  7888888888888884332 1    3


Q ss_pred             ccCCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCCC--Cchh-HhhcCccCcEEEcccCcccccccccccc
Q 006185          104 LIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLEL--IPPG-VLSRLRKLEELYMSHSFCHWQFESEEDT  179 (657)
Q Consensus       104 ~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~~g~~~~  179 (657)
                      .+..+++|++|++++|.++.+| ..++.+++|++|++++|...+.  ++.. .++.+++|++|++++|.+.. ..     
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~-----  213 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PT-----  213 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HH-----
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hH-----
Confidence            3457888888888888887665 4678888888888888643321  2211 13578888888888886531 00     


Q ss_pred             ccccchh-hhcCCCCccEEEeecCCCccC-CCC-CC---CCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecc
Q 006185          180 RSNAKFI-ELGALSRLTSLHIDIPKGEIM-PSD-MS---LPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD  253 (657)
Q Consensus       180 ~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~-~~---l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  253 (657)
                         ..+. -++.+++|++|++++|.+... |.. ..   +++|+.|+++++.-...       +..+. +.++.+++++|
T Consensus       214 ---~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-------p~~~~-~~L~~L~Ls~N  282 (310)
T 4glp_A          214 ---GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-------PKGLP-AKLRVLDLSSN  282 (310)
T ss_dssp             ---HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-------CSCCC-SCCSCEECCSC
T ss_pred             ---HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-------hhhhc-CCCCEEECCCC
Confidence               1112 246778888888888887655 333 22   36888888877643332       22222 67788888776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=1.6e-15  Score=154.57  Aligned_cols=162  Identities=24%  Similarity=0.331  Sum_probs=90.2

Q ss_pred             CCCCCCCCCCCCCCccEEEccCCCccccCCCC---CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185            5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGL---ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-   80 (657)
Q Consensus         5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-   80 (657)
                      ++++.+|. ...+.+++|++++|.++.++...   .+++|++|++++|.+..+++..|.++++|++|+|++|+++.++. 
T Consensus        28 ~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~  106 (361)
T 2xot_A           28 QQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF  106 (361)
T ss_dssp             SCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence            34555553 12344566666666666555432   45666666666666665555555666666666666666655443 


Q ss_pred             cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCcccccc----cCCCCCCEEEccCCCCCCCCchhHhhc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVSF----GRLSHLRLLDLTDCYNLELIPPGVLSR  155 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~l~~c~~~~~~~~~~~~~  155 (657)
                      .|.++.+|++|++++|..... +..+.++++|++|++++|.++.+|..+    ..+++|++|++++ +.++.+|...+..
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~  185 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQK  185 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHH
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhh
Confidence            455666666666666653322 355666666666666666666665543    4566666666666 3455555544555


Q ss_pred             Ccc--CcEEEcccCc
Q 006185          156 LRK--LEELYMSHSF  168 (657)
Q Consensus       156 l~~--L~~L~l~~~~  168 (657)
                      ++.  ++.|++++|.
T Consensus       186 l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          186 LPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SCHHHHTTEECCSSC
T ss_pred             ccHhhcceEEecCCC
Confidence            554  2556666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.62  E-value=5.3e-15  Score=157.92  Aligned_cols=174  Identities=20%  Similarity=0.277  Sum_probs=141.9

Q ss_pred             CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185           17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~   96 (657)
                      .++++|++++|.++.+|..+ +++|++|++++|.+..+|    ..+++|++|++++|+++.+|. +.+  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            38999999999999988765 478999999999999888    347899999999999988888 766  9999999999


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE  176 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~  176 (657)
                      .....|.   .+++|++|++++|.++.+|.   .+++|++|++++| .++.+|.  +.  ++|++|++++|.+.      
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~------  193 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE------  193 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS------
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC------
Confidence            8555555   78999999999999999887   6789999999994 5667887  44  89999999998764      


Q ss_pred             cccccccchhhhcCCCCc-------cEEEeecCCCccCCCC-CCCCCccEEEEEEc
Q 006185          177 EDTRSNAKFIELGALSRL-------TSLHIDIPKGEIMPSD-MSLPNLTSFSITIG  224 (657)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~  224 (657)
                            ..+. +..  +|       +.|++++|.+..+|.. ..+++|+.|++.+|
T Consensus       194 ------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          194 ------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             ------SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred             ------chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence                  2222 333  55       9999999998888875 55788888888766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.7e-16  Score=160.61  Aligned_cols=219  Identities=14%  Similarity=0.102  Sum_probs=120.3

Q ss_pred             CccEEEccCCCccccCCCC-CC--CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC--CCccccCCCCCcEEE
Q 006185           18 DLTGISLMFNDIHEVPDGL-EC--PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS--PPSSLSFLSNLRTLR   92 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--lp~~~~~l~~L~~L~   92 (657)
                      .+++++++++.+..  ... .+  +++++|+++++.+...+..+ .++++|++|++++|.++.  ++..+.++++|++|+
T Consensus        48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            35666666665541  111 22  56666777666666444443 456667777777666642  555666666777777


Q ss_pred             ccCCCCC-CCCcccCCCCCCCEEEeeCC-CCC--cccccccCCCCCCEEEccCCCCCCC--CchhHhhcCc-cCcEEEcc
Q 006185           93 LDYCNHL-PDLSLIGELSGLEILDLSKS-DVN--EIPVSFGRLSHLRLLDLTDCYNLEL--IPPGVLSRLR-KLEELYMS  165 (657)
Q Consensus        93 l~~~~~~-~~~~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~l~~c~~~~~--~~~~~~~~l~-~L~~L~l~  165 (657)
                      +++|... ..+..++++++|++|++++| .++  .+|..+.++++|++|++++|..++.  ++.. +..++ +|++|+++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeC
Confidence            7766522 12455666667777777766 455  3555566666777777766534443  2332 56666 67777766


Q ss_pred             cCccccccccccccccccchhhhcCCCCccEEEeecCC-Cc--cCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcc-c
Q 006185          166 HSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK-GE--IMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENF-N  241 (657)
Q Consensus       166 ~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~  241 (657)
                      +|....  .      ....+..+..+++|+.|++++|. +.  .++....+++|+.|++.++.+.....     ...+ .
T Consensus       204 ~~~~~~--~------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~l~~  270 (336)
T 2ast_B          204 GYRKNL--Q------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-----LLELGE  270 (336)
T ss_dssp             SCGGGS--C------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-----GGGGGG
T ss_pred             CCcccC--C------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-----HHHHhc
Confidence            663110  0      01334445566667777776665 22  12222455667777666553111111     1112 2


Q ss_pred             ccCcceEEeecc
Q 006185          242 KRCSRAMGLSQD  253 (657)
Q Consensus       242 ~~~l~~l~l~~~  253 (657)
                      .+.++.++++++
T Consensus       271 ~~~L~~L~l~~~  282 (336)
T 2ast_B          271 IPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeccCc
Confidence            366777777766

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.61  E-value=1.4e-14  Score=137.31  Aligned_cols=141  Identities=26%  Similarity=0.283  Sum_probs=124.5

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      ++++..+|. ...++|++|++++|.++.++.. + .+++|++|++++|.+..++...|.++++|++|++++|+++.++..
T Consensus        28 ~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           28 SKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             TSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence            556788884 2349999999999999987543 4 899999999999999999988899999999999999999988754


Q ss_pred             -ccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCC
Q 006185           82 -LSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNL  145 (657)
Q Consensus        82 -~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~  145 (657)
                       +..+++|++|++++|.....|..+.++++|++|++++|.++.+|.. +..+++|++|+++++...
T Consensus       107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence             6899999999999999777889999999999999999999988854 889999999999996543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=5e-15  Score=150.30  Aligned_cols=204  Identities=17%  Similarity=0.152  Sum_probs=146.2

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCc-CCCchhhcCCCCccE-EEecCCcCCCC-
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKV-LDLGGIRMVSP-   78 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~-L~L~~~~~~~l-   78 (657)
                      +++++++|.- -.+++++|++++|.|+.+|...  ++++|++|++++|.+. .++..+|.++++++. +.+.+|+++.+ 
T Consensus        18 ~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           18 ESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             STTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            4578888841 2478999999999999999764  8999999999999986 578888899998875 56667888877 


Q ss_pred             CccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCC-CCCccccc-ccCC-CCCCEEEccCCCCCCCCchhHhh
Q 006185           79 PSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKS-DVNEIPVS-FGRL-SHLRLLDLTDCYNLELIPPGVLS  154 (657)
Q Consensus        79 p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l-~~L~~L~l~~c~~~~~~~~~~~~  154 (657)
                      |..|..+++|++|++++|.....+ ..+....++.+|++.++ .++.+|.. +..+ ..+++|++++ +.++.++.. ..
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f  174 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AF  174 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SS
T ss_pred             chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hc
Confidence            567899999999999999844444 34455566777777653 56666553 4444 3577788877 556677766 45


Q ss_pred             cCccCcEEEcccC-ccccccccccccccccch-hhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEE
Q 006185          155 RLRKLEELYMSHS-FCHWQFESEEDTRSNAKF-IELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITI  223 (657)
Q Consensus       155 ~l~~L~~L~l~~~-~~~~~~~g~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  223 (657)
                      ...+|++|++.++ .+.            .++ ..++.+++|+.|++++|.+..+|.. .+.+|++|.+..
T Consensus       175 ~~~~L~~l~l~~~n~l~------------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~l~  232 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLE------------ELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARS  232 (350)
T ss_dssp             TTEEEEEEECTTCTTCC------------CCCTTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCEEECTT
T ss_pred             cccchhHHhhccCCccc------------CCCHHHhccCcccchhhcCCCCcCccChh-hhccchHhhhcc
Confidence            5667777777643 222            222 3456777788888888877777654 356666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=1.4e-14  Score=154.76  Aligned_cols=168  Identities=17%  Similarity=0.167  Sum_probs=142.2

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS   83 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~   83 (657)
                      ++++.++|.- .+++|++|++++|.++.+|  ..+++|++|++++|.+..+|.  |.+  +|++|++++|.++.+|.   
T Consensus        68 ~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---  137 (571)
T 3cvr_A           68 RLNLSSLPDN-LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---  137 (571)
T ss_dssp             SSCCSCCCSC-CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---
T ss_pred             CCCCCccCHh-HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---
Confidence            5577788852 2489999999999999999  457899999999999999888  454  99999999999999988   


Q ss_pred             CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC----
Q 006185           84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL----  159 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L----  159 (657)
                      .+++|++|++++|.....|.   .+++|++|++++|.++.+|. +.  ++|++|++++ +.++.+|.  +..  +|    
T Consensus       138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~  206 (571)
T 3cvr_A          138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSE  206 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC---------
T ss_pred             cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhccc
Confidence            78999999999999555555   67899999999999999998 76  8999999999 46778886  443  66    


Q ss_pred             ---cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          160 ---EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       160 ---~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                         +.|++++|.+.            .++..+..+++|+.|++++|.+
T Consensus       207 ~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          207 ETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSC
T ss_pred             ccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcC
Confidence               99999999775            5667788899999999999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.60  E-value=1.6e-16  Score=164.06  Aligned_cols=184  Identities=16%  Similarity=0.092  Sum_probs=89.4

Q ss_pred             CCCCCCccEEEccCCCccc-----cCCCC-CCCCCcEEEecCCcCc----CCCchh------hcCCCCccEEEecCCcCC
Q 006185           13 INTFEDLTGISLMFNDIHE-----VPDGL-ECPKLQALFLQKNHLL----VIPDPF------FQGMKDLKVLDLGGIRMV   76 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~----~~~~~~------~~~l~~Lr~L~L~~~~~~   76 (657)
                      +..+++|++|++++|.++.     ++..+ .+++|++|++++|.+.    .+|..+      |..+++|++|++++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3445556666666665542     22222 4556666666655333    222222      245566666666666554


Q ss_pred             C-----CCccccCCCCCcEEEccCCCCCCC-C----cccCCC---------CCCCEEEeeCCCCC--ccc---ccccCCC
Q 006185           77 S-----PPSSLSFLSNLRTLRLDYCNHLPD-L----SLIGEL---------SGLEILDLSKSDVN--EIP---VSFGRLS  132 (657)
Q Consensus        77 ~-----lp~~~~~l~~L~~L~l~~~~~~~~-~----~~~~~l---------~~L~~L~l~~~~i~--~lp---~~i~~l~  132 (657)
                      .     +|..+.++++|++|++++|..... +    ..+..+         ++|++|++++|.++  .+|   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            3     445555566666666666652111 1    122222         56666666666554  233   3445555


Q ss_pred             CCCEEEccCCCCCCC-----CchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          133 HLRLLDLTDCYNLEL-----IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       133 ~L~~L~l~~c~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      +|++|++++|. ++.     +....+.++++|++|++++|.+....       ....+..+..+++|+.|++++|.+
T Consensus       188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------SSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------HHHHHHHHccCCCcCEEECCCCCC
Confidence            66666666642 221     11111455566666666655432100       013344455555566666655554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=1.6e-14  Score=135.77  Aligned_cols=140  Identities=26%  Similarity=0.338  Sum_probs=122.5

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS   80 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~   80 (657)
                      ++++++++|.- ..+++++|++++|.++.++...  .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.
T Consensus        19 ~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~   97 (220)
T 2v9t_B           19 RGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK   97 (220)
T ss_dssp             TTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence            35678888852 2389999999999999888743  89999999999999998877778999999999999999999886


Q ss_pred             c-ccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCC
Q 006185           81 S-LSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCY  143 (657)
Q Consensus        81 ~-~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~  143 (657)
                      . |..+++|++|++++|..... +..+.++++|++|++++|.++.+|.. +..+++|++|+++++.
T Consensus        98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            5 68999999999999995554 57899999999999999999988765 8899999999999954

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=5.5e-16  Score=156.85  Aligned_cols=195  Identities=22%  Similarity=0.215  Sum_probs=158.2

Q ss_pred             CCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcC--CCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCcEEE
Q 006185           17 EDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLV--IPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLRTLR   92 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L~   92 (657)
                      +++++|++++|.++..+... .+++|++|++++|.+..  ++. ++..+++|++|++++|.++ ..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            78999999999988665545 89999999999998763  444 5799999999999999987 5778889999999999


Q ss_pred             ccCCCCCC---CCcccCCCCCCCEEEeeCC-CCCc--ccccccCCC-CCCEEEccCCC-CCC--CCchhHhhcCccCcEE
Q 006185           93 LDYCNHLP---DLSLIGELSGLEILDLSKS-DVNE--IPVSFGRLS-HLRLLDLTDCY-NLE--LIPPGVLSRLRKLEEL  162 (657)
Q Consensus        93 l~~~~~~~---~~~~~~~l~~L~~L~l~~~-~i~~--lp~~i~~l~-~L~~L~l~~c~-~~~--~~~~~~~~~l~~L~~L  162 (657)
                      +++|..++   .+..++++++|++|++++| .++.  ++..+..++ +|++|++++|. .++  .++.. +.++++|++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEE
Confidence            99995455   3466889999999999999 8884  778899999 99999999974 343  34543 7889999999


Q ss_pred             EcccCc-cccccccccccccccchhhhcCCCCccEEEeecCC-C--ccCCCCCCCCCccEEEEEEc
Q 006185          163 YMSHSF-CHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK-G--EIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       163 ~l~~~~-~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~--~~~~~~~~l~~L~~L~l~~~  224 (657)
                      ++++|. +..           ..+..+..+++|+.|++++|. .  ..+.....+++|+.|++.++
T Consensus       228 ~l~~~~~l~~-----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          228 DLSDSVMLKN-----------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eCCCCCcCCH-----------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999986 322           456678889999999999985 2  11112356899999999865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=2.1e-14  Score=135.00  Aligned_cols=144  Identities=19%  Similarity=0.222  Sum_probs=123.5

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCC-C-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-G-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP   79 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp   79 (657)
                      ++++++++|. ...+.+++|++++|.++.++. . + .+++|++|++++|.+..+++..|.++++|++|++++|.++.++
T Consensus        19 s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~   97 (220)
T 2v70_A           19 SNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ   97 (220)
T ss_dssp             CSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC
Confidence            3567788884 235678999999999998843 3 3 8999999999999999888877899999999999999998876


Q ss_pred             c-cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCC
Q 006185           80 S-SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLEL  147 (657)
Q Consensus        80 ~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~  147 (657)
                      . .|..+++|++|++++|..... |..+.++++|++|++++|.++.+ |..+..+++|++|+++++.....
T Consensus        98 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           98 HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            5 589999999999999995554 58899999999999999999987 67899999999999999654433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.58  E-value=2.6e-15  Score=153.26  Aligned_cols=204  Identities=15%  Similarity=0.177  Sum_probs=147.9

Q ss_pred             CCCCCccEEEccCCCccccCC-----CC-CCC-CCcEEEecCCcCcCCCchhhcCC-----CCccEEEecCCcCCCCC-c
Q 006185           14 NTFEDLTGISLMFNDIHEVPD-----GL-ECP-KLQALFLQKNHLLVIPDPFFQGM-----KDLKVLDLGGIRMVSPP-S   80 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~lp-~   80 (657)
                      ...++|++|++++|.++..+.     .+ .++ +|++|++++|.+.......|..+     ++|++|++++|.++..+ .
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            344569999999999987764     23 677 89999999999886655445554     99999999999987543 3


Q ss_pred             c----ccCC-CCCcEEEccCCCCCCCC-c----ccCCC-CCCCEEEeeCCCCC-----cccccccCCC-CCCEEEccCCC
Q 006185           81 S----LSFL-SNLRTLRLDYCNHLPDL-S----LIGEL-SGLEILDLSKSDVN-----EIPVSFGRLS-HLRLLDLTDCY  143 (657)
Q Consensus        81 ~----~~~l-~~L~~L~l~~~~~~~~~-~----~~~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~-~L~~L~l~~c~  143 (657)
                      .    +..+ ++|++|++++|.....+ .    .+..+ .+|++|++++|.++     .++..+..+. +|++|++++|.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            2    4455 89999999999943333 2    24453 69999999999888     4556666776 99999999964


Q ss_pred             CCCCCchhHh----hcC-ccCcEEEcccCccccccccccccccccchhhhcC-CCCccEEEeecCCCccCCC------CC
Q 006185          144 NLELIPPGVL----SRL-RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGA-LSRLTSLHIDIPKGEIMPS------DM  211 (657)
Q Consensus       144 ~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~------~~  211 (657)
                       ++......+    ... ++|++|++++|.+....       ....+..+.. .++|+.|++++|.+...+.      ..
T Consensus       179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~  250 (362)
T 3goz_A          179 -LASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD  250 (362)
T ss_dssp             -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred             -CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence             544443223    344 69999999999765311       1134556666 4599999999998765443      15


Q ss_pred             CCCCccEEEEEEcC
Q 006185          212 SLPNLTSFSITIGE  225 (657)
Q Consensus       212 ~l~~L~~L~l~~~~  225 (657)
                      .+++|+.|+++++.
T Consensus       251 ~l~~L~~L~L~~n~  264 (362)
T 3goz_A          251 SLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTTTCSEEEEEHHH
T ss_pred             cCCCccEEEeccCC
Confidence            67889999998763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=1.9e-16  Score=163.41  Aligned_cols=86  Identities=21%  Similarity=0.236  Sum_probs=41.1

Q ss_pred             CCCCCcEEEecCCcCcCCCc----hhhcCCCCccEEEecCCcCCC----CCccc-------cCCCCCcEEEccCCCCCC-
Q 006185           37 ECPKLQALFLQKNHLLVIPD----PFFQGMKDLKVLDLGGIRMVS----PPSSL-------SFLSNLRTLRLDYCNHLP-  100 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~~Lr~L~L~~~~~~~----lp~~~-------~~l~~L~~L~l~~~~~~~-  100 (657)
                      .+++|++|++++|.+.....    ..|..+++|++|++++|.+..    +|..+       .++++|++|++++|.... 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            45556666666665542111    113455666666666554432    22222       445555555555555222 


Q ss_pred             ----CCcccCCCCCCCEEEeeCCCCC
Q 006185          101 ----DLSLIGELSGLEILDLSKSDVN  122 (657)
Q Consensus       101 ----~~~~~~~l~~L~~L~l~~~~i~  122 (657)
                          .+..+.++++|++|++++|.++
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCC
Confidence                1234445555555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.55  E-value=2.6e-15  Score=153.25  Aligned_cols=174  Identities=17%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             EEccCCCccc-cCCCC-CCCCCcEEEecCCcCcCCCc----hhhcCCC-CccEEEecCCcCCCC-CccccCC-----CCC
Q 006185           22 ISLMFNDIHE-VPDGL-ECPKLQALFLQKNHLLVIPD----PFFQGMK-DLKVLDLGGIRMVSP-PSSLSFL-----SNL   88 (657)
Q Consensus        22 L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~~~l-p~~~~~l-----~~L   88 (657)
                      ..++.|.++. +|... ..++|++|++++|.+...+.    ..|.+++ +|++|++++|.++.. +..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566777663 34333 33458888888888776665    5567777 788888888877543 4445443     778


Q ss_pred             cEEEccCCCCCCCC-c----ccCCC-CCCCEEEeeCCCCCccccc-----ccC-CCCCCEEEccCCCCCCC-----Cchh
Q 006185           89 RTLRLDYCNHLPDL-S----LIGEL-SGLEILDLSKSDVNEIPVS-----FGR-LSHLRLLDLTDCYNLEL-----IPPG  151 (657)
Q Consensus        89 ~~L~l~~~~~~~~~-~----~~~~l-~~L~~L~l~~~~i~~lp~~-----i~~-l~~L~~L~l~~c~~~~~-----~~~~  151 (657)
                      ++|++++|.....+ .    .+..+ ++|++|++++|.++..+..     +.. .++|++|++++|. ++.     ++..
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~  161 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI  161 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH
Confidence            88888887733222 2    24444 6777888877777644331     333 2577777777743 332     2222


Q ss_pred             HhhcCc-cCcEEEcccCccccccccccccccccchhhhcCC-CCccEEEeecCCC
Q 006185          152 VLSRLR-KLEELYMSHSFCHWQFESEEDTRSNAKFIELGAL-SRLTSLHIDIPKG  204 (657)
Q Consensus       152 ~~~~l~-~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~  204 (657)
                       +..++ +|++|++++|.+.....       ......+... ++|+.|++++|.+
T Consensus       162 -l~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          162 -LAAIPANVNSLNLRGNNLASKNC-------AELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             -HHTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             -HhcCCccccEeeecCCCCchhhH-------HHHHHHHHhCCCCCCEEECCCCCC
Confidence             34444 77777777775532111       0222334444 3677777666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.3e-14  Score=130.49  Aligned_cols=123  Identities=23%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCccEEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCccccCCCCCcEEE
Q 006185           17 EDLTGISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLR   92 (657)
Q Consensus        17 ~~L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~~~l~~L~~L~   92 (657)
                      +++++|++++|.++  .+|..+ .+++|++|++++|.+..+  ..|..+++|++|++++|.++. +|..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554  454443 455555555555554444  224455555555555555544 444444455555555


Q ss_pred             ccCCCCCCCC--cccCCCCCCCEEEeeCCCCCcccc----cccCCCCCCEEEccC
Q 006185           93 LDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV----SFGRLSHLRLLDLTD  141 (657)
Q Consensus        93 l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~  141 (657)
                      +++|.....+  ..++++++|++|++++|.++.+|.    .+..+++|++|++++
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            5555422222  344445555555555554444443    344444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=5.9e-17  Score=174.07  Aligned_cols=193  Identities=22%  Similarity=0.234  Sum_probs=138.9

Q ss_pred             CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCc-------------CcCCCchhhcCCCCccEEE-ecCCcCCC
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNH-------------LLVIPDPFFQGMKDLKVLD-LGGIRMVS   77 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~Lr~L~-L~~~~~~~   77 (657)
                      +..+++|+.|+++.|.++.+|..+ .+++|+.|++++|.             ....++..++.+++|+.|+ ++.+.+..
T Consensus       345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            356789999999999999999887 88899999987664             3334444567777787777 45443322


Q ss_pred             CCc------cccC--CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCc
Q 006185           78 PPS------SLSF--LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP  149 (657)
Q Consensus        78 lp~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~  149 (657)
                      ++.      .+..  ...|++|++++|.....|. ++++++|++|++++|.++.+|..++++++|++|++++ +.++.+|
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp  502 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc
Confidence            221      1111  1248888888887545554 8888888888888888888888888888888888888 4566677


Q ss_pred             hhHhhcCccCcEEEcccCccccccccccccccccc-hhhhcCCCCccEEEeecCCCccCCCC-----CCCCCccEEE
Q 006185          150 PGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK-FIELGALSRLTSLHIDIPKGEIMPSD-----MSLPNLTSFS  220 (657)
Q Consensus       150 ~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~L~~L~  220 (657)
                       . ++++++|++|++++|.+..           .. +..++.+++|+.|++++|.+..++..     ..+++|+.|+
T Consensus       503 -~-l~~l~~L~~L~Ls~N~l~~-----------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          503 -G-VANLPRLQELLLCNNRLQQ-----------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -G-GTTCSSCCEEECCSSCCCS-----------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -c-cCCCCCCcEEECCCCCCCC-----------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             4 7888888888888886542           22 67788888888888888887666554     2256777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.8e-14  Score=126.56  Aligned_cols=121  Identities=22%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             CCccEEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCccccCCCCCcEEE
Q 006185           17 EDLTGISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLR   92 (657)
Q Consensus        17 ~~L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~~~l~~L~~L~   92 (657)
                      +++++|++++|.++  .+|..+ .+++|++|++++|.+..+  ..|..+++|++|++++|.++. +|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45555555555554  455443 455555555555555444  224555555555555555544 444444455555555


Q ss_pred             ccCCCCCCCC--cccCCCCCCCEEEeeCCCCCcccc----cccCCCCCCEEEc
Q 006185           93 LDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV----SFGRLSHLRLLDL  139 (657)
Q Consensus        93 l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l  139 (657)
                      +++|.....+  ..++.+++|++|++++|.++.+|.    .+..+++|++|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            5555422211  344444444444444444444333    2444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=1e-13  Score=124.48  Aligned_cols=127  Identities=24%  Similarity=0.269  Sum_probs=71.7

Q ss_pred             CCCcEEEecCCcCc--CCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEE
Q 006185           39 PKLQALFLQKNHLL--VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILD  115 (657)
Q Consensus        39 ~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~  115 (657)
                      ++|++|++++|.+.  .+|.. |..+++|++|++++|.++.+ ..+..+++|++|++++|.... .|..++++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666666666665  55543 45666666666666666555 555666666666666666333 334444566666666


Q ss_pred             eeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCch---hHhhcCccCcEEEcccCc
Q 006185          116 LSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPP---GVLSRLRKLEELYMSHSF  168 (657)
Q Consensus       116 l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~---~~~~~l~~L~~L~l~~~~  168 (657)
                      +++|.++.+|  ..+..+++|++|++++| .+..+|.   ..+..+++|++|++++|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            6666666554  45556666666666653 3334443   234555555555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.2e-14  Score=129.85  Aligned_cols=128  Identities=15%  Similarity=0.120  Sum_probs=69.0

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCC-CccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcc-cCCCCCCCEE
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMK-DLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL-IGELSGLEIL  114 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L  114 (657)
                      .+.+|++|++++|.+..++.  +..+. +|++|++++|.++.+ ..++.+++|++|++++|.....|.. ++.+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            44555555555555554433  22222 555555555555544 4455555555555555553333322 3556666666


Q ss_pred             EeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchh---HhhcCccCcEEEcccCc
Q 006185          115 DLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPG---VLSRLRKLEELYMSHSF  168 (657)
Q Consensus       115 ~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~---~~~~l~~L~~L~l~~~~  168 (657)
                      ++++|.++.+|.  .+..+++|++|++++| .+..+|..   ++..+++|+.|+++++.
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            666666665555  5566666666666663 33444442   35666666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=8.1e-14  Score=122.39  Aligned_cols=125  Identities=20%  Similarity=0.264  Sum_probs=79.1

Q ss_pred             CCCCcEEEecCCcCc--CCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEE
Q 006185           38 CPKLQALFLQKNHLL--VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEIL  114 (657)
Q Consensus        38 ~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L  114 (657)
                      .++|++|++++|.+.  .+|. .|..+++|++|++++|.++.+ ..++++++|++|++++|.... .|..++++++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356777777777766  5554 346677777777777776665 566667777777777776444 34555556777777


Q ss_pred             EeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCch---hHhhcCccCcEEEcc
Q 006185          115 DLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPP---GVLSRLRKLEELYMS  165 (657)
Q Consensus       115 ~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~---~~~~~l~~L~~L~l~  165 (657)
                      ++++|.++.+|  ..++.+++|++|++++| .++.++.   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            77777666554  55666677777777664 3444443   335666666666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=4.2e-13  Score=123.18  Aligned_cols=137  Identities=21%  Similarity=0.252  Sum_probs=108.8

Q ss_pred             CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCch-hhcCCCCccEEEecCCcCCCC-CccccCCCCC
Q 006185           11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDP-FFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNL   88 (657)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L   88 (657)
                      |..+.+.. ++++++++.++.+|..+. .++++|++++|.+..++.. +|.++++|++|++++|+++.+ |..|.++++|
T Consensus         3 P~~C~C~~-~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A            3 PAMCHCEG-TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             CTTSEEET-TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCEECC-CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            33444443 789999999999987653 3899999999998877764 578999999999999999876 6788999999


Q ss_pred             cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCc
Q 006185           89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIP  149 (657)
Q Consensus        89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~  149 (657)
                      ++|++++|.....+ ..++++++|++|++++|.++.+ |..+..+++|++|+++++......+
T Consensus        81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999844433 5688899999999999998855 6678889999999998865443433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=4.9e-14  Score=127.59  Aligned_cols=131  Identities=16%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             CCCCCCCCCccEEEccCCCccccCCCCCCC-CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc-cCCCC
Q 006185           10 WPSINTFEDLTGISLMFNDIHEVPDGLECP-KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL-SFLSN   87 (657)
Q Consensus        10 ~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~-~~l~~   87 (657)
                      .+.+..+.++++|++++|.++.++....+. +|++|++++|.+..++  .|..+++|++|++++|.++.+|..+ ..+++
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            344555667777777777777665544333 7777777777766652  2567777777777777776666444 67777


Q ss_pred             CcEEEccCCCCCCCCc--ccCCCCCCCEEEeeCCCCCccccc----ccCCCCCCEEEccCC
Q 006185           88 LRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS----FGRLSHLRLLDLTDC  142 (657)
Q Consensus        88 L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~l~~c  142 (657)
                      |++|++++|.....|.  .++.+++|++|++++|.++.+|..    +..+++|++|+++++
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            7777777776433343  566777777777777777766664    667777777777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.45  E-value=1e-12  Score=119.06  Aligned_cols=127  Identities=24%  Similarity=0.287  Sum_probs=101.1

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEccCC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRLDYC   96 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~   96 (657)
                      ..+.++++++.++.+|... .++|++|++++|.+..++...|.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus         8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3578888888888888554 36889999999988888887788899999999999988877654 688888889988888


Q ss_pred             CCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCC
Q 006185           97 NHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNL  145 (657)
Q Consensus        97 ~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~  145 (657)
                      .....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            855554 4467888888888888888887776 477888888888885443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=8.5e-13  Score=121.06  Aligned_cols=121  Identities=25%  Similarity=0.374  Sum_probs=77.6

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~   98 (657)
                      ++++++++.++.+|..+ .++|++|++++|.+..+|. .|.++++|++|++++|.++.++ ..|.++++|++|++++|..
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            56777777777777544 2467777777777776664 3567777777777777776654 3566677777777776663


Q ss_pred             CCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCC
Q 006185           99 LPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDC  142 (657)
Q Consensus        99 ~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c  142 (657)
                      ...+ ..++++++|++|++++|.++.+|.. +..+++|++|+++++
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            3333 4566666666666666666666553 556666666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.43  E-value=1.3e-12  Score=119.74  Aligned_cols=125  Identities=24%  Similarity=0.311  Sum_probs=111.2

Q ss_pred             cEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCC
Q 006185           42 QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSD  120 (657)
Q Consensus        42 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~  120 (657)
                      ++++++++.+..+|..+   .++|++|++++|+++.+|..|.++++|++|++++|.....+ ..|.++++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            68999999999999865   36899999999999999999999999999999999955554 679999999999999999


Q ss_pred             CCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185          121 VNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus       121 i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (657)
                      ++.+|. .+..+++|++|++++ +.++.+|..++..+++|++|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            998875 599999999999999 5677888877889999999999998653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=1.7e-13  Score=151.97  Aligned_cols=151  Identities=21%  Similarity=0.231  Sum_probs=93.8

Q ss_pred             CCccEEEccCCCccccCCCC-CCCCCcEEEec-----CCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185           17 EDLTGISLMFNDIHEVPDGL-ECPKLQALFLQ-----KNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT   90 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~   90 (657)
                      +.++.|++..|.+...+... ...+|+.+.+.     .+.+. +++..|..++.|++|+|++|.+..+|..+.++++|++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            56788888888887766544 44444444433     33333 5555678889999999999988888888888999999


Q ss_pred             EEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185           91 LRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus        91 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~  170 (657)
                      |+|++|.....|..++++++|++|+|++|.++.+|..++++++|++|++++| .++.+|.. ++++++|++|++++|.+.
T Consensus       252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred             EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence            9999988666788888999999999999998888888999999999999884 56788887 888999999999888664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=1e-12  Score=120.57  Aligned_cols=124  Identities=21%  Similarity=0.207  Sum_probs=97.5

Q ss_pred             cEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc--ccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeC
Q 006185           42 QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS--LSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSK  118 (657)
Q Consensus        42 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~  118 (657)
                      ++++++++.+..+|..++   .+|++|++++|.++.++..  ++++++|++|++++|..... |..++++++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            788899988888888653   3889999999988877653  88899999999998884444 57788889999999999


Q ss_pred             CCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185          119 SDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus       119 ~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      |.++.++.. +..+++|++|+++++ .++.++...+..+++|++|++++|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            888876654 788888888888884 45555444477888888888888754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=1.2e-13  Score=153.33  Aligned_cols=135  Identities=21%  Similarity=0.196  Sum_probs=111.9

Q ss_pred             CCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCC
Q 006185           33 PDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGL  111 (657)
Q Consensus        33 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L  111 (657)
                      +..+ .+++|++|++++|.+..+|..+| ++++|++|+|++|.++.+|..|+++++|++|+|++|.....|..++++++|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            3334 78999999999999999998875 899999999999999999999999999999999999977788999999999


Q ss_pred             CEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCcc-CcEEEcccCcc
Q 006185          112 EILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK-LEELYMSHSFC  169 (657)
Q Consensus       112 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~-L~~L~l~~~~~  169 (657)
                      ++|++++|.++.+|..|+++++|++|++++|...+.+|.. +..+.. +..+++++|.+
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCC
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcc
Confidence            9999999999999999999999999999996544444443 544321 22355666643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=1.8e-12  Score=130.26  Aligned_cols=190  Identities=20%  Similarity=0.186  Sum_probs=143.4

Q ss_pred             CCCccEEEccCCCcc--------------------ccCCCC--C--------CCCCcEEEecCCcCcCCCchhhcCCCCc
Q 006185           16 FEDLTGISLMFNDIH--------------------EVPDGL--E--------CPKLQALFLQKNHLLVIPDPFFQGMKDL   65 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L   65 (657)
                      +++|++|+|++|.+.                    .+|+..  +        |++|+.+.+.+ .+..+++..|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678999999999887                    455554  6        89999999988 7778888889999999


Q ss_pred             cEEEecCCcCCCCC-ccccCCCCCcEEEccCCC-----------------CCC--------------------CCc----
Q 006185           66 KVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCN-----------------HLP--------------------DLS----  103 (657)
Q Consensus        66 r~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~-----------------~~~--------------------~~~----  103 (657)
                      +.++++++.+..++ ..|..+.++.++......                 .++                    .+.    
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999998876654 466777777777655411                 000                    000    


Q ss_pred             -------------cc-CCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCc-EEEcccC
Q 006185          104 -------------LI-GELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLE-ELYMSHS  167 (657)
Q Consensus       104 -------------~~-~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~-~L~l~~~  167 (657)
                                   .+ ..+.+|+.+++.++.++.+|+. |.++.+|+.+++.++  ++.++..++.++.+|+ .+++.+.
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc
Confidence                         00 0278899999999889988875 888999999999884  7788888889999999 9998763


Q ss_pred             ccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEE
Q 006185          168 FCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFS  220 (657)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~  220 (657)
                       +..           -....+.++++|+.+++..+.+..++..  .++++|+.++
T Consensus       285 -l~~-----------I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          285 -VTA-----------IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -CCE-----------ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             -ceE-----------EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence             221           3346788899999999988888888775  6778888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=1.3e-11  Score=111.69  Aligned_cols=120  Identities=23%  Similarity=0.326  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS   81 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~   81 (657)
                      ++++..+| ....+++++|++++|.++.++...  .+++|++|++++|.+..++...|.++++|++|++++|.++.+|..
T Consensus        16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   94 (177)
T 2o6r_A           16 SKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG   94 (177)
T ss_dssp             SSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH
Confidence            55677887 334589999999999999888754  789999999999999999988889999999999999999987764


Q ss_pred             -ccCCCCCcEEEccCCCCCCCCc-ccCCCCCCCEEEeeCCCCCcc
Q 006185           82 -LSFLSNLRTLRLDYCNHLPDLS-LIGELSGLEILDLSKSDVNEI  124 (657)
Q Consensus        82 -~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l  124 (657)
                       +..+++|++|++++|.....|. .+.++++|++|++++|.+...
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence             7899999999999999666664 468899999999999987743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=5.2e-12  Score=135.65  Aligned_cols=122  Identities=19%  Similarity=0.163  Sum_probs=106.9

Q ss_pred             CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeC
Q 006185           39 PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSK  118 (657)
Q Consensus        39 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  118 (657)
                      ..|++|++++|.+..+|.  |+.+++|++|++++|.++.+|..++++++|++|++++|.....| .++++++|++|++++
T Consensus       441 ~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            369999999999999987  79999999999999999999999999999999999999955555 899999999999999


Q ss_pred             CCCCcc--cccccCCCCCCEEEccCCCCCCCCchh---HhhcCccCcEEEc
Q 006185          119 SDVNEI--PVSFGRLSHLRLLDLTDCYNLELIPPG---VLSRLRKLEELYM  164 (657)
Q Consensus       119 ~~i~~l--p~~i~~l~~L~~L~l~~c~~~~~~~~~---~~~~l~~L~~L~l  164 (657)
                      |.++.+  |..++.+++|++|++++| .+...|..   .+..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            999988  899999999999999995 45555432   2455899999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=3e-11  Score=108.56  Aligned_cols=103  Identities=18%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEccCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~~   98 (657)
                      +.+++++|.++.+|..+. ++|++|++++|.+..+++..|.++++|++|+|++|+++.+|.. |.++++|++|++++|..
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            556666666666665443 5666666666666665555556666666666666666655543 35555555555555553


Q ss_pred             CCCCc-ccCCCCCCCEEEeeCCCCCc
Q 006185           99 LPDLS-LIGELSGLEILDLSKSDVNE  123 (657)
Q Consensus        99 ~~~~~-~~~~l~~L~~L~l~~~~i~~  123 (657)
                      ...|. .++++++|++|++++|.+..
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ceeCHHHhccccCCCEEEeCCCCccc
Confidence            33332 24455555555555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=6.5e-14  Score=129.51  Aligned_cols=103  Identities=23%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL  116 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  116 (657)
                      .+++|++|++++|.+..+|  .|.++++|++|++++|.++.+|..+..+++|++|++++|. ++.+..++++++|++|++
T Consensus        46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSEEEE
T ss_pred             cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCEEEC
Confidence            4455555555555555544  2455555555555555555555544445555555555554 222224444555555555


Q ss_pred             eCCCCCcccc--cccCCCCCCEEEccCC
Q 006185          117 SKSDVNEIPV--SFGRLSHLRLLDLTDC  142 (657)
Q Consensus       117 ~~~~i~~lp~--~i~~l~~L~~L~l~~c  142 (657)
                      ++|.++.+|.  .+.++++|++|++++|
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            5555554433  3445555555555553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=1.3e-13  Score=127.56  Aligned_cols=154  Identities=21%  Similarity=0.200  Sum_probs=111.7

Q ss_pred             CCcEEEecCC--cCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEee
Q 006185           40 KLQALFLQKN--HLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLS  117 (657)
Q Consensus        40 ~L~~L~l~~~--~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  117 (657)
                      .++...+.+.  .+..+|.. |..+++|++|++++|.++.+| .+.++++|++|++++|.....|..++.+++|++|+++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred             chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence            4555666554  34455554 689999999999999998888 8889999999999999866667777778899999999


Q ss_pred             CCCCCcccccccCCCCCCEEEccCCCCCCCCch-hHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccE
Q 006185          118 KSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPP-GVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTS  196 (657)
Q Consensus       118 ~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~  196 (657)
                      +|.++.+| .+.++++|++|++++ +.+..++. ..+..+++|++|++++|.+....... ..........+..+++|+.
T Consensus       102 ~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          102 YNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSE
T ss_pred             CCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEE
Confidence            99999887 688899999999998 45666554 34788999999999988653210000 0000011223677788887


Q ss_pred             EE
Q 006185          197 LH  198 (657)
Q Consensus       197 L~  198 (657)
                      |+
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            76

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.22  E-value=7.1e-11  Score=105.78  Aligned_cols=103  Identities=20%  Similarity=0.263  Sum_probs=55.9

Q ss_pred             ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEccCCC
Q 006185           19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRLDYCN   97 (657)
Q Consensus        19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~   97 (657)
                      .+++++++|.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|+++.+|.. |.++++|++|++++|.
T Consensus        11 ~~~l~~s~n~l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            3556666666666665442 5566666666666655555556666666666666666555443 3455555555555555


Q ss_pred             CCCCC-cccCCCCCCCEEEeeCCCCC
Q 006185           98 HLPDL-SLIGELSGLEILDLSKSDVN  122 (657)
Q Consensus        98 ~~~~~-~~~~~l~~L~~L~l~~~~i~  122 (657)
                      ....+ ..+.++++|++|++++|.++
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            33333 23444555555555554433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=1.6e-10  Score=103.82  Aligned_cols=105  Identities=21%  Similarity=0.242  Sum_probs=82.7

Q ss_pred             CcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCCCCc-ccCCCCCCCEEEeeC
Q 006185           41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLPDLS-LIGELSGLEILDLSK  118 (657)
Q Consensus        41 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~  118 (657)
                      -++++++++.+..+|..+   .++|++|++++|+++.+ |..|.++++|++|++++|.....|. .++++++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            377888888888888765   37888999999988876 5678888889999998888555554 467888888888888


Q ss_pred             CCCCccccc-ccCCCCCCEEEccCCCCCCCCc
Q 006185          119 SDVNEIPVS-FGRLSHLRLLDLTDCYNLELIP  149 (657)
Q Consensus       119 ~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~  149 (657)
                      |.++.+|.. +.++++|++|+++++ .+...+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC  121 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred             CccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence            888888776 888888888888884 444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.13  E-value=2.9e-10  Score=101.78  Aligned_cols=99  Identities=21%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             CcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeC
Q 006185           41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSK  118 (657)
Q Consensus        41 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~  118 (657)
                      .++++++++.+..+|..+   .++|++|++++|+++.+ |..|.++++|++|++++|.....+ ..+.++++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            467777777777777654   36777777777777766 456777777777777777744444 3456777777777777


Q ss_pred             CCCCccccc-ccCCCCCCEEEccCC
Q 006185          119 SDVNEIPVS-FGRLSHLRLLDLTDC  142 (657)
Q Consensus       119 ~~i~~lp~~-i~~l~~L~~L~l~~c  142 (657)
                      |.++.+|.. +.++++|++|+++++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCC
Confidence            777766654 667777777777773

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=2.4e-10  Score=114.62  Aligned_cols=169  Identities=14%  Similarity=0.099  Sum_probs=134.9

Q ss_pred             CCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC----CCCC-ccc------
Q 006185           16 FEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM----VSPP-SSL------   82 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~----~~lp-~~~------   82 (657)
                      +++|+.|++.. .++.|++..  +|++|++++++++.+..+++..|.++.++.++.......    ..+. ..|      
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            89999999998 899998876  899999999999999889999999988888887665211    0000 000      


Q ss_pred             --------------------------------------------cCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEee
Q 006185           83 --------------------------------------------SFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLS  117 (657)
Q Consensus        83 --------------------------------------------~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~  117 (657)
                                                                  ..+.+|+++++++|.....+ ..|.++.+|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                                        13789999999998855554 679999999999999


Q ss_pred             CCCCCccccc-ccCCCCCC-EEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCcc
Q 006185          118 KSDVNEIPVS-FGRLSHLR-LLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLT  195 (657)
Q Consensus       118 ~~~i~~lp~~-i~~l~~L~-~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~  195 (657)
                      ++ ++.+++. |.++.+|+ .+++.+  .++.++..++.++++|+.+++.++.+..           -....+.++++|+
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~-----------I~~~aF~~~~~L~  324 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITT-----------LGDELFGNGVPSK  324 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCE-----------ECTTTTCTTCCCC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCc-----------cchhhhcCCcchh
Confidence            97 8877765 89999999 999988  5778888889999999999998776542           3345688899999


Q ss_pred             EEEe
Q 006185          196 SLHI  199 (657)
Q Consensus       196 ~L~l  199 (657)
                      .++.
T Consensus       325 ~ly~  328 (329)
T 3sb4_A          325 LIYK  328 (329)
T ss_dssp             EEEC
T ss_pred             hhcc
Confidence            8763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.98  E-value=9.8e-09  Score=105.16  Aligned_cols=141  Identities=17%  Similarity=0.221  Sum_probs=68.3

Q ss_pred             CccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEcc
Q 006185           18 DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLD   94 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~   94 (657)
                      +|+.+.+.. .++.+....  +|++|+.+++.++.+..++...|. ..+|+.+.+..+ ++.++ ..|.+|.+|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            456666553 455555443  566666666666655566655554 356666666532 44433 345556666666665


Q ss_pred             CCCCCC-CCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCC-----CCchhHhhcCccCcEEEcc
Q 006185           95 YCNHLP-DLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLE-----LIPPGVLSRLRKLEELYMS  165 (657)
Q Consensus        95 ~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~-----~~~~~~~~~l~~L~~L~l~  165 (657)
                      .+- .. ....|.+ .+|+.+.+. +.++.++. .|.++++|+.+++.++ ...     .++..++..+++|+.+.+.
T Consensus       235 ~~l-~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          235 ENV-STIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             TTC-CEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             CCc-cCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC
Confidence            432 11 1133333 445555552 23343322 2445555555555442 111     2444444455555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.98  E-value=4.3e-09  Score=107.83  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=63.1

Q ss_pred             CccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185           18 DLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~   96 (657)
                      +|+.+.+..+ ++.+.... .-.+|+.+.+.+ .+..+....|.++++|+.+++..+.++.++...-.+.+|+.+.+..+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~  213 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT  213 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence            3455554333 44444333 112455555543 33344444455555555555555555444433223445555555432


Q ss_pred             CCCC-CCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185           97 NHLP-DLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus        97 ~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~  167 (657)
                      - .. ....|.++.+|+.+++..+ ++.++.. +.+ .+|+.+.+.+  .+..++..++.++++|+.+++.++
T Consensus       214 l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          214 L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS
T ss_pred             h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc
Confidence            1 11 1244445555555555442 3333332 223 4455555532  234444444455555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.88  E-value=2e-08  Score=103.28  Aligned_cols=132  Identities=16%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             ccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCCCccc
Q 006185           29 IHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPDLSLI  105 (657)
Q Consensus        29 ~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~  105 (657)
                      +++|.+.+  +|.+|+.+.+..+ +..+.+..|.++.+|+.+++..+ ++.++ ..|.++.+|+.+.+..+-..-....+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            45666555  6777887777643 55677777777788887777644 44443 35666777766655433211112333


Q ss_pred             CCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185          106 GELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH  166 (657)
Q Consensus       106 ~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~  166 (657)
                      .++..++.....  .+..+. ..+.++++|+.+.+.+  .+..++..++..+.+|+.+.+..
T Consensus       137 ~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          137 KGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred             ecccccccccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence            333322222111  112221 2355566666666544  13344444455566666655543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.85  E-value=3.3e-10  Score=114.95  Aligned_cols=159  Identities=17%  Similarity=0.113  Sum_probs=101.3

Q ss_pred             CCCCcEEEecCCcCcCCCchhhc-----CCCCccEEEecCCcCCC--CCccccCCCCCcEEEccCCCCCCCC--ccc---
Q 006185           38 CPKLQALFLQKNHLLVIPDPFFQ-----GMKDLKVLDLGGIRMVS--PPSSLSFLSNLRTLRLDYCNHLPDL--SLI---  105 (657)
Q Consensus        38 ~~~L~~L~l~~~~~~~~~~~~~~-----~l~~Lr~L~L~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~--~~~---  105 (657)
                      .++|++|++++|.+.......|.     ..++|++|+|++|.++.  ...-...+.+|++|++++|. +++.  ..+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence            35788888888887632222222     23688888888887752  22222345678888888887 4321  222   


Q ss_pred             --CCCCCCCEEEeeCCCCCc-----ccccccCCCCCCEEEccCCCCCCCCc----hhHhhcCccCcEEEcccCccccccc
Q 006185          106 --GELSGLEILDLSKSDVNE-----IPVSFGRLSHLRLLDLTDCYNLELIP----PGVLSRLRKLEELYMSHSFCHWQFE  174 (657)
Q Consensus       106 --~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~  174 (657)
                        ...++|++|++++|.++.     ++..+..+++|++|++++|. ++...    ...+...++|++|++++|.+.... 
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-  227 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-  227 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-
Confidence              346778888888888763     45556778888888888854 44322    122566778888888888654211 


Q ss_pred             cccccccccchhhhcCCCCccEEEeecCCCc
Q 006185          175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGE  205 (657)
Q Consensus       175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (657)
                            .......+...++|++|++++|.++
T Consensus       228 ------~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          228 ------ALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             ------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             ------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence                  1144455666778888888888763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=1.2e-08  Score=103.19  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=60.3

Q ss_pred             EEEccCC-CccccCCCC-CCCCCcEEEecC-CcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCC
Q 006185           21 GISLMFN-DIHEVPDGL-ECPKLQALFLQK-NHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        21 ~L~l~~~-~~~~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~   96 (657)
                      .++++++ .++.+|. + .+++|++|++++ |.+..+++..|.++++|++|+|++|+++.++ ..|.++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4566666 6777776 5 666777777765 6666666666677777777777777666543 34566666666666666


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCC
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVN  122 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~  122 (657)
                      .....|..+.....|++|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCcc
Confidence            64444432222222555555555444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.84  E-value=1.9e-07  Score=96.05  Aligned_cols=133  Identities=13%  Similarity=0.103  Sum_probs=85.9

Q ss_pred             CcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEEeeCCCCCcccc-c
Q 006185           51 LLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILDLSKSDVNEIPV-S  127 (657)
Q Consensus        51 ~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~-~  127 (657)
                      ++++.+..|.++++|+.+.+..+ +++++ .+|.+|.+|+.+++..+- .. ....+.++.+|+.+.+..+ +..+.. .
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV-KMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc-eEccchhhcccccchhhcccCc-eeeeccee
Confidence            44788888999999999999743 66664 468889999999997552 22 2366778888887766543 333332 3


Q ss_pred             ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeec
Q 006185          128 FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDI  201 (657)
Q Consensus       128 i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~  201 (657)
                      +..+..+.......   ...+...++.++.+|+.+.+..+...            -....+..+.+|+.+.+..
T Consensus       136 F~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~------------I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          136 FKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMET------------LHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE------------ECTTTTTTCTTCCBCCCCT
T ss_pred             eecccccccccCcc---ccccchhhhcccCCCcEEecCCccce------------eccccccCCCCceEEEcCC
Confidence            55554444333322   34455555888999999988654221            2234566777888777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.79  E-value=2.7e-10  Score=115.57  Aligned_cols=153  Identities=15%  Similarity=0.062  Sum_probs=113.5

Q ss_pred             CCCccEEEccCCCcccc-----CCCC--CCCCCcEEEecCCcCcC-CCchhhcCCCCccEEEecCCcCCC-----CCccc
Q 006185           16 FEDLTGISLMFNDIHEV-----PDGL--ECPKLQALFLQKNHLLV-IPDPFFQGMKDLKVLDLGGIRMVS-----PPSSL   82 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~~   82 (657)
                      ++.+++|++++|.++..     ...+  ..++|++|++++|.+.. -...++..+++|++|+|++|.++.     +...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46899999999998742     2222  34799999999998862 222334557799999999999863     22233


Q ss_pred             -cCCCCCcEEEccCCCCCCC------CcccCCCCCCCEEEeeCCCCCc-----ccccccCCCCCCEEEccCCCCCCCCch
Q 006185           83 -SFLSNLRTLRLDYCNHLPD------LSLIGELSGLEILDLSKSDVNE-----IPVSFGRLSHLRLLDLTDCYNLELIPP  150 (657)
Q Consensus        83 -~~l~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~~~~~~~  150 (657)
                       ....+|++|++++|. ++.      +..+...++|++|++++|.++.     ++..+...++|++|++++|. ++....
T Consensus       151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA  228 (372)
T ss_dssp             HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred             HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence             357889999999998 432      2455789999999999999873     45667888999999999964 443221


Q ss_pred             h----HhhcCccCcEEEcccCccc
Q 006185          151 G----VLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus       151 ~----~~~~l~~L~~L~l~~~~~~  170 (657)
                      .    ++...++|++|++++|.+.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCC
Confidence            1    2456799999999999765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.77  E-value=1.7e-08  Score=102.06  Aligned_cols=93  Identities=18%  Similarity=0.087  Sum_probs=82.8

Q ss_pred             CCCCCCCCCCCCCccEEEccC-CCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185            6 ELKDWPSINTFEDLTGISLMF-NDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus         6 ~l~~~~~~~~~~~L~~L~l~~-~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      ++..+|.+..+++|++|+|++ |.++.++.. + .+++|++|++++|.+..+++..|.++++|++|+|++|+++.+|..+
T Consensus        20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   99 (347)
T 2ifg_A           20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT   99 (347)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred             CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence            788999988899999999996 999998864 4 8999999999999999998888999999999999999999988765


Q ss_pred             cCCCCCcEEEccCCCC
Q 006185           83 SFLSNLRTLRLDYCNH   98 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~   98 (657)
                      .....|++|++.+|..
T Consensus       100 ~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A          100 VQGLSLQELVLSGNPL  115 (347)
T ss_dssp             TCSCCCCEEECCSSCC
T ss_pred             cccCCceEEEeeCCCc
Confidence            4444499999999983

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.54  E-value=3.6e-08  Score=86.64  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=54.8

Q ss_pred             CCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCcccc
Q 006185          492 GNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCF  571 (657)
Q Consensus       492 ~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l  571 (657)
                      ..|+.|++++|. +++..... +..+++|++|++++|..+++-     ++..+...   ...+++|++|+|++|+++++-
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~---~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDG-----CLERLSQL---ENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHH-----HHHHHHTC---HHHHHHCCEEEEESCTTCCHH
T ss_pred             ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHH-----HHHHHHhc---ccccCCCCEEEcCCCCcCCHH
Confidence            467888888876 66643333 356777777777777776532     33222210   001346777777777777764


Q ss_pred             ccCCCcceeeccccceeeeccCCCcce
Q 006185          572 SSSGLHATVEFLALEALQIIDCPGMKT  598 (657)
Q Consensus       572 ~~~~~~~~~~~~sL~~L~i~~C~~l~~  598 (657)
                      ....+.   .+++|++|++++|+++++
T Consensus       131 Gl~~L~---~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GIIALH---HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHGG---GCTTCCEEEEESCTTCCC
T ss_pred             HHHHHh---cCCCCCEEECCCCCCCCc
Confidence            311122   456777777777776665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=6e-08  Score=85.22  Aligned_cols=92  Identities=14%  Similarity=0.214  Sum_probs=67.6

Q ss_pred             CCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhh
Q 006185          436 HNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVK  515 (657)
Q Consensus       436 ~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~  515 (657)
                      ..|++|++++|. +++....                               .+..+++|++|++++|..+++-....+.+
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~-------------------------------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~  108 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFD-------------------------------HMEGLQYVEKIRLCKCHYIEDGCLERLSQ  108 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGG-------------------------------GGTTCSCCCEEEEESCTTCCHHHHHHHHT
T ss_pred             ceEeEEeCcCCC-ccHHHHH-------------------------------HhcCCCCCCEEEeCCCCccCHHHHHHHHh
Confidence            468999999986 6653111                               12367899999999999998864443333


Q ss_pred             ---cccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCcccc
Q 006185          516 ---SLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCF  571 (657)
Q Consensus       516 ---~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l  571 (657)
                         ..++|++|+|++|+++++     .|+.++.       .+++|++|++++|+++++.
T Consensus       109 ~~~~~~~L~~L~Ls~C~~ITD-----~Gl~~L~-------~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          109 LENLQKSMLEMEIISCGNVTD-----KGIIALH-------HFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CHHHHHHCCEEEEESCTTCCH-----HHHHHGG-------GCTTCCEEEEESCTTCCCH
T ss_pred             cccccCCCCEEEcCCCCcCCH-----HHHHHHh-------cCCCCCEEECCCCCCCCch
Confidence               135799999999999874     3553333       4899999999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.38  E-value=3.1e-07  Score=92.26  Aligned_cols=128  Identities=25%  Similarity=0.301  Sum_probs=58.7

Q ss_pred             CCCCCcEEEecCCcCc---------CCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCC--Cccc
Q 006185           37 ECPKLQALFLQKNHLL---------VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPD--LSLI  105 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~  105 (657)
                      .+++|+.|.+.+....         .-...++..+++|+.|+++++.-..++. + .+.+|+.|++..|. +..  ...+
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHHHHH
Confidence            4567777766443211         0111334566666666666653122333 2 25666666666554 221  1222


Q ss_pred             C--CCCCCCEEEeeCC--C------CCcccccc--cCCCCCCEEEccCCCCCCCCchhHhh---cCccCcEEEcccCc
Q 006185          106 G--ELSGLEILDLSKS--D------VNEIPVSF--GRLSHLRLLDLTDCYNLELIPPGVLS---RLRKLEELYMSHSF  168 (657)
Q Consensus       106 ~--~l~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~l~~c~~~~~~~~~~~~---~l~~L~~L~l~~~~  168 (657)
                      +  ++++|++|+|+.+  .      +..+...+  ..+++|++|++.+|......+.. +.   .+++|++|+++.|.
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSC
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCC
Confidence            2  5666666666421  0      11111111  23556666666654332222221 22   35556666665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.35  E-value=2.3e-07  Score=93.18  Aligned_cols=153  Identities=18%  Similarity=0.197  Sum_probs=103.5

Q ss_pred             CCCCCCccEEEccCCCcc----------ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCc
Q 006185           13 INTFEDLTGISLMFNDIH----------EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPS   80 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~   80 (657)
                      +.++++|+.|.+......          .+.... .+++|+.|.++++.-..++.  +. +++|++|++..+.+.. ...
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH
Confidence            456789999998765332          122222 68999999999884335555  33 8999999999888742 222


Q ss_pred             ccc--CCCCCcEEEccCCC--CCCC-----C-ccc--CCCCCCCEEEeeCCCCCc-ccccc---cCCCCCCEEEccCCCC
Q 006185           81 SLS--FLSNLRTLRLDYCN--HLPD-----L-SLI--GELSGLEILDLSKSDVNE-IPVSF---GRLSHLRLLDLTDCYN  144 (657)
Q Consensus        81 ~~~--~l~~L~~L~l~~~~--~~~~-----~-~~~--~~l~~L~~L~l~~~~i~~-lp~~i---~~l~~L~~L~l~~c~~  144 (657)
                      .+.  .+++|++|+|+.+.  ...+     . ..+  ..+++|++|++++|.+.. .+..+   ..+++|++|+++.| .
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-V  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-C
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-C
Confidence            333  78999999986421  1111     1 122  358999999999998872 22222   35789999999884 4


Q ss_pred             CCCC-----chhHhhcCccCcEEEcccCccc
Q 006185          145 LELI-----PPGVLSRLRKLEELYMSHSFCH  170 (657)
Q Consensus       145 ~~~~-----~~~~~~~l~~L~~L~l~~~~~~  170 (657)
                      ++..     +.. +..+++|+.|++++|.+.
T Consensus       291 L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          291 LTDEGARLLLDH-VDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred             CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence            5542     222 356899999999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.34  E-value=4.7e-05  Score=77.95  Aligned_cols=100  Identities=15%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCc---CCCCC-ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEE
Q 006185           40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR---MVSPP-SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILD  115 (657)
Q Consensus        40 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  115 (657)
                      .|+.+.+..+ +..+.+..|.++.+|+.+.+..+.   ++.+. .+|..+.+|+.+.+..+-..-....+..+.+|+.+.
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhccccccc
Confidence            3666666543 445666666666666666665542   33332 345555555555544332111123445555555555


Q ss_pred             eeCCCCCcccc-cccCCCCCCEEEccC
Q 006185          116 LSKSDVNEIPV-SFGRLSHLRLLDLTD  141 (657)
Q Consensus       116 l~~~~i~~lp~-~i~~l~~L~~L~l~~  141 (657)
                      +... ++.++. .+..+.+|+.+.+.+
T Consensus       144 lp~~-~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          144 IPEG-VTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred             ccce-eeeecccceecccccccccccc
Confidence            5432 222222 244455555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.14  E-value=5.5e-05  Score=77.48  Aligned_cols=155  Identities=14%  Similarity=0.120  Sum_probs=106.7

Q ss_pred             CCCCC--CCCCCC-CccEEEccCCCccccCCCC--CCCCCcEEEecCCc---CcCCCchhhcCCCCccEEEecCCcCCCC
Q 006185            7 LKDWP--SINTFE-DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNH---LLVIPDPFFQGMKDLKVLDLGGIRMVSP   78 (657)
Q Consensus         7 l~~~~--~~~~~~-~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~~l~~Lr~L~L~~~~~~~l   78 (657)
                      ++++.  ++..++ .|+.+.+.. .++.|.+..  +|.+|+.+.+..+.   +..+....|.++..|+.+.+..+ ++.+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            34444  355564 589998864 478887766  89999999998763   55788888999999998877654 4444


Q ss_pred             C-ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           79 P-SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        79 p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      + ..|..+.+|+.+.+...-..-....+..+.+|+.+.+..+ ++.+....-...+|+.+.+...  +..+...++..+.
T Consensus       129 ~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~  205 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECF  205 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCT
T ss_pred             hhhhhhhhcccccccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhcc
Confidence            4 4678999999999976542223467888999999998764 5555444223456888877652  3344444466677


Q ss_pred             cCcEEEccc
Q 006185          158 KLEELYMSH  166 (657)
Q Consensus       158 ~L~~L~l~~  166 (657)
                      .+.......
T Consensus       206 ~l~~~~~~~  214 (394)
T 4gt6_A          206 ALSTITSDS  214 (394)
T ss_dssp             TCCEEEECC
T ss_pred             ccceecccc
Confidence            777666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.99  E-value=2.4e-06  Score=77.13  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=61.0

Q ss_pred             hcCCCCccEEEecCC-cCCC-----CCccccCCCCCcEEEccCCCCCCC------CcccCCCCCCCEEEeeCCCCCc---
Q 006185           59 FQGMKDLKVLDLGGI-RMVS-----PPSSLSFLSNLRTLRLDYCNHLPD------LSLIGELSGLEILDLSKSDVNE---  123 (657)
Q Consensus        59 ~~~l~~Lr~L~L~~~-~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~---  123 (657)
                      +...+.|++|+|++| .+..     +...+...++|++|+|++|. +.+      ...+...++|++|++++|.|+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            445555666666655 5531     33444555566666666665 332      1334445666777777776662   


Q ss_pred             --ccccccCCCCCCEEEc--cCCCCCCC-----CchhHhhcCccCcEEEcccCcc
Q 006185          124 --IPVSFGRLSHLRLLDL--TDCYNLEL-----IPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus       124 --lp~~i~~l~~L~~L~l--~~c~~~~~-----~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                        +...+...++|++|++  ++ +.++.     +.. .+...+.|++|++++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence              4555666677777777  55 33433     222 245557788888877754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.97  E-value=4e-06  Score=75.68  Aligned_cols=103  Identities=14%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             CCCCCcEEEecCC-cCcC-----CCchhhcCCCCccEEEecCCcCCC-----CCccccCCCCCcEEEccCCCCCCC----
Q 006185           37 ECPKLQALFLQKN-HLLV-----IPDPFFQGMKDLKVLDLGGIRMVS-----PPSSLSFLSNLRTLRLDYCNHLPD----  101 (657)
Q Consensus        37 ~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~----  101 (657)
                      ..+.|++|++++| .+.+     +.. .+...++|++|+|++|.+..     +...+...++|++|++++|. +.+    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~  111 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL  111 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence            3455566666555 4431     111 23445555666666555531     33344444555666666555 222    


Q ss_pred             --CcccCCCCCCCEEEe--eCCCCCc-----ccccccCCCCCCEEEccC
Q 006185          102 --LSLIGELSGLEILDL--SKSDVNE-----IPVSFGRLSHLRLLDLTD  141 (657)
Q Consensus       102 --~~~~~~l~~L~~L~l--~~~~i~~-----lp~~i~~l~~L~~L~l~~  141 (657)
                        ...+...++|++|++  ++|.++.     +.+.+...++|++|++++
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence              234445555666666  5555541     333344445556665555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=1.6e-06  Score=82.35  Aligned_cols=78  Identities=23%  Similarity=0.237  Sum_probs=51.6

Q ss_pred             cCCCCccEEEecCCcCCCC---CccccCCCCCcEEEccCCCCCCCCcccCCCC--CCCEEEeeCCCCC-ccc-------c
Q 006185           60 QGMKDLKVLDLGGIRMVSP---PSSLSFLSNLRTLRLDYCNHLPDLSLIGELS--GLEILDLSKSDVN-EIP-------V  126 (657)
Q Consensus        60 ~~l~~Lr~L~L~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~-~lp-------~  126 (657)
                      .++++|++|+|++|+++.+   |..+..+++|++|+|++|. ++....+..+.  +|++|++++|.+. .+|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4567777777777777654   3455677777777777777 44434444444  7888888888776 344       2


Q ss_pred             cccCCCCCCEEE
Q 006185          127 SFGRLSHLRLLD  138 (657)
Q Consensus       127 ~i~~l~~L~~L~  138 (657)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            366788888885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.66  E-value=2.4e-05  Score=74.18  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             hcCCCCccE--EEecCCcCCCCCc----cccCCCCCcEEEccCCCCCCC---CcccCCCCCCCEEEeeCCCCCccccccc
Q 006185           59 FQGMKDLKV--LDLGGIRMVSPPS----SLSFLSNLRTLRLDYCNHLPD---LSLIGELSGLEILDLSKSDVNEIPVSFG  129 (657)
Q Consensus        59 ~~~l~~Lr~--L~L~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~lp~~i~  129 (657)
                      |...+.|+.  ++++.|....++.    ...++++|++|+|++|.....   +..++++++|++|+|++|.++.+ ..+.
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence            344455554  5566664333222    225688999999999993332   24556899999999999999876 3355


Q ss_pred             CCC--CCCEEEccCCCCCCCCc------hhHhhcCccCcEEE
Q 006185          130 RLS--HLRLLDLTDCYNLELIP------PGVLSRLRKLEELY  163 (657)
Q Consensus       130 ~l~--~L~~L~l~~c~~~~~~~------~~~~~~l~~L~~L~  163 (657)
                      .++  +|++|++++|...+.+|      ..++..+++|+.|+
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            555  99999999976554454      23477899999987

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.66  E-value=0.0057  Score=61.94  Aligned_cols=126  Identities=10%  Similarity=0.101  Sum_probs=73.0

Q ss_pred             CCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCC
Q 006185            9 DWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFL   85 (657)
Q Consensus         9 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l   85 (657)
                      ..|......+++.+.+. ..++.|++..  +|.+|+.+.+..+ +..+.+..|.++ +|..+.+..+ ++.+.. .|.. 
T Consensus        38 ~~~~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-  112 (379)
T 4h09_A           38 NIPWYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-  112 (379)
T ss_dssp             GSTTGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-
T ss_pred             cccccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-
Confidence            34555666778888874 4577777765  7888888888654 557777778777 5776666543 444443 3333 


Q ss_pred             CCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccC
Q 006185           86 SNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTD  141 (657)
Q Consensus        86 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~  141 (657)
                      .+|+.+.+..+-..-....+.+. +|+...+... ++.+. ..+..+.+++...+..
T Consensus       113 ~~L~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          113 TDLDDFEFPGATTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred             CCcccccCCCccccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence            36888877654311112333333 4555544432 33222 2355666666665554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.89  E-value=0.0065  Score=61.50  Aligned_cols=105  Identities=16%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             hhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCC
Q 006185           58 FFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLR  135 (657)
Q Consensus        58 ~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~  135 (657)
                      .|.....|+.+.+..+ +..+ ...+.++.+|+.+.+..+-..-....+.++.+|+.+.+.. .++.++. .+..+.+|+
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence            3455555665555433 2222 2344555566666555432111124455555566665543 2444433 255556666


Q ss_pred             EEEccCCCCCCCCchhHhhcCccCcEEEcc
Q 006185          136 LLDLTDCYNLELIPPGVLSRLRKLEELYMS  165 (657)
Q Consensus       136 ~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~  165 (657)
                      .+.+.+ ..++.++..++.++.+|+.+.+.
T Consensus       290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             EEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccc-cccceehhhhhcCCCCCCEEEcC
Confidence            666554 33445555555566666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.60  E-value=0.0034  Score=52.32  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=40.6

Q ss_pred             cEEEccCCCcc--ccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC
Q 006185           20 TGISLMFNDIH--EVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM   75 (657)
Q Consensus        20 ~~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~   75 (657)
                      ++++.+++.++  .+|..+- ++|++|+|++|.+..++..+|..+++|++|+|++|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            46777777777  7776532 3578888888888888877777788888887777754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.70  E-value=0.056  Score=44.78  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=35.4

Q ss_pred             EEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185          113 ILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus       113 ~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      +++-++.+++  .+|..+.  .+|++|++++ +.++.++.+++..+++|+.|+|.+|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            5566666666  6665443  3577777777 556677766667777777777777643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.44  E-value=0.023  Score=50.73  Aligned_cols=86  Identities=12%  Similarity=0.066  Sum_probs=42.5

Q ss_pred             cccCCCCCcEEEccCCCCCCCC------cccCCCCCCCEEEeeCCCCC-----cccccccCCCCCCEEEccCCC--CCCC
Q 006185           81 SLSFLSNLRTLRLDYCNHLPDL------SLIGELSGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTDCY--NLEL  147 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~--~~~~  147 (657)
                      .+..-..|+.|+|++|. +.+.      ..+..-+.|++|+|++|.|+     .+-+.+..-+.|++|+++++.  .++.
T Consensus        65 aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~  143 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  143 (197)
T ss_dssp             HHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence            33344445555555554 2221      22333455666666666555     233344455567777776532  2221


Q ss_pred             -----CchhHhhcCccCcEEEcccCc
Q 006185          148 -----IPPGVLSRLRKLEELYMSHSF  168 (657)
Q Consensus       148 -----~~~~~~~~l~~L~~L~l~~~~  168 (657)
                           +.. ++..-+.|..|+++.+.
T Consensus       144 ~g~~~ia~-aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          144 QVEMDMMM-AIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHH-HHHhCCCcCeEeccCCC
Confidence                 111 24445677777776553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.33  E-value=0.04  Score=49.10  Aligned_cols=58  Identities=10%  Similarity=0.185  Sum_probs=31.3

Q ss_pred             CCCCCcEEEccCCCCCCCC------cccCCCCCCCEEEeeCCCCC-----cccccccCCCCCCEEEccC
Q 006185           84 FLSNLRTLRLDYCNHLPDL------SLIGELSGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTD  141 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~  141 (657)
                      +-..|++|+|++++.+.+.      ..+..-..|+.|+|++|.+.     .+.+.+..-+.|++|++++
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence            3455666666654223321      34445566777777777665     2333344445666666666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	657
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 28/182 (15%)

Query: 6   ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDL 65
           ++ D   +    +L  +SL  N + ++        L  L L  N +  +      G+  L
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 265

Query: 66  KVLDLGGIRMVSPPSSLSF---------------------LSNLRTLRLDYCNHLPDLSL 104
             L LG  ++ +                            L NL  L L + N++ D+S 
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF-NNISDISP 324

Query: 105 IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164
           +  L+ L+ L  + + V+++  S   L+++  L        +L P   L+ L ++ +L +
Sbjct: 325 VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGL 380

Query: 165 SH 166
           + 
Sbjct: 381 ND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 53  VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLE 112
           +  D         K+  + G   V+   S + L  + TL+ D    +  +  +  L+ L 
Sbjct: 15  IFTDTALAE----KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-IKSIDGVEYLNNLT 69

Query: 113 ILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN 144
            ++ S + + +I      L+ L  + + +   
Sbjct: 70  QINFSNNQLTDIT-PLKNLTKLVDILMNNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 97  NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRL 156
            ++ D     +L  +  L   +  +  I      L++L  ++ ++    ++ P   L  L
Sbjct: 32  TNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP---LKNL 87

Query: 157 RKLEELYMSHSFCHWQF 173
            KL ++ M+++      
Sbjct: 88  TKLVDILMNNNQIADIT 104

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 54/283 (19%), Positives = 97/283 (34%), Gaps = 20/283 (7%)

Query: 18  DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS 77
            L  +      + +VP  L  P    L LQ N +  I D  F+ +K+L  L L   ++  
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 78  -PPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
             P + + L  L  L L   N L +L      +  E+              F  L+ + +
Sbjct: 70  ISPGAFAPLVKLERLYLS-KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 137 LDLTDCYNLEL-IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLT 195
           ++L         I  G    ++KL  + ++               +N   I  G    LT
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIAD--------------TNITTIPQGLPPSLT 174

Query: 196 SLHIDIPK--GEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD 253
            LH+D  K       S   L NL    ++      +++       +  +       L + 
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 254 MRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNEL 296
               A H +I+ + L +  ++ I  ND      N     ++ +
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 45  FLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL 104
               N               L+ L++   +++  P+       L  L   + NHL ++  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASF-NHLAEVP- 320

Query: 105 IGELSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
                 L+ L +  + + E P     +  LR+
Sbjct: 321 -ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 10  WPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
               +    L  +++  N + E+P     P+L+ L    NHL  +P+      ++LK L 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPALP--PRLERLIASFNHLAEVPE----LPQNLKQLH 330

Query: 70  LGGIRMVSPPSSLSFLSNLR 89
           +    +   P     + +LR
Sbjct: 331 VEYNPLREFPDIPESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 89  RTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELI 148
           +TL L   N  PD++      G+      +S +++          ++ +DL++       
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 149 PPGVLSRLRKLEELYMSH 166
             G+LS+  KL+ L +  
Sbjct: 63  LHGILSQCSKLQNLSLEG 80

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 68  LDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNE--IP 125
           LDL G  +    +       +   R         L+       ++ +DLS S +    + 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF 173
               + S L+ L L      + I    L++   L  L +S      +F
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEF 111

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 41/257 (15%), Positives = 71/257 (27%), Gaps = 13/257 (5%)

Query: 17  EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
           E     S     +  VP G+     Q +FL  N +  +P   F+  ++L +L L    + 
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 77  SPPSSLSFLSNLRTLRLDYCNHL---PDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSH 133
              ++      L        N      D +    L  L  L L +  + E+     R   
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 134 LRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR 193
                      L+ +P      L  L  L++  +      E       +   + L     
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 194 LTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD 253
                        + +     N  S  +       L     L L +    C        D
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC--------D 240

Query: 254 MRISALHSWIKNLLLRS 270
            R   L +W++     S
Sbjct: 241 CRARPLWAWLQKFRGSS 257

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 64  DLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDV 121
           D++ LD+    +        L  L   + +RLD C                   L+++  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG------------------LTEARC 44

Query: 122 NEIPVSFGRLSHLRLLDLTDCY----NLELIPPGVLSRLRKLEELYMSHSFCHWQF 173
            +I  +      L  L+L         +  +  G+ +   K+++L + +       
Sbjct: 45  KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 5/140 (3%)

Query: 27  NDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG--IRMVSPPSSLSF 84
             I +        + + L L+   + VI +     +     +D     IR +     L  
Sbjct: 6   ELIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRR 64

Query: 85  LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDC-- 142
           L  L       C     L          IL  +             L  L  L +     
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 143 YNLELIPPGVLSRLRKLEEL 162
            N +     V+ ++ ++  L
Sbjct: 125 TNKKHYRLYVIYKVPQVRVL 144

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 38  CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLRLDYC 96
               +      N+L  +P+  F G     +LD+   R+ S P   L  L  LR       
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

Query: 97  NHLPDL 102
             LP L
Sbjct: 236 KKLPTL 241

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 83  SFLSNLRTLRLDYC--NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLT 140
           + L+NL  L       N + D+S +  L  L  + L  + ++++       S+L ++ LT
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT 225

Query: 141 D 141
           +
Sbjct: 226 N 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	657
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.37

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=4.9e-21  Score=195.66  Aligned_cols=198  Identities=21%  Similarity=0.261  Sum_probs=138.1

Q ss_pred             CCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCC
Q 006185            7 LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLS   86 (657)
Q Consensus         7 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~   86 (657)
                      +.+....+.+.++++|+++++.|++++....+++|++|++++|.+.++++  |+++++|++|++++|++..++. +++++
T Consensus        34 ~~~~~~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~  110 (384)
T d2omza2          34 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLT  110 (384)
T ss_dssp             TTSEECHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             CCCccCHHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc-ccccc
Confidence            33333445677899999999999888644488999999999999888876  7899999999999999887764 88999


Q ss_pred             CCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccc--------------------ccccCCCCCCEEEccCCCCCC
Q 006185           87 NLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP--------------------VSFGRLSHLRLLDLTDCYNLE  146 (657)
Q Consensus        87 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--------------------~~i~~l~~L~~L~l~~c~~~~  146 (657)
                      +|++|+++++. .+..........+.......+.+..+.                    ..+.............+ .. 
T Consensus       111 ~L~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  187 (384)
T d2omza2         111 NLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KV-  187 (384)
T ss_dssp             TCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CC-
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc-cc-
Confidence            99999998887 555555556666666666654433211                    11222333333333332 12 


Q ss_pred             CCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185          147 LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       147 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  224 (657)
                      ..... ...+++++.++++++.+.             ........++|+.|++.++.+..++....+++|+.+++.++
T Consensus       188 ~~~~~-~~~l~~~~~l~l~~n~i~-------------~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n  251 (384)
T d2omza2         188 SDISV-LAKLTNLESLIATNNQIS-------------DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN  251 (384)
T ss_dssp             CCCGG-GGGCTTCSEEECCSSCCC-------------CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             ccccc-cccccccceeeccCCccC-------------CCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccC
Confidence            22222 678889999998887553             12335667889999999988877766667788888887755

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.2e-19  Score=185.10  Aligned_cols=311  Identities=21%  Similarity=0.290  Sum_probs=181.1

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      ++.++++++.+..+++|++|++++|.++++++..++++|++|++++|.+..+++  ++++++|++|+++++.++.++.. 
T Consensus        52 ~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~~-  128 (384)
T d2omza2          52 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL-  128 (384)
T ss_dssp             CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGG-
T ss_pred             CCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc--ccccccccccccccccccccccc-
Confidence            456788888899999999999999999999876699999999999999988876  78999999999999988765443 


Q ss_pred             cCCCCCcEEEccCCCC--------------------CCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCC
Q 006185           83 SFLSNLRTLRLDYCNH--------------------LPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDC  142 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~--------------------~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c  142 (657)
                      .....+..+....+..                    ......+.............+... .+.....+++++.++++++
T Consensus       129 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~l~~n  207 (384)
T d2omza2         129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNN  207 (384)
T ss_dssp             TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc-cccccccccccceeeccCC
Confidence            2333444444332220                    001122223333333333333222 2233455556666666653


Q ss_pred             CCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEE
Q 006185          143 YNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSIT  222 (657)
Q Consensus       143 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~  222 (657)
                       .+..++.  ....++|++|++++|.+.             .+..+..+++|+.|++.++.+..++....+++|+.|+++
T Consensus       208 -~i~~~~~--~~~~~~L~~L~l~~n~l~-------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  271 (384)
T d2omza2         208 -QISDITP--LGILTNLDELSLNGNQLK-------------DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG  271 (384)
T ss_dssp             -CCCCCGG--GGGCTTCCEEECCSSCCC-------------CCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             -ccCCCCc--ccccCCCCEEECCCCCCC-------------CcchhhcccccchhccccCccCCCCcccccccCCEeecc
Confidence             3334433  345556666666655432             123455556666666666655554444555566666655


Q ss_pred             EcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEee
Q 006185          223 IGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIF  302 (657)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~  302 (657)
                      ++.-...+.+.       .                         +..++.+.+.++ .+++.. .  ...+++++.|+++
T Consensus       272 ~~~l~~~~~~~-------~-------------------------~~~l~~l~~~~n-~l~~~~-~--~~~~~~l~~L~ls  315 (384)
T d2omza2         272 ANQISNISPLA-------G-------------------------LTALTNLELNEN-QLEDIS-P--ISNLKNLTYLTLY  315 (384)
T ss_dssp             SSCCCCCGGGT-------T-------------------------CTTCSEEECCSS-CCSCCG-G--GGGCTTCSEEECC
T ss_pred             CcccCCCCccc-------c-------------------------cccccccccccc-cccccc-c--cchhcccCeEECC
Confidence            43211111110       0                         133444444433 112111 1  1346777777777


Q ss_pred             cCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEE
Q 006185          303 GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLM  382 (657)
Q Consensus       303 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~  382 (657)
                      ++ .++.++.      ...+++|++|++++|. ++++    ...+.+++|++|+++++ .++++.|   +..+++|++|+
T Consensus       316 ~n-~l~~l~~------l~~l~~L~~L~L~~n~-l~~l----~~l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~  379 (384)
T d2omza2         316 FN-NISDISP------VSSLTKLQRLFFANNK-VSDV----SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLG  379 (384)
T ss_dssp             SS-CCSCCGG------GGGCTTCCEEECCSSC-CCCC----GGGGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEE
T ss_pred             CC-CCCCCcc------cccCCCCCEEECCCCC-CCCC----hhHcCCCCCCEEECCCC-cCCCChh---hccCCCCCEee
Confidence            77 4444321      2347778888887773 4432    12446788888888775 5666444   24678888888


Q ss_pred             Ecc
Q 006185          383 VES  385 (657)
Q Consensus       383 l~~  385 (657)
                      |++
T Consensus       380 L~~  382 (384)
T d2omza2         380 LND  382 (384)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.6e-19  Score=168.31  Aligned_cols=197  Identities=20%  Similarity=0.195  Sum_probs=167.1

Q ss_pred             CCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185           15 TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD   94 (657)
Q Consensus        15 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~   94 (657)
                      ....+..++.++++++++|+.+. +++++|++++|.+..++...|.++++|++|++++|+++++|. ++.+++|++|+++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccc
Confidence            34556677999999999997653 579999999999999988888999999999999999988764 5789999999999


Q ss_pred             CCCCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185           95 YCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF  173 (657)
Q Consensus        95 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  173 (657)
                      +|.....+..+.++++|++|+++++.+..++. .+..+.++++|++.+ +.+..++...+..+++|+.+++++|.+..  
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~--  162 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE--  162 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC--
T ss_pred             cccccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhcccccccccc--
Confidence            99866677889999999999999998887654 477899999999999 56778888777889999999999997653  


Q ss_pred             ccccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEEcC
Q 006185          174 ESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGE  225 (657)
Q Consensus       174 ~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~  225 (657)
                               ..+..+..+++|++|++++|.+..+|.. ..+++|+.|++.+++
T Consensus       163 ---------~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         163 ---------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ---------cCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence                     3445678899999999999999988876 678899999998774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=7.9e-18  Score=165.39  Aligned_cols=189  Identities=22%  Similarity=0.251  Sum_probs=106.4

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~   96 (657)
                      ..++++.++..++++|..+. +++++|++++|.+..+++..|.++++|++|+++++.+..+ |..|.++++|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCCCC-CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            45566666666666666442 4667777777766666665566677777777777766654 445666777777777776


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCccccccc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQFE  174 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~  174 (657)
                      .....|..+  ...++.|++.++.+..++.. +.....++.++...+.... ......+..+++|+.+++.++.+.    
T Consensus        90 ~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~----  163 (305)
T d1xkua_          90 QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT----  163 (305)
T ss_dssp             CCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC----
T ss_pred             ccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc----
Confidence            644444322  34566666666666655543 4455566666655532111 111222556666777776665432    


Q ss_pred             cccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEE
Q 006185          175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITI  223 (657)
Q Consensus       175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~  223 (657)
                              ..+.  ...++|+.|+++++........  ..++.++.|.+++
T Consensus       164 --------~l~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         164 --------TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  204 (305)
T ss_dssp             --------SCCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             --------ccCc--ccCCccCEEECCCCcCCCCChhHhhcccccccccccc
Confidence                    1111  1245666777666655333222  3445555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.1e-18  Score=164.38  Aligned_cols=184  Identities=20%  Similarity=0.181  Sum_probs=160.7

Q ss_pred             CCCCCCCCC-CCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185            4 GVELKDWPS-INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS   80 (657)
Q Consensus         4 ~~~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~   80 (657)
                      +++++.+|+ +  .+++++|+|++|.++.++...  .+++|++|++++|.+..++.  ++.+++|++|++++|+++..+.
T Consensus        19 ~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~   94 (266)
T d1p9ag_          19 KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL   94 (266)
T ss_dssp             TSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccccccccccccccccc
Confidence            567888884 4  368999999999999988653  89999999999999988876  6789999999999999999999


Q ss_pred             cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185           81 SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRK  158 (657)
Q Consensus        81 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~  158 (657)
                      .+.++++|++|+++++..... +..+..+.++++|+++++.++.+|.. +..+++|+++++++ +.++.++.+.+..+++
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLEN  173 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTT
T ss_pred             ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc-ccccccCccccccccc
Confidence            999999999999999985554 47778999999999999999988765 67899999999999 5677888777899999


Q ss_pred             CcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185          159 LEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG  204 (657)
Q Consensus       159 L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (657)
                      |++|++++|.+.            .++.++..+++|+.|++++|..
T Consensus       174 L~~L~Ls~N~L~------------~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         174 LDTLLLQENSLY------------TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCEEECCSSCCC------------CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cceeecccCCCc------------ccChhHCCCCCCCEEEecCCCC
Confidence            999999999775            5666778899999999999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=4.4e-17  Score=160.00  Aligned_cols=168  Identities=20%  Similarity=0.213  Sum_probs=114.3

Q ss_pred             CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEee
Q 006185           40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLS  117 (657)
Q Consensus        40 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~  117 (657)
                      ..++++-++..++++|..+   .+.+++|++++|+++++|+ +|.++++|++|++++|..... |..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4567777777777777764   2567888888888887775 577888888888888875554 4667888888888888


Q ss_pred             CCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEE
Q 006185          118 KSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSL  197 (657)
Q Consensus       118 ~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L  197 (657)
                      +|.++.+|..+.  ..++.|++.+ +.+..++...+.....++.++...+....         .......+..+++|+.+
T Consensus        88 ~n~l~~l~~~~~--~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~---------~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          88 KNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCCEE
T ss_pred             CCccCcCccchh--hhhhhhhccc-cchhhhhhhhhhccccccccccccccccc---------cCCCccccccccccCcc
Confidence            888887776533  4677787777 45666666656667777777766553321         11334456677778888


Q ss_pred             EeecCCCccCCCCCCCCCccEEEEEE
Q 006185          198 HIDIPKGEIMPSDMSLPNLTSFSITI  223 (657)
Q Consensus       198 ~l~~~~~~~~~~~~~l~~L~~L~l~~  223 (657)
                      ++..+.+..++.. .+++|++|++.+
T Consensus       156 ~l~~n~l~~l~~~-~~~~L~~L~l~~  180 (305)
T d1xkua_         156 RIADTNITTIPQG-LPPSLTELHLDG  180 (305)
T ss_dssp             ECCSSCCCSCCSS-CCTTCSEEECTT
T ss_pred             ccccCCccccCcc-cCCccCEEECCC
Confidence            8877776655543 245666666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.7e-17  Score=151.33  Aligned_cols=154  Identities=21%  Similarity=0.284  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCC
Q 006185            8 KDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSN   87 (657)
Q Consensus         8 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~   87 (657)
                      .+.+..+.++++++|+++++.+++++....+++|++|++++|.+..+++  |+++++|++|++++|.+..++. +.++++
T Consensus        31 ~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~  107 (199)
T d2omxa2          31 TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTN  107 (199)
T ss_dssp             TSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             CCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-cccccc
Confidence            3333344566777777777777776654467777777777777766655  5777777777777777666653 667777


Q ss_pred             CcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185           88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus        88 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~  167 (657)
                      |++|+++++. ......+..+++|++|++++|.+..++ .+..+++|++|++.+| .+..++.  ++++++|++|++++|
T Consensus       108 L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~--l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         108 LTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN-QVTDLKP--LANLTTLERLDISSN  182 (199)
T ss_dssp             CSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred             cccccccccc-cccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccc-cccCCcc--ccCCCCCCEEECCCC
Confidence            7777777766 344455667777777777777776654 4667777777777774 4555554  667777777777776


Q ss_pred             cc
Q 006185          168 FC  169 (657)
Q Consensus       168 ~~  169 (657)
                      .+
T Consensus       183 ~i  184 (199)
T d2omxa2         183 KV  184 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.4e-17  Score=158.81  Aligned_cols=208  Identities=25%  Similarity=0.328  Sum_probs=171.0

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCC-cCCCC-C
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGI-RMVSP-P   79 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~~~~l-p   79 (657)
                      +.+++.+|. .-.+.+++|+|++|.++.+|...  ++++|++|+++++.+..++...+..+..++.+....+ .++.+ +
T Consensus        20 ~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~   98 (284)
T d1ozna_          20 QQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (284)
T ss_dssp             SSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456788884 23477899999999999998754  8899999999999998888888889999999987654 56666 5


Q ss_pred             ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185           80 SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR  157 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~  157 (657)
                      ..+.++++|++|++++|..... +..+....+|+.++++++.++.+|. .+..+++|++|+++++ .++.++..++.+++
T Consensus        99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~  177 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH  177 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred             hhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC-cccccchhhhcccc
Confidence            6789999999999999985443 4677888999999999999998865 4788999999999994 67788777788999


Q ss_pred             cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185          158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG  224 (657)
Q Consensus       158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~  224 (657)
                      +|+++++++|.+..           ..+..+..+++|+.|+++.|.+..++..  ..+++|+.|++.++
T Consensus       178 ~L~~l~l~~N~l~~-----------i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         178 SLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccchhhhhhccccc-----------cChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            99999999886643           4567788899999999999998777654  67888999998876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3e-17  Score=153.47  Aligned_cols=198  Identities=19%  Similarity=0.288  Sum_probs=165.3

Q ss_pred             CCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccC
Q 006185            5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF   84 (657)
Q Consensus         5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~   84 (657)
                      .++.+....+.+.+|+.|++.+|.+++++....+++|++|++++|.+..+++  |.++++|++++++++.++.++ .+..
T Consensus        29 ~~~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~  105 (227)
T d1h6ua2          29 SNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAG  105 (227)
T ss_dssp             SSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred             CCcCCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-cccc
Confidence            3455555567789999999999999999754599999999999999887776  789999999999999988775 5789


Q ss_pred             CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185           85 LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM  164 (657)
Q Consensus        85 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l  164 (657)
                      +++|++++++++. ......+...+.++.+.++++.+...+ .+.+.++|++|++.+| .+...+.  ++++++|++|++
T Consensus       106 l~~L~~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~L  180 (227)
T d1h6ua2         106 LQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKA  180 (227)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccccccccccc-ccccchhccccchhhhhchhhhhchhh-hhcccccccccccccc-ccccchh--hcccccceeccc
Confidence            9999999999988 566677888999999999998887654 4778899999999995 4445544  789999999999


Q ss_pred             ccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEE
Q 006185          165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITI  223 (657)
Q Consensus       165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  223 (657)
                      ++|.+.             .+..++++++|++|++++|++..++....+++|+.|++++
T Consensus       181 s~n~l~-------------~l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         181 DDNKIS-------------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCC-------------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             CCCccC-------------CChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            998653             2345888999999999999988888777899999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.4e-17  Score=151.73  Aligned_cols=145  Identities=30%  Similarity=0.404  Sum_probs=74.5

Q ss_pred             CCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccC
Q 006185           16 FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDY   95 (657)
Q Consensus        16 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~   95 (657)
                      +..+++|++++|.++.++....+++|++|++++|.+..+++  ++.+++|++|++++|+++.+| .+..+++|+.|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc-ccccccccccccccc
Confidence            44555555555555555433355555555555555554443  345555555555555555544 345555555555555


Q ss_pred             CCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCc
Q 006185           96 CNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF  168 (657)
Q Consensus        96 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~  168 (657)
                      |. ...+..+..+++|++++++++.++..+ .+.++++|+++++++| .+..++.  +.++++|++|++++|.
T Consensus       122 ~~-~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~--l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         122 NG-ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             SC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             cc-ccccccccccccccccccccccccccc-cccccccccccccccc-ccccccc--ccCCCCCCEEECCCCC
Confidence            55 333444555555555555555554432 3444555555555553 3334432  4555555555555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=7.7e-16  Score=154.46  Aligned_cols=177  Identities=18%  Similarity=0.143  Sum_probs=120.6

Q ss_pred             CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185           17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC   96 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~   96 (657)
                      .++++|+++++.++.+|+.  .++|++|++++|.+.++|+.    ..+|+.|++++++++.++...   ..|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhhc---ccccccccccc
Confidence            4688999999999988864  56899999999998888863    468899999999887766421   46899999988


Q ss_pred             CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185           97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE  176 (657)
Q Consensus        97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~  176 (657)
                      .....| .++++++|++|+++++.+...|..+   ..+..+.+.++... ....  +..++.++.+++.++....     
T Consensus       109 ~l~~lp-~~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~~-~~~~--l~~l~~l~~L~l~~n~~~~-----  176 (353)
T d1jl5a_         109 QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKK-----  176 (353)
T ss_dssp             CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-----
T ss_pred             cccccc-chhhhccceeecccccccccccccc---ccccchhhcccccc-cccc--ccccccceecccccccccc-----
Confidence            844444 5688899999999988888766544   45566766663322 2222  5778888888887764321     


Q ss_pred             cccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185          177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  224 (657)
                             .+   ......+.+.........++....++.|+.+.+.++
T Consensus       177 -------~~---~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n  214 (353)
T d1jl5a_         177 -------LP---DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN  214 (353)
T ss_dssp             -------CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             -------cc---cccccccccccccccccccccccccccccccccccc
Confidence                   10   111233445555555555555556666777666544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.71  E-value=4.4e-17  Score=160.61  Aligned_cols=127  Identities=22%  Similarity=0.312  Sum_probs=63.7

Q ss_pred             CCcEEEecCCcCc---CCCchhhcCCCCccEEEecC-CcCC-CCCccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCE
Q 006185           40 KLQALFLQKNHLL---VIPDPFFQGMKDLKVLDLGG-IRMV-SPPSSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEI  113 (657)
Q Consensus        40 ~L~~L~l~~~~~~---~~~~~~~~~l~~Lr~L~L~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~  113 (657)
                      +++.|+++++.+.   .+|+. ++++++|++|+|++ |++. .+|..|+++++|++|++++|..... +..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            4555555555444   24444 35555555555554 3332 4555555555555555555553222 244555555555


Q ss_pred             EEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC-cEEEcccCc
Q 006185          114 LDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL-EELYMSHSF  168 (657)
Q Consensus       114 L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L-~~L~l~~~~  168 (657)
                      ++++++.+. .+|..++++++|++++++++...+.+|.. +..+.++ +.+++++|.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccc
Confidence            555555433 44555555555555555554433344444 4444443 445555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.4e-16  Score=145.24  Aligned_cols=181  Identities=19%  Similarity=0.267  Sum_probs=148.9

Q ss_pred             CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCC
Q 006185           18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~   97 (657)
                      ++....++.+.+++......++++++|+++++.+.++..  ++.+++|++|++++|+++.++. ++++++|++|++++|.
T Consensus        19 ~~i~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             HHHHHHhCCCCCCCccCHHHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc-ccCCcccccccccccc
Confidence            333455666777665544467899999999999988765  6889999999999999988875 8999999999999998


Q ss_pred             CCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccccc
Q 006185           98 HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEE  177 (657)
Q Consensus        98 ~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~  177 (657)
                       ......++++++|++|+++++.+..++ .+..+++|++|++++| .+..++.  +..+++|++|++.+|.+.       
T Consensus        96 -~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~~~~L~~L~l~~n~l~-------  163 (199)
T d2omxa2          96 -IADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLNFSSNQVT-------  163 (199)
T ss_dssp             -CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCC-------
T ss_pred             -ccccccccccccccccccccccccccc-ccchhhhhHHhhhhhh-hhccccc--cccccccccccccccccc-------
Confidence             555556899999999999999887654 5889999999999995 4666664  789999999999998653       


Q ss_pred             ccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEE
Q 006185          178 DTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSF  219 (657)
Q Consensus       178 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  219 (657)
                            .+..++++++|+.|++++|++..++....+++|++|
T Consensus       164 ------~l~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         164 ------DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ------CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             ------CCccccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence                  234588999999999999998877766677888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.6e-16  Score=146.03  Aligned_cols=156  Identities=22%  Similarity=0.334  Sum_probs=138.9

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      +++.++.++.+..+++|++|++++|.+++++....+++|++|++++|.+..++.  +.++++|++|+++++.+..++ .+
T Consensus        54 ~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~~~~~~~-~l  130 (210)
T d1h6ta2          54 NNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN-GL  130 (210)
T ss_dssp             TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCG-GG
T ss_pred             cCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccccccccccc-cc
Confidence            356778888899999999999999999998876689999999999999988875  789999999999999987765 58


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                      ..+.+|++++++++. ++.+..++++++|++++++++.++.++. +.++++|++|++++| .+++++.  +.++++|++|
T Consensus       131 ~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~--l~~l~~L~~L  205 (210)
T d1h6ta2         131 VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVL  205 (210)
T ss_dssp             GGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG--GTTCTTCSEE
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccc-ccCCCCCCEEECCCC-CCCCChh--hcCCCCCCEE
Confidence            899999999999998 7777888999999999999999998864 899999999999995 6778874  8999999999


Q ss_pred             Eccc
Q 006185          163 YMSH  166 (657)
Q Consensus       163 ~l~~  166 (657)
                      ++++
T Consensus       206 ~Ls~  209 (210)
T d1h6ta2         206 ELFS  209 (210)
T ss_dssp             EEEE
T ss_pred             EccC
Confidence            9864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=1.2e-17  Score=164.68  Aligned_cols=246  Identities=17%  Similarity=0.218  Sum_probs=178.8

Q ss_pred             CCccEEEccCCCcc---ccCCCC-CCCCCcEEEecC-CcCc-CCCchhhcCCCCccEEEecCCcCCC-CCccccCCCCCc
Q 006185           17 EDLTGISLMFNDIH---EVPDGL-ECPKLQALFLQK-NHLL-VIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLR   89 (657)
Q Consensus        17 ~~L~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~~~l~~L~   89 (657)
                      .+++.|+++++.+.   .+|+.+ ++++|++|++++ |.+. .+|.. |+++++|++|++++|++.. .+..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhc
Confidence            36889999999876   577777 899999999987 5666 78877 5899999999999999875 456688999999


Q ss_pred             EEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCC-CEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185           90 TLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHL-RLLDLTDCYNLELIPPGVLSRLRKLEELYMSH  166 (657)
Q Consensus        90 ~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L-~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~  166 (657)
                      ++++++|... ..|..++++++|++++++++.+. .+|..+..+.++ +.++++++...+..|.. +..+..+ .+++.+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNLA-FVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCCS-EEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccccc-cccccc
Confidence            9999998743 45789999999999999999887 788888888886 78888885444444443 6666544 677776


Q ss_pred             CccccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccc-cC
Q 006185          167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNK-RC  244 (657)
Q Consensus       167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~  244 (657)
                      +...    |       ..+..+..+++++.+++..+... .++....+++|+.|+++++.      +.+.+|+.+.. +.
T Consensus       207 ~~~~----~-------~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~------l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         207 NMLE----G-------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR------IYGTLPQGLTQLKF  269 (313)
T ss_dssp             SEEE----E-------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC------CEECCCGGGGGCTT
T ss_pred             cccc----c-------cccccccccccccccccccccccccccccccccccccccCccCe------ecccCChHHhCCCC
Confidence            6432    2       45566677788888888877653 33434566788888887663      23333444433 77


Q ss_pred             cceEEeecccchhhhHHHHHHHHccccEEEEeeccccccc
Q 006185          245 SRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENI  284 (657)
Q Consensus       245 l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~  284 (657)
                      ++.+++++|.--..+|+. .. +++|+.+.+.+++.++..
T Consensus       270 L~~L~Ls~N~l~g~iP~~-~~-L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         270 LHSLNVSFNNLCGEIPQG-GN-LQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCEEECCSSEEEEECCCS-TT-GGGSCGGGTCSSSEEEST
T ss_pred             CCEEECcCCcccccCCCc-cc-CCCCCHHHhCCCccccCC
Confidence            888888887332345532 22 377888888877655543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.8e-16  Score=150.59  Aligned_cols=192  Identities=20%  Similarity=0.264  Sum_probs=158.1

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNH   98 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~   98 (657)
                      .+++.++++++.+|..+- +.+++|++++|.+..+++..|.++++|++|+++++.+..++ ..+..+..++.+....+..
T Consensus        14 ~~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCCCCCCccCCCCC-CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            356788888999987653 57899999999999999988999999999999999997654 4567889999998876664


Q ss_pred             CCC--CcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185           99 LPD--LSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES  175 (657)
Q Consensus        99 ~~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g  175 (657)
                      ++.  +..++++++|++|+++++.+..++. .+....+|+.+++++ +.++.+|.+++..+++|++|++++|.+..    
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~----  167 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISS----  167 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCE----
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCcccc----
Confidence            543  5789999999999999999886654 577899999999999 66888887778899999999999997642    


Q ss_pred             ccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185          176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG  224 (657)
Q Consensus       176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~  224 (657)
                             .....+.++++|+.+++..|.+..+...  ..+++|+.|+++.+
T Consensus       168 -------l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         168 -------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             -------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -------cchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence                   3446678899999999999988666543  56677888877755

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.3e-15  Score=142.18  Aligned_cols=178  Identities=24%  Similarity=0.360  Sum_probs=152.5

Q ss_pred             CCCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185            3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL   82 (657)
Q Consensus         3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~   82 (657)
                      .++++++++.+..+++|++|++++|.++.++....+++|+++++++|.+..++.  |.++++|++++++++....++ .+
T Consensus        49 ~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~~~~~~~~~-~~  125 (227)
T d1h6ua2          49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT-PL  125 (227)
T ss_dssp             TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCG-GG
T ss_pred             CCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc--ccccccccccccccccccccc-hh
Confidence            356788999999999999999999999988776689999999999999888775  789999999999999876553 46


Q ss_pred             cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185           83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL  162 (657)
Q Consensus        83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L  162 (657)
                      .....++.+.++++. +.....+.+.++|++|+++++.+...+ .++++++|++|++++| .++.++.  ++++++|++|
T Consensus       126 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~--l~~l~~L~~L  200 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISDISP--LASLPNLIEV  200 (227)
T ss_dssp             TTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEE
T ss_pred             ccccchhhhhchhhh-hchhhhhccccccccccccccccccch-hhcccccceecccCCC-ccCCChh--hcCCCCCCEE
Confidence            778899999999888 555666888999999999999988765 4899999999999995 6778875  8999999999


Q ss_pred             EcccCccccccccccccccccchhhhcCCCCccEEEeec
Q 006185          163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDI  201 (657)
Q Consensus       163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~  201 (657)
                      ++++|.+.             .+..++++++|+.|+++.
T Consensus       201 ~Ls~N~lt-------------~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQIS-------------DVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCC-------------BCGGGTTCTTCCEEEEEE
T ss_pred             ECcCCcCC-------------CCcccccCCCCCEEEeeC
Confidence            99999753             234588999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=8.8e-15  Score=146.56  Aligned_cols=188  Identities=20%  Similarity=0.257  Sum_probs=133.8

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS   83 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~   83 (657)
                      +.+++.+|..  +++|++|++++|.++++|+.  ..+|++|++++|.+..+++  +  .+.|++|++++|.+..+|. ++
T Consensus        47 ~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n~l~~lp~-~~  117 (353)
T d1jl5a_          47 NLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLEKLPE-LQ  117 (353)
T ss_dssp             TSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCSSCCC-CT
T ss_pred             CCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--h--ccccccccccccccccccc-hh
Confidence            4577888854  57999999999999999975  4689999999999887765  2  2569999999999999985 68


Q ss_pred             CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185           84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY  163 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~  163 (657)
                      ++++|++|+++++.....+..   ...+..+++..+.... +..++.++.++.+++.++. ....+.    .....+.+.
T Consensus       118 ~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~-~~~~~~----~~~~~~~l~  188 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS-LKKLPD----LPLSLESIV  188 (353)
T ss_dssp             TCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSSCCC----CCTTCCEEE
T ss_pred             hhccceeeccccccccccccc---cccccchhhccccccc-cccccccccceeccccccc-cccccc----ccccccccc
Confidence            899999999999985544443   3556777777665443 3457788899999998843 333332    122344555


Q ss_pred             cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185          164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG  224 (657)
Q Consensus       164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  224 (657)
                      .....+             ........++.|+.++++.+....++..  ..++..+.+..+
T Consensus       189 ~~~~~~-------------~~~~~~~~l~~L~~l~l~~n~~~~~~~~--~~~l~~~~~~~~  234 (353)
T d1jl5a_         189 AGNNIL-------------EELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN  234 (353)
T ss_dssp             CCSSCC-------------SSCCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSS
T ss_pred             cccccc-------------cccccccccccccccccccccccccccc--cccccccccccc
Confidence            544332             2233466788899999988876655543  445666655543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.1e-15  Score=141.73  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             cEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCC--CcccCCCCCCCEEEeeC
Q 006185           42 QALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPD--LSLIGELSGLEILDLSK  118 (657)
Q Consensus        42 ~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~  118 (657)
                      +++|++++.+. +....++.  .....+.++...+...........+|++|++++|.....  ...+.++++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35666666543 22222222  234555555554443333344556777777777652211  24456677777777777


Q ss_pred             CCCC-cccccccCCCCCCEEEccCCCCCCCCch-hHhhcCccCcEEEcccC
Q 006185          119 SDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPP-GVLSRLRKLEELYMSHS  167 (657)
Q Consensus       119 ~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~-~~~~~l~~L~~L~l~~~  167 (657)
                      |.++ ..+..++++++|++|++++|..+++... .+...+++|++|++++|
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            7665 4455667777777777777766654321 11345667777776665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.2e-14  Score=116.26  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=66.0

Q ss_pred             cEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCC
Q 006185           42 QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDV  121 (657)
Q Consensus        42 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i  121 (657)
                      |+|++++|.++.++.  +..+++|++|++++|.++++|..++.+++|++|++++|. ++..+.++++++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCccccccccCeEECCCCcc
Confidence            456666666665554  456666666666666666666666666666666666665 33334466666666666666666


Q ss_pred             Ccccc--cccCCCCCCEEEccCCCCCC---CCchhHhhcCccCcEE
Q 006185          122 NEIPV--SFGRLSHLRLLDLTDCYNLE---LIPPGVLSRLRKLEEL  162 (657)
Q Consensus       122 ~~lp~--~i~~l~~L~~L~l~~c~~~~---~~~~~~~~~l~~L~~L  162 (657)
                      +.+|.  .+..+++|++|+++++. +.   ..+..++..+++|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            65542  35556666666666532 22   2223333445555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.5e-15  Score=143.92  Aligned_cols=190  Identities=15%  Similarity=0.131  Sum_probs=125.9

Q ss_pred             ccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhH
Q 006185          292 DFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHL  371 (657)
Q Consensus       292 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~  371 (657)
                      ...+|++|++++|. +.   ..........+++|++|.+++|. +.+.....  .+.+++|++|++++|..+++.....+
T Consensus        44 ~~~~L~~LdLs~~~-i~---~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~--l~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IE---VSTLHGILSQCSKLQNLSLEGLR-LSDPIVNT--LAKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             CCBCCCEEECTTCE-EC---HHHHHHHHTTBCCCSEEECTTCB-CCHHHHHH--HTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             cCCCCCEEECCCCc-cC---HHHHHHHHHhCCCcccccccccC-CCcHHHHH--HhcCCCCcCccccccccccccccchh
Confidence            35789999998882 22   11111134468999999999985 33221111  23678999999999999887554555


Q ss_pred             HHhcccCcEEEEcccccceeeeecccccccccc-cccCCcccEEecCCCc-CcccccCCCCcccccCCccEEEeccCccc
Q 006185          372 VQSFQNLQRLMVESCELLVSVFEIERVNIAKEE-TELFSSLEKLTLIDLP-RMTDIWKGDTQFVSLHNLKKVRVEECDEL  449 (657)
Q Consensus       372 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~-~L~~l~~~~~~~~~~~~L~~L~i~~C~~L  449 (657)
                      +..+++|++|++++|..+++-.    .   ... ...++.|+.|++++|. .+++-. ...-...+|+|++|++++|+.+
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~----~---~~~~~~~~~~L~~L~l~~~~~~i~~~~-l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKH----V---QVAVAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHH----H---HHHHHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTTCSEEECTTCTTC
T ss_pred             hHHHHhcccccccccccccccc----c---hhhhcccccccchhhhccccccccccc-ccccccccccccccccccccCC
Confidence            6789999999999998765320    0   011 1235789999999874 344310 0111235789999999999888


Q ss_pred             ccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecC
Q 006185          450 RQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSC  528 (657)
Q Consensus       450 ~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C  528 (657)
                      ++.....+                               ..+++|++|++++|.++++-.... +..+++|++|++++|
T Consensus       189 td~~~~~l-------------------------------~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         189 KNDCFQEF-------------------------------FQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGGGGG-------------------------------GGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             Cchhhhhh-------------------------------cccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            76533333                               256778888888888877653333 356788888888887

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=126.58  Aligned_cols=124  Identities=16%  Similarity=0.148  Sum_probs=67.4

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCCCEEE
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLS-LIGELSGLEILD  115 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~  115 (657)
                      ++.++|+|++++|.+..++. .+..+++|++|++++|++++++ .+..+++|++|++++|.....+. .+..+++|++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            44455555555555555543 2345555666666665555542 35555566666666655333332 234566666666


Q ss_pred             eeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCch---hHhhcCccCcEEE
Q 006185          116 LSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPP---GVLSRLRKLEELY  163 (657)
Q Consensus       116 l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~---~~~~~l~~L~~L~  163 (657)
                      +++|.++.+++  .+..+++|++|++++| .+...|.   .++..+++|+.|+
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeC
Confidence            66666655543  3556666666666663 2333331   2356677777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-13  Score=127.52  Aligned_cols=191  Identities=18%  Similarity=0.209  Sum_probs=108.2

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-C-CccccCCCCCcEEEccCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-P-PSSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-l-p~~~~~l~~L~~L~l~~~~   97 (657)
                      ++++.++..++++|+.+. +++++|++++|.+..++...|.++++|++|++++|.+.. + +..|.++.+++++.+..+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            566677766777776442 467777777777777776666777777777777776654 2 2356677777777766544


Q ss_pred             CCC--CCcccCCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCc-cCcEEEcccCccccc
Q 006185           98 HLP--DLSLIGELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR-KLEELYMSHSFCHWQ  172 (657)
Q Consensus        98 ~~~--~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~  172 (657)
                      .+.  .+..+.++++|++++++++.++..+.  .+..+..+..+...+ ..+..++...+..+. .++.|+++++.+.  
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~--  166 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQ--  166 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCC--
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccc-cccccccccccccccccceeeeccccccc--
Confidence            232  23556777777777777776665443  122333333333333 445555444344443 5666776665443  


Q ss_pred             cccccccccccchhhhcCCCCccEEE-eecCCCccCCCC--CCCCCccEEEEEEc
Q 006185          173 FESEEDTRSNAKFIELGALSRLTSLH-IDIPKGEIMPSD--MSLPNLTSFSITIG  224 (657)
Q Consensus       173 ~~g~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~--~~l~~L~~L~l~~~  224 (657)
                                ..........+++.+. +.++.++.++..  .++++|+.|+++++
T Consensus       167 ----------~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         167 ----------EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             ----------EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             ----------ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC
Confidence                      2222233344444443 344555555543  45566666666544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.5e-14  Score=123.55  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=72.6

Q ss_pred             CCCCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCC
Q 006185           10 WPSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSN   87 (657)
Q Consensus        10 ~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~   87 (657)
                      .|++..+.++|.|++++|.|+.++... .+++|++|++++|.+.+++.  |..+++|++|++++|+++.++.. +..+++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccc
Confidence            344445556666666666666665443 45666666666666665543  45666666666666666655543 245666


Q ss_pred             CcEEEccCCCCCCC--CcccCCCCCCCEEEeeCCCCCcccc----cccCCCCCCEEE
Q 006185           88 LRTLRLDYCNHLPD--LSLIGELSGLEILDLSKSDVNEIPV----SFGRLSHLRLLD  138 (657)
Q Consensus        88 L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~  138 (657)
                      |++|++++|.....  ...+..+++|++|++++|.++..|.    .+..+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666652221  2345556666666666666655543    355566666664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=8.6e-14  Score=125.55  Aligned_cols=133  Identities=20%  Similarity=0.245  Sum_probs=110.5

Q ss_pred             CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCC
Q 006185           11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNL   88 (657)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L   88 (657)
                      |+.+.+ ..++++.+++.+++||+.+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ +..+..+++|
T Consensus         3 P~~C~C-~~~~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_           3 PAMCHC-EGTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             CTTSEE-ETTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCEE-cCCEEEEeCCCcCccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc
Confidence            333444 34689999999999998663 68999999999997 47777789999999999999999765 5678899999


Q ss_pred             cEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCC
Q 006185           89 RTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNL  145 (657)
Q Consensus        89 ~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~  145 (657)
                      ++|++++|..... +..|.++++|++|++++|.++.+|.. +..+++|++|+++++...
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            9999999985544 46789999999999999999988765 789999999999995433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.6e-13  Score=113.21  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=98.4

Q ss_pred             cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCC
Q 006185           20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHL   99 (657)
Q Consensus        20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~   99 (657)
                      |+|++++|.++.++....+++|++|++++|.+.++|+. |+.+++|++|++++|.++.+| .+.++++|++|++++|...
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            78999999999998755899999999999999999876 689999999999999999887 4899999999999999844


Q ss_pred             CC--CcccCCCCCCCEEEeeCCCCCccc---cc-ccCCCCCCEE
Q 006185          100 PD--LSLIGELSGLEILDLSKSDVNEIP---VS-FGRLSHLRLL  137 (657)
Q Consensus       100 ~~--~~~~~~l~~L~~L~l~~~~i~~lp---~~-i~~l~~L~~L  137 (657)
                      ..  +..++++++|++|++++|.++..+   .. +..+++|+.|
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            33  357889999999999999887543   22 3446777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.3e-13  Score=126.93  Aligned_cols=200  Identities=17%  Similarity=0.182  Sum_probs=147.7

Q ss_pred             CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCC-cCCC-C
Q 006185            4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGI-RMVS-P   78 (657)
Q Consensus         4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~-~~~~-l   78 (657)
                      +.+++++|+ .-.++++.|++++|.++.++...  ++++|++|++++|.+. .++...|.+++.++++.+..+ ++.. .
T Consensus        17 ~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~   95 (242)
T d1xwdc1          17 ESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   95 (242)
T ss_dssp             SCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC
T ss_pred             CCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc
Confidence            346788884 22368999999999999998764  8999999999999887 467777899999999998764 5654 4


Q ss_pred             CccccCCCCCcEEEccCCCCCCCC--cccCCCCCCCEEEeeCCCCCccccc-ccCC-CCCCEEEccCCCCCCCCchhHhh
Q 006185           79 PSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPVS-FGRL-SHLRLLDLTDCYNLELIPPGVLS  154 (657)
Q Consensus        79 p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l-~~L~~L~l~~c~~~~~~~~~~~~  154 (657)
                      +..|.++++|++|+++++.....+  ..+..+..+..+...++.+..++.. +..+ ..++.|++.+ +.++.++.. ..
T Consensus        96 ~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~-~~  173 (242)
T d1xwdc1          96 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNC-AF  173 (242)
T ss_dssp             TTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-TT
T ss_pred             cccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccc-cc
Confidence            567899999999999999833332  3445566677777777778876543 5555 4788999988 567777776 45


Q ss_pred             cCccCcEEE-cccCccccccccccccccccc-hhhhcCCCCccEEEeecCCCccCCCCCCCCCccEE
Q 006185          155 RLRKLEELY-MSHSFCHWQFESEEDTRSNAK-FIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSF  219 (657)
Q Consensus       155 ~l~~L~~L~-l~~~~~~~~~~g~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  219 (657)
                      +..+++++. +.++.+.            .. ...+.++++|+.|++++|++..++.. .+.+|..|
T Consensus       174 ~~~~l~~~~~l~~n~l~------------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L  227 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLE------------ELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKL  227 (242)
T ss_dssp             TTCCEEEEECTTCTTCC------------CCCTTTTTTSCCCSEEECTTSCCCCCCSS-SCTTCCEE
T ss_pred             cchhhhccccccccccc------------cccHHHhcCCCCCCEEECCCCcCCccCHH-HHcCCccc
Confidence            666766665 4555443            22 23478899999999999999888765 24444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=2.1e-12  Score=116.26  Aligned_cols=125  Identities=20%  Similarity=0.192  Sum_probs=101.9

Q ss_pred             CcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-C-CccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEee
Q 006185           41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-P-PSSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLS  117 (657)
Q Consensus        41 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-l-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~  117 (657)
                      .++++.+++.+..+|..+   .+++++|+|++|+++. + +..|.++++|++|++++|..... +..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            467888888888898865   3688999999999864 4 45678899999999998885544 4778889999999999


Q ss_pred             CCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185          118 KSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC  169 (657)
Q Consensus       118 ~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~  169 (657)
                      +|.++.+|.. |.++++|++|++++ +.++.++.+++..+++|++|++++|.+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccccc
Confidence            9999887654 78899999999999 567888877778888899998888754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=5.9e-14  Score=126.71  Aligned_cols=103  Identities=23%  Similarity=0.310  Sum_probs=63.1

Q ss_pred             CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185           37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL  116 (657)
Q Consensus        37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  116 (657)
                      .+++|++|++++|.+..++.  |.++++|++|++++|.++++|..+..+.+|++|++++|. ++.+..+.++++|++|++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~L  122 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSSEEEE
T ss_pred             cccccceeECcccCCCCccc--ccCCccccChhhccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            56666666666666666543  566666666666666666666554555566666666665 444445566666666666


Q ss_pred             eCCCCCcccc--cccCCCCCCEEEccCC
Q 006185          117 SKSDVNEIPV--SFGRLSHLRLLDLTDC  142 (657)
Q Consensus       117 ~~~~i~~lp~--~i~~l~~L~~L~l~~c  142 (657)
                      ++|.++.++.  .+..+++|++|++++|
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccchhccccccccccCCCccceeecCCC
Confidence            6666665542  3566666666666663

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-12  Score=135.54  Aligned_cols=384  Identities=17%  Similarity=0.099  Sum_probs=206.5

Q ss_pred             CCccEEEccCCCccc--cCCCC-CCCCCcEEEecCCcCcCCC----chhhcCCCCccEEEecCCcCCC-----CCcccc-
Q 006185           17 EDLTGISLMFNDIHE--VPDGL-ECPKLQALFLQKNHLLVIP----DPFFQGMKDLKVLDLGGIRMVS-----PPSSLS-   83 (657)
Q Consensus        17 ~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~~~~-----lp~~~~-   83 (657)
                      .+|+.|+++++.+++  +.+.. .++++++|++++|.+++..    ...+..+++|++|+|++|.++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            368899999999874  33333 6889999999999876211    2235789999999999998742     233333 


Q ss_pred             CCCCCcEEEccCCCCCCC------CcccCCCCCCCEEEeeCCCCCc-----cccccc-CCCCCCEEEccCCCCCCCCc--
Q 006185           84 FLSNLRTLRLDYCNHLPD------LSLIGELSGLEILDLSKSDVNE-----IPVSFG-RLSHLRLLDLTDCYNLELIP--  149 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~-~l~~L~~L~l~~c~~~~~~~--  149 (657)
                      ...+|++|++++|. +++      +..+..+++|++|++++|.++.     ++..+. .............. .....  
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~  159 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE  159 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccc-cchhhhc
Confidence            34579999999998 443      2567889999999999998763     222222 22223344443321 11111  


Q ss_pred             --hhHhhcCccCcEEEcccCccccccccccccccccchhhhc-CCCCccEEEeecCCCccCCC------CCCCCCccEEE
Q 006185          150 --PGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG-ALSRLTSLHIDIPKGEIMPS------DMSLPNLTSFS  220 (657)
Q Consensus       150 --~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~  220 (657)
                        ...+.....++.++++++.......       ......+. .......+.+..+.......      ......++.+.
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  232 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA  232 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccc-------cccccccccccccccccccccccccchhhhcccccccccccccccc
Confidence              1113456778888887664321000       01111121 22345556665554321110      02345667777


Q ss_pred             EEEcCccChhhHHHHHhhcc-cccCcceEEeecccchhh----hHHHHHHHHccccEEEEeeccccccc-cccc---ccc
Q 006185          221 ITIGEEDTLNDFIELFLENF-NKRCSRAMGLSQDMRISA----LHSWIKNLLLRSEILALIEVNDLENI-FSNL---AND  291 (657)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~----l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~l---~~~  291 (657)
                      +..+.... ........... ....++.+++.++.....    ...++.. .+.++.++++++. +.+. ...+   ...
T Consensus       233 ~~~n~~~~-~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~-~~~l~~l~l~~n~-i~~~~~~~l~~~l~~  309 (460)
T d1z7xw1         233 LGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNE-LGDEGARLLCETLLE  309 (460)
T ss_dssp             CCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCC-CHHHHHHHHHHHHTS
T ss_pred             hhhccccc-cccchhhcccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccchhhccccc
Confidence            65442111 11111111111 235677777777632221    2222222 2678888887663 2211 1110   011


Q ss_pred             ccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCC---CCCCCccEEEEecCCCcccccc
Q 006185          292 DFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPA---GCLSNVKRLDVVGCGSMLKILP  368 (657)
Q Consensus       292 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~p  368 (657)
                      ....|+.+.++++. +...............++|++|+++++. +.+-....++.   ...+.|++|++++| .+++...
T Consensus       310 ~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~  386 (460)
T d1z7xw1         310 PGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSC  386 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred             cccccccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC-CCChHHH
Confidence            24578899998883 3211000000022345689999999874 43211011111   13567999999998 5665322


Q ss_pred             hhH---HHhcccCcEEEEcccccceeeeecccccccccccc-cCCcccEEecCCCc
Q 006185          369 SHL---VQSFQNLQRLMVESCELLVSVFEIERVNIAKEETE-LFSSLEKLTLIDLP  420 (657)
Q Consensus       369 ~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~c~  420 (657)
                      ..+   ...+++|++|++++. .+..    .+.....+.+. .-..|+.|.+.++.
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N-~i~~----~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNN-CLGD----AGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSS-SCCH----HHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHHhcCCCCCEEECCCC-cCCH----HHHHHHHHHHHhCCCccCEEECCCCC
Confidence            222   346799999999984 3322    11111112222 23479999999865

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=2.6e-13  Score=122.43  Aligned_cols=111  Identities=20%  Similarity=0.139  Sum_probs=93.8

Q ss_pred             CCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL   91 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L   91 (657)
                      +++.+++|++|++++|.|+.++....+++|++|++++|.+.+++.. +..+++|++|++++|+++.++ .+.++++|++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCHH-HHHHHHHSSEE
T ss_pred             HHhcccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccccccccc-ccccccccccc
Confidence            3667899999999999999997544899999999999999888763 456778999999999998874 58889999999


Q ss_pred             EccCCCCCCCC--cccCCCCCCCEEEeeCCCCCcc
Q 006185           92 RLDYCNHLPDL--SLIGELSGLEILDLSKSDVNEI  124 (657)
Q Consensus        92 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l  124 (657)
                      ++++|.....+  ..++.+++|++|++++|.+...
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccC
Confidence            99999833323  5689999999999999977643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.7e-10  Score=96.89  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             CCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCC-cCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCC
Q 006185           12 SINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKN-HLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNL   88 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L   88 (657)
                      ..+.+.....++.+++.+.++|..+ .+++|++|+++++ .+..++...|.++++|++|++++|+++.++ ..|..+++|
T Consensus         3 ~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           3 DACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             SSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             CCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccc
Confidence            3444555566777777776666655 6677777777655 366676666777777777777777776653 446666666


Q ss_pred             cEEEccCCCCCCCCcccCCCCCCCEEEeeCCCC
Q 006185           89 RTLRLDYCNHLPDLSLIGELSGLEILDLSKSDV  121 (657)
Q Consensus        89 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i  121 (657)
                      ++|+|++|...+.|..+....+|++|++++|.+
T Consensus        83 ~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          83 SRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cceeccCCCCcccChhhhccccccccccCCCcc
Confidence            666666666444443333333455555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5e-12  Score=130.99  Aligned_cols=366  Identities=16%  Similarity=0.095  Sum_probs=187.6

Q ss_pred             CCcEEEecCCcCcCCC-chhhcCCCCccEEEecCCcCC-----CCCccccCCCCCcEEEccCCCCCCCC------cccC-
Q 006185           40 KLQALFLQKNHLLVIP-DPFFQGMKDLKVLDLGGIRMV-----SPPSSLSFLSNLRTLRLDYCNHLPDL------SLIG-  106 (657)
Q Consensus        40 ~L~~L~l~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~------~~~~-  106 (657)
                      +|++|+++++++++.. ..++..++++|+|+|++|+++     .+...+..+++|++|++++|. +++.      ..+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhc
Confidence            6889999999987321 334678899999999999886     345667889999999999987 4321      2222 


Q ss_pred             CCCCCCEEEeeCCCCCc-----ccccccCCCCCCEEEccCCCCCCCCchhHhh-----cCccCcEEEcccCccccccccc
Q 006185          107 ELSGLEILDLSKSDVNE-----IPVSFGRLSHLRLLDLTDCYNLELIPPGVLS-----RLRKLEELYMSHSFCHWQFESE  176 (657)
Q Consensus       107 ~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~g~  176 (657)
                      ...+|++|++++|.++.     ++..+..+++|++|++++|. ++..+...+.     .................     
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-----  155 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA-----  155 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-----
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccch-----
Confidence            23579999999998873     45667888899999998853 4332211111     11222333332222111     


Q ss_pred             cccccccchhhhcCCCCccEEEeecCCCccC-----CCC--CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEE
Q 006185          177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIM-----PSD--MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMG  249 (657)
Q Consensus       177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  249 (657)
                        .........+.....++.+.++++.....     ...  ........+.+..+....                     
T Consensus       156 --~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~---------------------  212 (460)
T d1z7xw1         156 --ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS---------------------  212 (460)
T ss_dssp             --GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT---------------------
T ss_pred             --hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------------
Confidence              01112334445556667776665443110     000  001122233222211000                     


Q ss_pred             eecccchhhhHHHHHHHHccccEEEEeecccccc----ccccccccccccceEEEeecCCCceEEeeccccccccccccc
Q 006185          250 LSQDMRISALHSWIKNLLLRSEILALIEVNDLEN----IFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKL  325 (657)
Q Consensus       250 l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~----~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  325 (657)
                          ..+......... ...++.+.+.++.....    .... .....+.++.+++++|. +...............+.+
T Consensus       213 ----~~~~~~~~~l~~-~~~~~~l~~~~n~~~~~~~~~~~~~-~~~~~~~l~~l~l~~n~-i~~~~~~~~~~~l~~~~~l  285 (460)
T d1z7xw1         213 ----DNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELCPG-LLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESL  285 (460)
T ss_dssp             ----THHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHH-HTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTC
T ss_pred             ----hhhhcccccccc-cccccccchhhccccccccchhhcc-ccccccccccccccccc-ccccccccccccccccccc
Confidence                000111111111 25566666655422111    1111 11234667777777772 2211100000022346677


Q ss_pred             cEEeccccccccccccccC---CCCCCCCccEEEEecCCCcccccchh---HHHhcccCcEEEEcccccceeeeeccccc
Q 006185          326 EWLFIRENQNFVEICHGQL---PAGCLSNVKRLDVVGCGSMLKILPSH---LVQSFQNLQRLMVESCELLVSVFEIERVN  399 (657)
Q Consensus       326 ~~L~l~~~~~l~~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~p~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  399 (657)
                      +.+++++++ +.+.....+   .....+.|+.+.+++|. +.......   .....++|++|+++++. +..    .+..
T Consensus       286 ~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~----~g~~  358 (460)
T d1z7xw1         286 KELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LED----AGVR  358 (460)
T ss_dssp             CEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHH----HHHH
T ss_pred             ccccccccc-ccccccchhhccccccccccccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccC----cccc
Confidence            777777664 211000000   01134678899998874 43322222   22456789999998853 321    1110


Q ss_pred             cccccc-ccCCcccEEecCCCcCcccccCC--CCcccccCCccEEEeccCccccc
Q 006185          400 IAKEET-ELFSSLEKLTLIDLPRMTDIWKG--DTQFVSLHNLKKVRVEECDELRQ  451 (657)
Q Consensus       400 ~~~~~~-~~~~~L~~L~l~~c~~L~~l~~~--~~~~~~~~~L~~L~i~~C~~L~~  451 (657)
                      ...+.+ ...+.|++|++++| .+++....  ......+++|++|++++. .+++
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~  411 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGD  411 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCH
T ss_pred             hhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC-cCCH
Confidence            112222 24567999999998 46542100  111224689999999986 5554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.90  E-value=8.4e-10  Score=109.06  Aligned_cols=181  Identities=15%  Similarity=0.058  Sum_probs=81.8

Q ss_pred             CCCCCccEEEccCCCcc-----ccCCCC-CCCCCcEEEecCCcCcCC----Cc------hhhcCCCCccEEEecCCcCCC
Q 006185           14 NTFEDLTGISLMFNDIH-----EVPDGL-ECPKLQALFLQKNHLLVI----PD------PFFQGMKDLKVLDLGGIRMVS   77 (657)
Q Consensus        14 ~~~~~L~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~----~~------~~~~~l~~Lr~L~L~~~~~~~   77 (657)
                      .....++.|++++|.++     .+.... ..++|+.++++++.....    +.      ..+...++|++|++++|.++.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            33555666666666553     122222 455666666655433211    10      113445566666666665532


Q ss_pred             -----CCccccCCCCCcEEEccCCCCCCCC---------------cccCCCCCCCEEEeeCCCCC-----cccccccCCC
Q 006185           78 -----PPSSLSFLSNLRTLRLDYCNHLPDL---------------SLIGELSGLEILDLSKSDVN-----EIPVSFGRLS  132 (657)
Q Consensus        78 -----lp~~~~~l~~L~~L~l~~~~~~~~~---------------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~  132 (657)
                           +...+..+++|++|++++|. +...               ......+.|+.++++++.++     .+...+...+
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             ccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence                 23334445566666666554 2110               00123445556666555544     1222344455


Q ss_pred             CCCEEEccCCCCCCCC-----chhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCC
Q 006185          133 HLRLLDLTDCYNLELI-----PPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK  203 (657)
Q Consensus       133 ~L~~L~l~~c~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~  203 (657)
                      +|++|++++|. ++..     ....+..+++|++|++++|.+...       ........+..+++|++|++++|.
T Consensus       187 ~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~-------g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         187 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhccccccccc-ccccccccchhhhhcchhhhccccccccccccc-------ccccccccccccccchhhhhhcCc
Confidence            55566555532 2210     011133455555555555543210       011233344455555555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.7e-09  Score=91.36  Aligned_cols=94  Identities=17%  Similarity=0.022  Sum_probs=81.7

Q ss_pred             CCCCCCCC-CCCCCCCccEEEccCC-CccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC
Q 006185            4 GVELKDWP-SINTFEDLTGISLMFN-DIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP   79 (657)
Q Consensus         4 ~~~l~~~~-~~~~~~~L~~L~l~~~-~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp   79 (657)
                      ++++.++| .+..+++++.|++.++ .++.++...  ++++|++|++++|.+..+++..|..+++|++|+|++|+++.+|
T Consensus        17 ~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~   96 (156)
T d2ifga3          17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (156)
T ss_dssp             SSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccC
Confidence            34555665 5778899999999876 599888654  8999999999999999999888999999999999999999999


Q ss_pred             ccccCCCCCcEEEccCCC
Q 006185           80 SSLSFLSNLRTLRLDYCN   97 (657)
Q Consensus        80 ~~~~~l~~L~~L~l~~~~   97 (657)
                      .......+|++|++++|.
T Consensus        97 ~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          97 WKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             STTTCSCCCCEEECCSSC
T ss_pred             hhhhccccccccccCCCc
Confidence            876666689999999998

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=1.8e-09  Score=106.65  Aligned_cols=205  Identities=17%  Similarity=0.152  Sum_probs=140.2

Q ss_pred             CCCCCCCccEEEccCCCccccC-----------CCC-CCCCCcEEEecCCcCcCCC----chhhcCCCCccEEEecCCcC
Q 006185           12 SINTFEDLTGISLMFNDIHEVP-----------DGL-ECPKLQALFLQKNHLLVIP----DPFFQGMKDLKVLDLGGIRM   75 (657)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~l~-----------~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~~   75 (657)
                      .+...+.++.++++++......           ..+ .+++|++|++++|.+....    ..++...++|++|++++|.+
T Consensus        54 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          54 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            3667899999999887654322           112 6789999999999876321    12346789999999999976


Q ss_pred             CC-----CCc---------cccCCCCCcEEEccCCCCCCCC------cccCCCCCCCEEEeeCCCCCc------cccccc
Q 006185           76 VS-----PPS---------SLSFLSNLRTLRLDYCNHLPDL------SLIGELSGLEILDLSKSDVNE------IPVSFG  129 (657)
Q Consensus        76 ~~-----lp~---------~~~~l~~L~~L~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~i~~------lp~~i~  129 (657)
                      ..     +..         .......|++++++++. ++..      ..+....+|++|++++|.++.      +...+.
T Consensus       134 ~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~  212 (344)
T d2ca6a1         134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  212 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             cccccccccccccccccccccccCcccceeeccccc-ccccccccccchhhhhhhhcccccccccccccccccchhhhhc
Confidence            31     111         11356789999999887 4321      345678899999999998873      344577


Q ss_pred             CCCCCCEEEccCCCCCCC-----CchhHhhcCccCcEEEcccCccccccccccccccccchhhhcC--CCCccEEEeecC
Q 006185          130 RLSHLRLLDLTDCYNLEL-----IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGA--LSRLTSLHIDIP  202 (657)
Q Consensus       130 ~l~~L~~L~l~~c~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~--l~~L~~L~l~~~  202 (657)
                      .+++|++|++++|. ++.     +.. .+..+++|++|++++|.+....       .......+..  ...|++|++++|
T Consensus       213 ~~~~L~~L~Ls~N~-i~~~g~~~L~~-~l~~~~~L~~L~Ls~n~i~~~g-------~~~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         213 YCQELKVLDLQDNT-FTHLGSSALAI-ALKSWPNLRELGLNDCLLSARG-------AAAVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             GCTTCCEEECCSSC-CHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHH-------HHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             chhhhccccccccc-ccccccccccc-cccccccchhhhhhcCccCchh-------hHHHHHHhhhccCCCCCEEECCCC
Confidence            88999999999854 332     222 2678899999999999764311       1133344443  367999999999


Q ss_pred             CCcc-----CCCC--CCCCCccEEEEEEcCc
Q 006185          203 KGEI-----MPSD--MSLPNLTSFSITIGEE  226 (657)
Q Consensus       203 ~~~~-----~~~~--~~l~~L~~L~l~~~~~  226 (657)
                      .++.     +...  ...++|+.|++.++..
T Consensus       284 ~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            8633     1111  2467899999987643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.1e-07  Score=79.93  Aligned_cols=82  Identities=22%  Similarity=0.125  Sum_probs=57.7

Q ss_pred             chhhcCCCCccEEEecCCcCCCCC---ccccCCCCCcEEEccCCCCCCCCcc--cCCCCCCCEEEeeCCCCCccc-----
Q 006185           56 DPFFQGMKDLKVLDLGGIRMVSPP---SSLSFLSNLRTLRLDYCNHLPDLSL--IGELSGLEILDLSKSDVNEIP-----  125 (657)
Q Consensus        56 ~~~~~~l~~Lr~L~L~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~lp-----  125 (657)
                      ..++.++++|++|++++|+++.++   ..+..+++|++|++++|. ++....  ..+..+|+.|++++|.+....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            344567888888999988887653   446678889999999888 444322  223456888889988876432     


Q ss_pred             ---ccccCCCCCCEEE
Q 006185          126 ---VSFGRLSHLRLLD  138 (657)
Q Consensus       126 ---~~i~~l~~L~~L~  138 (657)
                         ..+..+++|++||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               1256788898885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=9.8e-06  Score=69.08  Aligned_cols=103  Identities=20%  Similarity=0.129  Sum_probs=72.2

Q ss_pred             CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCc--hhhcCCCCccEEEecCCcCCCCCc-cccCCCCC
Q 006185           13 INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPD--PFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNL   88 (657)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L   88 (657)
                      +..+..+..++...+....++... .+++|++|++++|.+..+++  ..+..+++|++|++++|.++++++ ......+|
T Consensus        38 l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L  117 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL  117 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCC
T ss_pred             hhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcccc
Confidence            333344444444433333343333 68999999999999997653  446789999999999999998775 23345579


Q ss_pred             cEEEccCCCCCCCC--------cccCCCCCCCEEE
Q 006185           89 RTLRLDYCNHLPDL--------SLIGELSGLEILD  115 (657)
Q Consensus        89 ~~L~l~~~~~~~~~--------~~~~~l~~L~~L~  115 (657)
                      +.|++++|......        ..+..+++|++||
T Consensus       118 ~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         118 EELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            99999999843322        2367899999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.97  E-value=0.00023  Score=60.61  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=26.4

Q ss_pred             CCCCCEEEeeCCCCC-----cccccccCCCCCCEEEccCCCCCCC--------CchhHhhcCccCcEEEcccC
Q 006185          108 LSGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTDCYNLEL--------IPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus       108 l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~~~~--------~~~~~~~~l~~L~~L~l~~~  167 (657)
                      .+.|++|++++|.++     .+-..+...+.|++|+++++. ...        +.. ++..-+.|++|+++.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~-~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMM-AIEENESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHH-HHHHCSSCCEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHH-HHHhCCCccEeeCcCC
Confidence            344555555555444     122334445555555555431 111        111 1344566666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=0.00031  Score=59.73  Aligned_cols=83  Identities=10%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             CCCCCcEEEccCCCCCCCC------cccCCCCCCCEEEeeCCCCC-----cccccccCCCCCCEEEccCCCCCCCCc-hh
Q 006185           84 FLSNLRTLRLDYCNHLPDL------SLIGELSGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTDCYNLELIP-PG  151 (657)
Q Consensus        84 ~l~~L~~L~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~~~~~~-~~  151 (657)
                      +.++|++|+|+++..++..      ..+...++|++|++++|.++     .+.+.+...+.|++|++++|. ++.-. ..
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            3455666666554323221      23445566666666666554     223334455666777776643 32211 10


Q ss_pred             ---HhhcCccCcEEEcccC
Q 006185          152 ---VLSRLRKLEELYMSHS  167 (657)
Q Consensus       152 ---~~~~l~~L~~L~l~~~  167 (657)
                         ++...+.|++|+++++
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence               1334455666666555

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.71  E-value=0.00053  Score=58.16  Aligned_cols=18  Identities=11%  Similarity=-0.071  Sum_probs=8.9

Q ss_pred             chhhhcCCCCccEEEeec
Q 006185          184 KFIELGALSRLTSLHIDI  201 (657)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~  201 (657)
                      ....+...+.|+.|++.+
T Consensus       124 La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCCCcCEEeCcC
Confidence            334444555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.37  E-value=0.0012  Score=55.96  Aligned_cols=84  Identities=12%  Similarity=0.098  Sum_probs=41.9

Q ss_pred             ccCCCCCcEEEccCCCCCCCC------cccCCCCCCCEEEeeCCCCC-----cccccccCCCCCCEEEccCCC-CCCC--
Q 006185           82 LSFLSNLRTLRLDYCNHLPDL------SLIGELSGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTDCY-NLEL--  147 (657)
Q Consensus        82 ~~~l~~L~~L~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~-~~~~--  147 (657)
                      +...++|++|++++|. ++..      ..+....+++.++++++.++     .+.+.+...++|+.+++..+. .++.  
T Consensus        42 l~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            3344455555555544 2211      23334455666666655544     233455566667766655432 2222  


Q ss_pred             ---CchhHhhcCccCcEEEcccC
Q 006185          148 ---IPPGVLSRLRKLEELYMSHS  167 (657)
Q Consensus       148 ---~~~~~~~~l~~L~~L~l~~~  167 (657)
                         +.. ++.+.+.|++|+++.+
T Consensus       121 ~~~La~-~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         121 EMEIAN-MLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHH-HHHHCSSCCEEECCCS
T ss_pred             HHHHHH-HHHhCCCcCEEeCcCC
Confidence               222 2456677777777654