Citrus Sinensis ID: 006200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
Protein Sequence
MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEEED
Secondary Structure (PSIPRED)
cccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHEEEcccccccccHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccHccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHcccccccccccc
Coil and Loop (DISEMBL)
MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVrgseadpgkdahkltnKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIiaahpknrdvlaskvlgeepqVEAALNSILRIILRTSSMQEFLAADRIFNSfceknpdgqamltstlipqpqsmshapleedvnMSFGSMLIRGltlgesdgdlEVCCRAASVLSHILMDNLQCKERVLRIEleapmpslgaaePLMHRMVRYLALASsmktkdgtgkaGYIQLIILKLLVTWLAdcpnavhcfldsrpHLTYLLElvsnpsatvcTRGLAAVLLGECVIynkssdtgrdaFSIVDSISQKVGLTSYFLKFDEMQKSflfssakptqalkpltrstaasmaeiediddsdlsdkenedhpllssMFDKHFVDIIKSLESSIRENIVdvysrpksevavvpaeleqrngesdKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKiggdgasqseqrasGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALksggssvsspdvEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGigddmglpeddeeeed
Flexible Loop (DISEMBL)
MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRgseadpgkdahkltnkTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLfssakptqalkPLTRSTAASmaeiediddsdlsDKENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVysrpksevavvpaeleqrngesdkdYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIggdgasqseqrasGALDRVQVETLRKDLHEASQRLEilkeekaqiesdsSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAlksggssvsspdVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEgigddmglpeddeeeed
Low Complexity Region (SEG)
MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAeiediddsdlsdKENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEEED
Disordered region (IsUnstruct)
****PLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGS********HKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCE*******************************SFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLF********************************************MFDKHFVDIIKSLESSIRENIVDVYS***********************YVKRLKAFVEKQCSEIQKLLGRNATL******************************************************************************************************************************DLLVCLG***********RLLEL**************************
Disordered Region (DISOPRED)
***DPLIS**KL******FTQQKTINLLSALETINLLIVRGS***********TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTL*******************FGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKER**********************MVRYLA**************GYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYN***********************SYFLKF*****************************************************MFDKHFVDIIKS**********************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG**************LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVK******************************AELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGL*********
Disordered Region (DISPRO)
*GFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQ*******P****VNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKP**************MAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQ****ALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIG**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSMYRNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKALKSGGSSVSSPDxxxxxxxxxxxxxxxxxxxxxDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEEED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	657	2.2.26 [Sep-21-2011]
B0F9L4	914	Golgin candidate 6 OS=Ara	yes	no	0.980	0.704	0.685	0.0
O60763	962	General vesicular transpo	yes	no	0.788	0.538	0.232	3e-16
P41541	961	General vesicular transpo	yes	no	0.788	0.539	0.224	6e-14
Q9Z1Z0	959	General vesicular transpo	yes	no	0.757	0.519	0.223	1e-13
P41542	959	General vesicular transpo	yes	no	0.757	0.519	0.227	2e-13

>sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/648 (68%), Positives = 540/648 (83%), Gaps = 4/648 (0%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           MGF+P+ISILKLRG  Y FTQQKT+NLLSALETIN+LI+  ++ +PGKD++KL N+TVLV
Sbjct: 256 MGFEPIISILKLRGITYKFTQQKTVNLLSALETINMLIMGRADTEPGKDSNKLANRTVLV 315

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD LLML VESQWAPVAVRC   +CI D+I  HPKNRD+LASKVLGE+ QVE ALN
Sbjct: 316 QKKLLDYLLMLGVESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALN 375

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIIL+TSS+QEF+AAD +F +FCEKN +GQ ML STLIPQP   S   LE+DV+MSF
Sbjct: 376 SILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTMLASTLIPQPHPTSRDHLEDDVHMSF 435

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+RGL  GE+DGDLE CCRAAS+LSH++ DNL+CKE+ L+I LE+PMPS+G  EPL 
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLF 495

Query: 241 HRMVRYLALASSMKTKDGTGKAG--YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL 298
            R+VRYLA+ASSMK+K+ +   G  YIQ IILKLLVTW  DCP AV CFLDSR HLT+LL
Sbjct: 496 QRIVRYLAVASSMKSKEKSSTLGKSYIQQIILKLLVTWTVDCPTAVQCFLDSRHHLTFLL 555

Query: 299 ELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQ 358
           ELV++P+ATVC RGLA++LLGECVIYNKS + G+DAFS+VD++ QK+GLTSYF KF+EMQ
Sbjct: 556 ELVTDPAATVCIRGLASILLGECVIYNKSIENGKDAFSVVDAVGQKMGLTSYFSKFEEMQ 615

Query: 359 KSFLFS-SAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
            SF+FS S KP Q  KPLTR+   S AEI ++D+ D   K NEDHP+L S+FD  F+ ++
Sbjct: 616 NSFIFSPSKKPPQGYKPLTRTPTPSEAEINEVDEVDEMVKGNEDHPMLLSLFDASFIGLV 675

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           KSLE +IRE IVDVYSRPKSEVAVVPA+LEQ++GE++KDY+ RLKAF+EKQCSEIQ LL 
Sbjct: 676 KSLEGNIRERIVDVYSRPKSEVAVVPADLEQKSGENEKDYINRLKAFIEKQCSEIQNLLA 735

Query: 478 RNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536
           RNA LAE++A  G +  SQ SEQRAS  +D+VQ+E++R++L E SQRLE +K EKA+IES
Sbjct: 736 RNAALAEDVASSGRNEQSQGSEQRASTVMDKVQMESIRRELQETSQRLETVKAEKAKIES 795

Query: 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAR 596
           ++S  +N+AAK+E DLKSLSDAYNSLEQ N+HLE+EVK+LK G S +  PD+EAIK E R
Sbjct: 796 EASSNKNMAAKLEFDLKSLSDAYNSLEQANYHLEQEVKSLKGGESPMQFPDIEAIKEEVR 855

Query: 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGD 644
           +EAQKESE ELNDLLVCLGQE+SKVEKLSA+L+ELG DV+KLLE IGD
Sbjct: 856 KEAQKESEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLEDIGD 903

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|O60763|USO1_HUMAN General vesicular transport factor p115 OS=Homo sapiens GN=USO1 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 143/615 (23%), Positives = 250/615 (40%), Gaps = 97/615 (15%)

Query: 19  FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
           ++ QK  NL   L+ + +L+   +         K   +  L+Q+  L  +LM    +   
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 325

Query: 79  PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFL-- 136
           P  +    +  +S++I     N+D  AS      P   A +  ++ ++   +  Q F+  
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMV---NERQPFVLR 382

Query: 137 -AADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESD 194
            A    F  F  KN  GQ  + STL+P       + ++   N +S G +L  GL    S 
Sbjct: 383 CAVLYCFQCFLYKNQKGQGEIVSTLLP-------STIDATGNSVSAGQLLCGGLF---ST 432

Query: 195 GDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMK 254
             L   C AA  L+H L +N   KE++LR++L   + +   +  L+ +    L+  S ++
Sbjct: 433 DSLSNWC-AAVALAHALQENATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQ 489

Query: 255 TKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRG 312
           T+ G          +L LL TWL++CP AV  FL +  ++ +L   ++          +G
Sbjct: 490 TRVG----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQG 539

Query: 313 LAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQAL 372
           L A+LLG  + +N +S        +   I +++G  ++  K   + K  L+S A      
Sbjct: 540 LCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRA------ 593

Query: 373 KPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI------- 424
                                 S K   + P    M FD  F  ++K LE  I       
Sbjct: 594 ----------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKS 631

Query: 425 ----------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQ 468
                            +NIV  Y     E  +   EL Q+   + K   ++L+  V +Q
Sbjct: 632 SEEDKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELRQQVS-TLKCQNEQLQTAVTQQ 690

Query: 469 CSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILK 528
            S+IQ+   +   L  +L K      S SE      +   ++  LR+++ E  +  E+L 
Sbjct: 691 VSQIQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELL- 749

Query: 529 EEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTN--FHLEKEVKALKSGGSSVSSP 586
             ++Q+    SM  N+ +   S     S A  S   +     L++E+  LKS  +S  S 
Sbjct: 750 --QSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNS-QSV 806

Query: 587 DVEAIKAEAREEAQK 601
           ++  ++ E +E  QK
Sbjct: 807 EITKLQTEKQELLQK 821

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.

Homo sapiens (taxid: 9606)

>sp|P41541|USO1_BOVIN General vesicular transport factor p115 OS=Bos taurus GN=USO1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 138/614 (22%), Positives = 248/614 (40%), Gaps = 96/614 (15%)

Query: 19  FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
           ++ QK  NL   L+ + +L+   +         K   +  L+Q+  L  +LM    +   
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 325

Query: 79  PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
           P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385

Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
              F  F  KN  GQ  + STL+P       + ++   N +S G +L  GL    S   L
Sbjct: 386 LYCFQCFLYKNQKGQGEIVSTLLP-------STIDATGNTVSAGQLLCGGLF---STDSL 435

Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKD 257
              C AA  L+H L +N   KE++LR++L   + +   +  L+ +    L+  S ++T+ 
Sbjct: 436 SNWC-AAVALAHALQENATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQTRV 492

Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRGLAA 315
           G          +L LL TWL++CP AV  FL +  ++ +L   ++          +GL A
Sbjct: 493 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 542

Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
           +LLG  + +N +S        +   I +++G  ++  K   + K  L+S A         
Sbjct: 543 LLLGISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRA--------- 593

Query: 376 TRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI---------- 424
                              S K   + P    M FD  F  ++K LE  I          
Sbjct: 594 -------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEE 634

Query: 425 -------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
                         ++IV  Y     E  +   EL+Q+   + K   ++L+  V +Q S+
Sbjct: 635 DKKEEEVKKTLEQHDSIVTHYKNMIREQDLQLEELKQQIS-TLKCQNEQLQTAVTQQVSQ 693

Query: 472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQ---VETLRKDLHEASQRLEILK 528
           IQ+   +   L     ++G D   Q        ++ VQ   +  LR+++ E     E+L 
Sbjct: 694 IQQHKDQYNLLK---VQLGKDSQHQGPYTDGAQMNGVQPEEISRLREEIEELKSNRELL- 749

Query: 529 EEKAQIESDSSMYRNL-AAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPD 587
             ++Q+    S+  NL ++++       S A     +    L++E+  LKS  +S  S +
Sbjct: 750 --QSQLAEKDSLIENLKSSQLSPGTNEQSSATAGDSEQIAELKQELATLKSQLNS-QSVE 806

Query: 588 VEAIKAEAREEAQK 601
           +  ++ E +E  QK
Sbjct: 807 ITKLQTEKQELLQK 820

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.

Bos taurus (taxid: 9913)

>sp|Q9Z1Z0|USO1_MOUSE General vesicular transport factor p115 OS=Mus musculus GN=Uso1 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 132/590 (22%), Positives = 233/590 (39%), Gaps = 92/590 (15%)

Query: 19  FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
           ++ QK  NL   L+ + +L+   +         K   +  L+Q+  L  +LM    +   
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGI 325

Query: 79  PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
           P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385

Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
              F  F  KN  GQ  + +TL+P       + ++   N +S G +L  GL    S   L
Sbjct: 386 LYCFQCFLYKNEKGQGEIVATLLP-------STIDATGNSVSAGQLLCGGLF---STDSL 435

Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKD 257
              C AA  L+H L  N   KE++LR++L   + +   +  L+ +    L+  S ++T+ 
Sbjct: 436 SNWC-AAVALAHALQGNATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQTRV 492

Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRGLAA 315
           G          +L LL TWL++CP AV  FL +  ++ +L   ++          +GL A
Sbjct: 493 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 542

Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
           +LLG  + +N +S        +   I +++G  ++  K   + K  L+S A         
Sbjct: 543 LLLGISIYFNDNSLENYTKEKLKQLIEKRIGKENFIEKLGFISKHELYSRA--------- 593

Query: 376 TRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI---------- 424
                              S K   + P    M FD  F  ++K LE  I          
Sbjct: 594 -------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEE 634

Query: 425 -------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
                         +NIV  Y     E  +   EL+Q+   + K   ++L+  V +Q S+
Sbjct: 635 DKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELKQQVS-TLKCQNEQLQTAVTQQASQ 693

Query: 472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531
           IQ+   +   L  +L K      S  +      +   ++  LR+++ E   +  +L   +
Sbjct: 694 IQQHKDQYNLLKVQLGKDNHHQGSHGDGAQVNGIQPEEISRLREEIEELKSQQALL---Q 750

Query: 532 AQIESDSSMYRNLAAKMESDLKSLSDAY---NSLEQTNFHLEKEVKALKS 578
            Q+    S+  NL +   S +   + A       EQ    L++E+ ALKS
Sbjct: 751 GQLAEKDSLIENLKSSQASGMSEQASATCPPRDPEQVA-ELKQELTALKS 799

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.

Mus musculus (taxid: 10090)

>sp|P41542|USO1_RAT General vesicular transport factor p115 OS=Rattus norvegicus GN=Uso1 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 134/590 (22%), Positives = 235/590 (39%), Gaps = 92/590 (15%)

Query: 19  FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
           ++ QK  NL   L+ + +L+   +         K   +  L+Q+  L  +LM    +   
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGI 325

Query: 79  PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
           P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385

Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
              F  F  KN  GQ  + +TL+P       + ++   N +S G +L  GL    S   L
Sbjct: 386 LYCFQCFLYKNEKGQGEIVATLLP-------STIDATGNSVSAGQLLCGGLF---STDSL 435

Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKD 257
              C AA  L+H L  N   KE++LR++L   + +   +  L+ +    L+  S ++T+ 
Sbjct: 436 SNWC-AAVALAHALQGNATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQTRV 492

Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRGLAA 315
           G          +L LL TWL++CP AV  FL +  ++ +L   ++          +GL A
Sbjct: 493 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 542

Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
           +LLG  + +N +S        +   I +++G  +Y  K   + K  L+S A         
Sbjct: 543 LLLGISIYFNDNSLENYTKEKLKQLIEKRIGKENYIEKLGFISKHELYSRA--------- 593

Query: 376 TRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI---------- 424
                              S K   + P    M FD  F  ++K LE  I          
Sbjct: 594 -------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEE 634

Query: 425 -------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
                         +NIV  Y     E  +   EL+Q+   + K   ++L+  V +Q S+
Sbjct: 635 DKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELKQQVS-TLKCQNEQLQTAVTQQASQ 693

Query: 472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531
           IQ+   +   L  +L K      S S+      +   ++  LR+++ E      +L   +
Sbjct: 694 IQQHKDQYNLLKVQLGKDNHHQGSHSDGAQVNGIQPEEISRLREEIEELRSHQVLL---Q 750

Query: 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNS---LEQTNFHLEKEVKALKS 578
           +Q+    ++  NL +   S +   + A  S    EQ    L++E+ ALKS
Sbjct: 751 SQLAEKDTVIENLRSSQVSGMSEQALATCSPRDAEQVA-ELKQELSALKS 799

General vesicular transport factor required for intercisternal transport in the Golgi stack; it is required for transcytotic fusion and/or subsequent binding of the vesicles to the target membrane. May well act as a vesicular anchor by interacting with the target membrane and holding the vesicular and target membranes in proximity.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
224055585	915	predicted protein [Populus trichocarpa]	0.998	0.716	0.793	0.0
297742681	906	unnamed protein product [Vitis vinifera]	0.995	0.721	0.808	0.0
225465945	915	PREDICTED: golgin candidate 6-like [Viti	0.995	0.714	0.808	0.0
255560944	911	vesicle docking protein P115, putative [	0.989	0.713	0.793	0.0
356570586	916	PREDICTED: golgin candidate 6-like [Glyc	0.983	0.705	0.729	0.0
449450062	911	PREDICTED: golgin candidate 6-like [Cucu	0.992	0.715	0.731	0.0
356573694	914	PREDICTED: golgin candidate 6-like [Glyc	0.971	0.698	0.735	0.0
297818348	914	hypothetical protein ARALYDRAFT_484543 [	0.978	0.703	0.680	0.0
164708700	914	putative p115-like protein [Arabidopsis	0.980	0.704	0.685	0.0
18405423	914	golgin candidate 6 [Arabidopsis thaliana	0.980	0.704	0.685	0.0

>gi|224055585|ref|XP_002298552.1| predicted protein [Populus trichocarpa] gi|222845810|gb|EEE83357.1| predicted protein [Populus trichocarpa]

 Score = 1092 bits (2823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/660 (79%), Positives = 588/660 (89%), Gaps = 4/660 (0%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           +GFD +ISILKLRGSAYSFTQQKTINLLSALETINLL++ GSE+DPGKD +KLTN+TVLV
Sbjct: 257 LGFDAIISILKLRGSAYSFTQQKTINLLSALETINLLLMGGSESDPGKDMNKLTNRTVLV 316

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           Q K  D LL+L VESQWAP+ VRCAALRCI D+I  HPKN D LASKVLGE+PQVE ALN
Sbjct: 317 QNKVFDYLLLLGVESQWAPIPVRCAALRCIGDLIVGHPKNLDTLASKVLGEQPQVEPALN 376

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIILRTSS+QEF+ AD +F SFCE+N DGQ ML STLIPQP SM+HAP+EEDV MSF
Sbjct: 377 SILRIILRTSSVQEFIEADHVFKSFCERNSDGQTMLASTLIPQPYSMTHAPIEEDVRMSF 436

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+ GLTLGESDGDLE CCRAASVLSHIL DN+QCKERVLRIELE+P PSLGA EPLM
Sbjct: 437 GSMLLHGLTLGESDGDLETCCRAASVLSHILRDNIQCKERVLRIELESPTPSLGAPEPLM 496

Query: 241 HRMVRYLALASSMKTKDG---TGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYL 297
           HRMV+YLALAS+MK KDG   T +  Y+Q IILKLLVTWLADCPNA+ CFL SRPHLTYL
Sbjct: 497 HRMVKYLALASNMKNKDGKTSTKENSYVQPIILKLLVTWLADCPNAIQCFLASRPHLTYL 556

Query: 298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEM 357
           LELVSNPSAT+C RGL AVLLGECVIYNKS ++G+DAF++VD+ISQK+GLTSYFLKFDEM
Sbjct: 557 LELVSNPSATMCIRGLGAVLLGECVIYNKSGESGKDAFTVVDAISQKIGLTSYFLKFDEM 616

Query: 358 QKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
            KSFLFSS KPT+  KPLTRS AASMAEI+D+D+ D SD +NEDHP+LSS+FD HFV+ +
Sbjct: 617 MKSFLFSSVKPTKLHKPLTRSAAASMAEIDDVDEQDSSDHKNEDHPILSSLFDSHFVNFV 676

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           KSLE +IRE IVDVYSRPKSEVAVVPAELE + GESDKDY++RLK+FV+KQCSEIQ LLG
Sbjct: 677 KSLEGNIRETIVDVYSRPKSEVAVVPAELELKRGESDKDYIERLKSFVQKQCSEIQNLLG 736

Query: 478 RNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESD 537
           RNATLAE L K GG  +SQ EQR SG LDRVQ ETLR+DL EASQR+E+LK EKA+IES+
Sbjct: 737 RNATLAENLTKTGGSVSSQPEQRTSGGLDRVQAETLRRDLQEASQRIEMLKAEKAKIESE 796

Query: 538 SSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEARE 597
           +SMY+NLA KMESDLKSLSDAYNSLEQ NFHLEKEVKALKSGG+S + PDVEAI+AEARE
Sbjct: 797 ASMYQNLAGKMESDLKSLSDAYNSLEQANFHLEKEVKALKSGGAS-TPPDVEAIRAEARE 855

Query: 598 EAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEEED 657
           EAQKESEAELNDLLVCLGQEQS+VEKLSARL+ELGEDV+KLLEG+GDDMGLPED E+EED
Sbjct: 856 EAQKESEAELNDLLVCLGQEQSRVEKLSARLMELGEDVDKLLEGVGDDMGLPEDSEKEED 915

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742681|emb|CBI35134.3| unnamed protein product [Vitis vinifera]

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/662 (80%), Positives = 594/662 (89%), Gaps = 8/662 (1%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKL-TNKTVL 59
           MGFDPLISILKLRGS YSFTQQKTINLLSALETINLL++ G EA+  KDA++L TNKTVL
Sbjct: 248 MGFDPLISILKLRGSTYSFTQQKTINLLSALETINLLLMGGPEAESAKDANRLLTNKTVL 307

Query: 60  VQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAAL 119
           VQKK LD+LLML VESQWAPVAVRCAAL+CI D+IA +PKN D LASKVLGEEP VE AL
Sbjct: 308 VQKKVLDHLLMLGVESQWAPVAVRCAALQCIGDLIAGYPKNLDALASKVLGEEPHVEPAL 367

Query: 120 NSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMS 179
           NSILRIILRTSS+QEF+AAD +F  FCEKN DGQ ML STLIPQP  M+HAPLEEDVNMS
Sbjct: 368 NSILRIILRTSSVQEFIAADYVFKCFCEKNSDGQTMLASTLIPQPHLMTHAPLEEDVNMS 427

Query: 180 FGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPL 239
           FGSML+RGLTL E+DGDLE CCRAASVLS+IL +N+QCKERVLRIELEAPMPSLGA EPL
Sbjct: 428 FGSMLLRGLTLNENDGDLETCCRAASVLSYILKNNIQCKERVLRIELEAPMPSLGAPEPL 487

Query: 240 MHRMVRYLALASSMKTKDG----TGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLT 295
           MHRMV+YLALASSMK+KDG    TG   Y+Q IILKLLVTWLADCPNAVHCFLDSRPHLT
Sbjct: 488 MHRMVKYLALASSMKSKDGKSSPTGNL-YVQPIILKLLVTWLADCPNAVHCFLDSRPHLT 546

Query: 296 YLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFD 355
           YLLELVSNPSATVC RGL AVLLGECV+YNKSS++G+DAF+IVDSISQKVGLTSYFLKFD
Sbjct: 547 YLLELVSNPSATVCIRGLTAVLLGECVLYNKSSESGKDAFTIVDSISQKVGLTSYFLKFD 606

Query: 356 EMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVD 415
           EMQKSFLFSSAKP Q  K LTRS AASMAEIED++++D S  +NEDHP+L S FD  FV+
Sbjct: 607 EMQKSFLFSSAKPAQPRKALTRSNAASMAEIEDVEEND-SSNQNEDHPILISTFDAQFVN 665

Query: 416 IIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKL 475
           ++K LE  IRENI++VYS+PKS+VAVVPAELEQ++GESD DY+KRLK+FVEKQCSEIQ L
Sbjct: 666 LVKKLELDIRENIIEVYSQPKSKVAVVPAELEQKSGESDGDYIKRLKSFVEKQCSEIQDL 725

Query: 476 LGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIE 535
           LGRNA LAE+LAK GG   SQ EQRA GA +RVQVETLR+DL EASQRLE+LK EKA+IE
Sbjct: 726 LGRNANLAEDLAKTGGGSISQPEQRAGGASERVQVETLRRDLQEASQRLEMLKTEKAKIE 785

Query: 536 SDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEA 595
           S++SMY+NLA KMESDL+SLSDAYNSLEQ N+HLEKEVKALKSGG++  SPD++AIKAEA
Sbjct: 786 SEASMYQNLAGKMESDLQSLSDAYNSLEQANYHLEKEVKALKSGGAT-PSPDIDAIKAEA 844

Query: 596 REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEE 655
           REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDV+KLLEGIGDDMGLPED E+E
Sbjct: 845 REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVDKLLEGIGDDMGLPEDSEDE 904

Query: 656 ED 657
           ED
Sbjct: 905 ED 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465945|ref|XP_002272168.1| PREDICTED: golgin candidate 6-like [Vitis vinifera]

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/662 (80%), Positives = 594/662 (89%), Gaps = 8/662 (1%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKL-TNKTVL 59
           MGFDPLISILKLRGS YSFTQQKTINLLSALETINLL++ G EA+  KDA++L TNKTVL
Sbjct: 257 MGFDPLISILKLRGSTYSFTQQKTINLLSALETINLLLMGGPEAESAKDANRLLTNKTVL 316

Query: 60  VQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAAL 119
           VQKK LD+LLML VESQWAPVAVRCAAL+CI D+IA +PKN D LASKVLGEEP VE AL
Sbjct: 317 VQKKVLDHLLMLGVESQWAPVAVRCAALQCIGDLIAGYPKNLDALASKVLGEEPHVEPAL 376

Query: 120 NSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMS 179
           NSILRIILRTSS+QEF+AAD +F  FCEKN DGQ ML STLIPQP  M+HAPLEEDVNMS
Sbjct: 377 NSILRIILRTSSVQEFIAADYVFKCFCEKNSDGQTMLASTLIPQPHLMTHAPLEEDVNMS 436

Query: 180 FGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPL 239
           FGSML+RGLTL E+DGDLE CCRAASVLS+IL +N+QCKERVLRIELEAPMPSLGA EPL
Sbjct: 437 FGSMLLRGLTLNENDGDLETCCRAASVLSYILKNNIQCKERVLRIELEAPMPSLGAPEPL 496

Query: 240 MHRMVRYLALASSMKTKDG----TGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLT 295
           MHRMV+YLALASSMK+KDG    TG   Y+Q IILKLLVTWLADCPNAVHCFLDSRPHLT
Sbjct: 497 MHRMVKYLALASSMKSKDGKSSPTGNL-YVQPIILKLLVTWLADCPNAVHCFLDSRPHLT 555

Query: 296 YLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFD 355
           YLLELVSNPSATVC RGL AVLLGECV+YNKSS++G+DAF+IVDSISQKVGLTSYFLKFD
Sbjct: 556 YLLELVSNPSATVCIRGLTAVLLGECVLYNKSSESGKDAFTIVDSISQKVGLTSYFLKFD 615

Query: 356 EMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVD 415
           EMQKSFLFSSAKP Q  K LTRS AASMAEIED++++D S  +NEDHP+L S FD  FV+
Sbjct: 616 EMQKSFLFSSAKPAQPRKALTRSNAASMAEIEDVEEND-SSNQNEDHPILISTFDAQFVN 674

Query: 416 IIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKL 475
           ++K LE  IRENI++VYS+PKS+VAVVPAELEQ++GESD DY+KRLK+FVEKQCSEIQ L
Sbjct: 675 LVKKLELDIRENIIEVYSQPKSKVAVVPAELEQKSGESDGDYIKRLKSFVEKQCSEIQDL 734

Query: 476 LGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIE 535
           LGRNA LAE+LAK GG   SQ EQRA GA +RVQVETLR+DL EASQRLE+LK EKA+IE
Sbjct: 735 LGRNANLAEDLAKTGGGSISQPEQRAGGASERVQVETLRRDLQEASQRLEMLKTEKAKIE 794

Query: 536 SDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEA 595
           S++SMY+NLA KMESDL+SLSDAYNSLEQ N+HLEKEVKALKSGG++  SPD++AIKAEA
Sbjct: 795 SEASMYQNLAGKMESDLQSLSDAYNSLEQANYHLEKEVKALKSGGAT-PSPDIDAIKAEA 853

Query: 596 REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEE 655
           REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDV+KLLEGIGDDMGLPED E+E
Sbjct: 854 REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVDKLLEGIGDDMGLPEDSEDE 913

Query: 656 ED 657
           ED
Sbjct: 914 ED 915

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560944|ref|XP_002521485.1| vesicle docking protein P115, putative [Ricinus communis] gi|223539384|gb|EEF40975.1| vesicle docking protein P115, putative [Ricinus communis]

 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/654 (79%), Positives = 583/654 (89%), Gaps = 4/654 (0%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           MGFD LISILKLRGSAYSFTQQKTINLLSALETINLLI+ GSEA+ GKDA+K TN+TVLV
Sbjct: 251 MGFDALISILKLRGSAYSFTQQKTINLLSALETINLLILGGSEAEHGKDANKRTNQTVLV 310

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD LLML VESQWAPVAVRC ALRCI D+IA HPKNRD LA+K LGEEPQVE ALN
Sbjct: 311 QKKMLDYLLMLGVESQWAPVAVRCGALRCIGDLIAGHPKNRDALATKFLGEEPQVEPALN 370

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIIL TSS+QEF AAD +F  FCE+N DGQ ML STLIPQP SM+HAP+E DVNMSF
Sbjct: 371 SILRIILHTSSIQEFTAADNVFKIFCERNSDGQTMLASTLIPQPHSMTHAPVEGDVNMSF 430

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+ GLTLGESDGDLE CCRAASVLSHIL DN+QCKERVLRIELE+P PSLG  E LM
Sbjct: 431 GSMLLHGLTLGESDGDLETCCRAASVLSHILKDNMQCKERVLRIELESPTPSLGVPELLM 490

Query: 241 HRMVRYLALASSMKTKDG---TGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYL 297
           HRMV+YLALASSMK KDG   T +  ++Q IILKL+VTWLA+CP+AV CFLDSRPHLTYL
Sbjct: 491 HRMVKYLALASSMKNKDGKSNTKRNLFVQPIILKLMVTWLAECPSAVQCFLDSRPHLTYL 550

Query: 298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEM 357
           LELVSNPSATVC RGLAAVLLGECVIYNKSS++G+DAF++VD+ISQKVGLTS+FLKFDEM
Sbjct: 551 LELVSNPSATVCIRGLAAVLLGECVIYNKSSESGKDAFAVVDAISQKVGLTSFFLKFDEM 610

Query: 358 QKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
            KSFLFSS KP +  KPLTRS AASM EIED+D+ D SD++NEDHP+LSS FD +FV+ +
Sbjct: 611 MKSFLFSSVKPAEPHKPLTRSAAASMTEIEDVDEQDPSDQKNEDHPILSSTFDNYFVNFV 670

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           K LE+ IRE IVDVYSRPKSEVAVVPAELEQ+NGESDKDY+ RLK FVEKQCSEIQ LLG
Sbjct: 671 KQLETDIRETIVDVYSRPKSEVAVVPAELEQKNGESDKDYIMRLKLFVEKQCSEIQNLLG 730

Query: 478 RNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESD 537
           RNATLAE+LAKIGG  +SQS+QRASG L+RVQ ETLR+DL EA+QR+E+LK EK++IE++
Sbjct: 731 RNATLAEDLAKIGGSASSQSDQRASGGLERVQAETLRRDLQEANQRIEMLKAEKSKIETE 790

Query: 538 SSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEARE 597
           +S Y+NLA KMESDLKSLSDAYNSLE+ NFHLEKEVKALK+GGSS + PD++A+KAEARE
Sbjct: 791 ASTYQNLAGKMESDLKSLSDAYNSLEEANFHLEKEVKALKNGGSS-AVPDIKAVKAEARE 849

Query: 598 EAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPED 651
           EAQKESEAELNDLLVCLGQEQSKVEKLSA+LLELGEDV+ LLEGIGD+ GLP+D
Sbjct: 850 EAQKESEAELNDLLVCLGQEQSKVEKLSAKLLELGEDVDALLEGIGDESGLPDD 903

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570586|ref|XP_003553466.1| PREDICTED: golgin candidate 6-like [Glycine max]

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/650 (72%), Positives = 555/650 (85%), Gaps = 4/650 (0%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           +G D LISILKLRGS Y+FTQQKTINLLSALETINLLI  GS+ADPGKD +K TNK  L+
Sbjct: 256 IGLDSLISILKLRGSGYTFTQQKTINLLSALETINLLIKVGSDADPGKDLNKQTNKRTLI 315

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD LLML+VESQWAPVAVRCAALRCI D+IA   KN DVL+SK LGEEPQVE ALN
Sbjct: 316 QKKLLDYLLMLSVESQWAPVAVRCAALRCIGDLIAGDSKNCDVLSSKFLGEEPQVEPALN 375

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIILRTSSMQEF+AAD +F SFCEKN DGQ+ML STLIPQP SM++APLEEDVNMSF
Sbjct: 376 SILRIILRTSSMQEFIAADFVFKSFCEKNADGQSMLASTLIPQPYSMNYAPLEEDVNMSF 435

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+ GLTLGE+DGDLEVC RAASVLSH+L DNL CK+RVLRI +EAP+PSLGA EPLM
Sbjct: 436 GSMLLHGLTLGENDGDLEVCGRAASVLSHVLKDNLHCKDRVLRIRIEAPVPSLGAPEPLM 495

Query: 241 HRMVRYLALASSMKTKDGTGKAG---YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYL 297
           HRMV+YLALASSMK+KDG  ++    YIQ  ILKLLVTWLADCP AVHCFLD+RPHLTYL
Sbjct: 496 HRMVKYLALASSMKSKDGKSRSSENSYIQEYILKLLVTWLADCPAAVHCFLDARPHLTYL 555

Query: 298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEM 357
           LELVSN S TVC R LAAV+LGECVIYNKSSD+ +DAF+IVD +SQK+GL+SYFL FDEM
Sbjct: 556 LELVSNLSETVCVRDLAAVVLGECVIYNKSSDSAKDAFAIVDMMSQKIGLSSYFLMFDEM 615

Query: 358 QKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
           QKSF F++ + +  LK  TRS+AASM +I D D++DLS+++N DHP+LSS+ D +FV+++
Sbjct: 616 QKSFAFANIESSLNLKSFTRSSAASMEDIADSDNNDLSEQKNMDHPILSSILDSYFVNLV 675

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           K LE+ IRE IV+ +S PK +VAVVPAELEQ+ GESD +Y++RLKAF+EKQCSEIQ LL 
Sbjct: 676 KGLEADIREQIVEAFSHPKVQVAVVPAELEQKMGESDGEYIRRLKAFLEKQCSEIQDLLS 735

Query: 478 RNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESD 537
           RNA+LAE+LA+ GG   SQSEQR SG+ D+VQ+  L +DL E S+RLE+LK EKA++ES+
Sbjct: 736 RNASLAEDLARTGGGSNSQSEQRVSGSSDKVQINALSRDLQETSKRLEMLKAEKAEVESE 795

Query: 538 SSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEARE 597
           +   R LA KME+DL+SLS AYNSLEQ+N   EK+VKALKSG  S +  D+EAIKAEARE
Sbjct: 796 ARKNRTLAEKMEADLRSLSGAYNSLEQSNIEQEKQVKALKSGAPS-TFLDLEAIKAEARE 854

Query: 598 EAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMG 647
           EAQKESE ELNDLLVCLGQEQSKV++LSARLLELGEDV+KLLEG+GDD+G
Sbjct: 855 EAQKESEGELNDLLVCLGQEQSKVDRLSARLLELGEDVDKLLEGVGDDVG 904

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450062|ref|XP_004142783.1| PREDICTED: golgin candidate 6-like [Cucumis sativus]

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/659 (73%), Positives = 569/659 (86%), Gaps = 7/659 (1%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           MG DPLISIL+ RG  YSFTQQKT+NLLSALETINLLI+   + DPGKD +KLTNKT LV
Sbjct: 257 MGLDPLISILRSRGGNYSFTQQKTVNLLSALETINLLIMGDPKVDPGKDGNKLTNKTTLV 316

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD LL+L VESQWAPV VRCAAL+CI ++I+ HP+N D +A+K LG+  Q E ALN
Sbjct: 317 QKKVLDYLLLLGVESQWAPVPVRCAALQCIGNLISEHPRNIDAIATKRLGDNVQ-EPALN 375

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIILRTSS QEF AAD +F  FCEKN DGQ ML STLIPQPQSM +APLEEDVNMSF
Sbjct: 376 SILRIILRTSSTQEFFAADYVFKCFCEKNSDGQTMLASTLIPQPQSMMYAPLEEDVNMSF 435

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+R LTL E++GDLE CCRAASVLSH++ +N QCKERVL+I+LEAPM SLG  EPLM
Sbjct: 436 GSMLLRSLTLSENNGDLETCCRAASVLSHVIKNNNQCKERVLKIKLEAPMSSLGDPEPLM 495

Query: 241 HRMVRYLALASSMKTKDGT---GKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYL 297
           HRMV+YLA+ASSMK ++G        Y+QLIILKLL+ WLADCP AV CFLDSRPHLTYL
Sbjct: 496 HRMVKYLAVASSMKNRNGKSALNNNSYVQLIILKLLIIWLADCPGAVQCFLDSRPHLTYL 555

Query: 298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEM 357
           LELV++ S TV  RGLAAV+LGECVIYNKSSD  +DAFSIVD+ISQKVGLTSYFLKFDE+
Sbjct: 556 LELVADSSVTVSMRGLAAVILGECVIYNKSSDHEKDAFSIVDTISQKVGLTSYFLKFDEL 615

Query: 358 QKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
           QKS LF+S K ++  K LTRSTAASMAEIED+D+ D S +++E+ P+LSS+FD HF++ +
Sbjct: 616 QKSILFAS-KSSEPRKVLTRSTAASMAEIEDVDEDDPSSQKDEELPILSSVFDSHFINTV 674

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           K LE+ +RE+IV +YS+PKS+VAVVPAELEQR GE+D +Y+KRLKAF+EKQC+EIQ LLG
Sbjct: 675 KKLEADVRESIVVIYSQPKSKVAVVPAELEQRKGETDGEYIKRLKAFLEKQCTEIQDLLG 734

Query: 478 RNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESD 537
           RNATLAE+L+KIGG+ +S SEQRASG  +RVQ+ETL++DL E S+RLE+LKEEK +IESD
Sbjct: 735 RNATLAEDLSKIGGNDSS-SEQRASGPSNRVQLETLQRDLQETSKRLELLKEEKVKIESD 793

Query: 538 SSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEARE 597
           +S Y+NLA+KMESDLKSLSDAYNSLEQ N+HLEKE KALKSG  S+ SPD+EAIKAEARE
Sbjct: 794 ASYYKNLASKMESDLKSLSDAYNSLEQANYHLEKEAKALKSGEHSI-SPDIEAIKAEARE 852

Query: 598 EAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEEE 656
           EAQKESE ELNDLLVCLGQEQS+V++LSARL+ELGEDV+KLLEGIGDD+G+PEDDE+E+
Sbjct: 853 EAQKESETELNDLLVCLGQEQSRVDRLSARLIELGEDVDKLLEGIGDDLGMPEDDEDED 911

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573694|ref|XP_003554992.1| PREDICTED: golgin candidate 6-like [Glycine max]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/646 (73%), Positives = 550/646 (85%), Gaps = 8/646 (1%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           +G D LI ILKLRGS+++F QQKTINLLSALETI LL+  GSE+DPGKD +K TNKT LV
Sbjct: 256 VGLDSLILILKLRGSSFTFNQQKTINLLSALETIKLLLKGGSESDPGKDMNKQTNKTTLV 315

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD+LL+L VESQW PV VRCAA+RCI D+IA   KNRD+LASKVLGEEP VE ALN
Sbjct: 316 QKKILDHLLILGVESQWVPVPVRCAAMRCIGDLIAGDSKNRDLLASKVLGEEPHVEPALN 375

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRI+LRTSSMQEF+AAD IF SFCEKN DGQ+ML STLIPQP SM+HA LEEDVNMSF
Sbjct: 376 SILRILLRTSSMQEFIAADYIFKSFCEKNADGQSMLASTLIPQPYSMNHAFLEEDVNMSF 435

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEA-PMPSLGAAEPL 239
           GSML+  LTLGE +GDLE CCRAASVLSH+L D+LQCKERVLRIE+EA PM SLGA EPL
Sbjct: 436 GSMLLHSLTLGE-NGDLETCCRAASVLSHMLKDHLQCKERVLRIEIEAAPMQSLGAPEPL 494

Query: 240 MHRMVRYLALASSMKTKDG---TGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTY 296
           MHRMV+YLA+ASSMK  DG   T    Y+Q IILKLL+TWLADCP+AVHCFLD+RPHLTY
Sbjct: 495 MHRMVKYLAVASSMKFHDGKSSTSGNSYVQAIILKLLITWLADCPSAVHCFLDARPHLTY 554

Query: 297 LLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDE 356
           LLELVSN S TVC RG AAV+LGECVIYNKS+D G+DAF+IVD+ISQK+GL+SYFLKFDE
Sbjct: 555 LLELVSNSSETVCIRGFAAVVLGECVIYNKSTDRGKDAFAIVDTISQKIGLSSYFLKFDE 614

Query: 357 MQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDI 416
           MQKS +FSS + +   +   RS+AASMA+IED+D +DLS+K+N DHP+LSS+ D +F+++
Sbjct: 615 MQKSSIFSSLESSLTHRSFARSSAASMADIEDVDGNDLSEKKNLDHPILSSILDSNFMNL 674

Query: 417 IKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLL 476
           +KSLE+ IRE IV+VYSRPK +VAVVPAELEQR+GESD +Y+KRLK FVEKQCSEIQ L+
Sbjct: 675 VKSLEADIREQIVEVYSRPKMKVAVVPAELEQRSGESDAEYIKRLKVFVEKQCSEIQDLV 734

Query: 477 GRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536
            RNA++AE+LAK G     Q EQR SG  DRV +ETL +DL EASQRLE+LK EKA++ES
Sbjct: 735 LRNASMAEDLAKTG--STLQPEQRVSGGSDRVPIETLHRDLQEASQRLEMLKAEKAKVES 792

Query: 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAR 596
           ++ MYRNLA K E+DL+SLSDAYNSLEQ+N  LE EVKALK  G S + PDV+AIKAEAR
Sbjct: 793 EAIMYRNLAGKTEADLRSLSDAYNSLEQSNLLLENEVKALKREGHS-TFPDVDAIKAEAR 851

Query: 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGI 642
           EEAQKESE ELNDLLVCLGQEQSKVE+LSARLLELGEDV+ LLEGI
Sbjct: 852 EEAQKESEGELNDLLVCLGQEQSKVERLSARLLELGEDVDILLEGI 897

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818348|ref|XP_002877057.1| hypothetical protein ARALYDRAFT_484543 [Arabidopsis lyrata subsp. lyrata] gi|297322895|gb|EFH53316.1| hypothetical protein ARALYDRAFT_484543 [Arabidopsis lyrata subsp. lyrata]

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/647 (68%), Positives = 541/647 (83%), Gaps = 4/647 (0%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           MGF+P+ISILKLRG  Y +T+QKT+NLLSALETIN+LI+ G++ +PGKD++KL N+TVLV
Sbjct: 256 MGFEPIISILKLRGITYKYTKQKTVNLLSALETINMLIMGGADTEPGKDSNKLANRTVLV 315

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD+LLML VESQWAPVAVRC   +CI D+I  HPKNRD+LASKVLGE+ QVE ALN
Sbjct: 316 QKKLLDHLLMLGVESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALN 375

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIIL+TS++QEF+AAD +F +FCEKNP+GQ ML STLIPQP   +  PLE+DV+MSF
Sbjct: 376 SILRIILQTSNIQEFVAADYVFKTFCEKNPEGQTMLASTLIPQPHPTARDPLEDDVHMSF 435

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+RGL  GE+DGDLE CCRAAS+L H++ DNLQCKE+ L+I LE+PMPS+G  EPL+
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILFHVVKDNLQCKEKALKIVLESPMPSMGTPEPLL 495

Query: 241 HRMVRYLALASSMKTKDGTGKAG--YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL 298
            R+VRYLA+ASSMK KD +   G  YIQ IILKLLVTW  DCP AV CFLDSR HL +LL
Sbjct: 496 QRIVRYLAVASSMKGKDKSSTLGKSYIQQIILKLLVTWTVDCPAAVQCFLDSRHHLKFLL 555

Query: 299 ELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQ 358
           ELV++P+ATVC RGLA++LLGECVIYNKS + G+DAF++VD++ QK+GLTSYF KF+EMQ
Sbjct: 556 ELVTDPAATVCIRGLASILLGECVIYNKSIENGKDAFAVVDAVGQKMGLTSYFSKFEEMQ 615

Query: 359 KSFLFS-SAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
            SF+FS S KP Q  KPLTR+   S AEI ++D +D   + NEDHP+L S+FD  F+ ++
Sbjct: 616 NSFIFSTSKKPQQGYKPLTRTATPSEAEINEVDGADEMVRGNEDHPMLLSLFDASFIGLV 675

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           KSLE +IRE IV+VYSRPKSEVAVVPA+LEQ++GE +KDY+ RLKAF+EKQCSEIQ LL 
Sbjct: 676 KSLEGNIRERIVEVYSRPKSEVAVVPADLEQKSGEIEKDYINRLKAFIEKQCSEIQNLLA 735

Query: 478 RNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536
           RNA LAE++A  G +  SQ SEQRAS  +D+VQ+E++R++L E SQRLE +K EKA+IES
Sbjct: 736 RNAALAEDVASSGRNEQSQGSEQRASTVMDKVQMESIRRELQETSQRLETVKAEKAKIES 795

Query: 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAR 596
           ++S Y+N+AAK+ESDLKSLSDAYNSLEQ N+HLE+EVK+LK G   +  PD+EAIK E R
Sbjct: 796 EASTYKNMAAKLESDLKSLSDAYNSLEQANYHLEQEVKSLKGGEGPMEFPDIEAIKEEVR 855

Query: 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIG 643
           +EAQKESE ELNDLLVCLGQE+SKVEKLSA+L+ELG DV+KLLE IG
Sbjct: 856 KEAQKESEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLEDIG 902

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164708700|gb|ABY67247.1| putative p115-like protein [Arabidopsis thaliana]

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/648 (68%), Positives = 541/648 (83%), Gaps = 4/648 (0%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           MGF+P+ISILKLRG  Y FTQQKT+NLLSALETIN+LI+ G++ +PGKD++KL N+TVLV
Sbjct: 256 MGFEPIISILKLRGITYKFTQQKTVNLLSALETINMLIMGGADTEPGKDSNKLANRTVLV 315

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD LLML VESQWAPVAVRC   +CI D+I  HPKNRD+LASKVLGE+ QVE ALN
Sbjct: 316 QKKLLDYLLMLGVESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALN 375

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIIL+TSS+QEF+AAD +F +FCEKN +GQ ML STLIPQP   S  PLE+DV+MSF
Sbjct: 376 SILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTMLASTLIPQPHPTSRDPLEDDVHMSF 435

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+RGL  GE+DGDLE CCRAAS+LSH++ DNL+CKE+ L+I LE+PMPS+G  EPL 
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLF 495

Query: 241 HRMVRYLALASSMKTKDGTGKAG--YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL 298
            R+VRYLA+ASS+K+K+ +   G  YIQ IILKLLVTW  DCP AV CFLDSR HLT+LL
Sbjct: 496 QRIVRYLAVASSIKSKEKSSTLGKSYIQQIILKLLVTWTVDCPAAVQCFLDSRHHLTFLL 555

Query: 299 ELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQ 358
           ELV++P+ATVC RGLA++LLGECVIYNKS + G+DAFS+VD++ QK+GLTSYF KF+EMQ
Sbjct: 556 ELVTDPAATVCIRGLASILLGECVIYNKSIENGKDAFSVVDAVGQKMGLTSYFSKFEEMQ 615

Query: 359 KSFLFS-SAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
            SF+FS S KP Q  KPLTR+   S AEI ++D+ D   K NEDHP+L S+FD  F+ ++
Sbjct: 616 NSFIFSPSKKPPQGYKPLTRTPTPSEAEINEVDEVDEMVKGNEDHPMLLSLFDASFIGLV 675

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           KSLE +IRE IVDVYSRPKSEVAVVPA+LEQ++GE++ DY+ RLKAF+EKQCSEIQ LL 
Sbjct: 676 KSLEGNIRERIVDVYSRPKSEVAVVPADLEQKSGENEIDYINRLKAFIEKQCSEIQNLLA 735

Query: 478 RNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536
           RNA LAE++A  G +   Q SEQRAS  +D+VQ+E++R++L E SQRLE +K EKA+IES
Sbjct: 736 RNAALAEDVASSGRNEQPQGSEQRASTVMDKVQMESIRRELQETSQRLETVKAEKAKIES 795

Query: 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAR 596
           ++S Y+N+AAK+E DLKSLSDAYNSLEQ N+HLE+EVK+LK G S +  PD+EAIK E R
Sbjct: 796 EASSYKNMAAKLEFDLKSLSDAYNSLEQANYHLEQEVKSLKGGESPMQFPDIEAIKEEVR 855

Query: 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGD 644
           +EAQKESE ELNDLLVCLGQE+SKVEKLSA+L+ELG DV+KLLE IGD
Sbjct: 856 KEAQKESEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLEDIGD 903

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405423|ref|NP_566820.1| golgin candidate 6 [Arabidopsis thaliana] gi|205785974|sp|B0F9L4.2|GOGC6_ARATH RecName: Full=Golgin candidate 6; Short=AtGC6 gi|332643813|gb|AEE77334.1| golgin candidate 6 [Arabidopsis thaliana]

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/648 (68%), Positives = 540/648 (83%), Gaps = 4/648 (0%)

Query: 1   MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
           MGF+P+ISILKLRG  Y FTQQKT+NLLSALETIN+LI+  ++ +PGKD++KL N+TVLV
Sbjct: 256 MGFEPIISILKLRGITYKFTQQKTVNLLSALETINMLIMGRADTEPGKDSNKLANRTVLV 315

Query: 61  QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
           QKK LD LLML VESQWAPVAVRC   +CI D+I  HPKNRD+LASKVLGE+ QVE ALN
Sbjct: 316 QKKLLDYLLMLGVESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALN 375

Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
           SILRIIL+TSS+QEF+AAD +F +FCEKN +GQ ML STLIPQP   S   LE+DV+MSF
Sbjct: 376 SILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTMLASTLIPQPHPTSRDHLEDDVHMSF 435

Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
           GSML+RGL  GE+DGDLE CCRAAS+LSH++ DNL+CKE+ L+I LE+PMPS+G  EPL 
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLF 495

Query: 241 HRMVRYLALASSMKTKDGTGKAG--YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL 298
            R+VRYLA+ASSMK+K+ +   G  YIQ IILKLLVTW  DCP AV CFLDSR HLT+LL
Sbjct: 496 QRIVRYLAVASSMKSKEKSSTLGKSYIQQIILKLLVTWTVDCPTAVQCFLDSRHHLTFLL 555

Query: 299 ELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQ 358
           ELV++P+ATVC RGLA++LLGECVIYNKS + G+DAFS+VD++ QK+GLTSYF KF+EMQ
Sbjct: 556 ELVTDPAATVCIRGLASILLGECVIYNKSIENGKDAFSVVDAVGQKMGLTSYFSKFEEMQ 615

Query: 359 KSFLFS-SAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
            SF+FS S KP Q  KPLTR+   S AEI ++D+ D   K NEDHP+L S+FD  F+ ++
Sbjct: 616 NSFIFSPSKKPPQGYKPLTRTPTPSEAEINEVDEVDEMVKGNEDHPMLLSLFDASFIGLV 675

Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
           KSLE +IRE IVDVYSRPKSEVAVVPA+LEQ++GE++KDY+ RLKAF+EKQCSEIQ LL 
Sbjct: 676 KSLEGNIRERIVDVYSRPKSEVAVVPADLEQKSGENEKDYINRLKAFIEKQCSEIQNLLA 735

Query: 478 RNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536
           RNA LAE++A  G +  SQ SEQRAS  +D+VQ+E++R++L E SQRLE +K EKA+IES
Sbjct: 736 RNAALAEDVASSGRNEQSQGSEQRASTVMDKVQMESIRRELQETSQRLETVKAEKAKIES 795

Query: 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAR 596
           ++S  +N+AAK+E DLKSLSDAYNSLEQ N+HLE+EVK+LK G S +  PD+EAIK E R
Sbjct: 796 EASSNKNMAAKLEFDLKSLSDAYNSLEQANYHLEQEVKSLKGGESPMQFPDIEAIKEEVR 855

Query: 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGD 644
           +EAQKESE ELNDLLVCLGQE+SKVEKLSA+L+ELG DV+KLLE IGD
Sbjct: 856 KEAQKESEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLEDIGD 903

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
TAIR|locus:2091438	914	GC6 "golgin candidate 6" [Arab	0.996	0.716	0.670	1.5e-234
UNIPROTKB|D4AAH7	897	Uso1 "General vesicular transp	0.908	0.665	0.242	1.2e-24
ZFIN|ZDB-GENE-040426-688	956	uso1 "USO1 homolog, vesicle do	0.814	0.559	0.234	7.5e-22
UNIPROTKB|H0Y7C0	638	USO1 "General vesicular transp	0.796	0.819	0.245	1.5e-20
UNIPROTKB|F1NJ69	927	USO1 "Uncharacterized protein"	0.805	0.570	0.244	8.5e-20
UNIPROTKB|F5GYR8	971	USO1 "General vesicular transp	0.669	0.453	0.25	3.6e-16
DICTYBASE|DDB_G0275331	1048	DDB_G0275331 "general vesicula	0.299	0.187	0.294	1.7e-18
UNIPROTKB|F5GZ76	797	USO1 "General vesicular transp	0.657	0.542	0.251	3.4e-16
UNIPROTKB|F5H4X1	947	USO1 "General vesicular transp	0.657	0.456	0.251	4.4e-16
UNIPROTKB|O60763	962	USO1 "General vesicular transp	0.657	0.449	0.251	4.5e-16

TAIR|locus:2091438 GC6 "golgin candidate 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 2262 (801.3 bits), Expect = 1.5e-234, P = 1.5e-234
 Identities = 442/659 (67%), Positives = 538/659 (81%)

Query:     1 MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
             MGF+P+ISILKLRG  Y FTQQKT+NLLSALETIN+LI+  ++ +PGKD++KL N+TVLV
Sbjct:   256 MGFEPIISILKLRGITYKFTQQKTVNLLSALETINMLIMGRADTEPGKDSNKLANRTVLV 315

Query:    61 QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
             QKK LD LLML VESQWAPVAVRC   +CI D+I  HPKNRD+LASKVLGE+ QVE ALN
Sbjct:   316 QKKLLDYLLMLGVESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALN 375

Query:   121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
             SILRIIL+TSS+QEF+AAD +F +FCEKN +GQ ML STLIPQP   S   LE+DV+MSF
Sbjct:   376 SILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTMLASTLIPQPHPTSRDHLEDDVHMSF 435

Query:   181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
             GSML+RGL  GE+DGDLE CCRAAS+LSH++ DNL+CKE+ L+I LE+PMPS+G  EPL 
Sbjct:   436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLF 495

Query:   241 HRMVRYLALASSMKTKDGTGKAG--YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL 298
              R+VRYLA+ASSMK+K+ +   G  YIQ IILKLLVTW  DCP AV CFLDSR HLT+LL
Sbjct:   496 QRIVRYLAVASSMKSKEKSSTLGKSYIQQIILKLLVTWTVDCPTAVQCFLDSRHHLTFLL 555

Query:   299 ELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQ 358
             ELV++P+ATVC RGLA++LLGECVIYNKS + G+DAFS+VD++ QK+GLTSYF KF+EMQ
Sbjct:   556 ELVTDPAATVCIRGLASILLGECVIYNKSIENGKDAFSVVDAVGQKMGLTSYFSKFEEMQ 615

Query:   359 KSFLFS-SAKPTQALKPLTRSTAASMAXXXXXXXXXXXXKENEDHPLLSSMFDKHFVDII 417
              SF+FS S KP Q  KPLTR+   S A            K NEDHP+L S+FD  F+ ++
Sbjct:   616 NSFIFSPSKKPPQGYKPLTRTPTPSEAEINEVDEVDEMVKGNEDHPMLLSLFDASFIGLV 675

Query:   418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
             KSLE +IRE IVDVYSRPKSEVAVVPA+LEQ++GE++KDY+ RLKAF+EKQCSEIQ LL 
Sbjct:   676 KSLEGNIRERIVDVYSRPKSEVAVVPADLEQKSGENEKDYINRLKAFIEKQCSEIQNLLA 735

Query:   478 RNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536
             RNA LAE++A  G +  SQ SEQRAS  +D+VQ+E++R++L E SQRLE +K EKA+IES
Sbjct:   736 RNAALAEDVASSGRNEQSQGSEQRASTVMDKVQMESIRRELQETSQRLETVKAEKAKIES 795

Query:   537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAR 596
             ++S  +N+AAK+E DLKSLSDAYNSLEQ N+HLE+EVK+LK G S +  PD+EAIK E R
Sbjct:   796 EASSNKNMAAKLEFDLKSLSDAYNSLEQANYHLEQEVKSLKGGESPMQFPDIEAIKEEVR 855

Query:   597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEE 655
             +EAQKESE ELNDLLVCLGQE+SKVEKLSA+L+ELG DV+KLLE IGD+     + EE+
Sbjct:   856 KEAQKESEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLEDIGDESEAQAESEED 914

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA;ISS

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0032527 "protein exit from endoplasmic reticulum" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009639 "response to red or far red light" evidence=RCA

UNIPROTKB|D4AAH7 Uso1 "General vesicular transport factor p115" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 160/660 (24%), Positives = 285/660 (43%)

Query:    19 FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
             ++ QK  NL   L+ + +L+   +         K   +  L+Q+  L  +LM    +   
Sbjct:   272 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGI 325

Query:    79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
             P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct:   326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385

Query:   139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
                F  F  KN  GQ  + +TL+P       + ++   N +S G +L  GL   +S   L
Sbjct:   386 LYCFQCFLYKNEKGQGEIVATLLP-------STIDATGNSVSAGQLLCGGLFSTDS---L 435

Query:   198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAE-PLMHRMVRYLALASSMKTK 256
                C AA  L+H L  N   KE++LR++L     S+G     L+ +    L+  S ++T+
Sbjct:   436 SNWC-AAVALAHALQGNATQKEQLLRVQLAT---SIGNPPVSLLQQCTNILSQGSKIQTR 491

Query:   257 DGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL-ELVSN-PSATVCTRGLA 314
              G          +L LL TWL++CP AV  FL +  ++ +L  ++  N        +GL 
Sbjct:   492 VG----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLC 541

Query:   315 AVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKP 374
             A+LLG  + +N +S        +   I +++G  +Y  K   + K  L+S A      KP
Sbjct:   542 ALLLGISIYFNDNSLENYTKEKLKQLIEKRIGKENYIEKLGFISKHELYSRASQ----KP 597

Query:   375 LTRSTAASMAXXXXXXXXXXXXKENEDHPLL--SSMFDKHFVDIIKSLESSIRENIVDVY 432
                  +                 E      +  SS  DK   ++ K+LE    +NIV  Y
Sbjct:   598 QPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQ--HDNIVTHY 655

Query:   433 SRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGD 492
                  E  +   EL+Q+     K   ++L+  V +Q S+IQ+   +   L  +L K    
Sbjct:   656 KNMIREQDLQLEELKQQVSTL-KCQNEQLQTAVTQQASQIQQHKDQYNLLKVQLGKDNHH 714

Query:   493 GASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESD-SSMYRNLAAKMESD 551
               S S+      +   ++  LR+++ E      +L+ + A+ ++   ++ +++  + ES+
Sbjct:   715 QGSHSDGAQVNGIQPEEISRLREEIEELRSHQVLLQSQLAEKDTVIENLAKSVPVEGESE 774

Query:   552 LKSLSDA------YNSLEQTNFHLEKEVKALKSGGSSV-----SSPDVEAIKAEAREEAQ 600
             L + +         ++L Q    L+ E+KAL    +++     SS    AI    +++  
Sbjct:   775 LVTAAKTTDVEGRLSALLQETKELKNEIKALSEERTAIQKQLDSSNSTIAILQTEKDKLY 834

Query:   601 KE---SEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEEED 657
              E   S+ E +DLLV L  +  K+  L ++L +LG  VE+  E   D+ G  EDD++E D
Sbjct:   835 LEVTDSKKEQDDLLVLLADQDQKILSLKSKLKDLGHPVEE--E---DESGDQEDDDDELD 889

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

ZFIN|ZDB-GENE-040426-688 uso1 "USO1 homolog, vesicle docking protein (yeast)" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 7.5e-22, P = 7.5e-22
 Identities = 133/567 (23%), Positives = 239/567 (42%)

Query:    79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
             P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct:   330 PADILTETINTVSEVIRGSEVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 389

Query:   139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLE 198
                F  F  KN  GQ  + +TL+P       + ++ + ++S G +L  GL   +S   L 
Sbjct:   390 LYCFQCFLYKNQKGQGEIVATLLP-------STIDAN-SISAGQLLCGGLFSADS---LS 438

Query:   199 VCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAE-PLMHRMVRYLALASSMKTKD 257
               C AA  L+H L DNL  KE++LR++L     SLG     L+ +    L+    +  + 
Sbjct:   439 NWC-AAVALAHALQDNLTQKEQLLRVQLAT---SLGKPPVSLLQQCTNILSQGDKLNRR- 493

Query:   258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATV--CTRGLAA 315
               G     ++ +L LL TW+++CP AV  FL ++ ++ +L   +S          +GL A
Sbjct:   494 --GSRVQTKVGLLMLLCTWISNCPIAVMHFLHNQDNVPFLTGQISENLGEDERLVQGLCA 551

Query:   316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
             +LLG C+ YN +S        +   I +++G  ++  K   + K  L+S A   Q  +P 
Sbjct:   552 LLLGICIYYNDNSLENYTKEKLKQLIEKRIGKENFVEKLAFITKHELYSRA--AQKPQPA 609

Query:   376 TRSTAASMAXXXXXXXXXXXXKENEDHPLL-SSMFDKHFVDIIKSLESSIRENIVDVYSR 434
               ST   M             +      +L SS  +K   ++ K+LE    ++IV  Y  
Sbjct:   610 F-STPEHMLFDHEFTKLVKELEGMITKAVLRSSEEEKKEEEVKKTLEQ--HDSIVTQYKE 666

Query:   435 PKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGA 494
                E      EL+++         + L++ + +Q S+IQ+   +   L  +L K      
Sbjct:   667 LIREQDSQINELKKQVTALTSQ-TENLESTITQQLSQIQQHKDQYNILKLKLGKDTQQAG 725

Query:   495 SQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES-DSSMYRNLAAKMESDLK 553
             +Q+E      L   ++  LR+ L E  ++ ++L+ +  + +S  +S+       +E    
Sbjct:   726 NQAEAAHVNGLQPEELSQLRERLEEVQRQNQLLQTQLTEKDSLITSLKAEGVPSVEDSTS 785

Query:   554 SLSDAYNSLEQTNFHLEK---EVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDL 610
              +++    +E     L+    E+  L++    +       +   A E   KE  AEL   
Sbjct:   786 EVTELRKEVEGLKAQLQSQTAEITQLQNERQELLRGSEPTVAVPAEESVYKEKIAELESR 845

Query:   611 LVCLGQEQSKVEKLSARLLELGEDVEK 637
             L     E  K++     LLE  E +EK
Sbjct:   846 LSAQTTENQKLKGEVKTLLESKESMEK 872

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|H0Y7C0 USO1 "General vesicular transport factor p115" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 138/563 (24%), Positives = 240/563 (42%)

Query:    87 LRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFC 146
             +  +S++I     N+D  AS      P   A +  ++ ++          A    F  F 
Sbjct:     3 INTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 62

Query:   147 EKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDLEVCCRAAS 205
              KN  GQ  + STL+P       + ++   N +S G +L  GL   +S   L   C AA 
Sbjct:    63 YKNQKGQGEIVSTLLP-------STIDATGNSVSAGQLLCGGLFSTDS---LSNWC-AAV 111

Query:   206 VLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYI 265
              L+H L +N   KE++LR++L     S+G   P +  + +   + S     D  G     
Sbjct:   112 ALAHALQENATQKEQLLRVQLAT---SIG--NPPVSLLQQCTNILSQGDKIDRRGSKIQT 166

Query:   266 QLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL-ELVSN-PSATVCTRGLAAVLLGECVI 323
             ++ +L LL TWL++CP AV  FL +  ++ +L  ++  N        +GL A+LLG  + 
Sbjct:   167 RVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIY 226

Query:   324 YNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASM 383
             +N +S        +   I +++G  ++  K   + K  L+S A      KP     +   
Sbjct:   227 FNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRASQ----KPQPNFPSPEY 282

Query:   384 AXXXXXXXXXXXXKENEDHPLL--SSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAV 441
                           E      +  SS  DK   ++ K+LE    +NIV  Y     E  +
Sbjct:   283 MIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQ--HDNIVTHYKNMIREQDL 340

Query:   442 VPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRA 501
                EL Q+     K   ++L+  V +Q S+IQ+   +   L  +L K      S SE   
Sbjct:   341 QLEELRQQVSTL-KCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLGKDNQHQGSYSEGAQ 399

Query:   502 SGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNS 561
                +   ++  LR+++ E  +  E+L+   +Q+    SM  N+ +   S     S A  S
Sbjct:   400 MNGIQPEEIGRLREEIEELKRNQELLQ---SQLTEKDSMIENMKSSQTSGTNEQSSAIVS 456

Query:   562 LEQTN--FHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQS 619
                +     L++E+  LKS  +S  S ++  ++ E +E  QK +EA    + V  G+ ++
Sbjct:   457 ARDSEQVAELKQELATLKSQLNS-QSVEITKLQTEKQELLQK-TEAFAKSVEV-QGETET 513

Query:   620 ----KVEKLSARLLELGEDVEKL 638
                 K   +  RL  L ++ ++L
Sbjct:   514 IIATKTTDVEGRLSALLQETKEL 536

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

UNIPROTKB|F1NJ69 USO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 8.5e-20, P = 8.5e-20
 Identities = 141/576 (24%), Positives = 240/576 (41%)

Query:    79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
             P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct:   327 PADILTETINTVSEVIRGCQMNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 386

Query:   139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLE 198
                F  F  KN  GQ  + STL+P     + +      ++S G +L  GL   +S   L 
Sbjct:   387 LYCFQCFLYKNHKGQGEIVSTLLPSTIDATGS------SVSAGQLLCGGLFSTDS---LS 437

Query:   199 VCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAE-PLMHRMVRYLALASSMKTKD 257
               C AA  L+H L +N   KE++LR++L     S+G     L+ +    L+  S ++T+ 
Sbjct:   438 NWC-AAVALAHALQENAALKEQLLRVQLAT---SIGNPPVSLLQQCTNILSQGSKVQTRV 493

Query:   258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL-ELVSN-PSATVCTRGLAA 315
             G          +L LL TWL++C  AV  FL +  ++ +L  ++  N        +GL A
Sbjct:   494 G----------LLMLLCTWLSNCSIAVTHFLHNPANVPFLTGQIAENLGEEEQLVQGLCA 543

Query:   316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
             +LLG  + YN +S        +   I +++G  ++  K   + K  L+S A   Q  +P 
Sbjct:   544 LLLGISIYYNDNSLENYRKEKLKQLIEKRIGRENFVEKLGFISKHELYSRA--AQKPQPG 601

Query:   376 TRSTAASMAXXXXXXXXXXXXKENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRP 435
               S    M                      SS  DK   ++ K+LE    +NIV  Y + 
Sbjct:   602 FSSPEHMMFDHEFTKLVKELEGVISKAIYKSSEEDKKEEEVKKTLEQ--HDNIVTHYKKV 659

Query:   436 KSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGAS 495
               E      EL+Q+     K   ++L+  V +Q S+IQ+   +   L  +L K      S
Sbjct:   660 IREQDQELEELKQQVSTL-KSQNEQLQVTVTQQVSQIQQHKDQYNLLKVQLGKDTQHHNS 718

Query:   496 QSEQRASGALDRVQVETLRKDLHEASQRLEIL----KEEKAQIESDSSMYRNLAAKMESD 551
               +      +   +V  LR++L +   R E L    KE+ A IE+  S+   +  +  S 
Sbjct:   719 HGDTLQMNGIQLEEVSKLREELEDWRNRHEQLQGQLKEKDAVIENLKSLQVEMGTEQSSQ 778

Query:   552 LKSLSDAYNSLE--------QTNFHLEK-EVKALKSGGSSVSSPD--VEAIKAEAREEAQ 600
             L S     +S E        +T   L+  E+  L++    + + +  ++     +   A 
Sbjct:   779 LSSSGGMEHSAELQKELELLRTQIQLQAAEISKLQTENQKLQATNTAIDPALGASGAVAS 838

Query:   601 KESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVE 636
             + SE E   LL  LG+ QS+V+ LS     L + ++
Sbjct:   839 RSSEKE-GRLLQELGELQSEVKALSEEKASLQQQLD 873

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F5GYR8 USO1 "General vesicular transport factor p115" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 3.6e-16, P = 3.6e-16
 Identities = 118/472 (25%), Positives = 206/472 (43%)

Query:   177 NMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAA 236
             ++S G +L  GL   +S   L   C AA  L+H L +N   KE++LR++L     S+G  
Sbjct:   420 SVSAGQLLCGGLFSTDS---LSNWC-AAVALAHALQENATQKEQLLRVQLAT---SIG-- 470

Query:   237 EPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTY 296
              P +  + +   + S     D  G     ++ +L LL TWL++CP AV  FL +  ++ +
Sbjct:   471 NPPVSLLQQCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPF 530

Query:   297 LL-ELVSN-PSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKF 354
             L  ++  N        +GL A+LLG  + +N +S        +   I +++G  ++  K 
Sbjct:   531 LTGQIAENLGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKL 590

Query:   355 DEMQKSFLFSSAKPTQALKPLTRSTAASMAXXXXXXXXXXXXKENEDHPLL--SSMFDKH 412
               + K  L+S A      KP     +                 E      +  SS  DK 
Sbjct:   591 GFISKHELYSRASQ----KPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKK 646

Query:   413 FVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEI 472
               ++ K+LE    +NIV  Y     E  +   EL Q+     K   ++L+  V +Q S+I
Sbjct:   647 EEEVKKTLEQ--HDNIVTHYKNMIREQDLQLEELRQQVSTL-KCQNEQLQTAVTQQVSQI 703

Query:   473 QKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKA 532
             Q+   +   L  +L K      S SE      +   ++  LR+++ E  +  E+L+   +
Sbjct:   704 QQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQ---S 760

Query:   533 QIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTN--FHLEKEVKALKSGGSSVSSPDVEA 590
             Q+    SM  N+ +   S     S A  S   +     L++E+  LKS  +S  S ++  
Sbjct:   761 QLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNS-QSVEITK 819

Query:   591 IKAEAREEAQKESEAELNDLLVCLGQEQS----KVEKLSARLLELGEDVEKL 638
             ++ E +E  QK +EA    + V  G+ ++    K   +  RL  L ++ ++L
Sbjct:   820 LQTEKQELLQK-TEAFAKSVEV-QGETETIIATKTTDVEGRLSALLQETKEL 869

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0045056 "transcytosis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

DICTYBASE|DDB_G0275331 DDB_G0275331 "general vesicular transport factor p115" [Dictyostelium discoideum (taxid:44689)]

 Score = 208 (78.3 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
 Identities = 66/224 (29%), Positives = 116/224 (51%)

Query:   177 NMSFGSMLIRGLTLGES--DGD-LEVCCR--AASVLSHILMDNLQCKERVLRIELEAPMP 231
             N+S G  L + L   E+   G   ++ C   A+ VL ++L D++  KE++L++ LE P  
Sbjct:   454 NLSIGQHLYKALFSWETPIQGKPFDISCFWFASVVLLYMLKDSIHTKEQLLKMPLEVPKS 513

Query:   232 SLGAAEP--LMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLD 289
             S  A +P  L  +++  L +A+  +  D T K G     +LKLL  WLAD P ++  F D
Sbjct:   514 SAEAQQPVTLFTKLMACL-MATKKQDIDPTIKIG-----LLKLLAVWLADSPKSIKIFFD 567

Query:   290 SRPHLTYLLELVSNP----SATVCT-------RGLAAVLLGECVIYNKSSDTGRDAFSIV 338
                HL +L+E++ +P    S+TV         +GL  ++LG C  Y       ++  ++ 
Sbjct:   568 GNQHLAFLVEIILSPLPTGSSTVGNPNLHSHIQGLCTLILGICAQYMDDETAEKNKSNLS 627

Query:   339 DSISQKVGLTSYFLKFDEMQKSFLFSSAKP-TQALKPLTRSTAA 381
               I+ ++ + ++  K D ++KS  F++A+   ++  P   STAA
Sbjct:   628 SIINHRITVNTFKEKLDSLRKSDSFTNAEQGEESFDP--SSTAA 669

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F5GZ76 USO1 "General vesicular transport factor p115" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 119/473 (25%), Positives = 207/473 (43%)

Query:   177 NMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAA 236
             ++S G +L  GL   +S   L   C AA  L+H L +N   KE++LR++L     S+G  
Sbjct:   253 SVSAGQLLCGGLFSTDS---LSNWC-AAVALAHALQENATQKEQLLRVQLAT---SIGNP 305

Query:   237 E-PLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLT 295
                L+ +    L+  S ++T+ G          +L LL TWL++CP AV  FL +  ++ 
Sbjct:   306 PVSLLQQCTNILSQGSKIQTRVG----------LLMLLCTWLSNCPIAVTHFLHNSANVP 355

Query:   296 YLL-ELVSN-PSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLK 353
             +L  ++  N        +GL A+LLG  + +N +S        +   I +++G  ++  K
Sbjct:   356 FLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEK 415

Query:   354 FDEMQKSFLFSSAKPTQALKPLTRSTAASMAXXXXXXXXXXXXKENEDHPLL--SSMFDK 411
                + K  L+S A      KP     +                 E      +  SS  DK
Sbjct:   416 LGFISKHELYSRASQ----KPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDK 471

Query:   412 HFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
                ++ K+LE    +NIV  Y     E  +   EL Q+     K   ++L+  V +Q S+
Sbjct:   472 KEEEVKKTLEQ--HDNIVTHYKNMIREQDLQLEELRQQVSTL-KCQNEQLQTAVTQQVSQ 528

Query:   472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531
             IQ+   +   L  +L K      S SE      +   ++  LR+++ E  +  E+L+   
Sbjct:   529 IQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQ--- 585

Query:   532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTN--FHLEKEVKALKSGGSSVSSPDVE 589
             +Q+    SM  N+ +   S     S A  S   +     L++E+  LKS  +S  S ++ 
Sbjct:   586 SQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNS-QSVEIT 644

Query:   590 AIKAEAREEAQKESEAELNDLLVCLGQEQS----KVEKLSARLLELGEDVEKL 638
              ++ E +E  QK +EA    + V  G+ ++    K   +  RL  L ++ ++L
Sbjct:   645 KLQTEKQELLQK-TEAFAKSVEV-QGETETIIATKTTDVEGRLSALLQETKEL 695

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

UNIPROTKB|F5H4X1 USO1 "General vesicular transport factor p115" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 4.4e-16, P = 4.4e-16
 Identities = 119/473 (25%), Positives = 207/473 (43%)

Query:   177 NMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAA 236
             ++S G +L  GL   +S   L   C AA  L+H L +N   KE++LR++L     S+G  
Sbjct:   403 SVSAGQLLCGGLFSTDS---LSNWC-AAVALAHALQENATQKEQLLRVQLAT---SIGNP 455

Query:   237 E-PLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLT 295
                L+ +    L+  S ++T+ G          +L LL TWL++CP AV  FL +  ++ 
Sbjct:   456 PVSLLQQCTNILSQGSKIQTRVG----------LLMLLCTWLSNCPIAVTHFLHNSANVP 505

Query:   296 YLL-ELVSN-PSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLK 353
             +L  ++  N        +GL A+LLG  + +N +S        +   I +++G  ++  K
Sbjct:   506 FLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEK 565

Query:   354 FDEMQKSFLFSSAKPTQALKPLTRSTAASMAXXXXXXXXXXXXKENEDHPLL--SSMFDK 411
                + K  L+S A      KP     +                 E      +  SS  DK
Sbjct:   566 LGFISKHELYSRASQ----KPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDK 621

Query:   412 HFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
                ++ K+LE    +NIV  Y     E  +   EL Q+     K   ++L+  V +Q S+
Sbjct:   622 KEEEVKKTLEQ--HDNIVTHYKNMIREQDLQLEELRQQVSTL-KCQNEQLQTAVTQQVSQ 678

Query:   472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531
             IQ+   +   L  +L K      S SE      +   ++  LR+++ E  +  E+L+   
Sbjct:   679 IQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQ--- 735

Query:   532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTN--FHLEKEVKALKSGGSSVSSPDVE 589
             +Q+    SM  N+ +   S     S A  S   +     L++E+  LKS  +S  S ++ 
Sbjct:   736 SQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNS-QSVEIT 794

Query:   590 AIKAEAREEAQKESEAELNDLLVCLGQEQS----KVEKLSARLLELGEDVEKL 638
              ++ E +E  QK +EA    + V  G+ ++    K   +  RL  L ++ ++L
Sbjct:   795 KLQTEKQELLQK-TEAFAKSVEV-QGETETIIATKTTDVEGRLSALLQETKEL 845

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

UNIPROTKB|O60763 USO1 "General vesicular transport factor p115" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 119/473 (25%), Positives = 207/473 (43%)

Query:   177 NMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAA 236
             ++S G +L  GL   +S   L   C AA  L+H L +N   KE++LR++L     S+G  
Sbjct:   418 SVSAGQLLCGGLFSTDS---LSNWC-AAVALAHALQENATQKEQLLRVQLAT---SIGNP 470

Query:   237 E-PLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLT 295
                L+ +    L+  S ++T+ G          +L LL TWL++CP AV  FL +  ++ 
Sbjct:   471 PVSLLQQCTNILSQGSKIQTRVG----------LLMLLCTWLSNCPIAVTHFLHNSANVP 520

Query:   296 YLL-ELVSN-PSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLK 353
             +L  ++  N        +GL A+LLG  + +N +S        +   I +++G  ++  K
Sbjct:   521 FLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEK 580

Query:   354 FDEMQKSFLFSSAKPTQALKPLTRSTAASMAXXXXXXXXXXXXKENEDHPLL--SSMFDK 411
                + K  L+S A      KP     +                 E      +  SS  DK
Sbjct:   581 LGFISKHELYSRASQ----KPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDK 636

Query:   412 HFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
                ++ K+LE    +NIV  Y     E  +   EL Q+     K   ++L+  V +Q S+
Sbjct:   637 KEEEVKKTLEQ--HDNIVTHYKNMIREQDLQLEELRQQVSTL-KCQNEQLQTAVTQQVSQ 693

Query:   472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531
             IQ+   +   L  +L K      S SE      +   ++  LR+++ E  +  E+L+   
Sbjct:   694 IQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQ--- 750

Query:   532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTN--FHLEKEVKALKSGGSSVSSPDVE 589
             +Q+    SM  N+ +   S     S A  S   +     L++E+  LKS  +S  S ++ 
Sbjct:   751 SQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNS-QSVEIT 809

Query:   590 AIKAEAREEAQKESEAELNDLLVCLGQEQS----KVEKLSARLLELGEDVEKL 638
              ++ E +E  QK +EA    + V  G+ ++    K   +  RL  L ++ ++L
Sbjct:   810 KLQTEKQELLQK-TEAFAKSVEV-QGETETIIATKTTDVEGRLSALLQETKEL 860

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0F9L4	GOGC6_ARATH	No assigned EC number	0.6851	0.9802	0.7045	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	657
pfam04871	136	pfam04871, Uso1_p115_C, Uso1 / p115 like vesicle t	6e-26
pfam04869	308	pfam04869, Uso1_p115_head, Uso1 / p115 like vesicl	2e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001

>gnl|CDD|218301 pfam04871, Uso1_p115_C, Uso1 / p115 like vesicle tethering protein, C terminal region

 Score =  103 bits (257), Expect = 6e-26
 Identities = 62/136 (45%), Positives = 83/136 (61%), Gaps = 12/136 (8%)

Query: 532 AQIESDSSMYRNLAAK-MESDLKSLSDAYNSLEQTNFHLEKEVKALKS---------GGS 581
           A+IE ++   +NLAAK +E + + LSDAYNSLEQ N  LE E KALK            S
Sbjct: 1   AKIEVEAESEQNLAAKALEQETRLLSDAYNSLEQVNKALENEEKALKEARLTRPTCLEKS 60

Query: 582 SVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDV--EKLL 639
             ++PD+EA K +  EEA KES+ E +DLLV L  ++ KV K   +L +LG  V  ++ L
Sbjct: 61  FSTTPDLEAEKEKLDEEALKESQKEQDDLLVLLADQEEKVTKYKEKLKDLGVPVSNDEPL 120

Query: 640 EGIGDDMGLPEDDEEE 655
           E IGD+    E+DEEE
Sbjct: 121 EAIGDESEDEEEDEEE 136

Also known as General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of the acidic C-terminus, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another. Length = 136

>gnl|CDD|218299 pfam04869, Uso1_p115_head, Uso1 / p115 like vesicle tethering protein, head region

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 69/327 (21%)

Query: 113 PQVEAALNSILRIILRTSSMQEF---LAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSH 169
           P + A LN +L      +S+Q F    AA     ++   N +GQ     T IP       
Sbjct: 34  PVIVALLNWMLNE----NSVQPFDLRCAALYCLKAYLYNNEEGQLHFLKTQIPS----YA 85

Query: 170 APLEEDVNMSFGSMLIRGLTLGESDGDLE---VCCRAASVLSHILMDNLQCKERVLRIEL 226
           +  +   N      ++ GL   ++D  L+       AA +L H+L+DN + KE + R+  
Sbjct: 86  SSTDPSAN------ILTGLLDYDADLSLDPYKNWF-AAVLLMHLLIDNDEAKELLRRVTE 138

Query: 227 ------EAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADC 280
                 E P+ S+     L         L ++++ +D     GY     L LL+TWL + 
Sbjct: 139 GDESSGEEPVTSIQTVSEL---------LITTLRNEDPRISIGY-----LMLLITWLYED 184

Query: 281 PNAVHCFLDSRPHLTYLLELV-SNPSATVCTRGLAAVLLGECVIYN-KSSDTGRDAFSIV 338
           P+AV+ FL    ++  LL     + S  V  +GL A+LLG C  ++ K S   R    + 
Sbjct: 185 PDAVNDFLSESSNVQSLLAFSNESSSEDVLVQGLCAMLLGICYEFSTKDSPIPRA--DLY 242

Query: 339 DSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKE 398
             + +++G  +Y  K  ++++  LF   +  Q L P +  T   +               
Sbjct: 243 QLLVKRIGRDNYISKLKQLREHELFRDFELPQQLNPTSDETGPDV--------------- 287

Query: 399 NEDHPLLSSMFDKHFVDIIKSLESSIR 425
                     FD  FV++ K     I+
Sbjct: 288 ---------YFDFEFVELFKDNFYRIQ 305

Also known as General vesicular transport factor, Transcytosis associated protein (TAP) and Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of part of the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering. The N-terminal part of the head region, not within this family, contains context-detected Armadillo/beta-catenin-like repeats (pfam00514). Length = 308

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 16/195 (8%)

Query: 465 VEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRL 524
           +E+  SE+++L      L EEL ++  +      + +   L R ++E L  +L E  +RL
Sbjct: 269 IEELKSELEELREELEELQEELLELKEEIEELEGEIS---LLRERLEELENELEELEERL 325

Query: 525 EILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVS 584
           E LKE+   ++ +      L  ++E  L  L +A   LE+    L +E++ L        
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELF------- 378

Query: 585 SPDVEAIKAEARE--EAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGI 642
               EA++ E  E      E   EL +L   +   + ++E+LS RL +L E++++L   +
Sbjct: 379 ----EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 643 GDDMGLPEDDEEEED 657
            +     E+  EE +
Sbjct: 435 EELQTELEELNEELE 449

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 49/207 (23%), Positives = 98/207 (47%), Gaps = 15/207 (7%)

Query: 459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIGG--DGASQSEQRASGALDRVQVETLRKD 516
           +   A +++    ++ L    ++L  EL +I    D  SQ    AS      ++  + K+
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR-----KIGEIEKE 724

Query: 517 LHEASQRLEILKEEKAQIESD-SSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKA 575
           + +  Q  E LKE   ++E D SS+ + +    +S+LK L      LE+    LE+ +  
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENV-KSELKELEARIEELEEDLHKLEEALND 783

Query: 576 LKSGGSSVSSPDVEAIKAEAREEAQK------ESEAELNDLLVCLGQEQSKVEKLSARLL 629
           L++  S    P+++A  ++  EE  +      E E +LN L +     + ++++L  + +
Sbjct: 784 LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843

Query: 630 ELGEDVEKLLEGIGDDMGLPEDDEEEE 656
           +L E ++ + + I +  G  E+ EEE 
Sbjct: 844 DLKEQIKSIEKEIENLNGKKEELEEEL 870

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 5/172 (2%)

Query: 471 EIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEE 530
           ++++L      L EEL+++  +     E+         ++E L+ +L E  + LE L+EE
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAE---KEIEELKSELEELREELEELQEE 289

Query: 531 KAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEA 590
             +++ +        + +   L+ L +    LE+    L+++++ALK       +   E 
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349

Query: 591 IKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGI 642
            +  A  E  KE   E    L  L + +   E L   L EL  ++ ++   +
Sbjct: 350 EQLLAELEEAKEELEEKLSAL--LEELEELFEALREELAELEAELAEIRNEL 399

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 10/192 (5%)

Query: 444 AELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASG 503
            ELE+   ES ++ + +LK  +E+   + Q L      L EEL +      +   +  S 
Sbjct: 761 EELEEEL-ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES- 818

Query: 504 ALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLE 563
                + E L +++ E  + +E L+E+  ++E +         +++ +L+ L      LE
Sbjct: 819 --LEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876

Query: 564 QTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEK 623
                LE+E + L+          +E+  AE +EE +K     L +L   L + + ++ +
Sbjct: 877 DELKELEEEKEELEEELRE-----LESELAELKEEIEK-LRERLEELEAKLERLEVELPE 930

Query: 624 LSARLLELGEDV 635
           L   L E  ED 
Sbjct: 931 LEEELEEEYEDT 942

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 19/223 (8%)

Query: 417 IKSLESSI--RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQK 474
           ++ L+  I   +  ++       E+  + AELE+   E ++    +L A +E+     + 
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEE----KLSALLEELEELFEA 380

Query: 475 LLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQI 534
           L    A L  ELA+I          R      + ++E+L + L   S+RLE LKEE  ++
Sbjct: 381 LREELAELEAELAEI----------RNELEELKREIESLEERLERLSERLEDLKEELKEL 430

Query: 535 ESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE 594
           E++    +    ++  +L+ L +    L      LE+E+  L+     +           
Sbjct: 431 EAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Query: 595 AREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEK 637
            R EA++ +   +  +L      +S +  +   + EL +  EK
Sbjct: 491 DRLEAEQRASQGVRAVLE---ALESGLPGVYGPVAELIKVKEK 530

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	657
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	100.0
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	100.0
PF04871	136	Uso1_p115_C: Uso1 / p115 like vesicle tethering pr	99.73
PRK09039	343	hypothetical protein; Validated	97.23
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.78
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.69
PRK11637	428	AmiB activator; Provisional	96.56
PRK11637	428	AmiB activator; Provisional	96.39
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.97
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.9
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.76
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.72
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.7
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.69
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.69
PHA02562	562	46 endonuclease subunit; Provisional	95.65
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.62
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.61
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.5
PRK09039	343	hypothetical protein; Validated	95.5
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.43
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.32
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.23
PRK02224	880	chromosome segregation protein; Provisional	95.12
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.08
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	95.02
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.89
PRK03918	880	chromosome segregation protein; Provisional	94.88
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	94.87
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	94.78
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.74
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.7
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.69
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.57
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.56
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.53
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	94.52
COG4372	499	Uncharacterized protein conserved in bacteria with	94.49
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	94.46
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.44
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.42
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.36
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	94.26
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.11
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.99
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.94
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.9
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.88
PRK02224	880	chromosome segregation protein; Provisional	93.86
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	93.78
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.69
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.59
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.59
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.56
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.41
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	93.41
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.38
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.27
PRK03918	880	chromosome segregation protein; Provisional	93.23
PRK10884	206	SH3 domain-containing protein; Provisional	93.05
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.05
KOG0933	1174	consensus Structural maintenance of chromosome pro	92.93
PHA02562	562	46 endonuclease subunit; Provisional	92.88
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.84
COG4026	290	Uncharacterized protein containing TOPRIM domain,	92.82
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.79
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	92.7
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.66
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	92.62
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.61
PRK10884	206	SH3 domain-containing protein; Provisional	92.61
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	92.49
PRK04863	1486	mukB cell division protein MukB; Provisional	92.32
PF04871	136	Uso1_p115_C: Uso1 / p115 like vesicle tethering pr	92.31
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.16
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.11
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.0
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.98
PRK04863	1486	mukB cell division protein MukB; Provisional	91.96
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.94
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	91.86
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.69
KOG0933	1174	consensus Structural maintenance of chromosome pro	91.4
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.39
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.38
PRK04778	569	septation ring formation regulator EzrA; Provision	91.21
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	91.13
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	91.04
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	90.97
KOG4673	961	consensus Transcription factor TMF, TATA element m	90.86
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	90.81
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.69
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	90.66
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	90.54
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.44
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.08
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	90.03
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.95
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.89
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	89.81
COG4942	420	Membrane-bound metallopeptidase [Cell division and	89.75
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.74
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	89.65
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.63
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	89.57
PRK04778	569	septation ring formation regulator EzrA; Provision	89.5
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.42
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	89.33
KOG2991	330	consensus Splicing regulator [RNA processing and m	89.21
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	89.19
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	89.14
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	89.13
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	89.1
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	89.04
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	88.97
PRK11281	1113	hypothetical protein; Provisional	88.96
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.91
COG2433	652	Uncharacterized conserved protein [Function unknow	88.88
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.84
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	88.83
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.72
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.7
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.7
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.33
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.28
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.19
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	88.16
PF00038	312	Filament: Intermediate filament protein; InterPro:	88.03
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	87.81
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	87.73
KOG0971	1243	consensus Microtubule-associated protein dynactin	87.71
PRK10698	222	phage shock protein PspA; Provisional	87.42
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	87.3
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	87.06
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	87.03
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	86.98
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	86.93
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	86.79
KOG3647	338	consensus Predicted coiled-coil protein [General f	86.74
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	86.62
KOG0963	629	consensus Transcription factor/CCAAT displacement	86.44
PRK01156	895	chromosome segregation protein; Provisional	86.4
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	86.38
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	86.19
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	86.16
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	86.04
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	85.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.71
KOG0249	916	consensus LAR-interacting protein and related prot	85.68
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	85.24
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	85.05
PF13514	1111	AAA_27: AAA domain	84.94
COG4372	499	Uncharacterized protein conserved in bacteria with	84.61
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	84.16
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	83.74
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	83.58
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.48
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	83.16
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	83.04
KOG4673	961	consensus Transcription factor TMF, TATA element m	82.91
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	82.8
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.57
KOG0288	459	consensus WD40 repeat protein TipD [General functi	82.47
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.33
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	82.12
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	82.01
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	82.01
PRK10929	1109	putative mechanosensitive channel protein; Provisi	81.89
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	81.86
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	81.71
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	81.67
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	81.5
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	81.32
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	81.22
PRK00409	782	recombination and DNA strand exchange inhibitor pr	80.92
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	80.91
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	80.79
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	80.55
PRK11281	1113	hypothetical protein; Provisional	80.46
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.43
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	80.38
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	80.21

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-93  Score=787.24  Aligned_cols=421  Identities=23%  Similarity=0.361  Sum_probs=362.9

Q ss_pred             hhHhhhhc----CCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchH
Q 006200            6 LISILKLR----GSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVA   81 (657)
Q Consensus         6 ~~~~l~~~----~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~   81 (657)
                      |..||..+    |+.++|++||++|++++|+|||.||+|||+++     ++++||++|.++++|..||.+.| ++++|++
T Consensus       259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~-----~~~q~qk~l~ss~ll~~Lc~il~-~~~vp~d  332 (970)
T KOG0946|consen  259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSS-----ITHQNQKALVSSHLLDVLCTILM-HPGVPAD  332 (970)
T ss_pred             HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHcchHHHHHHHHc-CCCCcHh
Confidence            44555665    58899999999999999999999999999865     47899999999999999999999 5679999


Q ss_pred             hHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCch-hHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200           82 VRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSM-QEFLAADRIFNSFCEKNPDGQAMLTSTL  160 (657)
Q Consensus        82 Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~-~~r~AA~~cf~ayl~~N~~~q~~L~~tl  160 (657)
                      |++++|+|+|+|||||+.||++|+++++|+.|+|+|+|++|+|+|.++..+ .+|||+.|||+||||+|.++|..++.|+
T Consensus       333 IltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tl  412 (970)
T KOG0946|consen  333 ILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTL  412 (970)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            999999999999999999999999999999887899999999999877765 7899999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchH
Q 006200          161 IPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM  240 (657)
Q Consensus       161 ~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll  240 (657)
                      +|++....      +.++++|.++|.++++    .|||..||+|++|||+|.+|.+.|++++||++..++  +.+|++++
T Consensus       413 lp~~~nst------~Nsl~ag~l~~~~l~s----~d~~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~--gn~p~tlL  480 (970)
T KOG0946|consen  413 LPSSTNST------SNSLSAGQLLLVGLSS----TDSLDNWFTAVILMHLLQDNDQLKEELLRVPLAVDT--GNDPDTLL  480 (970)
T ss_pred             hhhhcccc------ccchhhhhHHHHhhcc----chHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccC--CCCchHHH
Confidence            99876532      2368999999999987    456899999999999999999999999999999886  67899998


Q ss_pred             HHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCC--CC-chHhHHHHHHH
Q 006200          241 HRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNP--SA-TVCTRGLAAVL  317 (657)
Q Consensus       241 ~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~--~~-~~lVqGL~A~L  317 (657)
                      .++++++.+.+..|        ..+++|||||||+|||+||+||+|||++.++++||+.++.++  ++ +.+||||||||
T Consensus       481 ~~~ct~~~~~~t~r--------~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~l  552 (970)
T KOG0946|consen  481 FQQCTNLKLQGTSR--------HQTRVGLLMLLITWLYGCPDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAFL  552 (970)
T ss_pred             HHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHcCCcHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            88666655333233        368899999999999999999999999999999999999665  44 89999999999


Q ss_pred             hhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhcccccccCCCccccccchhhhhhhhhhhhcccccccCCC
Q 006200          318 LGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDK  397 (657)
Q Consensus       318 LG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~~f~~~~~~~~~~~l~r~~~~~~~~~~~~~~~d~~~~  397 (657)
                      ||+||+||+.+.| +.+.+++++|+||||+|+|++||.+|++|++|+.+..  ..+|...                    
T Consensus       553 Lgl~~~fn~~s~p-~~r~~~~~lItkrvGke~f~srL~~lsr~e~ysra~~--kqq~~l~--------------------  609 (970)
T KOG0946|consen  553 LGLCYYFNDNSSP-VSRSDVYQLITKRVGKENFISRLQRLSRHELYSRASM--KQQPQLK--------------------  609 (970)
T ss_pred             HHHHHHcCcccCc-ccHHHHHHHHHHHHhHHHHHHHHHHhhHhHHHHHHhh--ccCccCC--------------------
Confidence            9999999998877 8899999999999999999999999999999997533  2232110                    


Q ss_pred             CcCCCCcccccccHHHHHHHHHhHHHHHHhhhhhcCCCCCcccc--chhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Q 006200          398 ENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAV--VPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKL  475 (657)
Q Consensus       398 ~~~~~~l~~v~FD~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~--~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L  475 (657)
                           +.|++|||++|+++||+++++|.+++   +++|+.+.-.  ....++     .-...+..||..|+++|-+|+.+
T Consensus       610 -----~~~k~~lD~~f~kL~kele~~i~k~l---s~~~eee~~~~~~~k~~e-----~l~~~~~kyK~lI~~lD~~~e~l  676 (970)
T KOG0946|consen  610 -----SNTKLALDFEFKKLFKELEGLIAKLL---SSKTEEEEQTQLAEKYHE-----ELDDIQQKYKGLIRELDYQIENL  676 (970)
T ss_pred             -----CCchhhhhHHHHHHHHHHHHHHHHHh---cCCCccchhhHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHH
Confidence                 12489999999999999999999999   5777765421  111222     23557889999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 006200          476 LGRNATLAEELAK  488 (657)
Q Consensus       476 ~~~~~~L~~~l~~  488 (657)
                      ++.+..|+-+.++
T Consensus       677 kQ~~~~l~~e~ee  689 (970)
T KOG0946|consen  677 KQMEKELQVENEE  689 (970)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988877766543

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=100.00  E-value=1.1e-75  Score=617.71  Aligned_cols=293  Identities=30%  Similarity=0.414  Sum_probs=217.0

Q ss_pred             cChhhHHHhhccccCC------------CCccchHHHHHHHHHhccCchh---HHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200           96 AHPKNRDVLASKVLGE------------EPQVEAALNSILRIILRTSSMQ---EFLAADRIFNSFCEKNPDGQAMLTSTL  160 (657)
Q Consensus        96 gn~~nQ~~fa~~~vp~------------~p~~~pal~~LL~~~L~~~~~~---~r~AA~~cf~ayl~~N~~~q~~L~~tl  160 (657)
                      ||+.||++|++++||+            .++++||+++||+|||+.+++|   .|+||+|||||||++|+++|+.+++|+
T Consensus         1 gN~~~Q~~Fa~~~vp~~dp~~~~~~~~~~~~~~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~   80 (312)
T PF04869_consen    1 GNATNQEEFAQIDVPYFDPSLPGQVQAPSDPPVPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTL   80 (312)
T ss_dssp             --HHHHHHHHC-EE-------------SSSS-EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTT
T ss_pred             CCHHHHHHHhcceeecccccccccccCCCCCCccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8999999999999963            1346999999999999999765   469999999999999999999888898


Q ss_pred             cCCCCCCCCCCCcccccCChhHHHhhhcccCCC--CcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcc
Q 006200          161 IPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGES--DGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEP  238 (657)
Q Consensus       161 ~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~--~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~  238 (657)
                      +|.+.+.++        .+.+++||++|+++++  +.|||++||||++|+|+|++|+++|+++|+|+ +++++++++|++
T Consensus        81 i~~~~~~~~--------~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~-~~~~~~ge~~vt  151 (312)
T PF04869_consen   81 IPSYASGNS--------DDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEAKEQALRVT-EGDESSGEEPVT  151 (312)
T ss_dssp             SSTT--SS----------SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT---EE--STTS--EE
T ss_pred             hccCCCCcc--------cchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHHHHHHHccc-CCCCCCCCCccc
Confidence            887755321        3445559999997765  67999999999999999999999999999998 677666888899


Q ss_pred             hHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCC-CCchHhHHHHHHH
Q 006200          239 LMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNP-SATVCTRGLAAVL  317 (657)
Q Consensus       239 ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~-~~~~lVqGL~A~L  317 (657)
                      ++|+|..+|. ++..++.|     .++++|||||||+||||||+||+|||++++||++|++++.+. +++++||||||||
T Consensus       152 liq~v~~lL~-~~l~~~~d-----~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~L  225 (312)
T PF04869_consen  152 LIQTVSELLI-ASLRRNSD-----PRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFL  225 (312)
T ss_dssp             HHHHHHHHTT-T----T-------HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hhhhcCCc-----hhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHH
Confidence            9999988877 44444555     577888999999999999999999999999999999998655 8899999999999


Q ss_pred             hhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhcccccccCC-CccccccchhhhhhhhhhhhcccccccCC
Q 006200          318 LGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAK-PTQALKPLTRSTAASMAEIEDIDDSDLSD  396 (657)
Q Consensus       318 LG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~~f~~~~-~~~~~~~l~r~~~~~~~~~~~~~~~d~~~  396 (657)
                      |||||+|| +.+++++|++|+++|++|||+|+|++||++||+||+|+++. +++...+.                     
T Consensus       226 LGicyef~-~~~s~~~R~~l~~ll~~riG~d~y~~kl~~lr~~~~f~~~~~~~~~~~~~---------------------  283 (312)
T PF04869_consen  226 LGICYEFS-TKDSPIPRATLHPLLTKRIGRDNYFSKLEQLRKSPLFRDAEKPPQLNPSS---------------------  283 (312)
T ss_dssp             HHHHHHT--S-SCCC-HHHHHHHHHHHT-HHHHHHHHHCCCCSTTHHHHTT-SS---SS---------------------
T ss_pred             HHHHHHhc-CCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHhcChhhhccccCCCCCCCC---------------------
Confidence            99999999 55567999999999999999999999999999999999876 33322110                     


Q ss_pred             CCcCCCCcccccccHHHHHHHHHhHHHHHHhh
Q 006200          397 KENEDHPLLSSMFDKHFVDIIKSLESSIRENI  428 (657)
Q Consensus       397 ~~~~~~~l~~v~FD~~Fv~f~K~n~~~I~~ai  428 (657)
                         ++.++|++||||+||+|||+||+||+|+|
T Consensus       284 ---~~~~lp~v~FD~~Fv~f~K~n~~rI~rai  312 (312)
T PF04869_consen  284 ---DDSGLPDVYFDWEFVEFFKDNYSRIQRAI  312 (312)
T ss_dssp             ---GG----G----HHHHHHHHHHHHHHHHHC
T ss_pred             ---CCccceeeeccHHHHHHHHHhHHHHHHhC
Confidence               13457899999999999999999999986

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein

Probab=99.73  E-value=2.1e-17  Score=155.63  Aligned_cols=67  Identities=45%  Similarity=0.591  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhhhccCCCCCCCCCCCccc
Q 006200          589 EAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEE  655 (657)
Q Consensus       589 ~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~~~~~~~~~~~~~~~~~~  655 (657)
                      +..++..+++++++.++||+||||||+|+++|+++||.||++||++||+|+++++++|+++||++++
T Consensus        68 ~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSddE~~~d~~dd~edd~~de  134 (136)
T PF04871_consen   68 EAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDDEDSEDDEDDDEDDDEDE  134 (136)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCCccccccCCCCCCccCCC
Confidence            3334444556778999999999999999999999999999999999999997744333333333333

This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane

>PRK09039 hypothetical protein; Validated

Probab=97.23  E-value=0.017  Score=62.91  Aligned_cols=154  Identities=16%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          461 LKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSM  540 (657)
Q Consensus       461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~  540 (657)
                      |.+.|..++++|.+|+.+++.|.+-+.=..+          .....+.++.+|+.+++.+++..+.|+...+........
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~----------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~  113 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAELADLLSLERQ----------GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA  113 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Confidence            6788999999999999999998876532221          111234455555555555555444444433322222334


Q ss_pred             HHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH--HHHHHHHHHHHhHhHHHHHhhhhh
Q 006200          541 YRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE--AREEAQKESEAELNDLLVCLGQEQ  618 (657)
Q Consensus       541 ~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~--~~~e~~~~~~~e~~dLl~ll~d~~  618 (657)
                      .+..+..++.+|......|++...++.+|.+|+.+||.++..- +..|++++++  +....+..++++++..   +++..
T Consensus       114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l-e~~L~~ae~~~~~~~~~i~~L~~~L~~a---~~~~~  189 (343)
T PRK09039        114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL-EAALDASEKRDRESQAKIADLGRRLNVA---LAQRV  189 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            4555566666666666666666666667777777776543200 0112222221  2333345555554444   34455


Q ss_pred             hhHHHHHHHH
Q 006200          619 SKVEKLSARL  628 (657)
Q Consensus       619 ~K~~~~k~~L  628 (657)
                      ..+.+||..+
T Consensus       190 ~~l~~~~~~~  199 (343)
T PRK09039        190 QELNRYRSEF  199 (343)
T ss_pred             HHHHHhHHHH
Confidence            6667776644

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.78  E-value=0.12  Score=61.16  Aligned_cols=174  Identities=22%  Similarity=0.318  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcch----------hhhhhccccHHHHHHH----HHHHHHH
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQS----------EQRASGALDRVQVETL----RKDLHEA  520 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~----------~~~~~~~~~~~q~e~L----~~~L~~~  520 (657)
                      .+-.++|.-.++.-.+.+.+|.-++..|+++.+..|++....+          .+|-+.+.  +.+..|    +...+.+
T Consensus       324 EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal--VrLRDlsA~ek~d~qK~  401 (1243)
T KOG0971|consen  324 EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL--VRLRDLSASEKQDHQKL  401 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHHHHH
Confidence            4456777777777778888888888888888876665442111          11111100  000000    1111112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH----------HHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHH
Q 006200          521 SQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSD----------AYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEA  590 (657)
Q Consensus       521 ~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~----------~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~  590 (657)
                      .+..|..+.|+..++.-.+.++.....+|+-+..|+.          .+.+|--.+..+|+.++.|++.++     |+|+
T Consensus       402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~-----dlEa  476 (1243)
T KOG0971|consen  402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVG-----DLEA  476 (1243)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHH-----HHHH
Confidence            2333333334444444444444444444444444442          223333333334444444443211     3333


Q ss_pred             HHH------H--------------HHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchh
Q 006200          591 IKA------E--------------AREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDV  635 (657)
Q Consensus       591 ~~~------~--------------~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v  635 (657)
                      ++.      +              ...-++++++++.++-+.-+-|.+-.+.|||.++..|..-.
T Consensus       477 lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdql  541 (1243)
T KOG0971|consen  477 LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQL  541 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            221      0              11134688899999999999999999999999887775433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.69  E-value=0.079  Score=62.81  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      ..+.+.+|..-|++-..+|+..++.=..|..++
T Consensus       416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqi  448 (697)
T PF09726_consen  416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQI  448 (697)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            455667777777777777776666544444443

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=96.56  E-value=0.23  Score=55.71  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      +++++..|+++.++|++++.+...+..++
T Consensus        49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l   77 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQQQQRASLLAQL   77 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666665555555555544

>PRK11637 AmiB activator; Provisional

Probab=96.39  E-value=0.34  Score=54.27  Aligned_cols=28  Identities=7%  Similarity=-0.064  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          460 RLKAFVEKQCSEIQKLLGRNATLAEELA  487 (657)
Q Consensus       460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~  487 (657)
                      .++..++...++|+++++++..+..++.
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~   71 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRA   71 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777777777777777777666553

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.97  E-value=0.44  Score=58.23  Aligned_cols=72  Identities=22%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHH------HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHH--------------hHHH
Q 006200          507 RVQVETLRKDLHEAS------QRLEILKEEK--------AQIESDSSMYRNLAAKMESDLKS--------------LSDA  558 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~------~~~e~l~~e~--------~~~eae~~~~~~~a~~le~~l~~--------------ls~~  558 (657)
                      +.+++.+++++++++      ++++.+++.+        +..+++++...+...+++.++++              +...
T Consensus       864 ~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~  943 (1293)
T KOG0996|consen  864 EEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKK  943 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHH
Confidence            455666666666662      3333333332        33344444445555555444444              4455


Q ss_pred             HhHHHHHhHhHHHHHHHHHc
Q 006200          559 YNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       559 ~~~Le~~~~~le~e~~~lr~  578 (657)
                      ++.++.++...++|++.|.+
T Consensus       944 l~~le~~~~~~e~e~~~L~e  963 (1293)
T KOG0996|consen  944 LSELEREIEDTEKELDDLTE  963 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66667777777777777765

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.90  E-value=0.56  Score=57.14  Aligned_cols=123  Identities=17%  Similarity=0.295  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-h---hhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQ-S---EQRASGALDRVQVETLRKDLHEASQRLEILKEE  530 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~-~---~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e  530 (657)
                      .+-++.|.+.|+++...+..++++++..+.+++....+...+ +   ..+..--..+.+..+++.+..+.+..+.+++.+
T Consensus       294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~  373 (1074)
T KOG0250|consen  294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKE  373 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888888888888888888888888776555322111 0   011000011233333344444444444444555


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          531 KAQIESDSSMYRNLA-AKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       531 ~~~~eae~~~~~~~a-~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      ...++..++++++.. +.+..++.+....++.|+.++..++.++..|+
T Consensus       374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~  421 (1074)
T KOG0250|consen  374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR  421 (1074)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555544 44444444444555555555555555555555

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.76  E-value=0.071  Score=53.43  Aligned_cols=115  Identities=19%  Similarity=0.235  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKA  532 (657)
Q Consensus       453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~  532 (657)
                      .....+.++...+.....++.++......+..+|.......          ...+.++......|..+...+..|+.++.
T Consensus        64 ~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l----------~~l~~~~~~~~~~l~~l~~~~~~L~~~~~  133 (194)
T PF08614_consen   64 VSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDEL----------QELEKELSEKERRLAELEAELAQLEEKIK  133 (194)
T ss_dssp             ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc----------chhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777777777666666654333100          12234445555566666666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          533 QIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       533 ~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      .++.++.......+.+..++..|+..++.+|..+.++++|++.|=
T Consensus       134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV  178 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777788888888888888888888888888887774

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.72  E-value=0.8  Score=56.94  Aligned_cols=26  Identities=12%  Similarity=0.088  Sum_probs=11.2

Q ss_pred             HHHHHHhHhHHHHHhhhhhhhHHHHH
Q 006200          600 QKESEAELNDLLVCLGQEQSKVEKLS  625 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K~~~~k  625 (657)
                      +...+++++++-.-+.....+...++
T Consensus       471 l~~~~~~l~~l~~~l~~l~~~~~~l~  496 (1164)
T TIGR02169       471 LYDLKEEYDRVEKELSKLQRELAEAE  496 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.70  E-value=0.88  Score=47.28  Aligned_cols=44  Identities=30%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006200          509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDL  552 (657)
Q Consensus       509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l  552 (657)
                      +.+.++..+...+...+.++.+..++++++...++...+.+..+
T Consensus        39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555555555555555555555444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.69  E-value=0.74  Score=52.93  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          461 LKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       461 lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      +..++++-.++..+|...+..|+.++
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~  166 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEV  166 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555566666666666666654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.69  E-value=0.93  Score=56.39  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=10.0

Q ss_pred             HHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          603 SEAELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       603 ~~~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      .+.++..+--=+.+...++.+.+.++
T Consensus       467 ~~~~l~~~~~~l~~l~~~l~~l~~~~  492 (1164)
T TIGR02169       467 YEQELYDLKEEYDRVEKELSKLQREL  492 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.65  E-value=0.93  Score=52.12  Aligned_cols=70  Identities=11%  Similarity=0.121  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      ..++.++.+++......+.++.++.+++.++.+++......+..|+++..+++.++..+..+++..+-++
T Consensus       213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~  282 (562)
T PHA02562        213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE  282 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567778888888888888888888888888888777777777788888888888888777777776664

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.62  E-value=1  Score=55.88  Aligned_cols=14  Identities=29%  Similarity=0.299  Sum_probs=7.6

Q ss_pred             hHHHHHHHHHHcCc
Q 006200          620 KVEKLSARLLELGE  633 (657)
Q Consensus       620 K~~~~k~~L~~lg~  633 (657)
                      ++..+++++.++|.
T Consensus       966 ~~~~l~~~i~~lg~  979 (1179)
T TIGR02168       966 DEEEARRRLKRLEN  979 (1179)
T ss_pred             CHHHHHHHHHHHHH
Confidence            34455555555555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.61  E-value=1.2  Score=44.53  Aligned_cols=98  Identities=24%  Similarity=0.271  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          468 QCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAK  547 (657)
Q Consensus       468 Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~  547 (657)
                      -..--+.|..++..|+..+...-          -.++....++..|+.++..+++..+..    ..++.|++++|..+..
T Consensus        13 L~~~n~~L~~en~kL~~~ve~~e----------e~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~   78 (193)
T PF14662_consen   13 LQLNNQKLADENAKLQRSVETAE----------EGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKS   78 (193)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            33334445556666665442211          112344667788888887776654432    3578889999999999


Q ss_pred             HHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200          548 MESDLKSLSDAYNSLEQTNFHLEKEVKALKSG  579 (657)
Q Consensus       548 le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~  579 (657)
                      +|..-++|..+-.++|.++.+|..++..|.++
T Consensus        79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee  110 (193)
T PF14662_consen   79 LEEENRSLLAQARQLEKEQQSLVAEIETLQEE  110 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.50  E-value=1.9  Score=49.42  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=29.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELA  487 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~  487 (657)
                      ..++-.+|+....-+..+|..++..+..|.+++.
T Consensus       219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~  252 (581)
T KOG0995|consen  219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN  252 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778888888899999999999999999885

>PRK09039 hypothetical protein; Validated

Probab=95.50  E-value=1.3  Score=48.39  Aligned_cols=42  Identities=14%  Similarity=0.121  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME  549 (657)
Q Consensus       508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le  549 (657)
                      .+...|.++|.+.+........+...++++++.++.....++
T Consensus       116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le  157 (343)
T PRK09039        116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE  157 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444434444444444444444433333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.43  E-value=1.1  Score=53.28  Aligned_cols=134  Identities=25%  Similarity=0.334  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDS  538 (657)
Q Consensus       459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~  538 (657)
                      +.|...|.+...+|..++..+.....                        +++.|.....+..+..+.++.++.+++.|+
T Consensus        30 ~~~~~~i~~l~~elk~~~~~~~~~~~------------------------e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~   85 (717)
T PF09730_consen   30 AYLQQRILELENELKQLRQELSNVQA------------------------ENERLSQLNQELRKECEDLELERKRLREEI   85 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666555555544444                        345555566666666777777777777777


Q ss_pred             HHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH-------------HHHH---HHHH
Q 006200          539 SMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE-------------AREE---AQKE  602 (657)
Q Consensus       539 ~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~-------------~~~e---~~~~  602 (657)
                      ..||..-.++=.|       |++||.+|..|.++|..||+.-.     +.+..|-+             .-+|   -+.=
T Consensus        86 ke~K~rE~rll~d-------yselEeENislQKqvs~Lk~sQv-----efE~~Khei~rl~Ee~~~l~~qlee~~rLk~i  153 (717)
T PF09730_consen   86 KEYKFREARLLQD-------YSELEEENISLQKQVSVLKQSQV-----EFEGLKHEIKRLEEEIELLNSQLEEAARLKEI  153 (717)
T ss_pred             HHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777665555433       66677777777777766664110     12222211             1111   1233


Q ss_pred             HHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          603 SEAELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       603 ~~~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      +++-+++-|.-|-..-+-...+|+-|
T Consensus       154 ae~qleEALesl~~EReqk~~LrkEL  179 (717)
T PF09730_consen  154 AEKQLEEALESLKSEREQKNALRKEL  179 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666665555555666555

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.32  E-value=1.3  Score=55.08  Aligned_cols=7  Identities=29%  Similarity=0.548  Sum_probs=2.8

Q ss_pred             HHHHhhc
Q 006200          283 AVHCFLD  289 (657)
Q Consensus       283 AV~~FL~  289 (657)
                      +|.+.+.
T Consensus       507 ~v~~~i~  513 (1179)
T TIGR02168       507 GVKALLK  513 (1179)
T ss_pred             HHHHHHh
Confidence            3444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.23  E-value=1.6  Score=52.16  Aligned_cols=28  Identities=36%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             HHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          601 KESEAELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      ++.++|.|.||.-|.-+.+|...+..-|
T Consensus       583 ~e~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  583 KESEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4567889999999999999988876643

; GO: 0016021 integral to membrane

>PRK02224 chromosome segregation protein; Provisional

Probab=95.12  E-value=0.83  Score=55.62  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----chhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGAS----QSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK  531 (657)
Q Consensus       456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~----~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~  531 (657)
                      +.++.|++.+.+-..++.++..++..+..++.........    ....+. .......++....++++....++.++.+.
T Consensus       468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~-~~~l~~~~~~~~e~le~~~~~~~~l~~e~  546 (880)
T PRK02224        468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEER-REDLEELIAERRETIEEKRERAEELRERA  546 (880)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5666666666666666666666666666554322210000    000000 00111223334444555555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      ..+++++..+...+..++.....+..++..++.++..++.++..+.
T Consensus       547 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le  592 (880)
T PRK02224        547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE  592 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666555555555555555555444444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.08  E-value=1.2  Score=54.38  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG  490 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~  490 (657)
                      |.....++..+...|...+++...+++.+....
T Consensus       276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~  308 (1074)
T KOG0250|consen  276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQ  308 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666777777777777777665443

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=95.02  E-value=1.3  Score=47.86  Aligned_cols=152  Identities=15%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             cHHHHHHHHHhccC-CCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccc------hHHHHHHHHHh--ccCchh
Q 006200           63 KALDNLLMLAVESQ-WAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVE------AALNSILRIIL--RTSSMQ  133 (657)
Q Consensus        63 glL~~ll~La~~s~-~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~------pal~~LL~~~L--~~~~~~  133 (657)
                      .++..||++.+... .-+.++|+.|+.|+-.-..+|+..|..|.+-.+|..+...      +.+.+|+..-.  ..+...
T Consensus        34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~  113 (312)
T PF04869_consen   34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR  113 (312)
T ss_dssp             EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred             cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence            46788999988432 2589999999999999999999999999999998642211      23344433211  122223


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHHhh-hcCCCCCCCCCCCcccccCChhHHHhhhcccCCC-CcchhHHHHHHHHHHHHh
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLTST-LIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGES-DGDLEVCCRAASVLSHIL  211 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~~t-l~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~-~~dpy~~wfAa~iL~hll  211 (657)
                      ... |+.+|--.+++|++.|..+.+- ..+.+        .+..+++..+.+..-|...-. ..||...-.=-++|..-|
T Consensus       114 ~wf-Aa~il~hll~dn~~~Ke~al~V~~~~~~--------~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL  184 (312)
T PF04869_consen  114 CWF-AAVILMHLLRDNPEAKEQALRVTEGDES--------SGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWL  184 (312)
T ss_dssp             HHH-HHHHHHHHHTT-HHHHHHHTT--EE--S--------TTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcCHHHHHHHHcccCCCCC--------CCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHH
Confidence            334 4455556788898888655543 11111        123446665554444433222 334433222234556666


Q ss_pred             cCCHHHHHHHhc
Q 006200          212 MDNLQCKERVLR  223 (657)
Q Consensus       212 ~dn~~~Ke~al~  223 (657)
                      .++|.+-.--+.
T Consensus       185 ~e~p~AV~~FL~  196 (312)
T PF04869_consen  185 FECPDAVNDFLS  196 (312)
T ss_dssp             TT-HHHHHHHHC
T ss_pred             hCCHHHHHHHHc
Confidence            777766554444

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.89  E-value=2  Score=51.77  Aligned_cols=120  Identities=24%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCcchhhhhhccccHHHHHHHHHHHHH-------HHHHHHH
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGG----DGASQSEQRASGALDRVQVETLRKDLHE-------ASQRLEI  526 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~~~~q~e~L~~~L~~-------~~~~~e~  526 (657)
                      +++++-.|.+.+.+|..++.++..+..+......    -+.+-............+++.|+..|++       .+++++.
T Consensus       289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~  368 (775)
T PF10174_consen  289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK  368 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777777776666664311110    0000000000011223444444443333       3333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          527 LKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       527 l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +..++.....|+.+++.....-+..++.|..+|..|+..+..-+.++..++
T Consensus       369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k  419 (775)
T PF10174_consen  369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEK  419 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666666666666666666666666666666655555444444444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK03918 chromosome segregation protein; Provisional

Probab=94.88  E-value=2.2  Score=51.94  Aligned_cols=10  Identities=0%  Similarity=0.159  Sum_probs=4.1

Q ss_pred             HHHHHHhhcc
Q 006200          337 IVDSISQKVG  346 (657)
Q Consensus       337 l~~lI~~RiG  346 (657)
                      +...|...+|
T Consensus       113 ~~~~i~~~~~  122 (880)
T PRK03918        113 VREWVERLIP  122 (880)
T ss_pred             HHHHHHHhcC
Confidence            3344444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=94.87  E-value=1.2  Score=41.56  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=28.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      .+..+|.+|.+.|+..+.+++.++.+++.|..
T Consensus        13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~   44 (120)
T PF12325_consen   13 PSVQLVERLQSQLRRLEGELASLQEELARLEA   44 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56779999999999999999999888888877

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=94.78  E-value=2.4  Score=50.26  Aligned_cols=116  Identities=22%  Similarity=0.232  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          461 LKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASG------ALDRVQVETLRKDLHEASQRLEILKEEKAQI  534 (657)
Q Consensus       461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~------~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~  534 (657)
                      ++--+=++.+=||++++.-..+.+.+...+|.+.|+.--+.++      .--+..+-.|..++.+.+.++..|.....++
T Consensus        39 lk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~l  118 (1265)
T KOG0976|consen   39 LKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRL  118 (1265)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344456678899999998888888877776664432111111      0114455556777777777777777778888


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200          535 ESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL  576 (657)
Q Consensus       535 eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l  576 (657)
                      |.|...++.+++.+|.+++.....++++..+...+++++.+-
T Consensus       119 E~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk  160 (1265)
T KOG0976|consen  119 EMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK  160 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence            888999999999999988888777777666666666665443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.74  E-value=2.1  Score=49.33  Aligned_cols=44  Identities=23%  Similarity=0.253  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES  550 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~  550 (657)
                      ..++.++++-++++.+....++.+..+++.|++.|+....+.+.
T Consensus        91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k  134 (546)
T KOG0977|consen   91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK  134 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666544

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.70  E-value=2  Score=52.91  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHH
Q 006200          595 AREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLE  630 (657)
Q Consensus       595 ~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~  630 (657)
                      ..+...+.++++.++|...+-+.+.|....+.++++
T Consensus       946 ~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e  981 (1293)
T KOG0996|consen  946 ELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKE  981 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344556777788888888888887777776666654

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.69  E-value=2.2  Score=51.37  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQI  534 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~  534 (657)
                      +..++-||+.++...+.-..|++++..|..+|..-...-          .-...+++.++..+.-.+..++.+++.....
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l----------~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~  390 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL----------EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK  390 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777777777777777777777777664333100          0113444555555555555555566666666


Q ss_pred             HHHHHHHHHHHHHHHHhH
Q 006200          535 ESDSSMYRNLAAKMESDL  552 (657)
Q Consensus       535 eae~~~~~~~a~~le~~l  552 (657)
                      +.++..++..+..++..|
T Consensus       391 e~ki~~Lq~kie~Lee~l  408 (775)
T PF10174_consen  391 ERKINVLQKKIENLEEQL  408 (775)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666665555433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.57  E-value=0.75  Score=49.29  Aligned_cols=74  Identities=16%  Similarity=0.310  Sum_probs=54.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      .++.+|..|..++..+++...++-.|+..+..-+...|..-..|..+|..+.++|.....-.....+|++.+|.
T Consensus       231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~  304 (306)
T PF04849_consen  231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK  304 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            44667777777777777777777777777777777777777777777777777777777777777777777764

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.56  E-value=4.2  Score=43.34  Aligned_cols=91  Identities=19%  Similarity=0.175  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHH-------HHH
Q 006200          530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEA-------QKE  602 (657)
Q Consensus       530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~-------~~~  602 (657)
                      +...++.|+..++..+..++.++.++......|+.++..++.+...-++        +..... ...+.+       ...
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~--------~~~~~i-~~le~el~~l~~~~~~  280 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE--------EYQAEI-AELEEELAELREEMAR  280 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH--------HHHHhh-hccchhHHHHHHHHHH
Confidence            3344555555555555555555555555544555444444333322221        011110 122222       334


Q ss_pred             HHHhHhHHHHHhhhhhhhHHHHHHHHH
Q 006200          603 SEAELNDLLVCLGQEQSKVEKLSARLL  629 (657)
Q Consensus       603 ~~~e~~dLl~ll~d~~~K~~~~k~~L~  629 (657)
                      ...+..+||-+=..+|.-+..||+.|.
T Consensus       281 ~~~ey~~Ll~~K~~Ld~EIatYR~LLE  307 (312)
T PF00038_consen  281 QLREYQELLDVKLALDAEIATYRKLLE  307 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            444557777777788999999998773

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.53  E-value=2.4  Score=46.51  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=13.7

Q ss_pred             HHHhHhHHHHHhhhhhhhHHHHHHHHHH
Q 006200          603 SEAELNDLLVCLGQEQSKVEKLSARLLE  630 (657)
Q Consensus       603 ~~~e~~dLl~ll~d~~~K~~~~k~~L~~  630 (657)
                      .+.++.++-.-+.+...++...+..|..
T Consensus       244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~  271 (423)
T TIGR01843       244 VLEELTEAQARLAELRERLNKARDRLQR  271 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444445555555555555544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=94.52  E-value=2.9  Score=42.36  Aligned_cols=100  Identities=18%  Similarity=0.296  Sum_probs=63.2

Q ss_pred             hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 006200          448 QRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEIL  527 (657)
Q Consensus       448 ~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l  527 (657)
                      +++|+||     =||.++++-..++..=-.++.+|..++....+          .......++..|+..+...+..++..
T Consensus         7 qk~GEIs-----LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~----------~l~~~~~~~~~l~~~~~~K~~ELE~c   71 (202)
T PF06818_consen    7 QKSGEIS-----LLKQQLKESQAEVNQKDSEIVSLRAQLRELRA----------ELRNKESQIQELQDSLRTKQLELEVC   71 (202)
T ss_pred             hhhhhHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHhhHhHHHh
Confidence            4455544     36666666555555444555555555432221          01122455566777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHH
Q 006200          528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSL  562 (657)
Q Consensus       528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~L  562 (657)
                      +.|+.+...|++-++..+..++.++..|...+...
T Consensus        72 e~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   72 ENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            88888888888888888888888888877766654

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.49  E-value=1.3  Score=48.39  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          521 SQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       521 ~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      ..+..+++.++.+..-+...+.+.+..++++|+.|...|.+|+++...+-.+-++|.
T Consensus       122 ~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455556666777777777888888888888888888877777666666665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=0.31  Score=52.91  Aligned_cols=107  Identities=22%  Similarity=0.255  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhh
Q 006200           26 NLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLA  105 (657)
Q Consensus        26 N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa  105 (657)
                      -...+|+-+..||.+            .-|=.-|.+.|.+..|+. .+  ...+..||..|..++|-+.+.||..|+.+-
T Consensus        99 ~ke~ald~Le~lve~------------iDnAndl~~~ggl~~ll~-~l--~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~  163 (342)
T KOG2160|consen   99 DKEDALDNLEELVED------------IDNANDLISLGGLVPLLG-YL--ENSDAELRELAARVIGTAVQNNPKSQEQVI  163 (342)
T ss_pred             HHHHHHHHHHHHHHh------------hhhHHhHhhccCHHHHHH-Hh--cCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            345666666777663            135566889999988888 55  356999999999999999999999999976


Q ss_pred             ccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHH-HH
Q 006200          106 SKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQA-ML  156 (657)
Q Consensus       106 ~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~-~L  156 (657)
                      ...         ++-.|+...-...+.+.|..|+|.+-|.+.+|+.|+. |+
T Consensus       164 E~~---------~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl  206 (342)
T KOG2160|consen  164 ELG---------ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL  206 (342)
T ss_pred             Hcc---------cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            554         2334444433555668899999999999999999994 44

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.44  E-value=0.39  Score=50.21  Aligned_cols=74  Identities=26%  Similarity=0.334  Sum_probs=60.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hHHHhHHHHh
Q 006200          506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES-------------------------DLKSLSDAYN  560 (657)
Q Consensus       506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~-------------------------~l~~ls~~~~  560 (657)
                      .+.++.-|..+|..++++++.|+.++.+.++|++..+..+....+                         .+..|..+|+
T Consensus        93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekyn  172 (307)
T PF10481_consen   93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYN  172 (307)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHH
Confidence            367888899999999999999999999999999998888876553                         3444556666


Q ss_pred             HHHHHhHhHHHHHHHHHcC
Q 006200          561 SLEQTNFHLEKEVKALKSG  579 (657)
Q Consensus       561 ~Le~~~~~le~e~~~lr~~  579 (657)
                      .--.+..+||.|++.++-.
T Consensus       173 keveerkrle~e~k~lq~k  191 (307)
T PF10481_consen  173 KEVEERKRLEAEVKALQAK  191 (307)
T ss_pred             HHHHHHhhHHHHHHHHhcc
Confidence            5556788899999999853

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.42  E-value=1.9  Score=56.37  Aligned_cols=72  Identities=21%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      +.++..+..++++.+.....++.++...+.++..++......+..+.++...++.++.++..+++++..+++
T Consensus       907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e  978 (1930)
T KOG0161|consen  907 EKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE  978 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555566666777777777777777777777777777777777777777777666554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.36  E-value=2.6  Score=53.28  Aligned_cols=30  Identities=37%  Similarity=0.462  Sum_probs=15.9

Q ss_pred             HHHHHHhHhHHHHHhhhhhhhHHHHHHHHH
Q 006200          600 QKESEAELNDLLVCLGQEQSKVEKLSARLL  629 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~  629 (657)
                      +.+++++++.+--.+.+...++.+++.++.
T Consensus       886 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  915 (1163)
T COG1196         886 KEELEEELRELESELAELKEEIEKLRERLE  915 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555554443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=94.26  E-value=1.4  Score=41.26  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200          596 REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLEL  631 (657)
Q Consensus       596 ~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l  631 (657)
                      -+...++++...+.+|.++|+-.+.+..+|..+.++
T Consensus        73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl  108 (120)
T PF12325_consen   73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL  108 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            334578888899999999999999988888876554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.11  E-value=8.1  Score=40.83  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          463 AFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       463 ~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      +.|..++.+|.+++.....++.++
T Consensus        31 ~~i~~~ds~l~~~~~~~~~~q~ei   54 (265)
T COG3883          31 DKIQNQDSKLSELQKEKKNIQNEI   54 (265)
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHH
Confidence            458889999988888877777654

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.99  E-value=2.3  Score=49.08  Aligned_cols=111  Identities=21%  Similarity=0.241  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIG--GDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES  536 (657)
Q Consensus       459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ea  536 (657)
                      +.||++++.-...++.-+++...|..+|....  ++.+...+.     ..+-+.++|+.+|.++...+   +..+.+|..
T Consensus       286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh-----~aRLe~aql~~qLad~~l~l---ke~~~q~~q  357 (546)
T PF07888_consen  286 EALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELH-----QARLEAAQLKLQLADASLEL---KEGRSQWAQ  357 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            45778888877788878888888888774433  222221111     11456777888887776643   444455555


Q ss_pred             HHHHHHHHHHHHHHhHHHhH-------HHHhHHHHHhHhHHHHHHHHH
Q 006200          537 DSSMYRNLAAKMESDLKSLS-------DAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       537 e~~~~~~~a~~le~~l~~ls-------~~~~~Le~~~~~le~e~~~lr  577 (657)
                      |...++..+...+..+.+|+       ..|.+=..++.+|+.++...+
T Consensus       358 Ek~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~  405 (546)
T PF07888_consen  358 EKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK  405 (546)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55555554444444444444       444444456666777765544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.94  E-value=18  Score=43.35  Aligned_cols=145  Identities=13%  Similarity=0.154  Sum_probs=79.5

Q ss_pred             hhHHHHHhhcHHHHHHHHH--hc-c-----CCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCC-CCcc---------
Q 006200           54 TNKTVLVQKKALDNLLMLA--VE-S-----QWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGE-EPQV---------  115 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La--~~-s-----~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~-~p~~---------  115 (657)
                      +||+-|...|.+.-|..|.  |. +     .|.  +=|+.-++++=++||-           .|++ .++.         
T Consensus       245 SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~--~Qrv~Nv~~~Lqivr~-----------lVsP~Nt~~~~~q~qk~l  311 (970)
T KOG0946|consen  245 SNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWS--TQRVQNVIEALQIVRS-----------LVSPGNTSSITHQNQKAL  311 (970)
T ss_pred             chhhHHhccccHHHHHhhcCcccccCccccccc--HHHHHHHHHHHHHHHH-----------hcCCCCcHHHHHHHHHHH
Confidence            7999999999888777541  10 1     243  3456667777777762           2332 1110         


Q ss_pred             -ch-HHHHHHHHHhccCc-hhHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCC
Q 006200          116 -EA-ALNSILRIILRTSS-MQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGE  192 (657)
Q Consensus       116 -~p-al~~LL~~~L~~~~-~~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d  192 (657)
                       .. .+.+|....++..- ...+--+....---+++|...|..+..+..|+..+          |.+...+|+-.++..-
T Consensus       312 ~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~----------Pr~sivvllmsm~ne~  381 (970)
T KOG0946|consen  312 VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPN----------PRPSIVVLLMSMFNEK  381 (970)
T ss_pred             HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCC----------CccchhHHHHHHHhcc
Confidence             01 24566666555531 12332333333345679999998888888887543          2344555666554422


Q ss_pred             CCcchhHHHHHHH-HHHHHhcCCHHHHHHHhcc
Q 006200          193 SDGDLEVCCRAAS-VLSHILMDNLQCKERVLRI  224 (657)
Q Consensus       193 ~~~dpy~~wfAa~-iL~hll~dn~~~Ke~al~V  224 (657)
                         -||..-.|+. .|-..+++|...+...+.-
T Consensus       382 ---q~~~lRcAv~ycf~s~l~dN~~gq~~~l~t  411 (970)
T KOG0946|consen  382 ---QPFSLRCAVLYCFRSYLYDNDDGQRKFLKT  411 (970)
T ss_pred             ---CCchHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence               2333222332 4555667887666555443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.90  E-value=2.1  Score=46.44  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=23.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES  550 (657)
Q Consensus       506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~  550 (657)
                      ...+++.++++|.+....++..+.++..++.+...++..+.++..
T Consensus       207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~  251 (325)
T PF08317_consen  207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE  251 (325)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666666555555555454555555544444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.88  E-value=8.8  Score=40.01  Aligned_cols=21  Identities=5%  Similarity=-0.156  Sum_probs=11.9

Q ss_pred             HHHhhhhhhhHHHHHHHHHHc
Q 006200          611 LVCLGQEQSKVEKLSARLLEL  631 (657)
Q Consensus       611 l~ll~d~~~K~~~~k~~L~~l  631 (657)
                      -.|-..++++.-..-.|++..
T Consensus       166 ~~L~~~l~~ell~~yeri~~~  186 (239)
T COG1579         166 EELKEKLDPELLSEYERIRKN  186 (239)
T ss_pred             HHHHHhcCHHHHHHHHHHHhc
Confidence            345556666665555565543

>PRK02224 chromosome segregation protein; Provisional

Probab=93.86  E-value=3.4  Score=50.43  Aligned_cols=8  Identities=25%  Similarity=0.563  Sum_probs=4.4

Q ss_pred             HHHHHhcC
Q 006200           90 ISDIIAAH   97 (657)
Q Consensus        90 ~adlIrgn   97 (657)
                      ..++|+.+
T Consensus        57 ~~~~~~~~   64 (880)
T PRK02224         57 LDDVITIG   64 (880)
T ss_pred             HHHHHhCC
Confidence            45666543

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=93.78  E-value=6.5  Score=46.75  Aligned_cols=174  Identities=25%  Similarity=0.244  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCcc-hhhhhhccccHHHHHHHHHHHHHHHHHHHH-HHHHH--
Q 006200          457 YVKRLKAFVEKQ-CSEIQKLLGRNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEI-LKEEK--  531 (657)
Q Consensus       457 ~v~~lk~~i~~Q-~~eiq~L~~~~~~L~~~l~~~~~~~~~~-~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~-l~~e~--  531 (657)
                      ++..||++|.+| |.|++.|-.++...-.-|.-..|...-+ +-+=+ --..+.++.+||++|.-+.+++.+ -++++  
T Consensus       342 LLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA-~QplrsENaqLrRrLrilnqqlreqe~~~k~~  420 (861)
T PF15254_consen  342 LLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALA-MQPLRSENAQLRRRLRILNQQLREQEKAEKTS  420 (861)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            556788888888 8999999888888887776555433111 10000 002245556666666555544321 11111  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhHH-------HhH-------HHHhHHHHHhHhHHHH-------HHHHHcCCCCCCcccH
Q 006200          532 --AQIESDSSMYRNLAAKMESDLK-------SLS-------DAYNSLEQTNFHLEKE-------VKALKSGGSSVSSPDV  588 (657)
Q Consensus       532 --~~~eae~~~~~~~a~~le~~l~-------~ls-------~~~~~Le~~~~~le~e-------~~~lr~~~~~~~~~~l  588 (657)
                        ....-|+..++..---+|+.|+       .|.       ..++++..+|+++.+.       +.+-|+.      -|+
T Consensus       421 ~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~------~d~  494 (861)
T PF15254_consen  421 GSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ------FDI  494 (861)
T ss_pred             CCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHH
Confidence              0011122222222222222222       222       2222223344443322       2222211      123


Q ss_pred             HHHHH-HHHHH----------HHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhh
Q 006200          589 EAIKA-EAREE----------AQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEK  637 (657)
Q Consensus       589 ~~~~~-~~~~e----------~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~  637 (657)
                      +..|- .+-++          +++++++|--.|-+-|-+-|+-++|++..-|.|--....
T Consensus       495 e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~  554 (861)
T PF15254_consen  495 ETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK  554 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32221 11222          257788888889899999999999998766666544433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.69  E-value=6.9  Score=37.57  Aligned_cols=65  Identities=23%  Similarity=0.290  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHH
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEK  571 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~  571 (657)
                      ++.++.|+.++....+.+..++.++..+.+|..++-+.-.+++..+..|.....++..-+...+.
T Consensus        51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~  115 (140)
T PF10473_consen   51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ  115 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45666666666666666666555555555555555555555554444444333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.59  E-value=7.8  Score=44.43  Aligned_cols=70  Identities=29%  Similarity=0.463  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHhH-------HHHhHHHHHhHhHHHHHH
Q 006200          509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME-------SDLKSLS-------DAYNSLEQTNFHLEKEVK  574 (657)
Q Consensus       509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le-------~~l~~ls-------~~~~~Le~~~~~le~e~~  574 (657)
                      ++-.|+..|.+..+.++..+.|+.++.....+++..-+..|       .+++...       ..|++||.+|..|.+.|.
T Consensus       108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs  187 (772)
T KOG0999|consen  108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS  187 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            44555555555555555555555555555444444333222       2222222       468899999999999999


Q ss_pred             HHHc
Q 006200          575 ALKS  578 (657)
Q Consensus       575 ~lr~  578 (657)
                      .||+
T Consensus       188 ~LR~  191 (772)
T KOG0999|consen  188 NLRQ  191 (772)
T ss_pred             HHhh
Confidence            9985

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.59  E-value=6  Score=50.08  Aligned_cols=14  Identities=21%  Similarity=0.161  Sum_probs=7.2

Q ss_pred             HHHHHhhcCCChHH
Q 006200          282 NAVHCFLDSRPHLT  295 (657)
Q Consensus       282 ~AV~~FL~~~s~l~  295 (657)
                      .||..+|++.-.+.
T Consensus       607 ~~~~~~l~~t~Iv~  620 (1163)
T COG1196         607 PAVRFVLGDTLVVD  620 (1163)
T ss_pred             HHHHHHhCCeEEec
Confidence            55555555554333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.56  E-value=3.7  Score=48.16  Aligned_cols=40  Identities=23%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             HHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhh
Q 006200          597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVE  636 (657)
Q Consensus       597 ~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~  636 (657)
                      ..+.++++.+...+..-+-.-++...+++..++.++.+++
T Consensus       446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~  485 (594)
T PF05667_consen  446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN  485 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            3445555555555555555555555555555555555543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.41  E-value=2.5  Score=55.32  Aligned_cols=30  Identities=27%  Similarity=0.212  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      -+..+++.+++-...+++++.+...+..++
T Consensus       937 e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~  966 (1930)
T KOG0161|consen  937 EVQELKEQLEELELTLQKLELEKNAAENKL  966 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666665555555544444444

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.41  E-value=3.4  Score=44.20  Aligned_cols=196  Identities=17%  Similarity=0.199  Sum_probs=114.1

Q ss_pred             chHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHh
Q 006200           79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTS  158 (657)
Q Consensus        79 p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~  158 (657)
                      ..++.--.|..++||++.++...+.|........+  .| ...+++ ++..++......|++++-..+...+........
T Consensus        70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~--~~-~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~  145 (312)
T PF03224_consen   70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDS--DP-YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVK  145 (312)
T ss_dssp             -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-----HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc--hh-HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHH
Confidence            78999999999999999999999999887764322  22 355666 666666666677777777666555443322111


Q ss_pred             hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcc
Q 006200          159 TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEP  238 (657)
Q Consensus       159 tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~  238 (657)
                      .+                    ...++.-|.+.-...+.-...+|.-.|.+++ .+++.|.......             
T Consensus       146 ~~--------------------l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~-------------  191 (312)
T PF03224_consen  146 EA--------------------LPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSN-------------  191 (312)
T ss_dssp             HH--------------------HHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHH-------------
T ss_pred             HH--------------------HHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcC-------------
Confidence            11                    1112222211111111111244566777777 4567777666521             


Q ss_pred             hHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHH-hhcChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHH
Q 006200          239 LMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTW-LADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVL  317 (657)
Q Consensus       239 ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~W-L~e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~L  317 (657)
                      .++.+..++.......+      ..-.|+-|-.++|.| |-=++.++..|...+ -++.|++.+....-+-+||=..|.|
T Consensus       192 ~v~~l~~iL~~~~~~~~------~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l  264 (312)
T PF03224_consen  192 GVSPLFDILRKQATNSN------SSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAIL  264 (312)
T ss_dssp             HHHHHHHHHH---------------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhcccCC------CCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHH
Confidence            34444444421110011      123788899999999 677888999998888 8999999987776668888766666


Q ss_pred             hh
Q 006200          318 LG  319 (657)
Q Consensus       318 LG  319 (657)
                      .=
T Consensus       265 ~N  266 (312)
T PF03224_consen  265 RN  266 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.38  E-value=10  Score=38.50  Aligned_cols=34  Identities=32%  Similarity=0.273  Sum_probs=18.4

Q ss_pred             HHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          544 LAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       544 ~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      ....++..+..|.-.+..|++....++.|-.+|.
T Consensus        94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555555555555555555555554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.27  E-value=0.35  Score=48.50  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=27.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCc
Q 006200          506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSS  585 (657)
Q Consensus       506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~  585 (657)
                      ....+..++.+|.++.+....+...+..+..++..++......+..+..|...+..|+.++..++.++++.+.....- .
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l-~  150 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL-Q  150 (194)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            345556666667666666655555544444444444444444444444444444444444444444443332100000 0


Q ss_pred             ccHHHHHHH--HHHHHHHHHHHhHhHHHHHhh
Q 006200          586 PDVEAIKAE--AREEAQKESEAELNDLLVCLG  615 (657)
Q Consensus       586 ~~l~~~~~~--~~~e~~~~~~~e~~dLl~ll~  615 (657)
                      .++.+...+  ..++....+++|-.+|+-=|.
T Consensus       151 DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm  182 (194)
T PF08614_consen  151 DELQALQLQLNMLEEKLRKLEEENRELVERWM  182 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222211  444556666666666665544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK03918 chromosome segregation protein; Provisional

Probab=93.23  E-value=6.8  Score=47.71  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=14.5

Q ss_pred             HHHHHHhhcchhhHHHHHHHHhc
Q 006200          337 IVDSISQKVGLTSYFLKFDEMQK  359 (657)
Q Consensus       337 l~~lI~~RiG~d~y~~kl~~lr~  359 (657)
                      ...+|..=+|.+.|-.....+++
T Consensus       147 r~~~~~~~~~~~~~~~~~~~~~~  169 (880)
T PRK03918        147 REKVVRQILGLDDYENAYKNLGE  169 (880)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Confidence            34555666788887666665554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.05  E-value=1.2  Score=45.25  Aligned_cols=70  Identities=10%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          460 RLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSS  539 (657)
Q Consensus       460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~  539 (657)
                      +.+..+.+..++++++++++..+..+..                    .....+++++++..+.+..|+.++++++.+.+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~--------------------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~  149 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWN--------------------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLI  149 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777776665321                    22234455555555555555555555555555


Q ss_pred             HHHHHHHHHH
Q 006200          540 MYRNLAAKME  549 (657)
Q Consensus       540 ~~~~~a~~le  549 (657)
                      ..++....++
T Consensus       150 ~~~~~~~~l~  159 (206)
T PRK10884        150 VAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHH
Confidence            5444333333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.05  E-value=1.2  Score=50.58  Aligned_cols=105  Identities=25%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          470 SEIQKLLGRNATLAEELAKIGGDGASQSEQRASGAL-DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKM  548 (657)
Q Consensus       470 ~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~l  548 (657)
                      ++.+.|+++++-|++++.+...++....    ..+. .-.+-.+|++++++....++..+.|+.+++.....|+....+-
T Consensus         8 q~ve~lr~eierLT~el~q~t~e~~qaA----eyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~   83 (772)
T KOG0999|consen    8 QEVEKLRQEIERLTEELEQTTEEKIQAA----EYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKV   83 (772)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566677777777777766653321100    0011 1223355666665555555544444444443333333222111


Q ss_pred             --------HHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          549 --------ESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       549 --------e~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                              ++-|+.-..+-..+-+.+..++.|++.+|.
T Consensus        84 ~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~  121 (772)
T KOG0999|consen   84 ARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQ  121 (772)
T ss_pred             hccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence                    112222222222234556667777776664

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.93  E-value=7.2  Score=47.62  Aligned_cols=73  Identities=22%  Similarity=0.278  Sum_probs=37.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      .++..+.+|...++.+.++.++-..+..+.+.+...++-...+|+..+.++.....+++.++..++.|+..++
T Consensus       784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~  856 (1174)
T KOG0933|consen  784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE  856 (1174)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555566666555555554444444444444444444455555555555555555555555555554444

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.88  E-value=11  Score=43.41  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKI  489 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~  489 (657)
                      ++.++..+..-..+...++.++..+..++...
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l  246 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNL  246 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.84  E-value=6.3  Score=42.44  Aligned_cols=145  Identities=19%  Similarity=0.243  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES  536 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ea  536 (657)
                      .++.|+.+++.-..+-..|+.+...|..+-.       ..++.      .+.=+..--++|.+++.++..|..++++-..
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~-------~~Eek------EqqLv~dcv~QL~~An~qia~LseELa~k~E  227 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETD-------TYEEK------EQQLVLDCVKQLSEANQQIASLSEELARKTE  227 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh-------hccHH------HHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence            4556677777666666666666555554211       00000      0111222346777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhh
Q 006200          537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQ  616 (657)
Q Consensus       537 e~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d  616 (657)
                      +...++.-+..+.+.+-.+..+..++-.++..+...+...++-         .    ..-..+..+++..-.+++-+|.+
T Consensus       228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~---------Q----~~L~aEL~elqdkY~E~~~mL~E  294 (306)
T PF04849_consen  228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES---------Q----RQLQAELQELQDKYAECMAMLHE  294 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777766666666666555555555444443320         0    01223477888888888888888


Q ss_pred             hhhhHHHHHHH
Q 006200          617 EQSKVEKLSAR  627 (657)
Q Consensus       617 ~~~K~~~~k~~  627 (657)
                      ..+-++.+|.|
T Consensus       295 aQEElk~lR~~  305 (306)
T PF04849_consen  295 AQEELKTLRKR  305 (306)
T ss_pred             HHHHHHHhhCC
Confidence            88888888754

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=92.82  E-value=3.8  Score=41.97  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCC
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGS  581 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~  581 (657)
                      +...+.++.+|++.++..++|-.++.+++++.+..+....+++.+...|.....-|..+.++|++...+|..+..
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            455677888888888888888888888888888888888888877777777777777777777777777766543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.79  E-value=8.1  Score=46.56  Aligned_cols=73  Identities=22%  Similarity=0.278  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG  579 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~  579 (657)
                      -.+..+..+|++.+.+.+..++.++..+...++.++....+++....+..+.|+++++++.-+..|++.++..
T Consensus       444 L~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  444 LRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666666666666777788888888888888888888888888888899988888888887777754

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=92.70  E-value=4.9  Score=45.67  Aligned_cols=72  Identities=22%  Similarity=0.403  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200          508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG  579 (657)
Q Consensus       508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~  579 (657)
                      .++-.|-.+|..+++.+..+.-|+..+..-+-.|+..-.+|+.++..+.++|.+.++.....++|++.||..
T Consensus       233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~  304 (596)
T KOG4360|consen  233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC  304 (596)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            344557777777888777788888888888888999999999999999999999999999999999999964

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.66  E-value=6.2  Score=39.05  Aligned_cols=28  Identities=29%  Similarity=0.353  Sum_probs=13.4

Q ss_pred             HHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          601 KESEAELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      .+.+.+..++...+.++.+++...+.-+
T Consensus       161 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~  188 (191)
T PF04156_consen  161 QELRSQLERLQENLQQLEEKIQELQELL  188 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555555554433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=92.62  E-value=7.9  Score=46.17  Aligned_cols=53  Identities=15%  Similarity=0.201  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      -|..++.++.+++.+++...-+-...+.++++..+.||.+..-++.-+..+++
T Consensus       320 ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e  372 (1265)
T KOG0976|consen  320 YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE  372 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH
Confidence            35666777888888877777777777778888888888776666665555553

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.61  E-value=9.8  Score=48.43  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          460 RLKAFVEKQCSEIQKLLGRNATLAEELA  487 (657)
Q Consensus       460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~  487 (657)
                      .|+..++.-...|+.++.+.+.+++++.
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~  631 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLK  631 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.61  E-value=1.8  Score=44.14  Aligned_cols=62  Identities=16%  Similarity=0.335  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      +.++..|++++++++.++..+..+          ..+...+++..+..+...++.|+++|.+|.+|+..++.
T Consensus        92 ~~rlp~le~el~~l~~~l~~~~~~----------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~  153 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNIDNT----------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQK  153 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555443332222          23445556666666777777788888888877777763

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=92.49  E-value=9.1  Score=38.30  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcc
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSP  586 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~  586 (657)
                      ...++..-.+|++.+++.+.|..-+..+...++..+.....|..++.+++..+..+..++...+.+-..-++        
T Consensus        59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~--------  130 (182)
T PF15035_consen   59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE--------  130 (182)
T ss_pred             cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            356677888899999988888888888888888877777777777777776666654444433332222111        


Q ss_pred             cHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhh
Q 006200          587 DVEAIKAEAREEAQKESEAELNDLLVCLGQEQS  619 (657)
Q Consensus       587 ~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~  619 (657)
                                 .-..-...|+..||.||.+.-.
T Consensus       131 -----------~~~~y~~~eh~rll~LWr~v~~  152 (182)
T PF15035_consen  131 -----------NFNQYLSSEHSRLLSLWREVVA  152 (182)
T ss_pred             -----------HHHhhhcccccHHHHHHHHHHH
Confidence                       0112345677777777776543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.32  E-value=10  Score=49.15  Aligned_cols=69  Identities=19%  Similarity=0.307  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +++.|..++++....++.++.+...++.+++.+.+....++..+..+..++..++.+...+++.+..+.
T Consensus       356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le  424 (1486)
T PRK04863        356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE  424 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444445555555555555555554555455555555555555555544333

>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein

Probab=92.31  E-value=9.7  Score=36.29  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=8.9

Q ss_pred             HHHhHHHHhHHHHHhHhHHHH
Q 006200          552 LKSLSDAYNSLEQTNFHLEKE  572 (657)
Q Consensus       552 l~~ls~~~~~Le~~~~~le~e  572 (657)
                      +.++...+..|++.+..+.+|
T Consensus        57 ~~~~~~~~~~l~~~~~kl~~E   77 (136)
T PF04871_consen   57 LEELASEVKELEAEKEKLKEE   77 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433

This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.16  E-value=21  Score=40.14  Aligned_cols=25  Identities=20%  Similarity=0.145  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          460 RLKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       460 ~lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      -|+.+...--+.|..|.+....|+.
T Consensus       151 ~~~~l~~~~~~~i~~l~~~~~~l~~  175 (420)
T COG4942         151 YYGALNPARAERIDALKATLKQLAA  175 (420)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555444444

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.11  E-value=12  Score=36.04  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 006200          507 RVQVETLRKDLHEASQRLEIL  527 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l  527 (657)
                      ...+..|.++|+..+...+.+
T Consensus        23 e~~v~~LEreLe~~q~~~e~~   43 (140)
T PF10473_consen   23 EDHVESLERELEMSQENKECL   43 (140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH
Confidence            344555555555555444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.00  E-value=15  Score=38.07  Aligned_cols=105  Identities=24%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHH
Q 006200          511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEA  590 (657)
Q Consensus       511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~  590 (657)
                      ..+...|+.+..+.+.++.....++.++....+....++....+++.+-..++.++..|+..++.+.             
T Consensus       123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE-------------  189 (237)
T PF00261_consen  123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE-------------  189 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            3344444444444444444444444444444444444444444444444444444444444444433             


Q ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          591 IKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       591 ~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      .+++..+.....++++.++|=.=|.....|....+.-|
T Consensus       190 ~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  190 NRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23444444556666666666665555555555555433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.98  E-value=3.2  Score=34.95  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=25.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE  485 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~  485 (657)
                      |.++.+.|..+|+.--..|+-|+-++..|++.
T Consensus         2 SlEv~ekLE~KiqqAvdTI~LLQmEieELKEk   33 (79)
T COG3074           2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEK   33 (79)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888888888888888888888888774

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.96  E-value=7.9  Score=50.09  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      .++..+..+++++...++..+.+....+.+...+.+...+++..+..+..++..+.++...++.++..+++
T Consensus       348 ~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq  418 (1486)
T PRK04863        348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQ  418 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555554

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.94  E-value=14  Score=37.44  Aligned_cols=29  Identities=24%  Similarity=0.256  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAEE  485 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~  485 (657)
                      -|..|+..|.+....|++++.+|..|..-
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~l   41 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLKQL   41 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888888888888888888888773

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.86  E-value=17  Score=37.51  Aligned_cols=12  Identities=33%  Similarity=0.468  Sum_probs=5.7

Q ss_pred             HHHHHHhHhHHH
Q 006200          600 QKESEAELNDLL  611 (657)
Q Consensus       600 ~~~~~~e~~dLl  611 (657)
                      .+.++.++|+.|
T Consensus       220 ~~~~~~eld~~l  231 (237)
T PF00261_consen  220 YKKVQEELDQTL  231 (237)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444455554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.69  E-value=4.3  Score=38.95  Aligned_cols=31  Identities=42%  Similarity=0.476  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAK  488 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~  488 (657)
                      +..+.........+|..|..++..|..++.+
T Consensus        23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~   53 (143)
T PF12718_consen   23 VKQLEQENEQKEQEITSLQKKNQQLEEELDK   53 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455556666666666666666665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.40  E-value=15  Score=44.97  Aligned_cols=25  Identities=12%  Similarity=0.076  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          460 RLKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       460 ~lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      +.+.+++.+.+++..+..+++.|+.
T Consensus       681 ~~~~~~~~~q~el~~le~eL~~le~  705 (1174)
T KOG0933|consen  681 QAQKELRAIQKELEALERELKSLEA  705 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666777666666666655

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.39  E-value=13  Score=44.78  Aligned_cols=28  Identities=14%  Similarity=0.181  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQI  534 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~  534 (657)
                      ..++.+|+.+|..++.+....++....+
T Consensus       236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l  263 (754)
T TIGR01005       236 TQQLAELNTELSRARANRAAAEGTADSV  263 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666666555444444443333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.38  E-value=24  Score=38.14  Aligned_cols=38  Identities=26%  Similarity=0.228  Sum_probs=28.9

Q ss_pred             HHHHHhHhHHHHHhhhhhhhHHHHHHHH-HHcCchhhhh
Q 006200          601 KESEAELNDLLVCLGQEQSKVEKLSARL-LELGEDVEKL  638 (657)
Q Consensus       601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L-~~lg~~v~~~  638 (657)
                      -.++.||+-|.=-|.-+=.|+..-|+.| +.|...|+..
T Consensus       170 n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~  208 (310)
T PF09755_consen  170 NTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAP  208 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence            4577888888888888888888888888 4577666643

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.21  E-value=24  Score=41.32  Aligned_cols=26  Identities=12%  Similarity=0.111  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200          465 VEKQCSEIQKLLGRNATLAEELAKIG  490 (657)
Q Consensus       465 i~~Q~~eiq~L~~~~~~L~~~l~~~~  490 (657)
                      ++.....++.+..++..|-..+.++.
T Consensus       277 l~~~~~~~~~i~~~Id~Lyd~lekE~  302 (569)
T PRK04778        277 LDEAEEKNEEIQERIDQLYDILEREV  302 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666777777776665554

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=91.13  E-value=26  Score=39.67  Aligned_cols=124  Identities=17%  Similarity=0.175  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCcc------------hh-----hhhhc--cccHHHHHHH
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGG--DGASQ------------SE-----QRASG--ALDRVQVETL  513 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~--~~~~~------------~~-----~~~~~--~~~~~q~e~L  513 (657)
                      .+++..||.-=++|...||+|+-.|.-|+.++...|.  ++..+            ++     -|+.-  -.-.+-+..|
T Consensus       316 NEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL  395 (527)
T PF15066_consen  316 NEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL  395 (527)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH
Confidence            3688899999999999999999999999998865552  11110            00     00000  0113444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH-------HHHhHHHHHhHhHHHHHHHHHc
Q 006200          514 RKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS-------DAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls-------~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      +..|...++.+.+-+.++.-++-++...+...-.||.+.+.--       ..+-+++..+...++|+..|++
T Consensus       396 qe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~  467 (527)
T PF15066_consen  396 QEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQ  467 (527)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            6666666666666566666666666666666665554332211       1223345555566677666654

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=91.04  E-value=8.5  Score=47.60  Aligned_cols=95  Identities=18%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          462 KAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMY  541 (657)
Q Consensus       462 k~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~  541 (657)
                      ++.|+.-+..|+..++.+.+..++.+...+        -+  .+-..++.+|...+++++..+-+-..+-..++..+...
T Consensus      1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~--------~~--~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa 1652 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEK--------LA--TSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSA 1652 (1758)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------HH--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344555556665556665555554321111        00  01234566666667666655444344445566666667


Q ss_pred             HHHHHHHHHhHHHhHHHHhHHHHHh
Q 006200          542 RNLAAKMESDLKSLSDAYNSLEQTN  566 (657)
Q Consensus       542 ~~~a~~le~~l~~ls~~~~~Le~~~  566 (657)
                      +..|...+..++.|.+.|+..++-+
T Consensus      1653 ~~~A~~a~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776666554433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=90.97  E-value=30  Score=40.10  Aligned_cols=68  Identities=26%  Similarity=0.299  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          510 VETLRKDLHEASQRLEILKEE-------KAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       510 ~e~L~~~L~~~~~~~e~l~~e-------~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +...+.+|++++..++..+.+       ...++.|++..+.....+..+....+..+.+|+.++.+...++..++
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~  357 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK  357 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence            444444444444444433333       34445555555555555555555555555666666666666655544

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=90.86  E-value=21  Score=42.15  Aligned_cols=107  Identities=21%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------cchhhhhhcccc---------------
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGA------------SQSEQRASGALD---------------  506 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~------------~~~~~~~~~~~~---------------  506 (657)
                      .++.|..+.+.+..|+.....++.++..|++++...+++..            -+.++|.-....               
T Consensus       521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E  600 (961)
T KOG4673|consen  521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE  600 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888889999999999999999999988866653220            012222222222               


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHhHHHHh
Q 006200          507 ----------RVQVETLRKDLHEASQRLEILKEEK--------AQIESDSSMYRNLAAKMESDLKSLSDAYN  560 (657)
Q Consensus       507 ----------~~q~e~L~~~L~~~~~~~e~l~~e~--------~~~eae~~~~~~~a~~le~~l~~ls~~~~  560 (657)
                                +.++++|++.|+++..+.+.+-.+.        +++++=.+.+.+.+..|+..=++|++++.
T Consensus       601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~  672 (961)
T KOG4673|consen  601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLS  672 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence                      3455555555555555555544432        66777666666777777765555554444

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=90.81  E-value=2.6  Score=47.05  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHhHhHHHHHhhhh
Q 006200          595 AREEAQKESEAELNDLLVCLGQE  617 (657)
Q Consensus       595 ~~~e~~~~~~~e~~dLl~ll~d~  617 (657)
                      ++++.+.+++..+.|||+-|.-+
T Consensus       432 s~d~~I~dLqEQlrDlmf~le~q  454 (493)
T KOG0804|consen  432 SKDEKITDLQEQLRDLMFFLEAQ  454 (493)
T ss_pred             HHHHHHHHHHHHHHhHheehhhh
Confidence            56677888999999998877543

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.69  E-value=4.7  Score=34.85  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=24.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE  485 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~  485 (657)
                      |.++.+.|.+.|..--..|.=|+-++..|+++
T Consensus         2 S~EvleqLE~KIqqAvdtI~LLqmEieELKek   33 (79)
T PRK15422          2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEK   33 (79)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888887777777777773

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=90.66  E-value=24  Score=36.95  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=18.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      |+++-.-|.+++..-.....+|+.+|..|+-++
T Consensus        43 SrE~EaelesqL~q~etrnrdl~t~nqrl~~E~   75 (333)
T KOG1853|consen   43 SREIEAELESQLDQLETRNRDLETRNQRLTTEQ   75 (333)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666665555555555555555555555555544

>TIGR00606 rad50 rad50

Probab=90.54  E-value=14  Score=47.58  Aligned_cols=13  Identities=31%  Similarity=0.501  Sum_probs=7.0

Q ss_pred             HHHHHHhHHHHHH
Q 006200          414 VDIIKSLESSIRE  426 (657)
Q Consensus       414 v~f~K~n~~~I~~  426 (657)
                      .+|.+++...+.+
T Consensus       694 ~~f~~~L~~~~~~  706 (1311)
T TIGR00606       694 QEFISDLQSKLRL  706 (1311)
T ss_pred             HHHHHHHHHHHhc
Confidence            3566666555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.44  E-value=6.2  Score=39.45  Aligned_cols=77  Identities=23%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             HhHHHHHHHHHHHHhc-ChhhHHHhhccccCCC-CccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHh
Q 006200           81 AVRCAALRCISDIIAA-HPKNRDVLASKVLGEE-PQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTS  158 (657)
Q Consensus        81 ~Ir~~AL~t~adlIrg-n~~nQ~~fa~~~vp~~-p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~  158 (657)
                      .||..||.++..+++. .+..=..+=..-+|.. ....+....|+..+++..++..|+||+..+.+.+++-   +.+|.+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs---k~~L~~   77 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS---KPFLAQ   77 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc---HHHHHH
Confidence            4899999999999998 6666555666667764 1124455688888999999999999999999999984   667665


Q ss_pred             hh
Q 006200          159 TL  160 (657)
Q Consensus       159 tl  160 (657)
                      .=
T Consensus        78 Ae   79 (182)
T PF13251_consen   78 AE   79 (182)
T ss_pred             HH
Confidence            44

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.08  E-value=2.8  Score=44.14  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      ...|++...-+....+.++..+.++..++..-...++-+|..|.+....++.|++++.++..|+...+.
T Consensus        62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~  130 (307)
T PF10481_consen   62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ  130 (307)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444333444444444444444444444445555556666667777788888888888877665

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=90.03  E-value=17  Score=45.47  Aligned_cols=20  Identities=10%  Similarity=0.406  Sum_probs=15.9

Q ss_pred             hhcchhhHHHHHHHHhcccccccC
Q 006200          343 QKVGLTSYFLKFDEMQKSFLFSSA  366 (657)
Q Consensus       343 ~RiG~d~y~~kl~~lr~~~~f~~~  366 (657)
                      .|+|+.-    +..|+.||.|...
T Consensus       325 ~RLgrng----iedik~HpFF~g~  344 (1317)
T KOG0612|consen  325 VRLGRNG----IEDIKNHPFFEGI  344 (1317)
T ss_pred             hhccccc----HHHHHhCccccCC
Confidence            5888754    6789999999953

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.95  E-value=12  Score=40.66  Aligned_cols=52  Identities=19%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      .++.++...+.+++..++...+++..+..+...++.++.+...+.+++++++
T Consensus       213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555555555555555555555444444444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.89  E-value=14  Score=43.58  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=13.1

Q ss_pred             HHHhhcCC-hhhH---HHHHhhhc
Q 006200          142 FNSFCEKN-PDGQ---AMLTSTLI  161 (657)
Q Consensus       142 f~ayl~~N-~~~q---~~L~~tl~  161 (657)
                      ++.|||.| .++|   .||+..|.
T Consensus        86 yq~fLYp~e~~~R~ll~fLiekLP  109 (594)
T PF05667_consen   86 YQTFLYPNEKDLRRLLMFLIEKLP  109 (594)
T ss_pred             chhhccCChHHHHHHHHHHHHHCC
Confidence            46788888 4555   47776663

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=89.81  E-value=16  Score=41.50  Aligned_cols=67  Identities=13%  Similarity=0.109  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHH
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLE  525 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e  525 (657)
                      -+..++..+..-..++..++.++..+..++..........  ..+.....+.++.+++.++.++...+.
T Consensus       205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~l~~~y~  271 (498)
T TIGR03007       205 EISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG--SSVANSELDGRIEALEKQLDALRLRYT  271 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc--cccCCCchHHHHHHHHHHHHHHHHHhc
Confidence            3455666666666667777777777776654322111100  011112335667777777777665443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=89.75  E-value=36  Score=38.29  Aligned_cols=9  Identities=33%  Similarity=0.457  Sum_probs=3.7

Q ss_pred             HHHHHcCch
Q 006200          626 ARLLELGED  634 (657)
Q Consensus       626 ~~L~~lg~~  634 (657)
                      .++++|+..
T Consensus       224 ~~l~eL~~~  232 (420)
T COG4942         224 KKLEELRAN  232 (420)
T ss_pred             HHHHHHHhH
Confidence            344444433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.74  E-value=14  Score=36.47  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          462 KAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       462 k~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      +..+....+++.+++.++..+..++
T Consensus        87 ~~~l~~l~~el~~l~~~~~~~~~~l  111 (191)
T PF04156_consen   87 QQQLQQLQEELDQLQERIQELESEL  111 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=89.65  E-value=20  Score=41.59  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          460 RLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      +.|..|.+..++..+++.++..|..++
T Consensus        96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~  122 (546)
T KOG0977|consen   96 TARKLLDETARERAKLEIEITKLREEL  122 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            456666666666666666665555543

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.63  E-value=37  Score=40.25  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKI  489 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~  489 (657)
                      -|..|+...+.--..+++|...+..|+.++...
T Consensus        37 ev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~   69 (617)
T PF15070_consen   37 EVRTLKEEKEHDISRVQELERSLSELKNQMAEP   69 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            344566666666666777777777776665433

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.57  E-value=3.2  Score=45.28  Aligned_cols=92  Identities=17%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             chhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhcc-
Q 006200           51 HKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRT-  129 (657)
Q Consensus        51 ~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~-  129 (657)
                      |.+..|..+...|.+..|+...=.  ..|..+|+.||.+++-+||.|++.|..|-.+.=         ..+|-.. +.. 
T Consensus       154 NNP~~Qe~v~E~~~L~~Ll~~ls~--~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G---------~~~L~~v-l~~~  221 (342)
T KOG2160|consen  154 NNPKSQEQVIELGALSKLLKILSS--DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG---------YQVLRDV-LQSN  221 (342)
T ss_pred             cCHHHHHHHHHcccHHHHHHHHcc--CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC---------HHHHHHH-HHcC
Confidence            334789999999999999987663  469999999999999999999999999987621         2333333 334 


Q ss_pred             -CchhHHhHHHHHHHHhhcCChhhHH
Q 006200          130 -SSMQEFLAADRIFNSFCEKNPDGQA  154 (657)
Q Consensus       130 -~~~~~r~AA~~cf~ayl~~N~~~q~  154 (657)
                       .++....=|...+..++..+..-+.
T Consensus       222 ~~~~~lkrK~~~Ll~~Ll~~~~s~~d  247 (342)
T KOG2160|consen  222 NTSVKLKRKALFLLSLLLQEDKSDED  247 (342)
T ss_pred             CcchHHHHHHHHHHHHHHHhhhhhhh
Confidence             3445555566666666655544443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=89.50  E-value=26  Score=40.93  Aligned_cols=31  Identities=10%  Similarity=0.023  Sum_probs=15.2

Q ss_pred             HHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200          601 KESEAELNDLLVCLGQEQSKVEKLSARLLEL  631 (657)
Q Consensus       601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l  631 (657)
                      ..++++-.+.---+.....++...++.++..
T Consensus       407 ~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~  437 (569)
T PRK04778        407 QGLRKDELEAREKLERYRNKLHEIKRYLEKS  437 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444444444445555555566555554

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.42  E-value=15  Score=35.14  Aligned_cols=18  Identities=28%  Similarity=0.320  Sum_probs=10.8

Q ss_pred             HHHHhHhHHHHHHHHHcC
Q 006200          562 LEQTNFHLEKEVKALKSG  579 (657)
Q Consensus       562 Le~~~~~le~e~~~lr~~  579 (657)
                      .+.++.+.+.|+..|++.
T Consensus       131 ~~~e~rkke~E~~kLk~r  148 (151)
T PF11559_consen  131 YEHELRKKEREIEKLKER  148 (151)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345666666666666643

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=89.33  E-value=27  Score=35.45  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 006200          461 LKAFVEKQCSEIQKLLGRNATL  482 (657)
Q Consensus       461 lk~~i~~Q~~eiq~L~~~~~~L  482 (657)
                      |+..|++-...|.+++..++..
T Consensus        28 l~q~ird~e~~l~~a~~~~a~~   49 (221)
T PF04012_consen   28 LEQAIRDMEEQLRKARQALARV   49 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555444433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=89.21  E-value=32  Score=36.18  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhHhHHHHHhh---------------hhhhhHHHHHHHHHHcCchhhhhhccCCCCCCCCCCCc
Q 006200          596 REEAQKESEAELNDLLVCLG---------------QEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDE  653 (657)
Q Consensus       596 ~~e~~~~~~~e~~dLl~ll~---------------d~~~K~~~~k~~L~~lg~~v~~~~~~~~~~~~~~~~~~  653 (657)
                      -.++++..+.+++|.|.=|.               .+.+++.++ .+|+.--.-|+..-.|..+..+.-|+|.
T Consensus       251 ~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I-q~l~k~~~q~sqav~d~~~~~~a~~~~~  322 (330)
T KOG2991|consen  251 QSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI-QRLKKGLEQVSQAVGDKKDEVDAIDEDA  322 (330)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccccccCCcc
Confidence            44667888888888887665               233333222 2444444455655555555554444443

>TIGR00606 rad50 rad50

Probab=89.19  E-value=24  Score=45.42  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=21.6

Q ss_pred             HHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200          599 AQKESEAELNDLLVCLGQEQSKVEKLSARLLEL  631 (657)
Q Consensus       599 ~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l  631 (657)
                      .+..++.+..++..-.+.++.+...|...+.+.
T Consensus       334 el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~  366 (1311)
T TIGR00606       334 ERRLLNQEKTELLVEQGRLQLQADRHQEHIRAR  366 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666677777777777777776666655443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=89.14  E-value=30  Score=45.37  Aligned_cols=123  Identities=22%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCc--chhhhhhc-cccHHHHHHHHHHHHHHHHHHHHH
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG------GDGAS--QSEQRASG-ALDRVQVETLRKDLHEASQRLEIL  527 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~------~~~~~--~~~~~~~~-~~~~~q~e~L~~~L~~~~~~~e~l  527 (657)
                      ..+++...+..+...|+.|..++..|..++....      +.+.+  ....++.. .....++..|+.+|..+...+.++
T Consensus       852 ~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~y  931 (1822)
T KOG4674|consen  852 ELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREY  931 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666677777777777777777764332      11100  00011100 001223333455554444444444


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200          528 KEEK----AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG  579 (657)
Q Consensus       528 ~~e~----~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~  579 (657)
                      +++.    ..++.....+-+.-.+.++++..+...+.+||.++..|++++..++..
T Consensus       932 qe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e  987 (1822)
T KOG4674|consen  932 QEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREE  987 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433    222333333333334555566666677777777777777777777743

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=89.13  E-value=14  Score=40.05  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG  490 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~  490 (657)
                      .+-....++-|++...+.++|+.++..|..+|.+.+
T Consensus        84 ~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~  119 (401)
T PF06785_consen   84 DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVR  119 (401)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            445667889999999999999999999999996655

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=89.10  E-value=25  Score=38.22  Aligned_cols=18  Identities=22%  Similarity=0.348  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhHhHHHH
Q 006200          595 AREEAQKESEAELNDLLV  612 (657)
Q Consensus       595 ~~~e~~~~~~~e~~dLl~  612 (657)
                      .|+..+-++++..+|||.
T Consensus       198 kRQ~yI~~LEsKVqDLm~  215 (401)
T PF06785_consen  198 KRQAYIGKLESKVQDLMY  215 (401)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455556667777777664

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=89.04  E-value=3.8  Score=34.98  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          460 RLKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       460 ~lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      ++...|+++|..|+.|..+-..|..
T Consensus         2 sl~~~l~EKDe~Ia~L~eEGekLSk   26 (74)
T PF12329_consen    2 SLEKKLAEKDEQIAQLMEEGEKLSK   26 (74)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3567899999999999988777766

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=88.97  E-value=24  Score=46.24  Aligned_cols=100  Identities=19%  Similarity=0.185  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          465 VEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNL  544 (657)
Q Consensus       465 i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~  544 (657)
                      |-++..++.-|+.-|..|.+++...-.        +  -...+.+++.|+..+.-.+..+.+++.+.....+++..|+.-
T Consensus      1217 i~~~v~~vNll~EsN~~LRee~~~~~~--------k--~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e 1286 (1822)
T KOG4674|consen 1217 ILEKVEEVNLLRESNKVLREENEANLE--------K--IQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEE 1286 (1822)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH--------H--HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666665432210        0  012234444444444444444555555555555555555555


Q ss_pred             HHHHHHhHHHhHHH--------HhHHHHHhHhHHHHHH
Q 006200          545 AAKMESDLKSLSDA--------YNSLEQTNFHLEKEVK  574 (657)
Q Consensus       545 a~~le~~l~~ls~~--------~~~Le~~~~~le~e~~  574 (657)
                      ..+|..+...|-.+        |+.|..++.+|++|+.
T Consensus      1287 ~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1287 NDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            55555444444333        3334445555555544

>PRK11281 hypothetical protein; Provisional

Probab=88.96  E-value=29  Score=43.82  Aligned_cols=72  Identities=10%  Similarity=0.052  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHhH--------HHHhHHHHHhHhHHH
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEK-------AQIESDSSMYRNLAAKMESDLKSLS--------DAYNSLEQTNFHLEK  571 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~-------~~~eae~~~~~~~a~~le~~l~~ls--------~~~~~Le~~~~~le~  571 (657)
                      +..+.++.++|++.++.+..++.+.       .+.++.+...+...++.++.+++..        .+...|++|...++.
T Consensus       127 Eq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~  206 (1113)
T PRK11281        127 ESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNA  206 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence            3444455555555555555554444       3333344444444444444443321        223334555555555


Q ss_pred             HHHHHHc
Q 006200          572 EVKALKS  578 (657)
Q Consensus       572 e~~~lr~  578 (657)
                      ++...|.
T Consensus       207 ~~~~~~~  213 (1113)
T PRK11281        207 QNDLQRK  213 (1113)
T ss_pred             HHHHHHH
Confidence            5555444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.91  E-value=10  Score=43.46  Aligned_cols=28  Identities=25%  Similarity=0.151  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      .+..|+.++++|-++|++++++...+.+
T Consensus       589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e  616 (741)
T KOG4460|consen  589 HVKLLCDQKKKQLQDLSYCREERKSLRE  616 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777776666555

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=6.9  Score=45.47  Aligned_cols=88  Identities=16%  Similarity=0.276  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDS  538 (657)
Q Consensus       459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~  538 (657)
                      .+++..+.+..+.++.|+.+|..|+..+.+.                 +++++.|+++|++...+..    ...+...|+
T Consensus       418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~-----------------k~eie~L~~~l~~~~r~~~----~~~~~~rei  476 (652)
T COG2433         418 TVYEKRIKKLEETVERLEEENSELKRELEEL-----------------KREIEKLESELERFRREVR----DKVRKDREI  476 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH----HHHhhhHHH
Confidence            3466667777777777777777777755332                 3456666666666655432    112223333


Q ss_pred             HHHHHHHHHHHHhHHHhHHHHhHHHHHhH
Q 006200          539 SMYRNLAAKMESDLKSLSDAYNSLEQTNF  567 (657)
Q Consensus       539 ~~~~~~a~~le~~l~~ls~~~~~Le~~~~  567 (657)
                      ......+..|+..|+.-.+..++|+.++.
T Consensus       477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~  505 (652)
T COG2433         477 RARDRRIERLEKELEEKKKRVEELERKLA  505 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444443333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.84  E-value=21  Score=33.60  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDS  538 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~  538 (657)
                      -..+..++.++...+..+..++.+....+..+
T Consensus        58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l   89 (132)
T PF07926_consen   58 IKELQQLREELQELQQEINELKAEAESAKAEL   89 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666665555555554444444333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=88.83  E-value=37  Score=36.47  Aligned_cols=113  Identities=18%  Similarity=0.267  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC---CCCCC
Q 006200          508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG---GSSVS  584 (657)
Q Consensus       508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~---~~~~~  584 (657)
                      ..+..|+.+|+..++..+. ..+...+.+++..++..+..+...+..|+....+.-.+...+-++..++|..   .|   
T Consensus       138 q~I~~L~k~le~~~k~~e~-~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h---  213 (294)
T COG1340         138 QKIKELRKELEDAKKALEE-NEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH---  213 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            4566677777777766654 6667777888888888888888877777765544444433333444444421   11   


Q ss_pred             cccH-HHH-HHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHH
Q 006200          585 SPDV-EAI-KAEAREEAQKESEAELNDLLVCLGQEQSKVEKLS  625 (657)
Q Consensus       585 ~~~l-~~~-~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k  625 (657)
                       .++ +.. ++..--+++.+++.++.|+...+..+..+....+
T Consensus       214 -e~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~  255 (294)
T COG1340         214 -EEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK  255 (294)
T ss_pred             -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111 111 2235556788899999998888876655544443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.72  E-value=29  Score=41.25  Aligned_cols=81  Identities=20%  Similarity=0.198  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          468 QCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAK  547 (657)
Q Consensus       468 Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~  547 (657)
                      ...++.++..++..++.++.....        ....+....++..+...++++++.+..++.++..++.+++.++..+.+
T Consensus       389 ~~~~~~~~~~~~~~~e~el~~l~~--------~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~  460 (650)
T TIGR03185       389 LQDAKSQLLKELRELEEELAEVDK--------KISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA  460 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555533321        001112234666677777777766666666666666666666666655


Q ss_pred             HHHhHHHhH
Q 006200          548 MESDLKSLS  556 (657)
Q Consensus       548 le~~l~~ls  556 (657)
                      ++..+.++.
T Consensus       461 ~~~~~~~~~  469 (650)
T TIGR03185       461 LRKTLDEKT  469 (650)
T ss_pred             HHHHHHHHH
Confidence            555554433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.70  E-value=23  Score=33.97  Aligned_cols=10  Identities=30%  Similarity=0.292  Sum_probs=3.9

Q ss_pred             hhhhHHHHHH
Q 006200          617 EQSKVEKLSA  626 (657)
Q Consensus       617 ~~~K~~~~k~  626 (657)
                      ++.|...+..
T Consensus       127 ~E~k~eel~~  136 (143)
T PF12718_consen  127 WEEKYEELEE  136 (143)
T ss_pred             HHHHHHHHHH
Confidence            3444433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.70  E-value=14  Score=35.27  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      .+++.+++..+..+...+.+...+..++..++..+....+|+..++
T Consensus        76 ~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk  121 (151)
T PF11559_consen   76 ERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK  121 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444444444444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.33  E-value=6  Score=38.65  Aligned_cols=69  Identities=22%  Similarity=0.358  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCC
Q 006200          508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGS  581 (657)
Q Consensus       508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~  581 (657)
                      .++..+..++.+++.++..++.+...+++|+..+.+.-..     ..|...+++|+.++..+++.+..++++..
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~~  140 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGSK  140 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344444444444444444444444444444443322211     22456677788888888888888887544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.28  E-value=23  Score=33.35  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=10.5

Q ss_pred             HHHHHHhHhHHHHHhhhhhhhHHH
Q 006200          600 QKESEAELNDLLVCLGQEQSKVEK  623 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K~~~  623 (657)
                      ++.++++++++---..|+...++-
T Consensus       100 k~~le~e~~~~~~r~~dL~~QN~l  123 (132)
T PF07926_consen  100 KEQLEKELSELEQRIEDLNEQNKL  123 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.19  E-value=10  Score=41.11  Aligned_cols=67  Identities=22%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +.|+++-++..++++.++.+...++.+-..+-...+.++.++....+...+++.+......++..||
T Consensus        67 ~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen   67 EELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444555555555555566666666666666777777777777777777787777

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=88.16  E-value=14  Score=36.48  Aligned_cols=53  Identities=19%  Similarity=0.328  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHh--HHHHHhHhHHHHHHHHHc
Q 006200          526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYN--SLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~--~Le~~~~~le~e~~~lr~  578 (657)
                      .|+.+++++++.+..++++++-++++++.|+.++.  ++..++..|.+|++.-++
T Consensus        83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~e  137 (201)
T KOG4603|consen   83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRE  137 (201)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            34566677777777788888888888888876543  344555566666655543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=88.03  E-value=17  Score=38.68  Aligned_cols=27  Identities=15%  Similarity=0.367  Sum_probs=16.0

Q ss_pred             hHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          551 DLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       551 ~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      .+......|..|-.-...|+.|+++.|
T Consensus       277 ~~~~~~~ey~~Ll~~K~~Ld~EIatYR  303 (312)
T PF00038_consen  277 EMARQLREYQELLDVKLALDAEIATYR  303 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            333333455666666666777777766

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.81  E-value=24  Score=36.68  Aligned_cols=62  Identities=21%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          516 DLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       516 ~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      -|++..+..+.|..|+..+..++....+-++.||.-++++...-+.....+.++.+|...|+
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk   94 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK   94 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555554444444444444444443333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=87.73  E-value=41  Score=43.53  Aligned_cols=23  Identities=4%  Similarity=0.123  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHH
Q 006200          532 AQIESDSSMYRNLAAKMESDLKS  554 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~  554 (657)
                      ..+...+..|+.....|+....+
T Consensus       847 ~~~~~aL~~y~~~l~~l~~~~~~  869 (1353)
T TIGR02680       847 EAVGLALKRFGDHLHTLEVAVRE  869 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666665544433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.71  E-value=56  Score=39.98  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=16.5

Q ss_pred             HHHhHHHHHhHhHHHHHHHHHc
Q 006200          557 DAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       557 ~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      ....+||++|.||..-+-.+|.
T Consensus       368 ~qfkqlEqqN~rLKdalVrLRD  389 (1243)
T KOG0971|consen  368 YQFKQLEQQNARLKDALVRLRD  389 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            4566788888888887777774

>PRK10698 phage shock protein PspA; Provisional

Probab=87.42  E-value=38  Score=34.90  Aligned_cols=22  Identities=5%  Similarity=0.202  Sum_probs=10.6

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHH
Q 006200          609 DLLVCLGQEQSKVEKLSARLLE  630 (657)
Q Consensus       609 dLl~ll~d~~~K~~~~k~~L~~  630 (657)
                      +-+--|...++|+.+..++-..
T Consensus       163 ~a~~~f~rmE~ki~~~Ea~aea  184 (222)
T PRK10698        163 EAMARFESFERRIDQMEAEAES  184 (222)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhH
Confidence            3444444555555555544433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=87.30  E-value=38  Score=40.16  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG  490 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~  490 (657)
                      +..+.+.+....++......++..|..+|....
T Consensus        31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk   63 (617)
T PF15070_consen   31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELK   63 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555566666666667777665544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=87.06  E-value=5.1  Score=35.03  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             HHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhH
Q 006200           58 VLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLA  137 (657)
Q Consensus        58 ~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~A  137 (657)
                      .+.+.|++..|+.+... .  -.++|..|+.+++.+..+++.....|.+..+      .|.+..+    ++.++...+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~-~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~------i~~l~~~----l~~~~~~v~~~   68 (120)
T cd00020           2 AVIQAGGLPALVSLLSS-S--DENVQREAAWALSNLSAGNNDNIQAVVEAGG------LPALVQL----LKSEDEEVVKA   68 (120)
T ss_pred             hHHHcCChHHHHHHHHc-C--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC------hHHHHHH----HhCCCHHHHHH
Confidence            35788999999998873 3  3789999999999999998888887765322      3333333    23456778889


Q ss_pred             HHHHHHHhhcCChhhHHHHH
Q 006200          138 ADRIFNSFCEKNPDGQAMLT  157 (657)
Q Consensus       138 A~~cf~ayl~~N~~~q~~L~  157 (657)
                      |++++..+..+++..+..+.
T Consensus        69 a~~~L~~l~~~~~~~~~~~~   88 (120)
T cd00020          69 ALWALRNLAAGPEDNKLIVL   88 (120)
T ss_pred             HHHHHHHHccCcHHHHHHHH
Confidence            99999999998876665444

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=87.03  E-value=52  Score=39.41  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=27.0

Q ss_pred             HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhh
Q 006200          600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVE  636 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~  636 (657)
                      ..+.+.+++++---.-..++..++++.+|...|-.-+
T Consensus       589 ~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~  625 (698)
T KOG0978|consen  589 YAELELELEIEKFKRKRLEEELERLKRKLERLKKEES  625 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4556677777777777778888888888877765443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=86.98  E-value=21  Score=38.78  Aligned_cols=48  Identities=13%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +++....++...++...+++..+..+...++....+...+.+++.+++
T Consensus       212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae  259 (312)
T smart00787      212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE  259 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=86.93  E-value=59  Score=39.63  Aligned_cols=85  Identities=20%  Similarity=0.232  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          467 KQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAA  546 (657)
Q Consensus       467 ~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~  546 (657)
                      +...-|+.+++++..+..++.+.++..          -..+.+.++|+.++.+......+++.-...    ++...+.+.
T Consensus       355 ear~~~~q~~~ql~~le~~~~e~q~~~----------qe~~~e~eqLr~elaql~a~r~q~eka~~~----~ee~e~~~l  420 (980)
T KOG0980|consen  355 EARRRIEQYENQLLALEGELQEQQREA----------QENREEQEQLRNELAQLLASRTQLEKAQVL----VEEAENKAL  420 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHH
Confidence            444455555666666666554433210          011333345555544433333322211111    233444455


Q ss_pred             HHHHhHHHhHHHHhHHHHH
Q 006200          547 KMESDLKSLSDAYNSLEQT  565 (657)
Q Consensus       547 ~le~~l~~ls~~~~~Le~~  565 (657)
                      .+++..+++..+|..|.++
T Consensus       421 ~~e~ry~klkek~t~l~~~  439 (980)
T KOG0980|consen  421 AAENRYEKLKEKYTELRQE  439 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=86.79  E-value=15  Score=46.91  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHH
Q 006200          511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE  570 (657)
Q Consensus       511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le  570 (657)
                      ++|+++++.+...+..+..+...++..+......+..+...+..+...+...+....++.
T Consensus       603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (1201)
T PF12128_consen  603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK  662 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            355555555555555444444445555544444444444444444444444443333333

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=86.74  E-value=46  Score=35.24  Aligned_cols=36  Identities=14%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             hcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 006200          431 VYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLL  476 (657)
Q Consensus       431 ~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~  476 (657)
                      +...|+.+-+..          ....--++||.+|..+-+++...+
T Consensus        31 ll~~~~~~~~~~----------d~~~~~~q~~~~i~~k~~e~r~~r   66 (338)
T KOG3647|consen   31 LLTSPGQNEADN----------DEEDQRDQYRSLIGDKIEELRKAR   66 (338)
T ss_pred             HHhCcCcCCCCC----------CcchHHHHHHHHHHHHHHHHHHHH
Confidence            356677754422          122345789999888877765443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=86.62  E-value=20  Score=38.92  Aligned_cols=101  Identities=21%  Similarity=0.273  Sum_probs=63.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-Ccchhhhhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDG-ASQSEQRAS-GALDRVQVETLRKDLHEASQRLEILKEEK  531 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~-~~~~~~~~~-~~~~~~q~e~L~~~L~~~~~~~e~l~~e~  531 (657)
                      +++-..+|+..+..-.+.+.+++.++..|.+.+.+..... ...+..-+. ....-.|++.++.+.+++...+..+-+|+
T Consensus        77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEk  156 (319)
T PF09789_consen   77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEK  156 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555566667777777777777777777777776544211 111000000 01223456666666666666666677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHH
Q 006200          532 AQIESDSSMYRNLAAKMESDLKS  554 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~  554 (657)
                      ..+..|-..|+..+.++..+|..
T Consensus       157 eEl~~ERD~yk~K~~RLN~ELn~  179 (319)
T PF09789_consen  157 EELVTERDAYKCKAHRLNHELNY  179 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876654

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=86.44  E-value=58  Score=38.25  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME-SDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le-~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      ..++.-+-.+|+-+++++..++.|...++.+..........-+ .++.++...+++.+.++.+|..+++.++.
T Consensus       234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~  306 (629)
T KOG0963|consen  234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA  306 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3455555566666666666666666555555444322222221 24556666777778888888888777763

>PRK01156 chromosome segregation protein; Provisional

Probab=86.40  E-value=54  Score=40.29  Aligned_cols=20  Identities=5%  Similarity=0.008  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 006200          530 EKAQIESDSSMYRNLAAKME  549 (657)
Q Consensus       530 e~~~~eae~~~~~~~a~~le  549 (657)
                      ++..++.+.+..+.....++
T Consensus       219 ~i~~~~~el~~~~~~l~~l~  238 (895)
T PRK01156        219 EIERLSIEYNNAMDDYNNLK  238 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=86.38  E-value=21  Score=40.67  Aligned_cols=20  Identities=10%  Similarity=-0.011  Sum_probs=10.3

Q ss_pred             HHHHHhhhhhhhHHHHHHHH
Q 006200          609 DLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       609 dLl~ll~d~~~K~~~~k~~L  628 (657)
                      .+..|--|.+.+.+.|...+
T Consensus       356 el~~L~Re~~~~~~~Y~~l~  375 (498)
T TIGR03007       356 ELTQLNRDYEVNKSNYEQLL  375 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=86.19  E-value=27  Score=37.87  Aligned_cols=80  Identities=18%  Similarity=0.166  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          463 AFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYR  542 (657)
Q Consensus       463 ~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~  542 (657)
                      ..+..-+.-+..++.+...|..++.+.+....      ....-...++..++.+|.+....++..+.+...++.++..+.
T Consensus       165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~------e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~  238 (312)
T smart00787      165 KELELLNSIKPKLRDRKDALEEELRQLKQLED------ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE  238 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444445555555555544432110      000112334444555555444444444444444444444333


Q ss_pred             HHHHHH
Q 006200          543 NLAAKM  548 (657)
Q Consensus       543 ~~a~~l  548 (657)
                      ..++..
T Consensus       239 ~~I~~~  244 (312)
T smart00787      239 SKIEDL  244 (312)
T ss_pred             HHHHHH
Confidence            333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=86.16  E-value=45  Score=41.73  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=11.5

Q ss_pred             hHHHHHhhhhhhhHHHHHH
Q 006200          608 NDLLVCLGQEQSKVEKLSA  626 (657)
Q Consensus       608 ~dLl~ll~d~~~K~~~~k~  626 (657)
                      +.---||.+-.+|+.+++.
T Consensus      1696 ~eA~~Ll~~a~~kl~~l~d 1714 (1758)
T KOG0994|consen 1696 TEAEKLLGQANEKLDRLKD 1714 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333455677777777664

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.04  E-value=27  Score=36.27  Aligned_cols=64  Identities=25%  Similarity=0.288  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          514 RKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +++.+.+..+......+++++..++..+...+...+++-+........+..+...|..++.++|
T Consensus        38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R  101 (230)
T PF10146_consen   38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444444444444444444444444444444444444444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.74  E-value=43  Score=35.50  Aligned_cols=48  Identities=15%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKS  554 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~  554 (657)
                      +.+++.|..++++.+..+..++.++.+.++++..+++-+..++.++..
T Consensus        51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~   98 (265)
T COG3883          51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE   98 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777777777777777777777777777777655554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.71  E-value=69  Score=38.75  Aligned_cols=27  Identities=26%  Similarity=0.225  Sum_probs=12.5

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006200          458 VKRLKAF-VEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       458 v~~lk~~-i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      +..||+. |++++..-.+++.++..|+.
T Consensus       545 ~~vlreeYi~~~~~ar~ei~~rv~~Lk~  572 (717)
T PF10168_consen  545 TKVLREEYIEKQDLAREEIQRRVKLLKQ  572 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444 44444444444555444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=85.68  E-value=19  Score=42.63  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200          452 ESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG  490 (657)
Q Consensus       452 ~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~  490 (657)
                      ......++.|...|..|+.++...+.+|.+|.++|+...
T Consensus        87 t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE  125 (916)
T KOG0249|consen   87 TSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAE  125 (916)
T ss_pred             CCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhh
Confidence            355678999999999999999999999999999986543

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=85.24  E-value=48  Score=37.54  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=21.1

Q ss_pred             HHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHH
Q 006200          598 EAQKESEAELNDLLVCLGQEQSKVEKLSARLLE  630 (657)
Q Consensus       598 e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~  630 (657)
                      +.+...+.++++.---+...+..+.+.+.+|..
T Consensus       284 ~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~  316 (457)
T TIGR01000       284 QQLAKVKQEITDLNQKLLELESKIKSLKEDSQK  316 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334556666666666666777777777766644

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.05  E-value=83  Score=36.69  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200          456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKI  489 (657)
Q Consensus       456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~  489 (657)
                      ..+..+++.|+++..|++.+++.+..|+.++...
T Consensus       294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q  327 (581)
T KOG0995|consen  294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ  327 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3677899999999999999999999999987544

>PF13514 AAA_27: AAA domain

Probab=84.94  E-value=50  Score=41.80  Aligned_cols=32  Identities=31%  Similarity=0.285  Sum_probs=16.0

Q ss_pred             HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200          600 QKESEAELNDLLVCLGQEQSKVEKLSARLLEL  631 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l  631 (657)
                      +.+++.++++|-.=+.+....+...+..|..+
T Consensus       898 l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l  929 (1111)
T PF13514_consen  898 LEELEEELEELEEELEELQEERAELEQELEAL  929 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555554444445555555555555444

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=84.61  E-value=30  Score=38.31  Aligned_cols=20  Identities=20%  Similarity=0.302  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcC
Q 006200          472 IQKLLGRNATLAEELAKIGG  491 (657)
Q Consensus       472 iq~L~~~~~~L~~~l~~~~~  491 (657)
                      +.+++.++..+..+|+..++
T Consensus        76 lddi~~qlr~~rtel~~a~~   95 (499)
T COG4372          76 LDDIRPQLRALRTELGTAQG   95 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44456666677777655544

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=84.16  E-value=78  Score=38.17  Aligned_cols=32  Identities=9%  Similarity=0.113  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKI  489 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~  489 (657)
                      +..+..++..-..+....+.+...+...+.+.
T Consensus       239 L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~  270 (754)
T TIGR01005       239 LAELNTELSRARANRAAAEGTADSVKKALQNG  270 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44455555555556666677777777766543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=83.74  E-value=12  Score=31.69  Aligned_cols=61  Identities=20%  Similarity=0.277  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200          513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL  576 (657)
Q Consensus       513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l  576 (657)
                      |...|+++++..   ..+...|+...+.++...+..+.+...|+..++.|.+++.+|.+.+..|
T Consensus         8 Ll~ale~Lq~~y---~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL   68 (70)
T PF04899_consen    8 LLSALEELQQSY---EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL   68 (70)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555666666644   4466789999999999999999998899999999999888888877665

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.58  E-value=70  Score=37.08  Aligned_cols=86  Identities=20%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCC-ccc-------HHHHHHHHHHHHHHHH
Q 006200          532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVS-SPD-------VEAIKAEAREEAQKES  603 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~-~~~-------l~~~~~~~~~e~~~~~  603 (657)
                      .-++.++..+..+..+.++.|+++..++++-..++..++.+++.++.....+. .++       ++.+.. .-+.+...+
T Consensus       362 ~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~-~y~de~~ka  440 (654)
T KOG4809|consen  362 IDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEAS-YYRDECGKA  440 (654)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHH-HHHHHHHHH
Confidence            44455555555666666667777777777777788888888888876432110 011       222111 223345678


Q ss_pred             HHhHhHHHHHhhhhh
Q 006200          604 EAELNDLLVCLGQEQ  618 (657)
Q Consensus       604 ~~e~~dLl~ll~d~~  618 (657)
                      +++.+-||.++.+.+
T Consensus       441 qaevdrlLeilkeve  455 (654)
T KOG4809|consen  441 QAEVDRLLEILKEVE  455 (654)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888899999988644

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.48  E-value=10  Score=38.94  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHH
Q 006200          511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQT  565 (657)
Q Consensus       511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~  565 (657)
                      +.|...|++.+...++++..+.+++-|.+.+.....++.-.+..|.++..+|+-.
T Consensus       152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            3444445555555555555555555555555555555555555555666655533

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=83.16  E-value=40  Score=40.52  Aligned_cols=69  Identities=17%  Similarity=0.290  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG  579 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~  579 (657)
                      +.|...|+.++.+.+.+-..+=.....+|.|.-.+++.++-+.    +-+..|+++--++.|+++|..-++.+
T Consensus        75 e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk----~sQvefE~~Khei~rl~Ee~~~l~~q  143 (717)
T PF09730_consen   75 ELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK----QSQVEFEGLKHEIKRLEEEIELLNSQ  143 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667788877776655555666777777777776666554    45566777777888888887777643

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=83.04  E-value=36  Score=38.42  Aligned_cols=47  Identities=17%  Similarity=0.138  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      ..++.+..++.+.-.-+|..+.+++.+++.+..+....+++.+.|++
T Consensus       364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k  410 (493)
T KOG0804|consen  364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK  410 (493)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444444455555566666666666666655666666654

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=82.91  E-value=76  Score=37.77  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=13.5

Q ss_pred             HHHHHhhcChHHHHHhhcCCChH
Q 006200          272 LLVTWLADCPNAVHCFLDSRPHL  294 (657)
Q Consensus       272 LL~~WL~e~p~AV~~FL~~~s~l  294 (657)
                      |+.--|.+|-.-++...++|.-|
T Consensus       443 l~~DeLaEkdE~I~~lm~EGEkL  465 (961)
T KOG4673|consen  443 LLKDELAEKDEIINQLMAEGEKL  465 (961)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHh
Confidence            33345666666666666666543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=82.80  E-value=6.2  Score=35.89  Aligned_cols=72  Identities=19%  Similarity=0.176  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHh-ccCchhHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200           82 VRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIIL-RTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTL  160 (657)
Q Consensus        82 Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L-~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl  160 (657)
                      +|..-++.+|.+...|+.+|+.+....-      .|   .+|..+. -..+|-.|--|.+|++..+.+|++.|.+|.+ |
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~G------i~---liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~-L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGG------IP---LILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ-L   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCC------hH---HHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh-c
Confidence            4778899999999999999999876633      23   3344432 3444666778999999999999999999885 4


Q ss_pred             cCC
Q 006200          161 IPQ  163 (657)
Q Consensus       161 ~p~  163 (657)
                      .|.
T Consensus        72 ~~~   74 (102)
T PF09759_consen   72 EPQ   74 (102)
T ss_pred             ccc
Confidence            443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.57  E-value=65  Score=33.48  Aligned_cols=10  Identities=20%  Similarity=0.321  Sum_probs=4.3

Q ss_pred             cCchhhhhhc
Q 006200          631 LGEDVEKLLE  640 (657)
Q Consensus       631 lg~~v~~~~~  640 (657)
                      .|-.++--.+
T Consensus       164 yg~~i~~~~~  173 (251)
T PF11932_consen  164 YGRTIEVYQG  173 (251)
T ss_pred             hCCceeEEEE
Confidence            4544444333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=82.47  E-value=59  Score=36.46  Aligned_cols=61  Identities=13%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhH
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNF  567 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~  567 (657)
                      ...+.+|+.+|++..++.+.+.+|+..+++|....++-..+.|..|+.|+....+|..+..
T Consensus        12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v   72 (459)
T KOG0288|consen   12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV   72 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666666666666667777777777777666666666666666655555543333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.33  E-value=28  Score=29.67  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          456 DYVKRLKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      ++.+.|-..|..--..|+-|+.++..|++
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke   32 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKE   32 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555554444444444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=82.12  E-value=64  Score=33.09  Aligned_cols=69  Identities=20%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      ...+..|++.|...++.++.++.++...+.++..   ....|+..-..+-.+.-++|..+..|++|++.+|+
T Consensus       142 e~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~---~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~  210 (221)
T PF05700_consen  142 EAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE---ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR  210 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777777777777666554444332   22234433334444555566777777777777663

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=82.01  E-value=56  Score=39.72  Aligned_cols=51  Identities=25%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      +..+..++++++..+++.+.++..++.....|..++.+..-++.|+..++.
T Consensus       630 E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~  680 (769)
T PF05911_consen  630 EQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQS  680 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            333444556666666666777777777777777776666666666666653

The function of this family is unknown.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.01  E-value=31  Score=37.40  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHH
Q 006200          512 TLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEK  571 (657)
Q Consensus       512 ~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~  571 (657)
                      .|.+++.+++.+.+.++.+..+.-.+...++....+++.+..++..+|.....++.+|++
T Consensus        75 ~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   75 ELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444444444444445555555555555555554444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=81.89  E-value=48  Score=41.94  Aligned_cols=10  Identities=10%  Similarity=0.049  Sum_probs=4.9

Q ss_pred             HHHHhhhhHh
Q 006200          314 AAVLLGECVI  323 (657)
Q Consensus       314 ~A~LLG~Cv~  323 (657)
                      ..||+|+|+.
T Consensus         5 ~~~~~~~~~~   14 (1109)
T PRK10929          5 ITFLMAWLLS   14 (1109)
T ss_pred             HHHHHHHHHh
Confidence            3455554444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.86  E-value=75  Score=38.35  Aligned_cols=40  Identities=10%  Similarity=0.155  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          539 SMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       539 ~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      ..-++++-.+....+.|+..++.|.-.++.|+..+...|-
T Consensus       426 ~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~  465 (1118)
T KOG1029|consen  426 NREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV  465 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence            3333444444444444555555555555555555544443

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.71  E-value=36  Score=39.29  Aligned_cols=44  Identities=16%  Similarity=0.119  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 006200          513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS  556 (657)
Q Consensus       513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls  556 (657)
                      |+.....+......+..++..++-.++.-++..++|+.+|.++.
T Consensus       364 lkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh  407 (654)
T KOG4809|consen  364 LKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH  407 (654)
T ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444455555555555666666666666654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=81.67  E-value=73  Score=38.18  Aligned_cols=34  Identities=21%  Similarity=0.169  Sum_probs=19.3

Q ss_pred             HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCc
Q 006200          600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGE  633 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~  633 (657)
                      ....++.++|+-...++....+...+..++.+-.
T Consensus       575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE  608 (698)
T KOG0978|consen  575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE  608 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666555554444433

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=81.50  E-value=30  Score=31.06  Aligned_cols=60  Identities=22%  Similarity=0.344  Sum_probs=36.6

Q ss_pred             HHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200          414 VDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG  490 (657)
Q Consensus       414 v~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~  490 (657)
                      ++||++|...++.++..  +. ...              ..-+-+-.|-..-+.-..+++.|+.+-..++.++++..
T Consensus         4 ik~ir~n~e~v~~~l~~--R~-~~~--------------~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~   63 (108)
T PF02403_consen    4 IKLIRENPEEVRENLKK--RG-GDE--------------EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLK   63 (108)
T ss_dssp             HHHHHHHHHHHHHHHHH--TT-CCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCHHHHHHHHHH--cC-CCH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            47889999999998852  21 100              11112223445566666777777777777777765554

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=81.32  E-value=1.8e+02  Score=37.82  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=14.6

Q ss_pred             CcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 006200          453 SDKDYVKRLKAFVE---KQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       453 ~s~~~v~~lk~~i~---~Q~~eiq~L~~~~~~L~~  484 (657)
                      .+...|..+.+-++   .....|++++.++..|..
T Consensus       217 l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~  251 (1353)
T TIGR02680       217 LDDDELTDVADALEQLDEYRDELERLEALERALRN  251 (1353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555655554433   333344444444444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=81.22  E-value=72  Score=33.06  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHh
Q 006200          528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFH  568 (657)
Q Consensus       528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~  568 (657)
                      +.....+++++........+|+..+..|..+|.++++....
T Consensus        98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~  138 (225)
T COG1842          98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA  138 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555544333

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=80.92  E-value=59  Score=39.68  Aligned_cols=34  Identities=15%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      ...++|.+=++.+.++..++.++-.++.....++
T Consensus       499 lp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~  532 (782)
T PRK00409        499 LPENIIEEAKKLIGEDKEKLNELIASLEELEREL  532 (782)
T ss_pred             cCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            6788999999999988888888777766655543

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=80.91  E-value=41  Score=31.47  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          514 RKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME  549 (657)
Q Consensus       514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le  549 (657)
                      -.++.+++.++..+-.++..+++++........+++
T Consensus        12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele   47 (119)
T COG1382          12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE   47 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444455555555555444444444

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=80.79  E-value=0.51  Score=57.62  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=0.0

Q ss_pred             HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhh
Q 006200          600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEK  637 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~  637 (657)
                      +..++.+.+.|-.-+.+.......+...|..+-.++..
T Consensus       266 l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~  303 (859)
T PF01576_consen  266 LRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQ  303 (859)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence            45566666666666666666666666666555544443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=80.55  E-value=1.2e+02  Score=35.22  Aligned_cols=13  Identities=15%  Similarity=0.289  Sum_probs=7.0

Q ss_pred             HHHHHHhcccccc
Q 006200          216 QCKERVLRIELEA  228 (657)
Q Consensus       216 ~~Ke~al~V~l~~  228 (657)
                      ..|+.+.+|..+.
T Consensus       134 ~~k~EL~~lr~e~  146 (522)
T PF05701_consen  134 SVKQELEKLRQEL  146 (522)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455566665443

Several sequences in this family are described as being myosin heavy chain-like.

>PRK11281 hypothetical protein; Provisional

Probab=80.46  E-value=75  Score=40.33  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200          461 LKAFVEKQCSEIQKLLGRNATLAEELAK  488 (657)
Q Consensus       461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~  488 (657)
                      |...+.+-..++++.+.+++.+..++..
T Consensus       126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~  153 (1113)
T PRK11281        126 LESRLAQTLDQLQNAQNDLAEYNSQLVS  153 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555556666666666666666666543

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.43  E-value=35  Score=35.45  Aligned_cols=26  Identities=19%  Similarity=0.118  Sum_probs=10.8

Q ss_pred             hHHHHHhhhhhhh-HHHHHHHHHHcCc
Q 006200          608 NDLLVCLGQEQSK-VEKLSARLLELGE  633 (657)
Q Consensus       608 ~dLl~ll~d~~~K-~~~~k~~L~~lg~  633 (657)
                      +.|--.|++-+-. ..|||+-|..+..
T Consensus       134 ~~L~~~l~~~dv~~~ek~r~vlea~~~  160 (251)
T PF11932_consen  134 ARLRAMLDDADVSLAEKFRRVLEAYQI  160 (251)
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence            3344444443322 2355554444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=80.38  E-value=62  Score=31.79  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 006200          459 KRLKAFVEKQCSEIQKLLGRNAT  481 (657)
Q Consensus       459 ~~lk~~i~~Q~~eiq~L~~~~~~  481 (657)
                      ..|.+.|++...++..|+.....
T Consensus        52 ~~l~~kIeERn~eL~~Lk~~~~~   74 (177)
T PF13870_consen   52 QQLNEKIEERNKELLKLKKKIGK   74 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888888888777766433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.21  E-value=76  Score=38.31  Aligned_cols=98  Identities=15%  Similarity=0.170  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQI  534 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~  534 (657)
                      .+-+++|+..|+++.+.++.|-.+-..|..++.+.+...          .....+...|++...+...-+.+++++...+
T Consensus       485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~----------~~~~~~~s~L~aa~~~ke~irq~ikdqldel  554 (1118)
T KOG1029|consen  485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH----------KETTQRKSELEAARRKKELIRQAIKDQLDEL  554 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc----------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555666666666666666555555555554444211          0111122334333333333344556666666


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHHHHhHH
Q 006200          535 ESDSSMYRNLAAKMESDLKSLSDAYNSL  562 (657)
Q Consensus       535 eae~~~~~~~a~~le~~l~~ls~~~~~L  562 (657)
                      +.|.++-.+-+.-..+.++.|..-|+++
T Consensus       555 skE~esk~~eidi~n~qlkelk~~~~~q  582 (1118)
T KOG1029|consen  555 SKETESKLNEIDIFNNQLKELKEDVNSQ  582 (1118)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            6666665555555556666666555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	657
3gq2_A	651	Crystal Structure Of The Dimer Of The P115 Tether G		4e-13
2w3c_A	577	Globular Head Region Of The Human General Vesicular		8e-13

>pdb|3GQ2|A Chain A, Crystal Structure Of The Dimer Of The P115 Tether Globular Head Domain Length = 651

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 154/356 (43%), Gaps = 36/356 (10%)
Query: 19  FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
           ++ QK  NL   L+ + +L+   +         K   +  L+Q+  L  +LM    +   
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 325
Query: 79  PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
           P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385
Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
              F  F  KN  GQ  + STL+P       + ++   N +S G +L  GL    S   L
Sbjct: 386 LYCFQCFLYKNQKGQGEIVSTLLP-------STIDATGNTVSAGQLLCGGLF---STDSL 435
Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAE-PLMHRMVRYLALASSMKTK 256
              C AA  L+H L +N   KE++LR++L     S+G     L+ +    L+  S ++T+
Sbjct: 436 SNWC-AAVALAHALQENATQKEQLLRVQLAT---SIGNPPVSLLQQCTNILSQGSKIQTR 491
Query: 257 DGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSA--TVCTRGLA 314
            G          +L LL TWL++CP AV  FL +  ++ +L   ++          +GL 
Sbjct: 492 VG----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLC 541
Query: 315 AVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSA--KP 368
           A+LLG  + +N +S        +   I +++G  ++  K   + K  L+S A  KP
Sbjct: 542 ALLLGISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRASQKP 597

>pdb|2W3C|A Chain A, Globular Head Region Of The Human General Vesicular Transport Factor P115 Length = 577

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 152/355 (42%), Gaps = 34/355 (9%)
Query: 19  FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
           ++ QK  NL   L+ + +L+   +         K   +  L+Q+  L  +LM    +   
Sbjct: 220 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 273
Query: 79  PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
           P  +    +  +S++I     N+D  AS      P   A +  ++ ++          A 
Sbjct: 274 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 333
Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLE 198
              F  F  KN  GQ  + STL+P     +        ++S G +L  GL    S   L 
Sbjct: 334 LYCFQCFLYKNQKGQGEIVSTLLPSTIDATGN------SVSAGQLLCGGLF---STDSLS 384
Query: 199 VCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAE-PLMHRMVRYLALASSMKTKD 257
             C AA  L+H L +N   KE++LR++L     S+G     L+ +    L+  S ++T+ 
Sbjct: 385 NWC-AAVALAHALQENATQKEQLLRVQLAT---SIGNPPVSLLQQCTNILSQGSKIQTRV 440
Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSA--TVCTRGLAA 315
           G          +L LL TWL++CP AV  FL +  ++ +L   ++          +GL A
Sbjct: 441 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 490
Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSA--KP 368
           +LLG  + +N +S        +   I +++G  ++  K   + K  L+S A  KP
Sbjct: 491 LLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRASQKP 545

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	657
3grl_A	651	General vesicular transport factor P115; vesicle t	4e-68
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score =  233 bits (596), Expect = 4e-68
 Identities = 93/451 (20%), Positives = 169/451 (37%), Gaps = 58/451 (12%)

Query: 2   GFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQ 61
               +    ++      ++ QK  NL   L+ + +L+   +           + +  + Q
Sbjct: 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATS-----SCQKAMFQ 309

Query: 62  KKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNS 121
              L  L  + + +   P  +    +  +S++I     N+D  AS      P   A +  
Sbjct: 310 CGLLQQLCTILM-ATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVL 368

Query: 122 ILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFG 181
           ++ ++          A    F  F  KN  GQ  + STL+P     +   +      S G
Sbjct: 369 LMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTV------SAG 422

Query: 182 SMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMH 241
            +L  GL       D      AA  L+H L +N   KE++LR++L   + +      L+ 
Sbjct: 423 QLLCGGLF----STDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGN--PPVSLLQ 476

Query: 242 RMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELV 301
           +    L+  S ++T+ G          +L LL TWL++CP AV  FL +  ++ +L   +
Sbjct: 477 QCTNILSQGSKIQTRVG----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQI 526

Query: 302 SNP--SATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQK 359
           +          +GL A+LLG  + +N +S        +   I +++G  ++  K   + K
Sbjct: 527 AENLGEEEQLVQGLCALLLGISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFISK 586

Query: 360 SFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDIIKS 419
             L+S A                 ++    +                 +FD  F  ++K 
Sbjct: 587 HELYSRA-----------------SQKPQPNFPSPEY----------MIFDHEFTKLVKE 619

Query: 420 LESSIRENIVDVYSRPKSEVAVVPAELEQRN 450
           LE  I + I       K E   V   LEQ +
Sbjct: 620 LEGVITKAIYKSSEEDKKEEE-VKKTLEQHD 649

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 81/628 (12%), Positives = 185/628 (29%), Gaps = 169/628 (26%)

Query: 87  LRC--ISDIIAAHPKNRDVLASKVLGE---EPQVEAALNSILRIILR--TSSMQEF---- 135
             C  + D+       + +L+ + +          +    +   +L      +Q+F    
Sbjct: 33  FDCKDVQDMP------KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 136 LAADR--IFNSFCEKNPDGQAMLTSTLI---------PQPQSMSHAPLEEDVNMSFGSML 184
           L  +   + +   +      +M+T   I          Q  +  +    +         L
Sbjct: 87  LRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----L 140

Query: 185 IRGLTLGESDGDLEVC--------CRAASVLS----HILMD------NL-QCKERVLRIE 225
            + L       ++ +           A  V         MD      NL  C      +E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 226 LEAPMPSLGAAEPLMHRMVR-YLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAV 284
           +          + L++++   + + +                   +KL +  +      +
Sbjct: 201 M---------LQKLLYQIDPNWTSRSDHSSN--------------IKLRIHSIQA---EL 234

Query: 285 HCFLDSRPHLTYLLEL--VSNPSATVCTRGLAAVLLGEC--VIYNKSSDTGRDAFSIVDS 340
              L S+P+   LL L  V N  A        A  L  C  ++      T R    + D 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKA------WNAFNLS-CKILL------TTRFK-QVTDF 280

Query: 341 ISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENE 400
           +S     T+  +  D    +       P +    L         +  D    DL  +   
Sbjct: 281 LS---AATTTHISLDHHSMTLT-----PDEVKSLL--------LKYLDCRPQDLPREVLT 324

Query: 401 DHPLLSSMF---DKHFVDIIKSLE-------SSIRENIVDVYSRPKSEVAVVPAELEQRN 450
            +P   S+     +  +    + +       ++I E+ ++V           PAE     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---------PAEY---- 371

Query: 451 GESDKDYVKRLKAFVEKQCSEI-QKLLGR--NATLAEELAKIGGDGASQSEQRASGALDR 507
               +    RL  F     + I   LL       +  ++  +     ++  +     +++
Sbjct: 372 ----RKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVV----VNKLHKY--SLVEK 419

Query: 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYR------NLAAKMESD--LKSLSDAY 559
            Q +     +        I  E K ++E++ +++R      N+    +SD  +    D Y
Sbjct: 420 -QPKESTISIP------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 560 NSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQ-KESEAELNDLLVCLGQEQ 618
                   HL+      +     +   D   ++ + R ++    +   + + L  L   +
Sbjct: 473 -FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 619 SKVEKLSARLLELGEDVEKLLEGIGDDM 646
             +     +   L   +   L  I +++
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENL 559

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 41/311 (13%), Positives = 95/311 (30%), Gaps = 83/311 (26%)

Query: 389 IDDSDLSDKENEDHPLLSSMFDKHFVDIIKS--LESSIRENIVDVYSRPKSEVAVVPAEL 446
           +D+ D  D ++    +LS    +    II S    S        + S+ +  V     E+
Sbjct: 30  VDNFDCKDVQDMPKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 447 EQRN--------GESDKDYVKRLKAFVE---KQCSEIQKLLGRNATLAEELAKI------ 489
            + N            +      + ++E   +  ++ Q     N +  +   K+      
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 490 ----------GGDGASQSEQRASGALD-RVQVE--------TLRKDLHEASQRLEILKEE 530
                     G  G+ ++       L  +VQ +         L+   +     LE+L+  
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQ-- 203

Query: 531 KAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL---KSGGSS----- 582
                        L  +++ +  S SD  ++++     ++ E++ L   K   +      
Sbjct: 204 ------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 583 -VSSPDV-EAIKAEAR-------------EEAQKESEAELNDLLVCLGQEQSKVEKLSAR 627
            V +     A     +               A   +   L+   + L  ++   + L  +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLK 309

Query: 628 LLELGEDVEKL 638
            L+     + L
Sbjct: 310 YLDC--RPQDL 318

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 33/190 (17%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 455  KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVET-- 512
             + ++R K   +K  +E+++L  ++  L EE   +     +++E  A     RV++    
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 513  --LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE 570
              L + LHE   R+E  +E   Q++++    +     +E  L+    A   L+      +
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 571  KEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLE 630
             ++K ++     +   + +  K     +  +E  ++L   L    ++   + KL  +   
Sbjct: 983  GKIKKME---DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 631  LGEDVEKLLE 640
            +  ++E  L+
Sbjct: 1040 MISELEVRLK 1049

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 8e-08
 Identities = 30/195 (15%), Positives = 78/195 (40%), Gaps = 10/195 (5%)

Query: 444  AELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASG 503
             +L+     +D   +K+++  +     +  KL      L E ++ +  +     E+  + 
Sbjct: 972  QKLQLEKVTADGK-IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN--LAEEEEKAK 1028

Query: 504  ALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLE 563
             L +++ +     + E   RL+  ++ + ++E         ++ +   +  L      L+
Sbjct: 1029 NLTKLKNK-HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 564  QTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEK 623
                  E+E++A        +  + E  +     +  +E E+ ++DL   L  E++   K
Sbjct: 1088 AQLAKKEEELQAAL------ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 624  LSARLLELGEDVEKL 638
               +  +L E++E L
Sbjct: 1142 AEKQKRDLSEELEAL 1156

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 35/211 (16%), Positives = 86/211 (40%), Gaps = 31/211 (14%)

Query: 445  ELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGA 504
            E E+R+ +     ++  K  +++Q  ++++ L           K+      Q E+  +  
Sbjct: 938  EEEERSQQ-----LQAEKKKMQQQMLDLEEQL---EEEEAARQKL------QLEKVTADG 983

Query: 505  LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQ 564
                +++ +  D+     +   L +E+  +E   S      A+ E   K+L+   N  E 
Sbjct: 984  ----KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 565  TNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKL 624
                LE  +K  +                +  E+ +++ E E +DL   + + Q+++ +L
Sbjct: 1040 MISELEVRLKKEEK-------------SRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 625  SARLLELGEDVEKLLEGIGDDMGLPEDDEEE 655
             A+L +  E+++  L  + D+     +  ++
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKK 1117

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 12/182 (6%)

Query: 459  KRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLH 518
            K      E +   IQK +            +      Q   R      R+  +   K L 
Sbjct: 857  KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR------RMMAKRELKKLK 910

Query: 519  EASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578
              ++ +E  K+    +E+     +    +   + KSL +  N+LE T      E + L+ 
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT---YSTETEKLR- 966

Query: 579  GGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKL 638
              S V    +   +A+         + E+  L   L Q Q++ + +     +   + E+L
Sbjct: 967  --SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 639  LE 640
            + 
Sbjct: 1025 VS 1026

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 30/186 (16%), Positives = 75/186 (40%), Gaps = 14/186 (7%)

Query: 444  AELEQRN---GESDKDYVKRLKAFVEKQCSEIQKLLG----RNATLAEELAKIGGDGASQ 496
            A+ E +         +  K+L   +E +  ++Q+ +        +L E++  +    +++
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 497  SEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS 556
            +E+  S   D  ++    ++   A+ R+  L+EE A++  +    +     +E       
Sbjct: 962  TEKLRS---DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018

Query: 557  DAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQ 616
               +  EQ    L+++   LK+    ++   +     E  E  +K+   E   L + L  
Sbjct: 1019 ---HETEQLVSELKEQNTLLKTEKEELNR-RIHDQAKEITETMEKKLVEETKQLELDLND 1074

Query: 617  EQSKVE 622
            E+ + +
Sbjct: 1075 ERLRYQ 1080

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	657
3grl_A	651	General vesicular transport factor P115; vesicle t	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	96.74
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	96.56
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.49
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.4
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.93
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.86
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.82
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.69
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.64
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.62
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.58
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.56
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	95.54
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	95.24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.22
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	94.98
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	94.97
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	94.73
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.73
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	94.72
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	94.72
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.61
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.46
3grl_A	651	General vesicular transport factor P115; vesicle t	94.37
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	94.15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.7
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	93.51
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	93.5
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.35
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.77
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.66
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.16
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	91.34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	91.32
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	90.89
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	89.77
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	89.67
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.99
3nmz_A	458	APC variant protein; protein-protein complex, arma	88.92
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.69
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	88.47
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	88.35
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	88.08
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.04
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	87.63
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.59
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	87.33
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	87.15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	86.16
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	85.85
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	85.34
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	85.18
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.93
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	84.59
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	83.53
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	83.45
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.19
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	82.67
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.73
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	81.34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	81.01

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=100.00  E-value=3e-86  Score=746.82  Aligned_cols=379  Identities=23%  Similarity=0.331  Sum_probs=330.9

Q ss_pred             CcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchH
Q 006200            2 GFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVA   81 (657)
Q Consensus         2 ~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~   81 (657)
                      ++.+|+++|+...+.+.|++||++|++++|+|||+||+|+++.     ++++.||++|+++|++++|++++| +..+|++
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~-----~~t~~nQ~~~~~~g~l~~Ll~ll~-~~~~p~~  328 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP-----GATSSCQKAMFQCGLLQQLCTILM-ATGVPAD  328 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH-----HHHHHHHHHHHHTTHHHHHHHHHT-CSSCCHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHCCCHHHHHHHHc-cCCCCHH
Confidence            4678899999888889999999999999999999999998762     234589999999999999999999 5689999


Q ss_pred             hHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCc-hhHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200           82 VRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSS-MQEFLAADRIFNSFCEKNPDGQAMLTSTL  160 (657)
Q Consensus        82 Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~-~~~r~AA~~cf~ayl~~N~~~q~~L~~tl  160 (657)
                      ||++||+|+|++||||+.||++|++++||+.| ++|+++.+|++|++... ...|+||+|||+|||++|+++|..+++|+
T Consensus       329 i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~-~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~l  407 (651)
T 3grl_A          329 ILTETINTVSEVIRGCQVNQDYFASVNAPSNP-PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTL  407 (651)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS-CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC-CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence            99999999999999999999999999999966 48999999999986655 47799999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchH
Q 006200          161 IPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM  240 (657)
Q Consensus       161 ~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll  240 (657)
                      +|.+.+.      .+.++|+|++||++||+    .|||++||||++|+|+|++|+++|++++||+++..  .+++|++++
T Consensus       408 lp~~~~~------~~~~~s~g~ll~~~l~s----~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~--~ge~~vtli  475 (651)
T 3grl_A          408 LPSTIDA------TGNTVSAGQLLCGGLFS----TDSLSNWCAAVALAHALQENATQKEQLLRVQLATS--IGNPPVSLL  475 (651)
T ss_dssp             SSCCCCC------TTSSSCHHHHHHHHHTS----SCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCC--TTCCCCBHH
T ss_pred             CCccccc------CCCCCCcchhhhhhhcc----CchHHHHHHHHHHHHHHcCCHHHHHHHHhCccccc--CCCCcccHH
Confidence            9987542      23458999999999987    47899999999999999999999999999997743  467889999


Q ss_pred             HHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCC-C-CchHhHHHHHHHh
Q 006200          241 HRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNP-S-ATVCTRGLAAVLL  318 (657)
Q Consensus       241 ~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~-~-~~~lVqGL~A~LL  318 (657)
                      |+|+++|.     ++.|     .++++|||||||+||||||+||+|||++++|+++|+++++++ + .+++|||||||||
T Consensus       476 q~~~~~L~-----~~~~-----~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LL  545 (651)
T 3grl_A          476 QQCTNILS-----QGSK-----IQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLL  545 (651)
T ss_dssp             HHHHHHTT-----TTCC-----HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cCCc-----hhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence            99988764     2233     357789999999999999999999999999999999999764 3 5899999999999


Q ss_pred             hhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhcccccccCCCccccccchhhhhhhhhhhhcccccccCCCC
Q 006200          319 GECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKE  398 (657)
Q Consensus       319 G~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~~f~~~~~~~~~~~l~r~~~~~~~~~~~~~~~d~~~~~  398 (657)
                      ||||+||..+.++.+|++||++|++|||+|+|++||++||+||+|+++.  +.+++.                       
T Consensus       546 Gi~yef~~~~~~~~~R~~l~~ll~~riG~d~y~~kl~~lr~~~~f~~~~--~~~~~~-----------------------  600 (651)
T 3grl_A          546 GISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRAS--QKPQPN-----------------------  600 (651)
T ss_dssp             HHHHHTCCSCCGGGCHHHHHHHHHHHTCHHHHHHHHHHHHHSTTHHHHH--HCSCCC-----------------------
T ss_pred             HHHhhccCCCcCccCHHHHHHHHHHhcCHHHHHHHHHHHhcCHHHHHHH--hCcCcc-----------------------
Confidence            9999999876556899999999999999999999999999999999874  232221                       


Q ss_pred             cCCCCcccccccHHHHHHHHHhHHHHHHhhhhhcCCCCCcc
Q 006200          399 NEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEV  439 (657)
Q Consensus       399 ~~~~~l~~v~FD~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~  439 (657)
                        ..+.|+||||++||+|||+||+||+|||   +++|+.+.
T Consensus       601 --~~~~~~v~fd~~F~~~fK~~~~ri~~al---~~~~~~~~  636 (651)
T 3grl_A          601 --FPSPEYMIFDHEFTKLVKELEGVITKAI---YKSSEEDK  636 (651)
T ss_dssp             --CSSGGGTTCCHHHHHHHHHHHHHHHHHH---HCCC----
T ss_pred             --CCCCCceeecHHHHHHHHHHHHHHHHHh---cCCcccch
Confidence              0123699999999999999999999999   68888764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.23  E-value=0.052  Score=52.28  Aligned_cols=209  Identities=16%  Similarity=0.142  Sum_probs=144.5

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+...+.+.|++..|+.+.- +.  ...||..|+.+++.+..+++.++..+.+..+      .|.+    ..++...+..
T Consensus        35 ~~~~~~~~~g~i~~L~~ll~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~l----~~ll~~~~~~  101 (252)
T 4hxt_A           35 SAIKAIVDAGGVEVLVKLLT-ST--DSEVQKEAARALANIASGPDEAIKAIVDAGG------VEVL----VKLLTSTDSE  101 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH------HHHH----HHHTTCSSHH
T ss_pred             HHHHHHHHCCCHHHHHHHHh-CC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCC------HHHH----HHHHcCCCHH
Confidence            58889999999999999887 33  5899999999999999999999888865422      2333    3334566778


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD  213 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d  213 (657)
                      .+.+|+.++..+...+++.+..+...                   .....|+..|.+    .++.....|+.+|.++...
T Consensus       102 v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A          102 VQKEAARALANIASGPDEAIKAIVDA-------------------GGVEVLVKLLTS----TDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHT-------------------THHHHHHHHTTC----SCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHC-------------------CCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcC
Confidence            88999999999998998888655431                   122335554432    2355566688899999998


Q ss_pred             CHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCCh
Q 006200          214 NLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPH  293 (657)
Q Consensus       214 n~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~  293 (657)
                      ++..+..+..   .          ..++.+..++.      +.+     ..+|..-+..|..-..+++.....+...+ .
T Consensus       159 ~~~~~~~~~~---~----------~~i~~L~~ll~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~  213 (252)
T 4hxt_A          159 PDEAIKAIVD---A----------GGVEVLVKLLT------STD-----SEVQKEAARALANIASGPTSAIKAIVDAG-G  213 (252)
T ss_dssp             CHHHHHHHHH---T----------THHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSBHHHHHHHHHTT-H
T ss_pred             CHHHHHHHHH---C----------cCHHHHHHHHC------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHCC-C
Confidence            8887664432   1          14555555543      111     23444456666666677888877777766 7


Q ss_pred             HHHHHHHhhCCCCchHhHHHHHHHhhhhHhhc
Q 006200          294 LTYLLELVSNPSATVCTRGLAAVLLGECVIYN  325 (657)
Q Consensus       294 l~~L~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn  325 (657)
                      ++.|++.+.+.  +.-|+--++..|+-...+.
T Consensus       214 i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          214 VEVLQKLLTST--DSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHGGGCS--CHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCC--cHHHHHHHHHHHHHHHcCC
Confidence            89999888643  4577888888887444433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.23  E-value=0.026  Score=58.63  Aligned_cols=221  Identities=15%  Similarity=0.118  Sum_probs=140.5

Q ss_pred             HHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHH-HHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhh
Q 006200           27 LLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLM-LAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLA  105 (657)
Q Consensus        27 ~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~-La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa  105 (657)
                      -..+|+++.-|+..            ..|...|.+.|.+..|+. +.- ++  ...||..|..++|.+..+|+.+|..+.
T Consensus        57 k~~Al~~L~~lv~~------------~dna~~~~~~G~l~~Lv~~lL~-s~--~~~vr~~Aa~~Lg~ia~~n~~~~~~vv  121 (296)
T 1xqr_A           57 REGALELLADLCEN------------MDNAADFCQLSGMHLLVGRYLE-AG--AAGLRWRAAQLIGTCSQNVAAIQEQVL  121 (296)
T ss_dssp             HHHHHHHHHHHHTS------------HHHHHHHHHTTHHHHHHHTTTT-CS--SHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC------------hhhHHHHHHcCCHHHHHHHHHc-CC--CHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            34455666666642            147888999999999988 654 43  679999999999999999999999877


Q ss_pred             ccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhH-HHHHhhhcCCCCCCCCCCCcccccCChhHHH
Q 006200          106 SKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQ-AMLTSTLIPQPQSMSHAPLEEDVNMSFGSML  184 (657)
Q Consensus       106 ~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q-~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~L  184 (657)
                      ...+      .|.+..||..   ..+...+..|++++-+.+.+|+..+ .++....                    ...|
T Consensus       122 ~~g~------l~~Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg--------------------i~~L  172 (296)
T 1xqr_A          122 GLGA------LRKLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDG--------------------FSVL  172 (296)
T ss_dssp             HTTH------HHHHHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH--------------------HHHH
T ss_pred             HCCC------HHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC--------------------HHHH
Confidence            5432      3444455432   3356778899999999999998877 4444222                    2334


Q ss_pred             hhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchh
Q 006200          185 IRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGY  264 (657)
Q Consensus       185 l~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~  264 (657)
                      ...|-+.    |+...--|+.+|.++...+++.+..+..-             -++..++.+|.      +.|.     .
T Consensus       173 ~~lL~~~----d~~v~~~A~~aLs~L~~~~~~~~~~vv~~-------------g~i~~Lv~LL~------~~d~-----~  224 (296)
T 1xqr_A          173 MRAMQQQ----VQKLKVKSAFLLQNLLVGHPEHKGTLCSM-------------GMVQQLVALVR------TEHS-----P  224 (296)
T ss_dssp             HHHHHSS----CHHHHHHHHHHHHHHHHHCGGGHHHHHHT-------------THHHHHHHHHT------SCCS-----T
T ss_pred             HHHHcCC----CHHHHHHHHHHHHHHHhCChHHHHHHHHc-------------CCHHHHHHHHc------CCCh-----h
Confidence            4444332    33333448889999998888777655321             15556655553      1122     2


Q ss_pred             HHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHh-h--C-CCCchHhHHHHHHHhh
Q 006200          265 IQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELV-S--N-PSATVCTRGLAAVLLG  319 (657)
Q Consensus       265 ~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i-~--~-~~~~~lVqGL~A~LLG  319 (657)
                      ++---+..|..-+.+++.++..|=.....+..+++.. .  + .++..-+.-.|.-++=
T Consensus       225 v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~  283 (296)
T 1xqr_A          225 FHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ  283 (296)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            3334566666666778888887755433455555443 2  2 2333455556666665

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=96.74  E-value=0.19  Score=48.73  Aligned_cols=202  Identities=16%  Similarity=0.102  Sum_probs=134.2

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+...+.+.|++..|+.+.- +.  ...|+..|+.+++.+..+++.++..+....+      .|.+.    .+|...+..
T Consensus        45 ~~~~~~~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~----~lL~~~~~~  111 (252)
T 4db8_A           45 EQIQAVIDAGALPALVQLLS-SP--NEQILQEALWALSNIASGGNEQIQAVIDAGA------LPALV----QLLSSPNEQ  111 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGG-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH------HHHHH----HGGGCSCHH
T ss_pred             chHHHHHHcCcHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC------HHHHH----HHHcCCCHH
Confidence            56778999999999999887 33  4899999999999999999999888765421      23333    334556678


Q ss_pred             HHhHHHHHHHHhhcCChhhH-HHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200          134 EFLAADRIFNSFCEKNPDGQ-AMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM  212 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q-~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~  212 (657)
                      .+..|+.++..+..+++..+ .++....                    ...|+.-|.+    .++.....|+.+|.++..
T Consensus       112 v~~~a~~~L~~l~~~~~~~~~~~~~~~~--------------------i~~L~~lL~~----~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A          112 ILQEALWALSNIASGGNEQIQAVIDAGA--------------------LPALVQLLSS----PNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTH--------------------HHHHHHGGGC----SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHHHCCC--------------------HHHHHHHHhC----CCHHHHHHHHHHHHHHHc
Confidence            88899999998888776653 3333222                    2335554422    144555668889999999


Q ss_pred             CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200          213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP  292 (657)
Q Consensus       213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s  292 (657)
                      .++..+..+..-             .++..+..++.      ..+     ..++..-+..|..-..+++.....++..+ 
T Consensus       168 ~~~~~~~~~~~~-------------~~i~~L~~ll~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-  222 (252)
T 4db8_A          168 GGNEQIQAVIDA-------------GALPALVQLLS------SPN-----EQILQEALWALSNIASGGNEQKQAVKEAG-  222 (252)
T ss_dssp             SCHHHHHHHHHT-------------TCHHHHHHGGG------CSS-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-
T ss_pred             CChHHHHHHHHC-------------CCHHHHHHHHC------CCC-----HHHHHHHHHHHHHHhcCCHHHHHHHHHCC-
Confidence            888777654321             14455554442      111     23344445555555567888888887766 


Q ss_pred             hHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200          293 HLTYLLELVSNPSATVCTRGLAAVLLG  319 (657)
Q Consensus       293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG  319 (657)
                      .++.|+..+.+  .+.-|+--++..|+
T Consensus       223 ~i~~L~~ll~~--~~~~v~~~A~~~L~  247 (252)
T 4db8_A          223 ALEKLEQLQSH--ENEKIQKEAQEALE  247 (252)
T ss_dssp             HHHHHHTTTTC--SSSHHHHTHHHHHH
T ss_pred             cHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence            68888877754  35567777777776

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=96.56  E-value=0.039  Score=57.26  Aligned_cols=132  Identities=14%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+|..+.++|.+..|+.+.-.+  .+..||..|+.+++.++||++..+..|...     + ..|.+..+    |...+..
T Consensus       115 ~~~~~vv~~g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-----g-gi~~L~~l----L~~~d~~  182 (296)
T 1xqr_A          115 AIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRL-----D-GFSVLMRA----MQQQVQK  182 (296)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----T-HHHHHHHH----HHSSCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-----C-CHHHHHHH----HcCCCHH
Confidence            6899999999999999987732  368899999999999999999999888763     1 13444444    3456777


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHH-hhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLT-STLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM  212 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~-~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~  212 (657)
                      .+..|+.++..++.++++.+..++ ...                    ...|+.-|-+.+    +...--|+..|..++.
T Consensus       183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~--------------------i~~Lv~LL~~~d----~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          183 LKVKSAFLLQNLLVGHPEHKGTLCSMGM--------------------VQQLVALVRTEH----SPFHEHVLGALCSLVT  238 (296)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHTTH--------------------HHHHHHHHTSCC----STHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHcCC--------------------HHHHHHHHcCCC----hhHHHHHHHHHHHHHh
Confidence            788889999988888887775444 222                    222444342322    2334447778889998


Q ss_pred             CCHHHHHHH
Q 006200          213 DNLQCKERV  221 (657)
Q Consensus       213 dn~~~Ke~a  221 (657)
                      ++++.+...
T Consensus       239 ~~~~~~~~~  247 (296)
T 1xqr_A          239 DFPQGVREC  247 (296)
T ss_dssp             TCHHHHHHH
T ss_pred             CChhHHHHH
Confidence            877765543

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.49  E-value=0.42  Score=46.47  Aligned_cols=24  Identities=8%  Similarity=0.069  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          461 LKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       461 lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      +...+..-..++..++.++..+..
T Consensus        18 ~~~~~~~l~~~l~~l~~~~~~~~~   41 (284)
T 1c1g_A           18 ALDRADEAEADKKAAEDRSKQLED   41 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444443333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.40  E-value=0.55  Score=45.62  Aligned_cols=37  Identities=14%  Similarity=0.215  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME  549 (657)
Q Consensus       513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le  549 (657)
                      +..++......+..+..++..++.++..+......++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (284)
T 1c1g_A           81 AEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE  117 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.04  E-value=1.2  Score=43.28  Aligned_cols=31  Identities=16%  Similarity=0.024  Sum_probs=22.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAE  484 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~  484 (657)
                      ..+-+.-||+...+-.+++.+++..+....+
T Consensus         8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe   38 (189)
T 2v71_A            8 LKEETAYWKELSMKYKQSFQEARDELVEFQE   38 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888888777777666655

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.93  E-value=0.32  Score=45.87  Aligned_cols=132  Identities=17%  Similarity=0.120  Sum_probs=96.2

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .++..+.+.|++..|+.+.- +.  ...||..|+.+++.+..+++.+...+....+      .|.+..    +|...+..
T Consensus        45 ~~~~~i~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~~----lL~~~~~~  111 (210)
T 4db6_A           45 EQIQAVIDAGALPALVQLLS-SP--NEQILQEALWALSNIASGGNEQIQAVIDAGA------LPALVQ----LLSSPNEQ  111 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC------HHHHHH----HTTCSCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC------HHHHHH----HHcCCcHH
Confidence            67889999999999999876 33  6799999999999999999988887765422      333333    34566778


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD  213 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d  213 (657)
                      .+..|++++..+..++++.+..+...                   .....|+.-|-+    .++.....|+.+|.++...
T Consensus       112 v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A          112 ILQEALWALSNIASGGNEQIQAVIDA-------------------GALPALVQLLSS----PNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHT-------------------THHHHHHHHTTC----SCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHc-------------------CcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcC
Confidence            88999999999998888776544321                   122335554432    2455566688899999998


Q ss_pred             CHHHHHHH
Q 006200          214 NLQCKERV  221 (657)
Q Consensus       214 n~~~Ke~a  221 (657)
                      ++..+..+
T Consensus       169 ~~~~~~~~  176 (210)
T 4db6_A          169 GNEQKQAV  176 (210)
T ss_dssp             CHHHHHHH
T ss_pred             CcHHHHHH
Confidence            88887644

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.86  E-value=0.5  Score=47.84  Aligned_cols=45  Identities=13%  Similarity=0.078  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200          509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK  553 (657)
Q Consensus       509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~  553 (657)
                      ++..++.++..++..++.++.++.+++.+++..+..+.+.+..+.
T Consensus        40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~   84 (256)
T 3na7_A           40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS   84 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555555555555555554333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.82  E-value=0.22  Score=60.43  Aligned_cols=11  Identities=18%  Similarity=0.434  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHh
Q 006200           85 AALRCISDIIA   95 (657)
Q Consensus        85 ~AL~t~adlIr   95 (657)
                      +++..+|.++-
T Consensus       355 ~~l~~~a~LLg  365 (1080)
T 2dfs_A          355 DPLTIFCDLMG  365 (1080)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            45555555553

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.69  E-value=1.2  Score=42.52  Aligned_cols=194  Identities=16%  Similarity=0.180  Sum_probs=129.2

Q ss_pred             cHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHH
Q 006200           63 KALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIF  142 (657)
Q Consensus        63 glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf  142 (657)
                      |.+..|+.+.- +.  ...+|..|+.+++.+..+++.+...|....         ++..|+ .+|...+...+..|+.++
T Consensus         2 ~~i~~L~~~L~-~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---------~i~~L~-~ll~~~~~~v~~~a~~~L   68 (252)
T 4hxt_A            2 NDVEKLVKLLT-ST--DSETQKEAARDLAEIASGPASAIKAIVDAG---------GVEVLV-KLLTSTDSEVQKEAARAL   68 (252)
T ss_dssp             CHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---------HHHHHH-HHTTCSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC---------CHHHHH-HHHhCCCHHHHHHHHHHH
Confidence            34556666665 33  488999999999999999987877776532         222333 334556678889999999


Q ss_pred             HHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHh
Q 006200          143 NSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVL  222 (657)
Q Consensus       143 ~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al  222 (657)
                      .....++++.+..+...                   .....|+.-|-+    .++.....|+.+|.++...++..+..+.
T Consensus        69 ~~l~~~~~~~~~~~~~~-------------------~~i~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~  125 (252)
T 4hxt_A           69 ANIASGPDEAIKAIVDA-------------------GGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIV  125 (252)
T ss_dssp             HHHTTSCHHHHHHHHHT-------------------THHHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHC-------------------CCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999988888655431                   112334554422    2455566688899999988888887655


Q ss_pred             ccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhh
Q 006200          223 RIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVS  302 (657)
Q Consensus       223 ~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~  302 (657)
                      .-             ..+..+..++.      ..+     ..++..-+..|.....+++.....+...+ .++.|+..+.
T Consensus       126 ~~-------------~~i~~L~~~l~------~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~  180 (252)
T 4hxt_A          126 DA-------------GGVEVLVKLLT------STD-----SEVQKEAARALANIASGPDEAIKAIVDAG-GVEVLVKLLT  180 (252)
T ss_dssp             HT-------------THHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHHTT
T ss_pred             HC-------------CCHHHHHHHHc------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHCc-CHHHHHHHHC
Confidence            41             14455544442      111     23455566677777777777777777755 7999999986


Q ss_pred             CCCCchHhHHHHHHHhh
Q 006200          303 NPSATVCTRGLAAVLLG  319 (657)
Q Consensus       303 ~~~~~~lVqGL~A~LLG  319 (657)
                      +  .+..|+.-++..|+
T Consensus       181 ~--~~~~v~~~a~~~L~  195 (252)
T 4hxt_A          181 S--TDSEVQKEAARALA  195 (252)
T ss_dssp             C--SCHHHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHH
Confidence            4  34667777777776

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.64  E-value=0.044  Score=67.14  Aligned_cols=43  Identities=21%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             HHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhhhcc
Q 006200          599 AQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEG  641 (657)
Q Consensus       599 ~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~~~~  641 (657)
                      .++.++.+++++-.-+...+.++..+.+.+.++-..+.+.+..
T Consensus      1005 e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~ 1047 (1184)
T 1i84_S         1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047 (1184)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666666655555555555555443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.62  E-value=0.54  Score=45.75  Aligned_cols=144  Identities=17%  Similarity=0.152  Sum_probs=68.1

Q ss_pred             HHHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006200          413 FVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGD  492 (657)
Q Consensus       413 Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~  492 (657)
                      =+.+||..+...+..+..+      +  .-.+..+.    .|+++=.-|-..|..-.+.+.+|+.++..|..++..... 
T Consensus        11 e~~ywk~~~~~~~q~~~~l------e--~El~EFqe----sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~-   77 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEA------R--DELVEFQE----GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE-   77 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------H--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHH------H--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4678888777776665311      0  00122222    356666666666666666666666666666665432220 


Q ss_pred             CCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHH
Q 006200          493 GASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKE  572 (657)
Q Consensus       493 ~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e  572 (657)
                      +     ..........++..|+.++..++..++.+...++.+|-...++....-...+.+..+..+||..-.++.=|+.|
T Consensus        78 K-----~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~E  152 (189)
T 2v71_A           78 K-----LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESE  152 (189)
T ss_dssp             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            0     00000011223444444444444444444444444444444444444444444444445555544444444444


Q ss_pred             HH
Q 006200          573 VK  574 (657)
Q Consensus       573 ~~  574 (657)
                      +.
T Consensus       153 l~  154 (189)
T 2v71_A          153 LD  154 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.58  E-value=0.026  Score=69.18  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          459 KRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      ..++..+......+++++.++..|.++.
T Consensus       867 ~el~~~L~~le~~l~ele~~l~~Le~e~  894 (1184)
T 1i84_S          867 QRTKERQQKAEAELKELEQKHTQLCEEK  894 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.56  E-value=1.9  Score=43.51  Aligned_cols=45  Identities=11%  Similarity=0.264  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200          532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL  576 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l  576 (657)
                      ..+..|++.++...+.++..+..+..++..++.....+++++..+
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~  137 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL  137 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444433333

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=95.54  E-value=0.55  Score=51.74  Aligned_cols=253  Identities=14%  Similarity=0.104  Sum_probs=143.5

Q ss_pred             hHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCC----Cc----cchhhhHHHHHhhcHHHHHHHHHhccCCC
Q 006200            7 ISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPG----KD----AHKLTNKTVLVQKKALDNLLMLAVESQWA   78 (657)
Q Consensus         7 ~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~----~~----~~~~~nQ~~l~q~glL~~ll~La~~s~~~   78 (657)
                      ..+-|+-+.+..++-+.+.+..++=-+|++|-...++...-    .-    .+...+..++.+.|.+..|+.+.- |+  
T Consensus        98 ~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~-s~--  174 (529)
T 3tpo_A           98 QAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SP--  174 (529)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CS--
T ss_pred             HHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CC--
Confidence            33444444455555566666655556666664332211000    00    011245678999999999999766 43  


Q ss_pred             chHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHh-ccCchhHHhHHHHHHHHhhcCChhhH-HHH
Q 006200           79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIIL-RTSSMQEFLAADRIFNSFCEKNPDGQ-AML  156 (657)
Q Consensus        79 p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L-~~~~~~~r~AA~~cf~ayl~~N~~~q-~~L  156 (657)
                      ...|+..|+.+++.+...++.+++.+..--+      .|.+..+|..-- ..........+++++-.++.+..... ...
T Consensus       175 ~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~------i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~  248 (529)
T 3tpo_A          175 HAHISEQAVWALGNIAGAGSAFRDLVIKHGA------IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA  248 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCHHHHHHHHHcCC------cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence            7899999999999999999999988765433      233333322100 00111222345556655554432211 111


Q ss_pred             HhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCC
Q 006200          157 TSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAA  236 (657)
Q Consensus       157 ~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~  236 (657)
                      +..+                    ...|..-|.+    .++.....|+..|.++...+...+..+..   .         
T Consensus       249 ~~~~--------------------lp~L~~LL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~v~~---~---------  292 (529)
T 3tpo_A          249 VEQI--------------------LPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVK---K---------  292 (529)
T ss_dssp             HHHH--------------------HHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHT---T---------
T ss_pred             HhhH--------------------HHHHHHHhcC----CcHHHHHHHHHHHHHhhhhhhhhHHHHHh---c---------
Confidence            1111                    1223333322    23444555888999999888877664422   1         


Q ss_pred             cchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHH
Q 006200          237 EPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAV  316 (657)
Q Consensus       237 e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~  316 (657)
                       .++..++.++.      +.+     ..++..-++.|.-...+++.....++..+ .++.|+..+.++  +.-|+--++.
T Consensus       293 -g~i~~Lv~lL~------~~~-----~~v~~~a~~aL~nl~~~~~~~~~~i~~~g-~l~~L~~LL~~~--~~~i~~~a~~  357 (529)
T 3tpo_A          293 -GVVPQLVKLLG------ATE-----LPIVTPALRAIGNIVTGTDEQTQKVIDAG-ALAVFPSLLTNP--KTNIQKEATW  357 (529)
T ss_dssp             -TCHHHHHHHHT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-GGGGHHHHTTCS--SHHHHHHHHH
T ss_pred             -cchHHHHHHhc------CCC-----hhHHHHHHHHHHHHHccchHHHHHHhhcc-cHHHHHHHHcCC--CHHHHHHHHH
Confidence             14555555543      111     12444456777777788888777777776 588888888644  4557777777


Q ss_pred             Hhh
Q 006200          317 LLG  319 (657)
Q Consensus       317 LLG  319 (657)
                      .|+
T Consensus       358 aL~  360 (529)
T 3tpo_A          358 TMS  360 (529)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=95.24  E-value=4.5  Score=44.25  Aligned_cols=231  Identities=14%  Similarity=0.103  Sum_probs=135.0

Q ss_pred             HhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHH
Q 006200           60 VQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAAD  139 (657)
Q Consensus        60 ~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~  139 (657)
                      .-.|++..|.++.- +  -...|+..|..+++.+..++......+..-.      ..|.++.+    |...+...+..|+
T Consensus       229 ~~~~~lp~L~~LL~-~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g------~i~~Lv~l----L~~~~~~v~~~al  295 (510)
T 3ul1_B          229 AVEQILPTLVRLLH-H--NDPEVLADSCWAISYLTDGPNERIEMVVKKG------VVPQLVKL----LGATELPIVTPAL  295 (510)
T ss_dssp             HHHHHHHHHHHHTT-C--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT------CHHHHHHH----HTCSCHHHHHHHH
T ss_pred             HHHhHHHHHHHHHh-c--CCHHHHHHHHHHHHHHhhchhhhHHHHHhcc------cchhhhhh----hcCCChhhhhHHH
Confidence            33577888888766 3  3778999999999999998876665543321      13444433    4566677888999


Q ss_pred             HHHHHhhcCChhhHHHHHh-hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHH
Q 006200          140 RIFNSFCEKNPDGQAMLTS-TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCK  218 (657)
Q Consensus       140 ~cf~ayl~~N~~~q~~L~~-tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~K  218 (657)
                      .++...+.+++..+..+.. ..+|                    .|.. |+.   ..++.....|+.+|.++...++..+
T Consensus       296 ~aL~nl~~~~~~~~~~i~~~g~l~--------------------~L~~-LL~---~~~~~v~~~A~~aL~nl~a~~~~~~  351 (510)
T 3ul1_B          296 RAIGNIVTGTDEQTQKVIDAGALA--------------------VFPS-LLT---NPKTNIQKEATWTMSNITAGRQDQI  351 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGG--------------------GCC--CTT---CSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHhhcCCHHHHHHHhhccchH--------------------HHHH-Hhc---CCCHHHHHHHHHHHHHHHcCcHHHH
Confidence            9999999999877754442 2211                    1222 222   1233445568889999999998887


Q ss_pred             HHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHh-hcChHHHHHhhcCCChHHHH
Q 006200          219 ERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWL-ADCPNAVHCFLDSRPHLTYL  297 (657)
Q Consensus       219 e~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL-~e~p~AV~~FL~~~s~l~~L  297 (657)
                      ..+..-             -++..+..++.-.      +     ..+|.--...|+-.. .+++.-+..+...+ .++.|
T Consensus       352 ~~v~~~-------------g~i~~Lv~lL~~~------~-----~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g-~i~~L  406 (510)
T 3ul1_B          352 QQVVNH-------------GLVPFLVGVLSKA------D-----FKTQKEAAWAITNYTSGGTVEQIVYLVHCG-IIEPL  406 (510)
T ss_dssp             HHHHHT-------------THHHHHHHHHHSS------C-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHTT-CHHHH
T ss_pred             HHHHhc-------------CCHHHHHHHHcCC------C-----HHHHHHHHHHHHHHHccCCHHHHHHHHHCC-CHHHH
Confidence            755321             1566666665411      1     112222222233222 35666666666666 69999


Q ss_pred             HHHhhCCCCchHhHHHHHHHhhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhccc
Q 006200          298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSF  361 (657)
Q Consensus       298 ~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~  361 (657)
                      ++.+...+..++..+|.++- -||-..+..    .....+..+|..- |   .+++|..|..|+
T Consensus       407 ~~LL~~~d~~i~~~~L~aL~-nil~~~~~~----~~~~~~~~~iee~-g---gl~~ie~Lq~~~  461 (510)
T 3ul1_B          407 MNLLSAKDTKIIQVILDAIS-NIFQAAEKL----GETEKLSIMIEEC-G---GLDKIEALQRHE  461 (510)
T ss_dssp             HHGGGCSCHHHHHHHHHHHH-HHHHHHHTT----TCHHHHHHHHHHT-T---HHHHHHHGGGCS
T ss_pred             HHHhcCCCHHHHHHHHHHHH-HHHHHhHhc----cchHHHHHHHHHc-C---cHHHHHHHHcCC
Confidence            99987665544444444331 122222321    1233444444433 2   456888888775

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.22  E-value=1.7  Score=40.64  Aligned_cols=194  Identities=15%  Similarity=0.077  Sum_probs=124.5

Q ss_pred             cHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHH
Q 006200           63 KALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIF  142 (657)
Q Consensus        63 glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf  142 (657)
                      |.-..|..|.- +.  ...+|..|+.+++.+..+++.++..+....+      .|.+..    +|...+...+.+|+.++
T Consensus        12 ~~~~~l~~LL~-s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~~----lL~~~~~~v~~~a~~~L   78 (210)
T 4db6_A           12 SELPQMVQQLN-SP--DQQELQSALRKLSQIASGGNEQIQAVIDAGA------LPALVQ----LLSSPNEQILQEALWAL   78 (210)
T ss_dssp             -CHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH------HHHHHH----HTTCSCHHHHHHHHHHH
T ss_pred             chhHHHHHHhc-CC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC------HHHHHH----HHcCCCHHHHHHHHHHH
Confidence            34445666655 43  7899999999999999999988877765422      333333    34556778889999999


Q ss_pred             HHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHh
Q 006200          143 NSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVL  222 (657)
Q Consensus       143 ~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al  222 (657)
                      .....++++.+..+...        +           ....|+.-|-+.    |+.....|+.+|.++..+++..+..+.
T Consensus        79 ~~l~~~~~~~~~~i~~~--------g-----------~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~  135 (210)
T 4db6_A           79 SNIASGGNEQIQAVIDA--------G-----------ALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVI  135 (210)
T ss_dssp             HHHTTSCHHHHHHHHHT--------T-----------CHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHhcCCcHHHHHHHHC--------C-----------CHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999998887555431        0           123345544222    455566688899999988888766543


Q ss_pred             ccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhh
Q 006200          223 RIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVS  302 (657)
Q Consensus       223 ~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~  302 (657)
                      .   .          .++..+..++.      +.+     ..++..-+..|..-...++.....+...+ .++.|+..+.
T Consensus       136 ~---~----------~~i~~L~~ll~------~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~~~~g-~i~~L~~ll~  190 (210)
T 4db6_A          136 D---A----------GALPALVQLLS------SPN-----EQILQEALWALSNIASGGNEQKQAVKEAG-ALEKLEQLQS  190 (210)
T ss_dssp             H---T----------THHHHHHHHTT------CSC-----HHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHGGG
T ss_pred             H---c----------CcHHHHHHHHc------CCC-----HHHHHHHHHHHHHHHcCCcHHHHHHHHCC-CHHHHHHHHh
Confidence            1   1          14555555543      111     12333344555555566677777777776 6899998886


Q ss_pred             CCCCchHhHHHHHHHhh
Q 006200          303 NPSATVCTRGLAAVLLG  319 (657)
Q Consensus       303 ~~~~~~lVqGL~A~LLG  319 (657)
                      +  .+.-|+--++..|+
T Consensus       191 ~--~~~~v~~~a~~aL~  205 (210)
T 4db6_A          191 H--ENEKIQKEAQEALE  205 (210)
T ss_dssp             C--SCHHHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHH
Confidence            4  35566766666665

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=94.98  E-value=2.6  Score=45.69  Aligned_cols=204  Identities=14%  Similarity=0.110  Sum_probs=125.8

Q ss_pred             hHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhH
Q 006200           55 NKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQE  134 (657)
Q Consensus        55 nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~  134 (657)
                      +...+.+.|++..|+.+.-. . -...||..|+.+++.+..+++.+...+....+      .|.+..    +|...+...
T Consensus       109 ~~~~~~~~g~v~~Lv~lL~~-~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~------i~~L~~----lL~~~~~~v  176 (528)
T 4b8j_A          109 PIEEVIQSGVVPRFVQFLTR-E-DFPQLQFEAAWALTNIASGTSENTKVVIDHGA------VPIFVK----LLGSSSDDV  176 (528)
T ss_dssp             CHHHHHHTTCHHHHHHHHTC-T-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH------HHHHHH----HTTCSCHHH
T ss_pred             hHHHHHHCCCHHHHHHHhCC-C-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc------HHHHHH----HhcCCCHHH
Confidence            45567889999999998763 2 23789999999999999999888776654311      233333    344567788


Q ss_pred             HhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCC
Q 006200          135 FLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDN  214 (657)
Q Consensus       135 r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn  214 (657)
                      +..|++++.....+++..+..+...                   .....|+..|.. +  .++.....|+.+|.++....
T Consensus       177 ~~~a~~aL~~l~~~~~~~~~~i~~~-------------------g~l~~Ll~lL~~-~--~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          177 REQAVWALGNVAGDSPKCRDLVLAN-------------------GALLPLLAQLNE-H--TKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHT-------------------TCHHHHHHTCCT-T--CCHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhCCChhhHHHHHHC-------------------CcHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHcCC
Confidence            8899999999998888887655431                   012335554422 1  24455556777888887664


Q ss_pred             HHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChH
Q 006200          215 LQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHL  294 (657)
Q Consensus       215 ~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l  294 (657)
                      +..+....              ..+++.+..++.      ..|     ..++...+..|..-..+.+..+..++..+ .+
T Consensus       235 ~~~~~~~~--------------~~~l~~L~~lL~------~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~~~~g-~v  288 (528)
T 4b8j_A          235 PQPSFEQT--------------RPALPALARLIH------SND-----EEVLTDACWALSYLSDGTNDKIQAVIEAG-VC  288 (528)
T ss_dssp             SCCCHHHH--------------TTHHHHHHHHTT------CCC-----HHHHHHHHHHHHHHTSSCHHHHHHHHHTT-CH
T ss_pred             CCCcHHHH--------------HHHHHHHHHHHC------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHcC-HH
Confidence            32221110              124444444431      112     12333344455544455666666777665 69


Q ss_pred             HHHHHHhhCCCCchHhHHHHHHHhhh
Q 006200          295 TYLLELVSNPSATVCTRGLAAVLLGE  320 (657)
Q Consensus       295 ~~L~~~i~~~~~~~lVqGL~A~LLG~  320 (657)
                      +.|+..+.+.+  .-|+--++..||-
T Consensus       289 ~~Lv~lL~~~~--~~v~~~a~~~L~n  312 (528)
T 4b8j_A          289 PRLVELLLHPS--PSVLIPALRTVGN  312 (528)
T ss_dssp             HHHHHHTTCSC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC--hhHHHHHHHHHHH
Confidence            99999986553  4566666667773

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=94.97  E-value=2.1  Score=46.72  Aligned_cols=202  Identities=15%  Similarity=0.167  Sum_probs=130.8

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+...+.+.|++..|+.+.- +.  ...||..|+.+++.+..+++.+...+....+      .|.+..+    +...+..
T Consensus       164 ~~~~~~~~~g~i~~Lv~lL~-~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~------l~~L~~l----l~~~~~~  230 (530)
T 1wa5_B          164 AQTKVVVDADAVPLFIQLLY-TG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNA------MEPILGL----FNSNKPS  230 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-HC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHG----GGSCCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCc------HHHHHHH----hccCCHH
Confidence            46677888999999999877 33  7899999999999999988887776654311      3333333    3345667


Q ss_pred             HHhHHHHHHHHhhcCC-hhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200          134 EFLAADRIFNSFCEKN-PDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM  212 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N-~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~  212 (657)
                      .+..|+.++..++.+. +.....+...+                    ...|+.-|.+    .|+....-|+.+|.++..
T Consensus       231 v~~~a~~~L~~L~~~~~~~~~~~~~~~~--------------------l~~L~~lL~~----~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          231 LIRTATWTLSNLCRGKKPQPDWSVVSQA--------------------LPTLAKLIYS----MDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCHHHHGGG--------------------HHHHHHHTTC----CCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCCCCCcHHHHHhH--------------------HHHHHHHHcC----CCHHHHHHHHHHHHHHhC
Confidence            7888899998777654 33332222222                    2334444422    234555567888999888


Q ss_pred             CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200          213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP  292 (657)
Q Consensus       213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s  292 (657)
                      .++..+..+..    .         .++..+..++.      ..+     ..++..-+..|..-..+++.....++..+ 
T Consensus       287 ~~~~~~~~~~~----~---------~~v~~Lv~lL~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-  341 (530)
T 1wa5_B          287 GPQEAIQAVID----V---------RIPKRLVELLS------HES-----TLVQTPALRAVGNIVTGNDLQTQVVINAG-  341 (530)
T ss_dssp             SCHHHHHHHHH----T---------TCHHHHHHGGG------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-
T ss_pred             CCHHHHHHHHh----c---------CcHHHHHHHHC------CCC-----hhhHHHHHHHHHHHHcCCHHHHHHHHHcc-
Confidence            87766554321    0         14555554442      111     23444456666666778888888888775 


Q ss_pred             hHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200          293 HLTYLLELVSNPSATVCTRGLAAVLLG  319 (657)
Q Consensus       293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG  319 (657)
                      .++.|+..+.+.  +.-|+--++..||
T Consensus       342 ~l~~L~~lL~~~--~~~vr~~A~~aL~  366 (530)
T 1wa5_B          342 VLPALRLLLSSP--KENIKKEACWTIS  366 (530)
T ss_dssp             HHHHHHHHTTCS--CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence            788899888654  5677877888887

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=94.73  E-value=4.3  Score=43.96  Aligned_cols=205  Identities=19%  Similarity=0.216  Sum_probs=131.7

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+...+.+.|.+..|+.+.- +.  ...||..|+.+++.+..+++.+...+....+      .|   .|+..+....+..
T Consensus       151 ~~~~~~~~~g~i~~L~~lL~-~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~------l~---~Ll~lL~~~~~~~  218 (528)
T 4b8j_A          151 ENTKVVIDHGAVPIFVKLLG-SS--SDDVREQAVWALGNVAGDSPKCRDLVLANGA------LL---PLLAQLNEHTKLS  218 (528)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTC------HH---HHHHTCCTTCCHH
T ss_pred             HHHHHHHhCCcHHHHHHHhc-CC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCc------HH---HHHHHHhcCCCHH
Confidence            67888999999999999877 33  6799999999999999888888777654321      22   3333333455677


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD  213 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d  213 (657)
                      .+..|+++|..++.+.+..+..+...                    ....|+..|.+    .|+.....|+.+|.++...
T Consensus       219 v~~~a~~~L~~L~~~~~~~~~~~~~~--------------------~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          219 MLRNATWTLSNFCRGKPQPSFEQTRP--------------------ALPALARLIHS----NDEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHTT--------------------HHHHHHHHTTC----CCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHcCCCCCcHHHHHH--------------------HHHHHHHHHCC----CCHHHHHHHHHHHHHHHcC
Confidence            78888999988777654443333211                    22334444422    2455566678889998887


Q ss_pred             CHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCCh
Q 006200          214 NLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPH  293 (657)
Q Consensus       214 n~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~  293 (657)
                      ++.....+..-             .++..+..++.      ..+     ..++..-+..|..-..+++.....++..+ .
T Consensus       275 ~~~~~~~~~~~-------------g~v~~Lv~lL~------~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~  329 (528)
T 4b8j_A          275 TNDKIQAVIEA-------------GVCPRLVELLL------HPS-----PSVLIPALRTVGNIVTGDDAQTQCIIDHQ-A  329 (528)
T ss_dssp             CHHHHHHHHHT-------------TCHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHTTT-H
T ss_pred             CHHHHHHHHHc-------------CHHHHHHHHHc------CCC-----hhHHHHHHHHHHHHHcCCHHHHHHHHHhh-h
Confidence            77655433211             14555555442      111     12344456666666667887777777655 6


Q ss_pred             HHHHHHHhhCCCCchHhHHHHHHHhhh
Q 006200          294 LTYLLELVSNPSATVCTRGLAAVLLGE  320 (657)
Q Consensus       294 l~~L~~~i~~~~~~~lVqGL~A~LLG~  320 (657)
                      ++.|+..+.+.. +..|+--++..||-
T Consensus       330 l~~L~~lL~~~~-~~~v~~~A~~~L~n  355 (528)
T 4b8j_A          330 LPCLLSLLTQNL-KKSIKKEACWTISN  355 (528)
T ss_dssp             HHHHHHHHHSCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-cHHHHHHHHHHHHH
Confidence            899999887542 45677677777773

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.73  E-value=1.5  Score=41.75  Aligned_cols=113  Identities=19%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHH-------HHHHH
Q 006200          456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQR-------LEILK  528 (657)
Q Consensus       456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~-------~e~l~  528 (657)
                      +.+.++|-...+-...++.+...+..|...+...++          .....+.++..|+.+|++-+..       +..++
T Consensus        27 E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~----------~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq   96 (168)
T 3o0z_A           27 DTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN----------SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQ   96 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555544432221          0123456667777777665533       22455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHH----HHHHHHHc
Q 006200          529 EEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE----KEVKALKS  578 (657)
Q Consensus       529 ~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le----~e~~~lr~  578 (657)
                      ..+..++.|++.++....+.+.+-+.|++.++.||.+...++    =+++.++.
T Consensus        97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~  150 (168)
T 3o0z_A           97 ARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ  150 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            567888999999999999999999999999999998888777    55677664

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=94.72  E-value=4.9  Score=44.07  Aligned_cols=231  Identities=15%  Similarity=0.091  Sum_probs=134.4

Q ss_pred             HhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHH
Q 006200           60 VQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAAD  139 (657)
Q Consensus        60 ~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~  139 (657)
                      .-.|++..|.++.- +  -...|+..|..+++.+..++..+...+..-.      ..|.++.|    |...+...+..|+
T Consensus       248 ~~~~~lp~L~~LL~-~--~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g------~i~~Lv~l----L~~~~~~v~~~a~  314 (529)
T 3tpo_A          248 AVEQILPTLVRLLH-H--NDPEVLADSCWAISYLTDGPNERIEMVVKKG------VVPQLVKL----LGATELPIVTPAL  314 (529)
T ss_dssp             HHHHHHHHHHHHTT-S--SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT------CHHHHHHH----HTCSCHHHHHHHH
T ss_pred             HHhhHHHHHHHHhc-C--CcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc------chHHHHHH----hcCCChhHHHHHH
Confidence            34577888888776 3  3789999999999999998877666543321      23444443    4566677788999


Q ss_pred             HHHHHhhcCChhhHHHHHh-hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHH
Q 006200          140 RIFNSFCEKNPDGQAMLTS-TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCK  218 (657)
Q Consensus       140 ~cf~ayl~~N~~~q~~L~~-tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~K  218 (657)
                      .++...+.+++..+..+.. ..                    ...|..-|-+    .++.....|+.+|.++..+++..+
T Consensus       315 ~aL~nl~~~~~~~~~~i~~~g~--------------------l~~L~~LL~~----~~~~i~~~a~~aL~nl~~~~~~~~  370 (529)
T 3tpo_A          315 RAIGNIVTGTDEQTQKVIDAGA--------------------LAVFPSLLTN----PKTNIQKEATWTMSNITAGRQDQI  370 (529)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTG--------------------GGGHHHHTTC----SSHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHccchHHHHHHhhccc--------------------HHHHHHHHcC----CCHHHHHHHHHHHHHHhcccHHHH
Confidence            9999999999877754432 22                    1223332222    133444568889999999998887


Q ss_pred             HHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHh-hcChHHHHHhhcCCChHHHH
Q 006200          219 ERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWL-ADCPNAVHCFLDSRPHLTYL  297 (657)
Q Consensus       219 e~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL-~e~p~AV~~FL~~~s~l~~L  297 (657)
                      ..+..-             -++..+..++.-.      +     ..+|..-...|+-.. .+++.-+..+...| .++.|
T Consensus       371 ~~v~~~-------------g~i~~Lv~lL~~~------~-----~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g-~i~~L  425 (529)
T 3tpo_A          371 QQVVNH-------------GLVPFLVGVLSKA------D-----FKTQKAAAWAITNYTSGGTVEQIVYLVHCG-IIEPL  425 (529)
T ss_dssp             HHHHHT-------------THHHHHHHHHHSS------C-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHTT-CHHHH
T ss_pred             HHHHhc-------------CcHHHHHHHhcCC------C-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHCc-CHHHH
Confidence            755421             1556666655411      1     112221122222222 35666666666666 69999


Q ss_pred             HHHhhCCCCchHhHHHHHHHhhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhccc
Q 006200          298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSF  361 (657)
Q Consensus       298 ~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~  361 (657)
                      ++.+...+..++..+|-|+- -||-..+..    .....+..+|..-=|    +++|..|..|+
T Consensus       426 ~~LL~~~d~~i~~~~L~aL~-nil~~~~~~----~~~~~~~~~iee~gg----l~~ie~Lq~~~  480 (529)
T 3tpo_A          426 MNLLSAKDTKIIQVILDAIS-NIFQAAEKL----GETEKLSIMIEECGG----LDKIEALQRHE  480 (529)
T ss_dssp             HHGGGCSCHHHHHHHHHHHH-HHHHHHHTT----TCHHHHHHHHHHTTC----HHHHTGGGGCS
T ss_pred             HHHhcCCCHHHHHHHHHHHH-HHHHHhHhc----cChHHHHHHHHHCCc----HHHHHHHHcCC
Confidence            99987655444433333321 111122221    123444555544334    45677777765

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=94.72  E-value=1.2  Score=48.69  Aligned_cols=218  Identities=14%  Similarity=0.107  Sum_probs=132.7

Q ss_pred             HHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccc
Q 006200           29 SALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKV  108 (657)
Q Consensus        29 ~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~  108 (657)
                      .++..+|-+++.+..          .+-..+.+.|++..|+.+.- +. ....||..|+.+++.+..+++.+...+....
T Consensus       106 ~A~~~L~~ll~~~~~----------~~~~~~~~~g~i~~Lv~~L~-~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g  173 (530)
T 1wa5_B          106 SATVKFRQILSREHR----------PPIDVVIQAGVVPRLVEFMR-EN-QPEMLQLEAAWALTNIASGTSAQTKVVVDAD  173 (530)
T ss_dssp             HHHHHHHHHTCCSSS----------CSHHHHHHTTCHHHHHHTTS-TT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCC----------ccHHHHHHCCCHHHHHHHhC-CC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence            455566656554321          23356788999999998765 21 2578999999999999999887776654321


Q ss_pred             cCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhc
Q 006200          109 LGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGL  188 (657)
Q Consensus       109 vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L  188 (657)
                            ..|.+..+|.    ..+...|..|+.+|..+...++..+..+...                   .....|+.-|
T Consensus       174 ------~i~~Lv~lL~----~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-------------------~~l~~L~~ll  224 (530)
T 1wa5_B          174 ------AVPLFIQLLY----TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-------------------NAMEPILGLF  224 (530)
T ss_dssp             ------CHHHHHHHHH----HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-------------------TCHHHHHHGG
T ss_pred             ------CHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCCccchHHHHHc-------------------CcHHHHHHHh
Confidence                  2455555544    4567888999999999999988887554421                   0122344444


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhcCC-HHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHH
Q 006200          189 TLGESDGDLEVCCRAASVLSHILMDN-LQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQL  267 (657)
Q Consensus       189 ~s~d~~~dpy~~wfAa~iL~hll~dn-~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~  267 (657)
                      .+    .++.....|+.+|..+.... +..+...              -..+++.+..++.      ..|     ..++.
T Consensus       225 ~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~--------------~~~~l~~L~~lL~------~~d-----~~v~~  275 (530)
T 1wa5_B          225 NS----NKPSLIRTATWTLSNLCRGKKPQPDWSV--------------VSQALPTLAKLIY------SMD-----TETLV  275 (530)
T ss_dssp             GS----CCHHHHHHHHHHHHHHHCCSSSCCCHHH--------------HGGGHHHHHHHTT------CCC-----HHHHH
T ss_pred             cc----CCHHHHHHHHHHHHHHhCCCCCCCcHHH--------------HHhHHHHHHHHHc------CCC-----HHHHH
Confidence            22    23444444677787777653 2221100              0124444444432      112     23444


Q ss_pred             HHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200          268 IILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLG  319 (657)
Q Consensus       268 gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG  319 (657)
                      ..+..|..-..+++..+..++..+ .++.|+..+.+.  +.-|+--++..||
T Consensus       276 ~a~~~L~~L~~~~~~~~~~~~~~~-~v~~Lv~lL~~~--~~~v~~~a~~~L~  324 (530)
T 1wa5_B          276 DACWAISYLSDGPQEAIQAVIDVR-IPKRLVELLSHE--STLVQTPALRAVG  324 (530)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHTT-CHHHHHHGGGCS--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcC-cHHHHHHHHCCC--ChhhHHHHHHHHH
Confidence            445556655666777778887765 689999988644  4556666666666

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.61  E-value=0.72  Score=61.54  Aligned_cols=25  Identities=4%  Similarity=0.205  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRN  479 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~  479 (657)
                      -+++..|+.++.++.+++++.+.++
T Consensus      1898 Leli~~y~~ll~~K~~el~~~~~rl 1922 (3245)
T 3vkg_A         1898 LDFINQVVLLINEKRDQLEEEQLHL 1922 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466777777777777766655543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.46  E-value=1.6  Score=58.22  Aligned_cols=12  Identities=17%  Similarity=0.410  Sum_probs=6.3

Q ss_pred             HHHHHhhcChHH
Q 006200          272 LLVTWLADCPNA  283 (657)
Q Consensus       272 LL~~WL~e~p~A  283 (657)
                      |+-.|.|||...
T Consensus      1538 lvrLW~HE~~RV 1549 (3245)
T 3vkg_A         1538 LVRLWAHEALRL 1549 (3245)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344566666543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=94.37  E-value=3.4  Score=47.27  Aligned_cols=185  Identities=12%  Similarity=0.164  Sum_probs=111.4

Q ss_pred             CcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhc----cCC
Q 006200            2 GFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVE----SQW   77 (657)
Q Consensus         2 ~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~----s~~   77 (657)
                      ||++|+.|++-.|..    + --.-+.=.|.++.-|+.- |+          .||+.|.++|.+..|..+.-.    ..|
T Consensus       209 aFe~Lf~Ii~~Eg~~----~-Ggivv~DCL~ll~nLLr~-N~----------sNQ~~FrEt~~i~~L~~LL~~~~~~~~W  272 (651)
T 3grl_A          209 AFERLLDIITEEGNS----D-GGIVVEDCLILLQNLLKN-NN----------SNQNFFKEGSYIQRMKPWFEVGDENSGW  272 (651)
T ss_dssp             HHHHHHHHHHHHTGG----G-SHHHHHHHHHHHHHHHTT-CH----------HHHHHHHHTTCGGGGGGGGCCCSCSSCC
T ss_pred             cHHHHHHHHHhcCCC----c-cchhHHHHHHHHHHHHhc-CH----------HHHHHHHHcCCHHHHHHHhCCCcccccc
Confidence            588999999888541    1 123333455566666642 32          799999999988887765320    135


Q ss_pred             CchHhHH--HHHHHHHHHHhc------ChhhHHHhhccccCCCCccchHHHHHHHHHhccC-chhHHhHHHHHHHHhhcC
Q 006200           78 APVAVRC--AALRCISDIIAA------HPKNRDVLASKVLGEEPQVEAALNSILRIILRTS-SMQEFLAADRIFNSFCEK  148 (657)
Q Consensus        78 ~p~~Ir~--~AL~t~adlIrg------n~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~-~~~~r~AA~~cf~ayl~~  148 (657)
                      ++-.++-  -+|.++.=++.+      ++.||..|.+--         .+..|++..+..+ +...++.|..++-....+
T Consensus       273 ~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g---------~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg  343 (651)
T 3grl_A          273 SAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG---------LLQQLCTILMATGVPADILTETINTVSEVIRG  343 (651)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT---------HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC---------CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence            4333333  166666666665      456788776543         2445566655433 346678899999999999


Q ss_pred             ChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhH-HHHHHHHHHHHhcCCHHHHHHHhccc
Q 006200          149 NPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEV-CCRAASVLSHILMDNLQCKERVLRIE  225 (657)
Q Consensus       149 N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~-~wfAa~iL~hll~dn~~~Ke~al~V~  225 (657)
                      |+..|..+...-.|+..+          .+..-.+|+..+ ..   ..++. -+-|+..|--.+.+|+..+.....--
T Consensus       344 N~~~Q~~fa~~~vp~~~~----------~p~li~lL~~~~-~~---~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~l  407 (651)
T 3grl_A          344 CQVNQDYFASVNAPSNPP----------RPAIVVLLMSMV-NE---RQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTL  407 (651)
T ss_dssp             CHHHHHHHHHCEESSSSC----------EEHHHHHHHHHT-CT---TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHhhccCCCCCC----------cChHHHHHHHHh-cc---cccHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence            999999888877776321          122233333222 11   12222 23355566777788987776555443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=94.15  E-value=5  Score=41.87  Aligned_cols=203  Identities=17%  Similarity=0.154  Sum_probs=125.4

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+...+.+.|++..|+.+.- +.  ...||..|+.+++.+..+++.++..+....+      .|.+..+   +-...+..
T Consensus        98 ~~~~~~~~~~~i~~L~~lL~-~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~L~~~---l~~~~~~~  165 (450)
T 2jdq_A           98 LQTRIVIQAGAVPIFIELLS-SE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNI------LPPLLQL---FSKQNRLT  165 (450)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHH---TTSCCCHH
T ss_pred             HHHHHHHhCCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCC------HHHHHHH---hcCCCCHH
Confidence            45667788999999999876 43  6799999999999999988877776654221      2333333   22235677


Q ss_pred             HHhHHHHHHHHhhcCC-hhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200          134 EFLAADRIFNSFCEKN-PDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM  212 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N-~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~  212 (657)
                      .|..|+.++..++.++ +..+..+.                    ......|+..+-+    .|+....-|+.+|.++..
T Consensus       166 v~~~a~~~L~~l~~~~~~~~~~~~~--------------------~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~  221 (450)
T 2jdq_A          166 MTRNAVWALSNLCRGKSPPPEFAKV--------------------SPCLNVLSWLLFV----SDTDVLADACWALSYLSD  221 (450)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCGGGT--------------------GGGHHHHHHHTTC----CCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhCCCCCCCCHHHH--------------------HHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHC
Confidence            8888899998877654 22211110                    1122334544422    244455557788888888


Q ss_pred             CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200          213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP  292 (657)
Q Consensus       213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s  292 (657)
                      ..+..+.....             ..++..+..++.      ..+     ..+|..-+..|..-..+++.....++..+ 
T Consensus       222 ~~~~~~~~~~~-------------~~~i~~L~~ll~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-  276 (450)
T 2jdq_A          222 GPNDKIQAVID-------------AGVCRRLVELLM------HND-----YKVVSPALRAVGNIVTGDDIQTQVILNCS-  276 (450)
T ss_dssp             SSHHHHHHHHH-------------TTTHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHTTT-
T ss_pred             CCcHHHHHHHH-------------cCcHHHHHHHHC------CCc-----hhHHHHHHHHHHHHhhCChHHHHHHHHCc-
Confidence            76655543321             014455554442      112     12344455666666667777777777665 


Q ss_pred             hHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200          293 HLTYLLELVSNPSATVCTRGLAAVLLG  319 (657)
Q Consensus       293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG  319 (657)
                      .++.|+..+.++  +..|+--++..||
T Consensus       277 ~l~~L~~ll~~~--~~~vr~~a~~~L~  301 (450)
T 2jdq_A          277 ALQSLLHLLSSP--KESIKKEACWTIS  301 (450)
T ss_dssp             HHHHHHHHTTCS--SHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence            789999888654  4667777777777

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.98  E-value=0.45  Score=57.70  Aligned_cols=13  Identities=15%  Similarity=0.204  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH
Q 006200          474 KLLGRNATLAEEL  486 (657)
Q Consensus       474 ~L~~~~~~L~~~l  486 (657)
                      +|+.++..|+.++
T Consensus       925 ~LE~kl~eLq~rL  937 (1080)
T 2dfs_A          925 GLENKIMQLQRKI  937 (1080)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.70  E-value=1.4  Score=49.23  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200          541 YRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS  578 (657)
Q Consensus       541 ~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~  578 (657)
                      +++...++|..++.-..++.++.+++..+.+|++++.+
T Consensus       542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444445555555555555544

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=93.51  E-value=2  Score=47.06  Aligned_cols=202  Identities=14%  Similarity=0.159  Sum_probs=121.6

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCch-
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSM-  132 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~-  132 (657)
                      .+.+++.+.|.+..|+++.- ++  ...||..|+.+++.+...++.+++.+.+-.+      .|.+..+|.    ..+. 
T Consensus       134 e~~~~vv~~GaIp~Lv~lL~-s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~------i~~Ll~lL~----~~~~~  200 (510)
T 3ul1_B          134 EQTKAVVDGGAIPAFISLLA-SP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGA------IDPLLALLA----VPDLS  200 (510)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHHTC----SSCGG
T ss_pred             HHHHHHHHCCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC------hHHHHHHHH----hccch
Confidence            57788999999999999876 43  7899999999999999989999988766533      233333332    2221 


Q ss_pred             ----hHHhHHHHHHHHhhcCChhhH-HHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHH
Q 006200          133 ----QEFLAADRIFNSFCEKNPDGQ-AMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVL  207 (657)
Q Consensus       133 ----~~r~AA~~cf~ayl~~N~~~q-~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL  207 (657)
                          .....+++++...+.+..... ...+..+                    ...|..-|.+    .++.....|+.+|
T Consensus       201 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~--------------------lp~L~~LL~~----~~~~v~~~A~~aL  256 (510)
T 3ul1_B          201 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI--------------------LPTLVRLLHH----NDPEVLADSCWAI  256 (510)
T ss_dssp             GSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHH--------------------HHHHHHHTTC----SCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhhcccchhHHHHHHhH--------------------HHHHHHHHhc----CCHHHHHHHHHHH
Confidence                122345556555544332111 1111111                    1223333322    2445566688899


Q ss_pred             HHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHh
Q 006200          208 SHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCF  287 (657)
Q Consensus       208 ~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~F  287 (657)
                      .++...+...+..+..-             -++..++.++.      +.+     ..++..-++.|.--..+++.....+
T Consensus       257 ~~L~~~~~~~~~~i~~~-------------g~i~~Lv~lL~------~~~-----~~v~~~al~aL~nl~~~~~~~~~~i  312 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKK-------------GVVPQLVKLLG------ATE-----LPIVTPALRAIGNIVTGTDEQTQKV  312 (510)
T ss_dssp             HHHTSSCHHHHHHHHTT-------------TCHHHHHHHHT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhc-------------ccchhhhhhhc------CCC-----hhhhhHHHHHHHHhhcCCHHHHHHH
Confidence            99998887766643221             14555555543      111     1234445666666667777777777


Q ss_pred             hcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200          288 LDSRPHLTYLLELVSNPSATVCTRGLAAVLLG  319 (657)
Q Consensus       288 L~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG  319 (657)
                      +..+ .++.|+..+.+  .+.-|+--+|..|+
T Consensus       313 ~~~g-~l~~L~~LL~~--~~~~v~~~A~~aL~  341 (510)
T 3ul1_B          313 IDAG-ALAVFPSLLTN--PKTNIQKEATWTMS  341 (510)
T ss_dssp             HHTT-GGGGCC-CTTC--SSHHHHHHHHHHHH
T ss_pred             hhcc-chHHHHHHhcC--CCHHHHHHHHHHHH
Confidence            7766 47777766653  34567777777777

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=93.50  E-value=2.9  Score=40.21  Aligned_cols=133  Identities=17%  Similarity=0.109  Sum_probs=93.1

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .++..+.+.|.+..|+.+.- +.  ...||..|+.+++.+..++...+..+....+      .|.+.    .+|...+..
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~L~----~lL~~~~~~  153 (252)
T 4db8_A           87 EQIQAVIDAGALPALVQLLS-SP--NEQILQEALWALSNIASGGNEQIQAVIDAGA------LPALV----QLLSSPNEQ  153 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGGG-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH------HHHHH----HGGGCSCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHc-CC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCC------HHHHH----HHHhCCCHH
Confidence            67888999999999999877 33  5799999999999998887766455443311      23332    234566778


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD  213 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d  213 (657)
                      .+..|+.++.....++++.+..+...                   .....|+..|.+.    ++.....|+.+|.++...
T Consensus       154 v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~  210 (252)
T 4db8_A          154 ILQEALWALSNIASGGNEQIQAVIDA-------------------GALPALVQLLSSP----NEQILQEALWALSNIASG  210 (252)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHT-------------------TCHHHHHHGGGCS----SHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHC-------------------CCHHHHHHHHCCC----CHHHHHHHHHHHHHHhcC
Confidence            88999999999998887776544421                   1123455555332    455556688899999988


Q ss_pred             CHHHHHHHh
Q 006200          214 NLQCKERVL  222 (657)
Q Consensus       214 n~~~Ke~al  222 (657)
                      ++..+..+.
T Consensus       211 ~~~~~~~~~  219 (252)
T 4db8_A          211 GNEQKQAVK  219 (252)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            888777554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.35  E-value=2.2  Score=40.66  Aligned_cols=48  Identities=25%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      .+..++.+...++..-..=..+....+..+..|+..+..|..|++.++
T Consensus        63 ~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k  110 (168)
T 3o0z_A           63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK  110 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333344444444555555555555554

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.77  E-value=1.9  Score=36.38  Aligned_cols=63  Identities=19%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQ  533 (657)
Q Consensus       454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~  533 (657)
                      |.++.+.|-+.|..--..|+-|+-++..|+++                        ..+|..+.++++...+.+..++.+
T Consensus         4 S~ElleqLE~KIq~avdtI~lLqmEieELKek------------------------N~~L~~e~~e~~~~~~~L~~en~q   59 (81)
T 2jee_A            4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEK------------------------NNSLSQEVQNAQHQREELERENNH   59 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            56788888888888888887777777777773                        244555555555555555656655


Q ss_pred             HHHHHHH
Q 006200          534 IESDSSM  540 (657)
Q Consensus       534 ~eae~~~  540 (657)
                      ++.|...
T Consensus        60 Lk~E~~~   66 (81)
T 2jee_A           60 LKEQQNG   66 (81)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.66  E-value=2.6  Score=39.00  Aligned_cols=20  Identities=15%  Similarity=0.655  Sum_probs=13.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHH
Q 006200          453 SDKDYVKRLKAFVEKQCSEI  472 (657)
Q Consensus       453 ~s~~~v~~lk~~i~~Q~~ei  472 (657)
                      .+.+++..+-..|.++-.+|
T Consensus        25 e~ee~L~~vA~~vd~km~ei   44 (138)
T 3hnw_A           25 ESEEYLQRVASYINNKITEF   44 (138)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH
Confidence            35677776666666666665

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.16  E-value=4  Score=35.60  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +.++.++..++...+...+....++.++........+.+.++.+|+.++..+|.++-+++..+..++
T Consensus         5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~   71 (101)
T 3u1c_A            5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE   71 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555554444555566666666666677777777777777777777776666666554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=91.34  E-value=15  Score=38.09  Aligned_cols=206  Identities=14%  Similarity=0.149  Sum_probs=129.5

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcC-hhhHHHhhccccCCCCccchHHHHHHHHHhccCch
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAH-PKNRDVLASKVLGEEPQVEAALNSILRIILRTSSM  132 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn-~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~  132 (657)
                      .++..+.+.|++..|+.+.-.  .....||..|+.+++.+.+++ +.....+    +      ..++..|+.. +...+.
T Consensus       140 ~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~------~~~l~~L~~~-l~~~~~  206 (450)
T 2jdq_A          140 MCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEFAK----V------SPCLNVLSWL-LFVSDT  206 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSSSCCCGGG----T------GGGHHHHHHH-TTCCCH
T ss_pred             HHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHH----H------HHHHHHHHHH-HccCCH
Confidence            356677788999999888662  247899999999999999876 3322111    1      1233333333 345667


Q ss_pred             hHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200          133 QEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM  212 (657)
Q Consensus       133 ~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~  212 (657)
                      ..+..|+.++..+....++.+..+...                   .....|+..|.+    .++.....|+.+|..+..
T Consensus       207 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~  263 (450)
T 2jdq_A          207 DVLADACWALSYLSDGPNDKIQAVIDA-------------------GVCRRLVELLMH----NDYKVVSPALRAVGNIVT  263 (450)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHT-------------------TTHHHHHHHTTC----SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHc-------------------CcHHHHHHHHCC----CchhHHHHHHHHHHHHhh
Confidence            788899999998887766655433311                   012234444422    244555667788888888


Q ss_pred             CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200          213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP  292 (657)
Q Consensus       213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s  292 (657)
                      .++..+..+..-             .++..+..++.      ..+     ..+|..-++.|..-..+++..+..++..+ 
T Consensus       264 ~~~~~~~~~~~~-------------~~l~~L~~ll~------~~~-----~~vr~~a~~~L~~l~~~~~~~~~~~~~~~-  318 (450)
T 2jdq_A          264 GDDIQTQVILNC-------------SALQSLLHLLS------SPK-----ESIKKEACWTISNITAGNRAQIQTVIDAN-  318 (450)
T ss_dssp             SCHHHHHHHHTT-------------THHHHHHHHTT------CSS-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-
T ss_pred             CChHHHHHHHHC-------------ccHHHHHHHHc------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHCC-
Confidence            877665543211             15555555543      111     23444456666666667888888888765 


Q ss_pred             hHHHHHHHhhCCCCchHhHHHHHHHhhhhH
Q 006200          293 HLTYLLELVSNPSATVCTRGLAAVLLGECV  322 (657)
Q Consensus       293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG~Cv  322 (657)
                      -++.|+..+.+.  +.-|+.-++..||-+.
T Consensus       319 ~l~~L~~~l~~~--~~~v~~~a~~~L~~l~  346 (450)
T 2jdq_A          319 IFPALISILQTA--EFRTRKEAAWAITNAT  346 (450)
T ss_dssp             HHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence            688899888643  5678888888887433

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=91.32  E-value=11  Score=39.56  Aligned_cols=215  Identities=13%  Similarity=0.061  Sum_probs=126.3

Q ss_pred             hhHHHHHhhcHHHHHHHHHhcc--------CCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHH
Q 006200           54 TNKTVLVQKKALDNLLMLAVES--------QWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRI  125 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s--------~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~  125 (657)
                      .|+..|.+.|.+..|+.+....        ......++..|..++..+-+++..+...+...     ....|.++.||  
T Consensus        64 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~-----~GaIp~LV~LL--  136 (354)
T 3nmw_A           64 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM-----KGCMRALVAQL--  136 (354)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC-----HHHHHHHHHGG--
T ss_pred             HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-----CCcHHHHHHHH--
Confidence            7999999999999999886310        11236789999999999999998777665321     11134444443  


Q ss_pred             HhccCchhHHhHHHHHHHHhhcC-ChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHH
Q 006200          126 ILRTSSMQEFLAADRIFNSFCEK-NPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAA  204 (657)
Q Consensus       126 ~L~~~~~~~r~AA~~cf~ayl~~-N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa  204 (657)
                        ...+...+..|+.++...-++ |++.+..+...        +           ....|..-|....   ++....-|+
T Consensus       137 --~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--------G-----------~Ip~Lv~lL~~~~---~~~~~~~A~  192 (354)
T 3nmw_A          137 --KSESEDLQQVIASVLRNLSWRADVNSKKTLREV--------G-----------SVKALMECALEVK---KESTLKSVL  192 (354)
T ss_dssp             --GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--------T-----------HHHHHHHHHHHCC---CHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--------C-----------CHHHHHHHHhcCC---CHHHHHHHH
Confidence              456667777788888776664 67777655521        0           1122343332211   233344466


Q ss_pred             HHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCC-CCcchhHHHHHHHHHHHHhhcChHH
Q 006200          205 SVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDG-TGKAGYIQLIILKLLVTWLADCPNA  283 (657)
Q Consensus       205 ~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~-ri~~~~~~~gyL~LL~~WL~e~p~A  283 (657)
                      -+|..|-..++..|......  .+          .+..++.+|.     ...+. .+.+-..-.+.|+-|+.-+.+++..
T Consensus       193 ~aL~nLs~~~~~nk~~i~~~--~G----------ai~~Lv~lL~-----~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~  255 (354)
T 3nmw_A          193 SALWNLSAHCTENKADICAV--DG----------ALAFLVGTLT-----YRSQTNTLAIIESGGGILRNVSSLIATNEDH  255 (354)
T ss_dssp             HHHHHHHTTCHHHHHHHHHS--TT----------HHHHHHHHTT-----CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHccChhhhHHHHHh--cC----------cHHHHHHHhc-----cCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence            67777777677777544321  11          3444444442     11110 0111111224566666555688888


Q ss_pred             HHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200          284 VHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLG  319 (657)
Q Consensus       284 V~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG  319 (657)
                      ...+...+ -++.|++.+.+.+  .-++--++..|+
T Consensus       256 ~~~i~~~g-~i~~Lv~lL~~~~--~~v~~~A~~aL~  288 (354)
T 3nmw_A          256 RQILRENN-CLQTLLQHLKSHS--LTIVSNACGTLW  288 (354)
T ss_dssp             HHHHHTTT-HHHHHHHHTTCSC--HHHHHHHHHHHH
T ss_pred             HHHHHHcC-CHHHHHHHHcCCC--hHHHHHHHHHHH
Confidence            87777766 5999999996543  335555555555

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.89  E-value=1.5  Score=41.26  Aligned_cols=13  Identities=15%  Similarity=0.118  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHH
Q 006200          508 VQVETLRKDLHEA  520 (657)
Q Consensus       508 ~q~e~L~~~L~~~  520 (657)
                      .++..+++.|+..
T Consensus        20 D~L~~~R~el~~~   32 (154)
T 2ocy_A           20 EQLNKSLKTIASQ   32 (154)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=89.67  E-value=3.4  Score=37.36  Aligned_cols=64  Identities=11%  Similarity=0.129  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES  536 (657)
Q Consensus       457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ea  536 (657)
                      +|++|+..|.....+++.++.+-...-.                    ..+.++.+|+.+|++.++.......++..++.
T Consensus        16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~--------------------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~   75 (120)
T 3i00_A           16 LIERLYREISGLKAQLENMKTESQRVVL--------------------QLKGHVSELEADLAEQQHLRQQAADDCEFLRA   75 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6766766666655555544333111111                    22445566666666655544333444444444


Q ss_pred             HHHH
Q 006200          537 DSSM  540 (657)
Q Consensus       537 e~~~  540 (657)
                      +++.
T Consensus        76 e~~~   79 (120)
T 3i00_A           76 ELDE   79 (120)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.99  E-value=7.1  Score=33.94  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRN  543 (657)
Q Consensus       509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~  543 (657)
                      ++..|..+|.+.+......+.++.+++.|++++..
T Consensus        27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa   61 (97)
T 2eqb_B           27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   61 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666555556666666666666543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=88.92  E-value=21  Score=39.05  Aligned_cols=216  Identities=13%  Similarity=0.057  Sum_probs=125.7

Q ss_pred             hhhHHHHHhhcHHHHHHHHHhc--------cCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHH
Q 006200           53 LTNKTVLVQKKALDNLLMLAVE--------SQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILR  124 (657)
Q Consensus        53 ~~nQ~~l~q~glL~~ll~La~~--------s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~  124 (657)
                      ..|...|.+.|.+..|+.+...        .......++..|..++..+-+++..+...+...     ....|.++.|  
T Consensus       179 ~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~-----~GaIp~LV~L--  251 (458)
T 3nmz_A          179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM-----KGCMRALVAQ--  251 (458)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC-----HHHHHHHHHG--
T ss_pred             HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHc-----CCcHHHHHHH--
Confidence            4689999999999999998631        011245789999999999999998777666321     1113444444  


Q ss_pred             HHhccCchhHHhHHHHHHHHhhcC-ChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHH
Q 006200          125 IILRTSSMQEFLAADRIFNSFCEK-NPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRA  203 (657)
Q Consensus       125 ~~L~~~~~~~r~AA~~cf~ayl~~-N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfA  203 (657)
                        |...+...+..|+.++...-.+ |++.+..+...        +           ....|..-|....   ++....-|
T Consensus       252 --L~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~--------G-----------aI~~LV~lLl~s~---~~~v~~~A  307 (458)
T 3nmz_A          252 --LKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--------G-----------SVKALMECALEVK---KESTLKSV  307 (458)
T ss_dssp             --GGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT--------T-----------HHHHHHHHHTTCC---SHHHHHHH
T ss_pred             --HhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--------C-----------CHHHHHHHHhcCC---CHHHHHHH
Confidence              3456677777788888766554 66676555521        0           1122444332211   23334446


Q ss_pred             HHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCC-CCcchhHHHHHHHHHHHHhhcChH
Q 006200          204 ASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDG-TGKAGYIQLIILKLLVTWLADCPN  282 (657)
Q Consensus       204 a~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~-ri~~~~~~~gyL~LL~~WL~e~p~  282 (657)
                      +-+|..|-..++..|..+...  .+          .+..++.+|.     ...+. .+.+-..-.+.|.-|+.-+.+++.
T Consensus       308 ~~aL~nLs~~~~~nk~~I~~~--~G----------al~~Lv~LL~-----~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~  370 (458)
T 3nmz_A          308 LSALWNLSAHCTENKADICAV--DG----------ALAFLVGTLT-----YRSQTNTLAIIESGGGILRNVSSLIATNED  370 (458)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHS--TT----------HHHHHHHHTT-----CCCSSSTTHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHccCCHHHHHHHHHh--cC----------cHHHHHHHhc-----CCCCcchHHHHHHHHHHHHHHHhcccCCHH
Confidence            667777766566666544321  11          3444444432     11111 001111112456666655668888


Q ss_pred             HHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200          283 AVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLG  319 (657)
Q Consensus       283 AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG  319 (657)
                      ....+...+ .++.|++.+.+.+  .-|+--++..|+
T Consensus       371 ~~~~i~~~G-~i~~Lv~LL~~~~--~~v~~~A~~aL~  404 (458)
T 3nmz_A          371 HRQILRENN-CLQTLLQHLKSHS--LTIVSNACGTLW  404 (458)
T ss_dssp             HHHHHHHTT-HHHHHHHHSSCSC--HHHHHHHHHHHH
T ss_pred             HHHHHHHcc-cHHHHHHHHcCCC--hHHHHHHHHHHH
Confidence            888888777 5999999986543  335555555555

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.69  E-value=4.3  Score=36.79  Aligned_cols=24  Identities=13%  Similarity=0.093  Sum_probs=17.1

Q ss_pred             HhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          605 AELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       605 ~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      .|-.+||=+=.-+|--+.-||+.|
T Consensus       103 ~EYq~LlnvKl~Ld~EIatYRkLL  126 (129)
T 3tnu_B          103 REYQELMNTKLALDVEIATYRKLL  126 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Confidence            455667777667777788888655

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.47  E-value=4  Score=37.13  Aligned_cols=24  Identities=17%  Similarity=0.117  Sum_probs=17.8

Q ss_pred             HhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          605 AELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       605 ~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      .|-.+||=+=.-+|--+.-||+.|
T Consensus       105 ~EYq~Ll~vKl~Ld~EIatYRkLL  128 (131)
T 3tnu_A          105 QEYKILLDVKTRLEQEIATYRRLL  128 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Confidence            456677777777888888888765

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=88.35  E-value=3.9  Score=38.28  Aligned_cols=63  Identities=19%  Similarity=0.161  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          515 KDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       515 ~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      ..+..+++.+..++.++..++.++..-.+....++.++..|+.+++.+|..+.++++|++.|=
T Consensus        68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555666666666666666677777777778888888888888888876663

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.04  E-value=7.7  Score=32.65  Aligned_cols=46  Identities=15%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006200          510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSL  555 (657)
Q Consensus       510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~l  555 (657)
                      ++.|+.+-..+.+..+.++..+..+..+...+++-...|+.++.+|
T Consensus        29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A           29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444555555555444444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=87.63  E-value=4.4  Score=34.36  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200          597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARL  628 (657)
Q Consensus       597 ~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L  628 (657)
                      +.....+++++|++-+.=.|++.|+.-++.-+
T Consensus        48 E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl   79 (86)
T 3swk_A           48 ENTLQSFRQDVDNASLARLDLERKVESLQEEI   79 (86)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777788888888888888888776543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.59  E-value=16  Score=33.04  Aligned_cols=8  Identities=25%  Similarity=0.605  Sum_probs=3.0

Q ss_pred             HHHHhHhH
Q 006200          602 ESEAELND  609 (657)
Q Consensus       602 ~~~~e~~d  609 (657)
                      ++++.++|
T Consensus       115 ~Lk~~led  122 (129)
T 2fxo_A          115 ELKRDIDD  122 (129)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=87.33  E-value=19  Score=33.77  Aligned_cols=21  Identities=24%  Similarity=0.117  Sum_probs=9.8

Q ss_pred             HHHHHHhHhHHHHHhhhhhhh
Q 006200          600 QKESEAELNDLLVCLGQEQSK  620 (657)
Q Consensus       600 ~~~~~~e~~dLl~ll~d~~~K  620 (657)
                      .+.++.++++.+-=|.....|
T Consensus       121 ~~~i~~eLd~tl~el~~~~~~  141 (155)
T 2efr_A          121 YKAISEEMKQLEDKVEELLSK  141 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccc
Confidence            444555555544444433333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=87.15  E-value=14  Score=31.97  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      +.++.++...+...+...+....++.++........+.+.++.+|+.++..++.+.-.++..+..+.
T Consensus         5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~   71 (101)
T 3u59_A            5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ   71 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555544444444445555555555555666666666666666666666666555555544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=86.16  E-value=39  Score=36.15  Aligned_cols=127  Identities=15%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             CCcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCch
Q 006200            1 MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPV   80 (657)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~   80 (657)
                      |.+.+++.+|+-.    .+.-|     ..+...++-|.. +++          .+...+.+.|.+..|+++.- +.  ..
T Consensus         2 ~~l~~lv~~L~s~----~~~~q-----~~A~~~L~~l~~-~~~----------~~~~~i~~~g~i~~Lv~lL~-s~--~~   58 (457)
T 1xm9_A            2 LTIPKAVQYLSSQ----DEKYQ-----AIGAYYIQHTCF-QDE----------SAKQQVYQLGGICKLVDLLR-SP--NQ   58 (457)
T ss_dssp             CCHHHHHHHHHSS----CTHHH-----HHHHHHHHHHTS-SCS----------SHHHHHHHTTHHHHHHHHTT-SS--CH
T ss_pred             CCHHHHHHHHCCC----CHHHH-----HHHHHHHHHHHc-CCh----------HHHHHHHHcCCHHHHHHHHc-CC--CH
Confidence            4567788888743    22222     234455555543 221          45668899999999999877 43  57


Q ss_pred             HhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200           81 AVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTL  160 (657)
Q Consensus        81 ~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl  160 (657)
                      .++..|..++..+..+|+.|...+..--+      .|.++.||.   ...+...+.-|..++...... ++.+..+++..
T Consensus        59 ~~~~~A~~aL~nLa~~~~~~k~~i~~~G~------i~~Lv~lL~---~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~  128 (457)
T 1xm9_A           59 NVQQAAAGALRNLVFRSTTNKLETRRQNG------IREAVSLLR---RTGNAEIQKQLTGLLWNLSST-DELKEELIADA  128 (457)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHTTC------HHHHHHHHT---TCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCC------HHHHHHHHh---hCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhcc
Confidence            89999999999999999999888765432      455555542   144556666667777765555 66775444333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=85.85  E-value=4.2  Score=34.47  Aligned_cols=11  Identities=18%  Similarity=0.510  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q 006200          511 ETLRKDLHEAS  521 (657)
Q Consensus       511 e~L~~~L~~~~  521 (657)
                      +.||+|+..++
T Consensus         3 ~eLr~qi~~l~   13 (86)
T 3swk_A            3 RELRRQVDQLT   13 (86)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444444333

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=85.34  E-value=21  Score=35.43  Aligned_cols=191  Identities=14%  Similarity=0.176  Sum_probs=107.5

Q ss_pred             CCcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCch
Q 006200            1 MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPV   80 (657)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~   80 (657)
                      |.+.+++++|.-.    ....+...+...   .++.|....           ..|...+.+.|.+..|+++.- |.  ..
T Consensus         8 ~~i~~lV~lL~s~----~~~~~~q~~Aa~---~l~~L~~~~-----------~~~r~~I~~~G~Ip~LV~lL~-s~--~~   66 (233)
T 3tt9_A            8 MTLERAVSMLEAD----HMLPSRISAAAT---FIQHECFQK-----------SEARKRVNQLRGILKLLQLLK-VQ--NE   66 (233)
T ss_dssp             CCHHHHHHTCCSS----CCCHHHHHHHHH---HHHHHHHHC-----------HHHHHHHHHTTHHHHHHHGGG-CC--CH
T ss_pred             ccHHHHHHHhCCC----CchHHHHHHHHH---HHHHHHcCC-----------cHHHHHHHHcCCHHHHHHHHc-CC--CH
Confidence            4566777777533    222244444433   345554321           157888999999999999876 43  68


Q ss_pred             HhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHhh-
Q 006200           81 AVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTST-  159 (657)
Q Consensus        81 ~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~t-  159 (657)
                      .++..|..++..+-.+|+.|.......     + ..|.++.||..   ..+...+-.|..++.. +..++..+..|.+. 
T Consensus        67 ~vq~~Aa~aL~nLa~~~~~nk~~I~~~-----G-aI~~Lv~lL~~---~~~~~~~e~a~~aL~n-LS~~~~~k~~i~~~~  136 (233)
T 3tt9_A           67 DVQRAVCGALRNLVFEDNDNKLEVAEL-----N-GVPRLLQVLKQ---TRDLETKKQITGLLWN-LSSNDKLKNLMITEA  136 (233)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT-----T-HHHHHHHHHHH---CCCHHHHHHHHHHHHH-HHTSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHc-----C-CHHHHHHHHcc---CCCHHHHHHHHHHHHH-HHcChhhHHHHHhcc
Confidence            999999999999999999998876653     2 25566666543   3344444223322222 23455666444332 


Q ss_pred             hcCCCCCCCCCCCcccccCChhHHHhhhcccCC-----CCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCC
Q 006200          160 LIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGE-----SDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLG  234 (657)
Q Consensus       160 l~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d-----~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~  234 (657)
                      |.|-..-              ......|....+     ...++....-|+-+|..|=..+++.|..+++-.         
T Consensus       137 i~~Lv~l--------------l~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~---------  193 (233)
T 3tt9_A          137 LLTLTEN--------------IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD---------  193 (233)
T ss_dssp             HHHHCCC--------------CCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTST---------
T ss_pred             HHHHHHH--------------HhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---------
Confidence            2110000              000001110000     112444445577888888777888888776532         


Q ss_pred             CCcchHHHHHHHHH
Q 006200          235 AAEPLMHRMVRYLA  248 (657)
Q Consensus       235 ~~e~ll~~i~~~l~  248 (657)
                       |  ++..++.++.
T Consensus       194 -G--li~~Lv~~l~  204 (233)
T 3tt9_A          194 -G--LIDSLVHYVR  204 (233)
T ss_dssp             -T--HHHHHHHHHH
T ss_pred             -C--cHHHHHHHHH
Confidence             1  5566666655

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=85.18  E-value=20  Score=31.87  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHH
Q 006200          511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVK  574 (657)
Q Consensus       511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~  574 (657)
                      ..|+.++..+....+.+...++.+|-.-.++....-..-+.|..+..+||..-..+.=||.|+.
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~  101 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445444444444444444455444444444444444555555555554444555555543

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.93  E-value=21  Score=32.13  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      ++-+..||..|..-..+|+.++.++.+|...+
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l   66 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAI   66 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            44455566666666666666666666666544

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=84.59  E-value=7.4  Score=32.41  Aligned_cols=46  Identities=17%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200          532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK  577 (657)
Q Consensus       532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr  577 (657)
                      ..++..+......+.+.+.++.+|+.++..||.+.-+.++.+..+.
T Consensus        23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~   68 (81)
T 1ic2_A           23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ   68 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555666666666666555555555544443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.42  E-value=4.6  Score=44.63  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200          461 LKAFVEKQCSEIQKLLGRNATLAEELAKI  489 (657)
Q Consensus       461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~  489 (657)
                      |+..|-+|++.+   ..++..|..++.+.
T Consensus        51 LQglLdkqErDl---tkrINELKnqLEdl   76 (562)
T 3ghg_A           51 MKGLIDEVNQDF---TNRINKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHTHH
T ss_pred             hhhhHHhhcCcH---HHHHHHHHHHHHHH
Confidence            667777777665   44555555555444

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=83.53  E-value=49  Score=35.05  Aligned_cols=91  Identities=7%  Similarity=0.082  Sum_probs=68.5

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .|+..+.+.|.+..|+++.- +.  ...++..|+.+++.+..++..++..+....+      .|.+..    ++...+..
T Consensus        92 ~~~~~i~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~~----ll~~~~~~  158 (529)
T 1jdh_A           92 EGLLAIFKSGGIPALVKMLG-SP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGG------LQKMVA----LLNKTNVK  158 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTH------HHHHHH----GGGCCCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCcchHHHHHHcCC------HHHHHH----HHhcCCHH
Confidence            57888999999999999865 33  5789999999999999988777776644322      233333    34456677


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHH
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLT  157 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~  157 (657)
                      .+.++..++..+..+|++.+..+.
T Consensus       159 ~~~~~~~~L~~la~~~~~~~~~i~  182 (529)
T 1jdh_A          159 FLAITTDCLQILAYGNQESKLIIL  182 (529)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHH
Confidence            788888999999999988886554

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=83.45  E-value=6.1  Score=36.43  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=12.2

Q ss_pred             HHhHHHhHHHHhHHHHHhHhHHHHHH
Q 006200          549 ESDLKSLSDAYNSLEQTNFHLEKEVK  574 (657)
Q Consensus       549 e~~l~~ls~~~~~Le~~~~~le~e~~  574 (657)
                      +..+..|...++.|+.++.+|+.++.
T Consensus       109 ~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A          109 AKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444455555555555443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.19  E-value=21  Score=32.34  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          458 VKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      +..||..|..-..+|+.++..+.+|...+
T Consensus        40 i~elrr~iq~L~~el~~l~~~~~sLE~~l   68 (131)
T 3tnu_A           40 ISELRRTMQNLEIELQSQLSMKASLENSL   68 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33455555555555555555555555543

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=82.67  E-value=30  Score=31.95  Aligned_cols=77  Identities=19%  Similarity=0.283  Sum_probs=52.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 006200          452 ESDKDYVKRLKAFVEKQCSEI----QKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEIL  527 (657)
Q Consensus       452 ~~s~~~v~~lk~~i~~Q~~ei----q~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l  527 (657)
                      ...|.||.+=|..+...+..+    .+|+.-+..|..++.+.|-        |    ....+++.+..++..+.+.++.+
T Consensus         6 ~~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~Rgv--------r----P~~~ql~~v~kdi~~a~~eL~~m   73 (141)
T 3okq_A            6 SSNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRS--------Q----PAKKKLETVSKDLENAQADVLKL   73 (141)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC--------C----CCHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999888887654    5666667777777765552        1    33678888888888888777655


Q ss_pred             HH----HH----HHHHHHHHH
Q 006200          528 KE----EK----AQIESDSSM  540 (657)
Q Consensus       528 ~~----e~----~~~eae~~~  540 (657)
                      +.    ++    ..||+|+.+
T Consensus        74 ~~~i~~ekP~WKKiWE~EL~~   94 (141)
T 3okq_A           74 QEFIDTEKPHWKKTWEAELDK   94 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCchhHHHHHHHHHH
Confidence            44    32    555555554

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.73  E-value=13  Score=40.07  Aligned_cols=12  Identities=33%  Similarity=0.614  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHH
Q 006200          513 LRKDLHEASQRL  524 (657)
Q Consensus       513 L~~~L~~~~~~~  524 (657)
                      |+++|.+.++..
T Consensus       402 ~~~~~~~~~~~~  413 (471)
T 3mq9_A          402 LQQELTEAQKGF  413 (471)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhH
Confidence            455555544443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=81.34  E-value=61  Score=36.05  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=113.2

Q ss_pred             HHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhH
Q 006200           58 VLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLA  137 (657)
Q Consensus        58 ~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~A  137 (657)
                      +....|.+..|..+.- +.  ...||..|+.+++.+..++. +...+..     .+   -++..|+..+-...+...+.+
T Consensus         9 ~~~~~g~i~~Lv~lL~-~~--~~~vr~~A~~~L~~La~~~~-~~~~i~~-----~~---~~i~~Lv~~L~~~~~~~~~~~   76 (644)
T 2z6h_A            9 AELATRAIPELTKLLN-DE--DQVVVNKAAVMVHQLSKKEA-SRHAIMR-----SP---QMVSAIVRTMQNTNDVETARC   76 (644)
T ss_dssp             ---CTTTHHHHHHHHT-CS--CHHHHHHHHHHHHHHHTSTT-HHHHHTT-----CH---HHHHHHHHHHHSCCCHHHHHH
T ss_pred             hhhhhchHHHHHHHHc-CC--CHHHHHHHHHHHHHHHCCCh-hHHHHHh-----cc---ChHHHHHHHHhcCCCHHHHHH
Confidence            3467788888888776 32  67999999999999998775 3322211     11   133344444434456777778


Q ss_pred             HHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHH
Q 006200          138 ADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQC  217 (657)
Q Consensus       138 A~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~  217 (657)
                      |+.+|.. +..+++.+..+...                   .....|+.-|-+    .++.....|+.+|.++..+++..
T Consensus        77 A~~~L~~-Ls~~~~~~~~i~~~-------------------g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           77 TAGTLHN-LSHHREGLLAIFKS-------------------GGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHH-HTTSHHHHHHHHTT-------------------THHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHH-HhcChhhHHHHHHc-------------------CCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchh
Confidence            8888885 55556666544421                   122335554423    24566677888999998877665


Q ss_pred             HHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHH
Q 006200          218 KERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYL  297 (657)
Q Consensus       218 Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L  297 (657)
                      +..+..-             ..+..+..++.      ..+     ...+...+..|..|..+++.....+...+ .++.|
T Consensus       133 ~~~v~~~-------------g~i~~Lv~lL~------~~~-----~~~~~~a~~~L~~La~~~~~~~~~i~~~g-~v~~L  187 (644)
T 2z6h_A          133 KMAVRLA-------------GGLQKMVALLN------KTN-----VKFLAITTDCLQILAYGNQESKLIILASG-GPQAL  187 (644)
T ss_dssp             HHHHHHT-------------THHHHHHHGGG------CCC-----HHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHC-------------CChHHHHHHHC------cCC-----HHHHHHHHHHHHHHHhcCcHHHHHHHHcC-ChHHH
Confidence            5543211             13444444432      111     12333446677888888888888888776 69999


Q ss_pred             HHHhhCCC
Q 006200          298 LELVSNPS  305 (657)
Q Consensus       298 ~~~i~~~~  305 (657)
                      +..+.+.+
T Consensus       188 v~lL~~~~  195 (644)
T 2z6h_A          188 VNIMRTYT  195 (644)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHcCC
Confidence            99886554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=81.01  E-value=8.1  Score=40.64  Aligned_cols=87  Identities=14%  Similarity=0.239  Sum_probs=67.1

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+...+.++|.+..|+.+.- +.  ...++..|..+++.+-.|++.++..+...-+      .|.+..    +|...+..
T Consensus       254 ~~~~~i~~~g~i~~Lv~lL~-~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~------i~~Lv~----LL~s~~~~  320 (354)
T 3nmw_A          254 DHRQILRENNCLQTLLQHLK-SH--SLTIVSNACGTLWNLSARNPKDQEALWDMGA------VSMLKN----LIHSKHKM  320 (354)
T ss_dssp             HHHHHHHTTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH------HHHHHT----TTTCSSHH
T ss_pred             HHHHHHHHcCCHHHHHHHHc-CC--ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC------HHHHHH----HHhCCCHH
Confidence            67888999999999999877 32  6789999999999999899988888755422      333333    34556666


Q ss_pred             HHhHHHHHHHHhhcCChhhH
Q 006200          134 EFLAADRIFNSFCEKNPDGQ  153 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q  153 (657)
                      .+..|+..+...+.+++.-+
T Consensus       321 i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          321 IAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHHcCCHHHH
Confidence            77788888888888887755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	657
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.43
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.62
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.03
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	92.96
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	91.89
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	88.58
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	87.05
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	85.25

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.012  Score=56.26  Aligned_cols=203  Identities=16%  Similarity=0.139  Sum_probs=136.7

Q ss_pred             HHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhc
Q 006200           27 LLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLAS  106 (657)
Q Consensus        27 ~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~  106 (657)
                      ...+|+.++-|+..            ..|-..|.+.|-+..++.....+  ....||..|+.+++.+..+|+.+|..+..
T Consensus        34 ~~~Al~~L~~L~~~------------~d~a~~l~~~gg~~~ll~~ll~s--~~~~vr~~A~~~L~~l~~~~~~~~~~~~~   99 (264)
T d1xqra1          34 REGALELLADLCEN------------MDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQNVAAIQEQVLG   99 (264)
T ss_dssp             HHHHHHHHHHHHTS------------HHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC------------HHHHHHHHHcCCHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777888753            14677889999999998877744  36899999999999999999999998876


Q ss_pred             cccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHH-hhhcCCCCCCCCCCCcccccCChhHHHh
Q 006200          107 KVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLT-STLIPQPQSMSHAPLEEDVNMSFGSMLI  185 (657)
Q Consensus       107 ~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~-~tl~p~~~~~~~~~~~~~~~~s~g~~Ll  185 (657)
                      ..+      .|.+..+|   -+..+...+..|++++.+.+.+|+..+..+. ...                    ...|.
T Consensus       100 ~~~------i~~Lv~lL---~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~g--------------------i~~L~  150 (264)
T d1xqra1         100 LGA------LRKLLRLL---DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG--------------------FSVLM  150 (264)
T ss_dssp             TTH------HHHHHHHH---HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH--------------------HHHHH
T ss_pred             cCc------hHHHHHHh---hcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhh--------------------hhHHH
Confidence            532      34444333   2345567788999999999999999885443 222                    23455


Q ss_pred             hhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhH
Q 006200          186 RGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYI  265 (657)
Q Consensus       186 ~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~  265 (657)
                      ..|-+.    ++.....|+.++.+++..++..+..+..-.             +++.+..++.      +.|.     -+
T Consensus       151 ~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-------------~v~~L~~lL~------~~~~-----~~  202 (264)
T d1xqra1         151 RAMQQQ----VQKLKVKSAFLLQNLLVGHPEHKGTLCSMG-------------MVQQLVALVR------TEHS-----PF  202 (264)
T ss_dssp             HHHHSS----CHHHHHHHHHHHHHHHHHCGGGHHHHHHTT-------------HHHHHHHHHT------SCCS-----TH
T ss_pred             HHHhcC----chHHHHHHHHHHHHHHhccHHHHHHHHHhh-------------hHHHHHHHHc------CCCH-----HH
Confidence            555332    333445588899999999988887664321             4555555542      1121     13


Q ss_pred             HHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHH
Q 006200          266 QLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLEL  300 (657)
Q Consensus       266 ~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~  300 (657)
                      |-.-+..|..-..++|..++.+....-.+..++..
T Consensus       203 ~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~  237 (264)
T d1xqra1         203 HEHVLGALCSLVTDFPQGVRECREPELGLEELLRH  237 (264)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHH
Confidence            33345555566688999999998766444444443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.17  Score=47.80  Aligned_cols=135  Identities=16%  Similarity=0.084  Sum_probs=95.0

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .+|..++..|++..|+.+.-.  ..+..+|..|+.+++.++++++.++..|.....      .|+   |+. ++...+..
T Consensus        92 ~~~~~~~~~~~i~~Lv~lL~~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~g------i~~---L~~-lL~~~~~~  159 (264)
T d1xqra1          92 AIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDG------FSV---LMR-AMQQQVQK  159 (264)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH------HHH---HHH-HHHSSCHH
T ss_pred             HHHHHHHHcCchHHHHHHhhc--CCCHHHHHHHHHHHHHHhccchhhHHHHHHhhh------hhH---HHH-HHhcCchH
Confidence            789999999999999997762  246789999999999999999999998865422      233   333 33455666


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200          134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD  213 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d  213 (657)
                      .+..++.++..++.++++.+..+...                   .....|+.-|.+.++    ...=.|+..|..+..+
T Consensus       160 ~~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~v~~L~~lL~~~~~----~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         160 LKVKSAFLLQNLLVGHPEHKGTLCSM-------------------GMVQQLVALVRTEHS----PFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHT-------------------THHHHHHHHHTSCCS----THHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHh-------------------hhHHHHHHHHcCCCH----HHHHHHHHHHHHHHhc
Confidence            67778899999999998888655431                   112335554433332    2223366688889999


Q ss_pred             CHHHHHHHhc
Q 006200          214 NLQCKERVLR  223 (657)
Q Consensus       214 n~~~Ke~al~  223 (657)
                      +++....+..
T Consensus       217 ~~~~~~~~~~  226 (264)
T d1xqra1         217 FPQGVRECRE  226 (264)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHHH
Confidence            9888766553

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.03  E-value=1.8  Score=42.23  Aligned_cols=233  Identities=13%  Similarity=0.082  Sum_probs=131.4

Q ss_pred             HHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhH
Q 006200           58 VLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLA  137 (657)
Q Consensus        58 ~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~A  137 (657)
                      .....+++..+..+.- +  -...++..|+.+++.+..++......+..-.      ..|.+..    ++...+...+.+
T Consensus       183 ~~~~~~~l~~l~~ll~-~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~------~~~~Lv~----ll~~~~~~~~~~  249 (434)
T d1q1sc_         183 LDAVEQILPTLVRLLH-H--NDPEVLADSCWAISYLTDGPNERIEMVVKKG------VVPQLVK----LLGATELPIVTP  249 (434)
T ss_dssp             HHHHHHHHHHHHHHTT-C--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT------CHHHHHH----HHTCSCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHh-c--cccchhhhHHhhhcccchhhhhhHHHHhhcc------cchhccc----ccccchhhhhhc
Confidence            3455667777777655 3  3678999999999999988766555543221      1333333    345666777889


Q ss_pred             HHHHHHHhhcCChhhHHHHHh-hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHH
Q 006200          138 ADRIFNSFCEKNPDGQAMLTS-TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQ  216 (657)
Q Consensus       138 A~~cf~ayl~~N~~~q~~L~~-tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~  216 (657)
                      |+.++..++.+++..+..+.. .+                    ...|..-|.+    .++.....|+.+|.++...++.
T Consensus       250 al~~l~~l~~~~~~~~~~~~~~~~--------------------~~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~  305 (434)
T d1q1sc_         250 ALRAIGNIVTGTDEQTQKVIDAGA--------------------LAVFPSLLTN----PKTNIQKEATWTMSNITAGRQD  305 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTG--------------------GGGHHHHTTC----SSHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhhhhhHHhhhhHHHHHHHhccc--------------------cchHHHhhcc----cchhhhHHHHHHHhhhccccch
Confidence            999999999999887754442 22                    1223333322    2344455678889999988888


Q ss_pred             HHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHH-hhcChHHHHHhhcCCChHH
Q 006200          217 CKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTW-LADCPNAVHCFLDSRPHLT  295 (657)
Q Consensus       217 ~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~W-L~e~p~AV~~FL~~~s~l~  295 (657)
                      .+..+.+-.             +++.+..++..    .  +     ...|..-+..|+.- .+.++..+..++..+ -++
T Consensus       306 ~~~~i~~~~-------------~i~~li~~l~~----~--~-----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~-~i~  360 (434)
T d1q1sc_         306 QIQQVVNHG-------------LVPFLVGVLSK----A--D-----FKTQKEAAWAITNYTSGGTVEQIVYLVHCG-IIE  360 (434)
T ss_dssp             HHHHHHHTT-------------CHHHHHHHHHS----S--C-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHTT-CHH
T ss_pred             hHHHHhhhh-------------hHHHHHHHHhc----c--C-----hHHHHHHHHHHHHHHhcCCHHHHHHHHHCC-cHH
Confidence            877654321             45555555431    1  1     11222222222222 345677777777766 689


Q ss_pred             HHHHHhhCCCCchHhHHHHHHHhhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhccc
Q 006200          296 YLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSF  361 (657)
Q Consensus       296 ~L~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~  361 (657)
                      .|++.+...+.++... .+..|.-+|-..+..    .....+...+. +.|   +..+|..|..|+
T Consensus       361 ~L~~ll~~~d~~~~~~-~l~~l~~ll~~~~~~----~~~~~~~~~~~-~~~---~~~~i~~L~~~~  417 (434)
T d1q1sc_         361 PLMNLLSAKDTKIIQV-ILDAISNIFQAAEKL----GETEKLSIMIE-ECG---GLDKIEALQRHE  417 (434)
T ss_dssp             HHHHHTTSSCHHHHHH-HHHHHHHHHHHHHTT----TCHHHHHHHHH-HTT---SHHHHHHHHTCS
T ss_pred             HHHHHhcCCCHHHHHH-HHHHHHHHHHHHHhc----CCcHHHHHHHH-HcC---CHHHHHHHHcCC
Confidence            9999886544433333 223333333222221    12333444444 332   345677776664

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.96  E-value=5.2  Score=40.07  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             hHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhH
Q 006200           55 NKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQE  134 (657)
Q Consensus        55 nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~  134 (657)
                      .-..++++|++..|+.+.- + .-+..|+..|+.+++.+..|++.....+....+      .|.+..+    |..++...
T Consensus       111 ~i~~ii~~g~i~~Lv~~l~-~-~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~------i~~l~~l----L~s~~~~i  178 (503)
T d1wa5b_         111 PIDVVIQAGVVPRLVEFMR-E-NQPEMLQLEAAWALTNIASGTSAQTKVVVDADA------VPLFIQL----LYTGSVEV  178 (503)
T ss_dssp             SHHHHHHTTCHHHHHHTTS-T-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC------HHHHHHH----HHHCCHHH
T ss_pred             hHHHHHHCCChHHHHHHHc-C-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCC------hHHHHHH----hcCCChhH
Confidence            3467899999999988754 2 347889999999999999988766655543322      3333333    34455666


Q ss_pred             HhHHHHHHHHhhcCChhhHHHH
Q 006200          135 FLAADRIFNSFCEKNPDGQAML  156 (657)
Q Consensus       135 r~AA~~cf~ayl~~N~~~q~~L  156 (657)
                      +..|++|+......+++.+..+
T Consensus       179 ~~~a~~~L~nia~~~~~~r~~l  200 (503)
T d1wa5b_         179 KEQAIWALGNVAGDSTDYRDYV  200 (503)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHH
Confidence            7777888887777787777444

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=5.9  Score=38.20  Aligned_cols=86  Identities=5%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             HHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHh
Q 006200           57 TVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFL  136 (657)
Q Consensus        57 ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~  136 (657)
                      ..+.++|++..|+++.-.+  -...|+..|+.+++.+..+++.....+....         ++..|+ .+|...+...+.
T Consensus        50 ~~i~~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~---------~i~~l~-~~L~~~~~~~~~  117 (434)
T d1q1sc_          50 DNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGG---------AIPAFI-SLLASPHAHISE  117 (434)
T ss_dssp             HHHHHTTCHHHHHHHTTCG--GGHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---------HHHHHH-HHTTCSCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHhcCChhhhhHhhhcc---------chhhhh-hccccCCHHHHH
Confidence            5688999999999987633  2567999999999999988877666654321         222233 335566667777


Q ss_pred             HHHHHHHHhhcCChhhHH
Q 006200          137 AADRIFNSFCEKNPDGQA  154 (657)
Q Consensus       137 AA~~cf~ayl~~N~~~q~  154 (657)
                      .|+.+|...++++++.+.
T Consensus       118 ~a~~~L~nl~~~~~~~~~  135 (434)
T d1q1sc_         118 QAVWALGNIAGDGSAFRD  135 (434)
T ss_dssp             HHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhccchHHHH
Confidence            788888888888887764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.58  E-value=2.8  Score=39.72  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200           54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ  133 (657)
Q Consensus        54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~  133 (657)
                      .|+..+.+.|.+..|+++.= ++  ...||..|+.+++.+..+|+.+|..+.+..+         +..|+..+.+..+..
T Consensus        35 ~~~~~i~~~g~i~~Lv~lL~-~~--~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~---------v~~li~~l~~~~~~~  102 (457)
T d1xm9a1          35 SAKQQVYQLGGICKLVDLLR-SP--NQNVQQAAAGALRNLVFRSTTNKLETRRQNG---------IREAVSLLRRTGNAE  102 (457)
T ss_dssp             SHHHHHHHTTHHHHHHHHTT-SS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC---------HHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHCCcHHHHHHHHC-CC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---------hHHHHHHHhccCcHH
Confidence            69999999999999999854 43  7889999999999999999999998876533         223444454556667


Q ss_pred             HHhHHHHHHHHhhcCChhhHHHH
Q 006200          134 EFLAADRIFNSFCEKNPDGQAML  156 (657)
Q Consensus       134 ~r~AA~~cf~ayl~~N~~~q~~L  156 (657)
                      .+..|+.++..+.........+.
T Consensus       103 ~~~~a~~~l~~l~~~~~~~~~~~  125 (457)
T d1xm9a1         103 IQKQLTGLLWNLSSTDELKEELI  125 (457)
T ss_dssp             HHHHHHHHHHHHHTSSSTHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHH
Confidence            77788888887776554433333

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=87.05  E-value=6.6  Score=32.19  Aligned_cols=55  Identities=11%  Similarity=0.130  Sum_probs=32.8

Q ss_pred             HHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200          414 VDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL  486 (657)
Q Consensus       414 v~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l  486 (657)
                      ++|+++|...|++++..  +.++.                +-+-+-.|-...++-..++++|+++-..++.++
T Consensus         4 ik~ir~n~e~v~~~l~~--R~~~~----------------~ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i   58 (110)
T d1seta1           4 LKRLRQEPEVFHRAIRE--KGVAL----------------DLEALLALDREVQELKKRLQEVQTERNQVAKRV   58 (110)
T ss_dssp             HHHHHHCHHHHHHHHHH--TTCCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHhCHHHHHHHHHH--cCCcc----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999988852  33322                112233344555556666667777766666654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.25  E-value=19  Score=35.54  Aligned_cols=195  Identities=15%  Similarity=0.092  Sum_probs=114.9

Q ss_pred             HhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHH
Q 006200           60 VQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAAD  139 (657)
Q Consensus        60 ~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~  139 (657)
                      .-.|++..|+.+.. +  -...++..|+.+++.++.++......+....+      .|.   |+ .++...+...+..|+
T Consensus       243 ~~~~~l~~l~~~l~-~--~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~------~~~---l~-~ll~~~~~~v~~~al  309 (503)
T d1wa5b_         243 VVSQALPTLAKLIY-S--MDTETLVDACWAISYLSDGPQEAIQAVIDVRI------PKR---LV-ELLSHESTLVQTPAL  309 (503)
T ss_dssp             HHGGGHHHHHHHTT-C--CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC------HHH---HH-HGGGCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-c--ccHHHHHHHHHHHHhhccCCchhhhhhhhhhh------hhh---hh-hcccCCchhhhhhHH
Confidence            34578888888776 3  36789999999999999888766555544322      222   22 334556677778889


Q ss_pred             HHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 006200          140 RIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKE  219 (657)
Q Consensus       140 ~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke  219 (657)
                      .++..+..+++.....+..                   ..+...|..-+ ..+   ++...-.++.++.++...++....
T Consensus       310 ~~l~nl~~~~~~~~~~~~~-------------------~~~l~~l~~ll-~~~---~~~i~~~~~~~l~nl~~~~~~~~~  366 (503)
T d1wa5b_         310 RAVGNIVTGNDLQTQVVIN-------------------AGVLPALRLLL-SSP---KENIKKEACWTISNITAGNTEQIQ  366 (503)
T ss_dssp             HHHHHHTTSCHHHHHHHHH-------------------TTHHHHHHHHT-TCS---CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhc-------------------cchHHHHHHHh-cCC---CHHHHHHHHHHHHHHhhccHHHHH
Confidence            9999988888765544432                   11223333322 221   222223467788999999988877


Q ss_pred             HHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhc---ChHHHHHhhcCCChHHH
Q 006200          220 RVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLAD---CPNAVHCFLDSRPHLTY  296 (657)
Q Consensus       220 ~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e---~p~AV~~FL~~~s~l~~  296 (657)
                      .+..-.             +++.+..++.-..           ..++......|+.....   ++..+..+...+ -++.
T Consensus       367 ~i~~~~-------------~l~~li~~l~~~~-----------~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~-~l~~  421 (503)
T d1wa5b_         367 AVIDAN-------------LIPPLVKLLEVAE-----------YKTKKEACWAISNASSGGLQRPDIIRYLVSQG-CIKP  421 (503)
T ss_dssp             HHHHTT-------------CHHHHHHHHHHSC-----------HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT-CHHH
T ss_pred             HHHHcc-------------ccchhHHhcccCC-----------hhHHHHHHHHHHHHHhcccccHHHHHHHHHCC-cHHH
Confidence            654211             5666666664111           11223234444444443   345555555655 6888


Q ss_pred             HHHHhhCCCCchHhHHHHH
Q 006200          297 LLELVSNPSATVCTRGLAA  315 (657)
Q Consensus       297 L~~~i~~~~~~~lVqGL~A  315 (657)
                      |++.+...+.+.+..+|.+
T Consensus       422 l~~~L~~~d~~~~~~~L~~  440 (503)
T d1wa5b_         422 LCDLLEIADNRIIEVTLDA  440 (503)
T ss_dssp             HHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHH
Confidence            9988865555544444433