Citrus Sinensis ID: 006205

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
MKAMAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDTDGSSHSSVSRRGSINQGPNEFIDKDEKLDSRSRAQLTRFSSMESFKQSEGRSKRNKKLEFNSSRVSPIPNGSSQWGALNISKSFNPMFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRAQVFAFI
ccccccccEEEccccccEEEEcccccccccccccEEEEcccccccccccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEccccccccEEEEEEcccEEEEEEccccEEEEcccccccccccccccccEEEEEEEEcccccccEEEEEccccccEEEEccccEEEEEccccccccccccccccccEEEccccccEEEEEEcccccEEEEEEEEcccccccccccccEEEEcccccccccccccccEEEcEEccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccccEEEEccccEEEEEccccccEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccEEEEEEEEEEEcccccccEEcccccEEEEEcccccccEcccccccccccccccccccccEHHHHccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEEccccccccccccccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEHHHccccEEEEEEEccccEEEEEEEEcccccccccccccccccHHccccEEEEEEEcccEEEEEcccccEEEccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHc
MKAMAMDAFRVSLSSavssssqgsghddgdalGDVFiwgegtgdgvlggglnrvgscfgvkmdsslpkALESAVVLDVQNIACGGRHAALVNKqgevfswgeesggrlghgvdsdvlhpKLIDALSNMNIELVAcgeyhtcavtlsgdlytwgdgtynfgllghgnevshwvpkrvngplegihvssiscgpwhtavvtsagqlftfgdgtfgvlghgdrksvsipREVESLKGLRTVRAACGVWHTAAVVEVMVGnssssncssgklftwgdgdkgrlghgdkeaklVPTCVAalvepnfcrvaCGHSLTVALTTsghvytmgspvygqlgnpqadgklpnrvegklSKSFVEEIACGSYHVAVLtsktevytwgkgangrlghgdtddrnspSLVEALKDKQVKSIACGTNFTAAICLHKwvsgvdqsmcsgcrlpfnnfkrkrhncyncglvfchscsskkslkasmapnpnkpyrvcdnCFNKLRktfdtdgsshssvsrrgsinqgpnefidkdekldsRSRAQLTrfssmesfkqsegrskrnkklefnssrvspipngssqwgalnisksfnpmfgsskkffsasvpgsrivsratspisrrpspprsttptptlggltspkivvddakrtnDSLSQEVIKLRAQVFAFI
MKAMAMDAFRVSLSSAVSsssqgsghdDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVgnssssncssgklfTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGangrlghgdtddRNSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKasmapnpnkpyrVCDNCFNKLRKTfdtdgsshssvsrrgsinqgpnefidkdekldsRSRAQltrfssmesfkqsegrskrnkklefnssrvspipngssqwGALNISKSFNPMFGSSKKFFsasvpgsrivsratspisrrpspprsttptptlggltspkivvdDAKRTNDSLSQEVIKLRAQVFAFI
MKAMAMDAFRVslssavssssqgsghddgdALGDVFIWgegtgdgvlggglnrvgSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGnssssncssGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDTDgsshssvsrrgsINQGPNEFIDKDEKLDSRSRAQLTRFSSMESFKQSEGRSKRNKKLEFNSSRVSPIPNGSSQWGALNISKSFNPMFGSSKKFFSASVPGSRIVsratspisrrpspprsttptptlggltspKIVVDDAKRTNDSLSQEVIKLRAQVFAFI
******************************ALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVM**************FTWGD*****LGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLG**************KLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANG********************DKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSC*****************YRVCDNCFNKLR*************************************************************************************************************************************************************IKLRAQVF***
******D***VSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK*************************************************************************************************************************************************************EVIKLRAQVFAFI
***************************DGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTF***************INQGPNEFIDKDEKLDSRSRAQLTRFS*****************LEFNSSRVSPIPNGSSQWGALNISKSFNPMFGSSKKFFSASVPGSRIVSRA*****************PTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRAQVFAFI
****AMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD*************************************************EG***************************************************************************************VDDAKRTNDSLSQEVIKLRAQVFAFI
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SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKAMAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDTDGSSHSSVSRRGSINQGPNEFIDKDEKLDSRSRAQLTRFSSMESFKQSEGRSKRNKKLEFNSSRVSPIPNGSSQWGALNISKSFNPMFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVxxxxxxxxxxxxxxxxxxxxxVFAFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query657 2.2.26 [Sep-21-2011]
Q15751 4861 Probable E3 ubiquitin-pro yes no 0.540 0.073 0.352 2e-51
Q9FN03440 Ultraviolet-B receptor UV no no 0.538 0.804 0.349 2e-48
O95714 4834 E3 ubiquitin-protein liga no no 0.546 0.074 0.333 1e-47
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.546 0.074 0.335 2e-47
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.550 0.073 0.338 1e-42
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.512 0.318 0.322 1e-39
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.462 0.287 0.330 3e-39
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.479 0.298 0.322 1e-38
Q15034 1050 Probable E3 ubiquitin-pro no no 0.462 0.289 0.339 6e-38
F2Z461 1003 E3 ISG15--protein ligase no no 0.490 0.321 0.297 9e-33
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  204 bits (519), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 205/389 (52%), Gaps = 34/389 (8%)

Query: 34   DVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNK 93
            DV++WG G    +   G N       V + ++ P   ++      Q + CG     ++  
Sbjct: 3998 DVYLWGAGRHGQLAEAGRN-------VMVPAAAPSFSQA------QQVICGQNCTFVIQA 4044

Query: 94   QGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNI-ELV-ACG-EYHTCAVTLSGDLY 150
             G V + GE S GRLG G   D+    +I AL    + +LV +CG + H+ A+T SG+++
Sbjct: 4045 NGTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVF 4104

Query: 151  TWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDG 210
            +WGDG Y  G LGHGN      P+++   L+G  V  +SCG  H+AVVTS G+LFTFG+G
Sbjct: 4105 SWGDGDY--GKLGHGNSDRQRRPRQIEA-LQGEEVVQMSCGFKHSAVVTSDGKLFTFGNG 4161

Query: 211  TFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFT 270
             +G LG G+  +  +P  V +L+G +  + ACG+ HT AV           +     ++ 
Sbjct: 4162 DYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAV-----------SADGSMVWA 4210

Query: 271  WGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQ 330
            +GDGD G+LG G+  AK  P  +  L      +VACG   +VALT  GHVYT G      
Sbjct: 4211 FGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRL-- 4268

Query: 331  LGNPQADGKLPNRVEG--KLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDT 388
            +G P+   +  NR +    L+   +E++A G+ H   L S  +VY WG  + G+LG G T
Sbjct: 4269 IGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLGHT 4328

Query: 389  DDRNSPSLVEALKDKQVKSIACGTNFTAA 417
            +    P+LV  L+ K V+ I+ G   +AA
Sbjct: 4329 NHVREPTLVTGLQGKNVRQISAGRCHSAA 4357
Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
359479203 1107 PREDICTED: uncharacterized protein LOC10 0.989 0.587 0.915 0.0
255572207 1100 Ran GTPase binding protein, putative [Ri 0.992 0.592 0.940 0.0
224105957 1104 predicted protein [Populus trichocarpa] 0.992 0.590 0.923 0.0
224055315 1109 predicted protein [Populus trichocarpa] 0.992 0.587 0.918 0.0
356554129 1106 PREDICTED: uncharacterized protein LOC10 0.990 0.588 0.911 0.0
356501403 1109 PREDICTED: uncharacterized protein LOC10 0.992 0.587 0.911 0.0
449444879 1104 PREDICTED: uncharacterized protein LOC10 0.989 0.588 0.887 0.0
357493985 1124 Lateral signaling target protein-like pr 0.990 0.579 0.909 0.0
356526924 1099 PREDICTED: uncharacterized protein LOC10 0.992 0.593 0.879 0.0
356567509 1106 PREDICTED: uncharacterized protein LOC10 0.990 0.588 0.887 0.0
>gi|359479203|ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248282 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1187 bits (3070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/654 (91%), Positives = 617/654 (94%), Gaps = 4/654 (0%)

Query: 1   MKAMAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGV 60
           MKAM MDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGG +RVGSCFG+
Sbjct: 237 MKAMTMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGSHRVGSCFGM 296

Query: 61  KMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPK 120
           KMDS LPKALESAVVLDVQNIACGGRHAALV KQGE+FSWGEESGGRLGHGVDSDVLHPK
Sbjct: 297 KMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPK 356

Query: 121 LIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPL 180
           LID+LSN NIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPL
Sbjct: 357 LIDSLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPL 416

Query: 181 EGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRA 240
           EGIHVSSISCGPWHTAVVTS+GQLFTFGDGTFGVLGHGD KSVS PREVESLKG RTV +
Sbjct: 417 EGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDTKSVSKPREVESLKGHRTVIS 476

Query: 241 ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPN 300
           ACGVWHTAAVVE+MVGN SSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV+PN
Sbjct: 477 ACGVWHTAAVVEIMVGNPSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVDPN 536

Query: 301 FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGS 360
           FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLP RVEGKL+KSFVEEIACG+
Sbjct: 537 FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTRVEGKLAKSFVEEIACGA 596

Query: 361 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 420
           YHVAVLTS+TEVYTWGKGANGRLGHGDTDDRNSP+LVEALKDKQVKSIACGTNFTA ICL
Sbjct: 597 YHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTATICL 656

Query: 421 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV 480
           HKWVSGVDQSMCSGCRLPF NFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV
Sbjct: 657 HKWVSGVDQSMCSGCRLPF-NFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV 715

Query: 481 CDNCFNKLRKTFDTDGSSHSSVSRRGSINQGPNEFIDKDEKLDSRSRAQLTRFSSMESFK 540
           CDNCF+KLRK  +TD SS S+VSRRG  NQG NE IDKDEKLDSRSR QL RFSSMES K
Sbjct: 716 CDNCFSKLRKAIETDASSQSAVSRRGVTNQGLNELIDKDEKLDSRSRVQLARFSSMESLK 775

Query: 541 QSEGR-SKRNKKLEFNSSRVSPIPNGSSQWGALNISKSFNPMFGSSKKFFSASVPGSRIV 599
           Q+E R SKRNKKLEFNSSRVSPIPNG SQWG     KS NP+FGSSKKFFSASVPGSRIV
Sbjct: 776 QAESRTSKRNKKLEFNSSRVSPIPNGGSQWGG--ALKSLNPVFGSSKKFFSASVPGSRIV 833

Query: 600 SRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRAQV 653
           SR TSPISRRPSPPR+ TPTPTL GLTSPKIVVDDAKRTNDSLSQEVIKLR QV
Sbjct: 834 SRTTSPISRRPSPPRAATPTPTLEGLTSPKIVVDDAKRTNDSLSQEVIKLRVQV 887

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572207|ref|XP_002527043.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223533605|gb|EEF35343.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224105957|ref|XP_002313993.1| predicted protein [Populus trichocarpa] gi|222850401|gb|EEE87948.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224055315|ref|XP_002298476.1| predicted protein [Populus trichocarpa] gi|222845734|gb|EEE83281.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554129|ref|XP_003545401.1| PREDICTED: uncharacterized protein LOC100802464 [Glycine max] Back     alignment and taxonomy information
>gi|356501403|ref|XP_003519514.1| PREDICTED: uncharacterized protein LOC100806439 [Glycine max] Back     alignment and taxonomy information
>gi|449444879|ref|XP_004140201.1| PREDICTED: uncharacterized protein LOC101207486 [Cucumis sativus] gi|449480975|ref|XP_004156044.1| PREDICTED: uncharacterized LOC101207486 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357493985|ref|XP_003617281.1| Lateral signaling target protein-like protein [Medicago truncatula] gi|355518616|gb|AET00240.1| Lateral signaling target protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356526924|ref|XP_003532065.1| PREDICTED: uncharacterized protein LOC100797527 [Glycine max] Back     alignment and taxonomy information
>gi|356567509|ref|XP_003551961.1| PREDICTED: uncharacterized protein LOC100791947 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
TAIR|locus:505006603 1075 AT5G12350 "AT5G12350" [Arabido 0.987 0.603 0.730 2.1e-260
TAIR|locus:2165770 1073 AT5G42140 "AT5G42140" [Arabido 0.844 0.517 0.596 7.3e-189
TAIR|locus:2025277 1103 PRAF1 "AT1G76950" [Arabidopsis 0.971 0.578 0.525 1.5e-184
TAIR|locus:2086253 1045 AT3G23270 "AT3G23270" [Arabido 0.726 0.456 0.600 2.3e-172
TAIR|locus:2079147954 AT3G47660 "AT3G47660" [Arabido 0.799 0.550 0.531 2.1e-154
TAIR|locus:2009739 1006 AT1G65920 [Arabidopsis thalian 0.637 0.416 0.553 4.2e-127
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.493 0.066 0.382 3.7e-51
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.490 0.066 0.379 7e-50
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.490 0.066 0.382 8.9e-50
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.490 0.066 0.382 8.9e-50
TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2506 (887.2 bits), Expect = 2.1e-260, P = 2.1e-260
 Identities = 477/653 (73%), Positives = 519/653 (79%)

Query:     1 MKAMAMDAFRVXXXXXXXXXXXXXXXXXXXALGDVFIWXXXXXXXXXXXXXXXXXSCFGV 60
             M+ M MDAFRV                   ALGDVFIW                 S F +
Sbjct:   233 MRGMGMDAFRVSMSSAVSSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNRRVGSSFDI 292

Query:    61 KMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPK 120
             KMDS LPKALES +VLDVQNIACGG+HA LV KQGE FSWGEES GRLGHGVDS++  PK
Sbjct:   293 KMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPK 352

Query:   121 LIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPL 180
             LIDAL+  NIELVACGE+H+CAVTLSGDLYTWG G  +FG+LGHGNEVSHWVPKRVN  L
Sbjct:   353 LIDALNTTNIELVACGEFHSCAVTLSGDLYTWGKG--DFGVLGHGNEVSHWVPKRVNFLL 410

Query:   181 EGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRA 240
             EGIHVSSI+CGP+HTAVVTSAGQLFTFGDGTFGVLGHGD+KSV IPREV+SLKGLRTVRA
Sbjct:   411 EGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRA 470

Query:   241 ACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPN 300
             ACGVWHTAAVVEVMVG         GKLFTWGDGDKGRLGHG+KE KLVPTCVAALVEPN
Sbjct:   471 ACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPN 530

Query:   301 FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGS 360
             FC+VACGHSLTVALTTSGHVYTMGSPVYGQLGN  ADGK PNRVEGKL KSFVEEIACG+
Sbjct:   531 FCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNSHADGKTPNRVEGKLHKSFVEEIACGA 590

Query:   361 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 420
             YHVAVLTS+TEVYTWGKG+NGRLGHGD DDRNSP+LVE+LKDKQVKSIACGTNFTAA+C+
Sbjct:   591 YHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESLKDKQVKSIACGTNFTAAVCI 650

Query:   421 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV 480
             H+W SG+DQSMCSGCR PF+ FKRKRHNCYNCGLVFCHSC+SKKSLKA MAPNPNKPYRV
Sbjct:   651 HRWASGMDQSMCSGCRQPFS-FKRKRHNCYNCGLVFCHSCTSKKSLKACMAPNPNKPYRV 709

Query:   481 CDNCFNKLRKTFDTDXXXXXXXXXXXXINQGPNEFIDKDEKLDSRSRAQLTRFSSMESFK 540
             CD CFNKL+KT +TD            INQG +  IDKD+K DSRS  QL RFS MES +
Sbjct:   710 CDKCFNKLKKTMETDPSSHSSLSRRGSINQGSDP-IDKDDKFDSRSDGQLARFSLMESMR 768

Query:   541 QSEGRSKRNKKLEFNSSRVSPIPNGSSQWGALNISKSFNPMFGSSKKFFSASVPGSRIVX 600
             Q + R K+NKK EFNSSRVSPIP+GSSQ GALNI+KSFNP+FG+SKKFFSASVPGSRIV 
Sbjct:   769 QVDSRHKKNKKYEFNSSRVSPIPSGSSQRGALNIAKSFNPVFGASKKFFSASVPGSRIVS 828

Query:   601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRAQV 653
                                         K VVDD KRTND+LSQEV+KLR+QV
Sbjct:   829 RATSPISRRPSPPRSTTPTPTLSGLATPKFVVDDTKRTNDNLSQEVVKLRSQV 881
GO:0003682 "chromatin binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=ISS
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009888 "tissue development" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0010638 "positive regulation of organelle organization" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
GO:0042546 "cell wall biogenesis" evidence=RCA
GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086253 AT3G23270 "AT3G23270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079147 AT3G47660 "AT3G47660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-28
pfam0136368 pfam01363, FYVE, FYVE zinc finger 2e-21
smart0006468 smart00064, FYVE, Protein present in Fab1, YOTB, V 8e-20
cd0006557 cd00065, FYVE, FYVE domain; Zinc-binding domain; t 3e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-11
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 7e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  119 bits (299), Expect = 2e-28
 Identities = 92/413 (22%), Positives = 150/413 (36%), Gaps = 53/413 (12%)

Query: 33  GDVFIWGEGTGDGVLG-GGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALV 91
             V+ WG   G   LG G           K+D              +  IACGG H+  +
Sbjct: 68  ASVYSWGSN-GMNELGLGND-------ETKVDRPQLNPFGRIDKASIIKIACGGNHSLGL 119

Query: 92  NKQGEVFSWGEESGGRLGHGVDSDV-LHPKLIDALSNMNIEL------------------ 132
           +  G ++SWG+   G LG  +  D+      I    +  +E                   
Sbjct: 120 DHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179

Query: 133 -VACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRV--NGPLEGIHVSSIS 189
            +ACG   +  +T  G +Y+WG         G          +      P + I    ++
Sbjct: 180 KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAI--VQLA 237

Query: 190 CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTV-RAACGVWHTA 248
            G  H   +T+ G+++ +G    G LG    + + +   V     +R +   ACG  H+ 
Sbjct: 238 AGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSL 297

Query: 249 AVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLV----PTCVAALVEPNFCRV 304
           A+ E             G+++ WG    G+LG G           P     L     C +
Sbjct: 298 ALDE------------DGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSI 345

Query: 305 ACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVA 364
           + G S ++ L   G +Y  G    GQLG  +      +          +E++ACG++H  
Sbjct: 346 SAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNI 405

Query: 365 VLTSKTEVYTWGKGANGRLGHGDTDDRNS-PSLV--EALKDKQVKSIACGTNF 414
             T    VY+WG G +G LG+G  +     P+L+    L    +     G  F
Sbjct: 406 ARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQF 458

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger Back     alignment and domain information
>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 657
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.87
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.84
PF0136369 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f 99.36
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.24
smart0006468 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 99.22
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.14
KOG1818 634 consensus Membrane trafficking and cell signaling 99.13
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.09
PTZ00303 1374 phosphatidylinositol kinase; Provisional 99.05
KOG1729288 consensus FYVE finger containing protein [General 99.03
KOG1819990 consensus FYVE finger-containing proteins [General 98.97
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 98.87
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 98.84
cd0006557 FYVE FYVE domain; Zinc-binding domain; targets pro 98.83
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.78
KOG1842505 consensus FYVE finger-containing protein [General 98.28
KOG1409404 consensus Uncharacterized conserved protein, conta 98.17
KOG1841 1287 consensus Smad anchor for receptor activation [Def 98.06
KOG1843473 consensus Uncharacterized conserved protein [Funct 97.72
KOG4424623 consensus Predicted Rho/Rac guanine nucleotide exc 96.6
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 94.87
KOG1811 1141 consensus Predicted Zn2+-binding protein, contains 94.76
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 93.77
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 92.43
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 91.33
PLN02153341 epithiospecifier protein 86.25
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 85.44
KOG3669705 consensus Uncharacterized conserved protein, conta 84.8
KOG4693392 consensus Uncharacterized conserved protein, conta 84.24
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 82.6
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 81.9
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4e-48  Score=404.60  Aligned_cols=364  Identities=25%  Similarity=0.485  Sum_probs=293.8

Q ss_pred             cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeeccc--CCCCeEEEEecCCeEEEEEcCCcEEEEeCCC
Q 006205           27 DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESA--VVLDVQNIACGGRHAALVNKQGEVFSWGEES  104 (657)
Q Consensus        27 ~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~  104 (657)
                      .....-++||+||.|. ..+||+|.+.        .....|......  ....|++++||+.|+++|+.||.||+||.|.
T Consensus        62 ~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~  132 (476)
T COG5184          62 HLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND  132 (476)
T ss_pred             hhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence            5678889999999999 9999999843        235667776655  4578999999999999999999999999999


Q ss_pred             CCCcCCCCC----------------CCcccceEecc----CCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCC
Q 006205          105 GGRLGHGVD----------------SDVLHPKLIDA----LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGH  164 (657)
Q Consensus       105 ~GqLG~g~~----------------~~~~~P~~v~~----l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~  164 (657)
                      .|+||....                .....|..|..    ....+|++++||++++++|+++|+||.||.+.  .+.++.
T Consensus       133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r--~~e~~~  210 (476)
T COG5184         133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFR--CGELGQ  210 (476)
T ss_pred             ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcc--cccccc
Confidence            999998761                12456777775    22348999999999999999999999999984  455555


Q ss_pred             C--CCcc----eeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCC-eE
Q 006205          165 G--NEVS----HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGL-RT  237 (657)
Q Consensus       165 ~--~~~~----~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~-~I  237 (657)
                      +  ....    +.+|.++.    ...|+++++|.+|.++|+++|+||+||+|.+||||....+....+..+..+... .|
T Consensus       211 g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i  286 (476)
T COG5184         211 GSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI  286 (476)
T ss_pred             ccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence            5  2222    34555543    457999999999999999999999999999999999877666555555433322 37


Q ss_pred             EEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCC----CceeecEEEeecCCCCeEEEEccCcEEEE
Q 006205          238 VRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK----EAKLVPTCVAALVEPNFCRVACGHSLTVA  313 (657)
Q Consensus       238 ~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~----~~~~~P~~v~~l~~~~i~~I~~G~~~t~a  313 (657)
                      +.|+||.+|++||.            .+|++|+||.|-+||||.+..    .....|+....+.+..|.+|++|..|+++
T Consensus       287 ~~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~  354 (476)
T COG5184         287 KYVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLI  354 (476)
T ss_pred             hhcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEE
Confidence            89999999999998            599999999999999999821    22456666667777789999999999999


Q ss_pred             EecCCcEEEEeCCCCCCCCCCCCCC---CcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCC-
Q 006205          314 LTTSGHVYTMGSPVYGQLGNPQADG---KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTD-  389 (657)
Q Consensus       314 Lt~~G~Vy~wG~n~~GqLG~~~~~~---~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~-  389 (657)
                      |..+|.||.||+++.+|||.+....   ..|..+.   ....+.+|+||..|+++.+.+|+||.||.|++|+||.|+.. 
T Consensus       355 L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~  431 (476)
T COG5184         355 LRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEA  431 (476)
T ss_pred             EecCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhh
Confidence            9999999999999999999987332   1222222   13459999999999999999999999999999999999755 


Q ss_pred             CCcccEEecc--cCCCcEEEEEcCCCceeeeee
Q 006205          390 DRNSPSLVEA--LKDKQVKSIACGTNFTAAICL  420 (657)
Q Consensus       390 ~~~~P~~V~~--l~~~~v~~Ia~G~~hT~al~~  420 (657)
                      +...|+++..  +....++..-||.++.+..-.
T Consensus       432 ~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~  464 (476)
T COG5184         432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET  464 (476)
T ss_pred             hccccccccccccCCCceEEeccCcceEEEecc
Confidence            4667888863  677788888888888776643

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PTZ00303 phosphatidylinositol kinase; Provisional Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1842 consensus FYVE finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-48
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-10
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-48
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-10
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 4e-48
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-10
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-47
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-42
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-18
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-17
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-17
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 3e-05
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 8e-17
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 4e-05
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 2e-10
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 6e-07
1joc_A125 Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I 3e-08
2yqm_A89 Solution Structure Of The Fyve Domain In Zinc Finge 4e-06
1hyi_A65 Solution Structure Of The Eea1 Fyve Domain Complexe 5e-06
2yw8_A82 Crystal Structure Of Human Run And Fyve Domain-Cont 6e-06
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 3e-05
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 5e-05
1z2q_A84 High-Resolution Solution Structure Of The Lm5-1 Fyv 1e-04
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 63  DSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVLHPKL 121
           D   P  L +     + ++ CG  H    ++ G EV+SWG    GRLGHG  SD+  P  
Sbjct: 43  DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 102
Query: 122 IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE 181
           I AL  + I+ +ACG+ H  AVT+ G++ +WG      G LG G+     VP+++    E
Sbjct: 103 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFE 159
Query: 182 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 241
           GI +  ++ G  HTA VT  G L+ +G G +G LG GDR    +P  V S  G +    A
Sbjct: 160 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 242 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 301
           CG  HT +V               G L+T+G    G+LGHGD E  L+P  + AL     
Sbjct: 220 CGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 267
Query: 302 CRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEIACGS 360
            +++ G   T+ALT+ G +Y  G   +GQ+G     D   P +V     +  V+ ++CG 
Sbjct: 268 SQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGW 326
Query: 361 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 400
            H   +T +  V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 327 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 Back     alignment and structure
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 Back     alignment and structure
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 Back     alignment and structure
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-145
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-113
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 9e-18
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-144
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-91
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-129
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-85
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-70
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-62
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-34
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-15
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-126
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-118
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-85
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-13
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-43
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-38
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-32
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-29
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-25
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 5e-30
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 3e-26
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 1e-22
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 7e-20
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 4e-19
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 2e-17
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 2e-17
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 1e-16
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 5e-16
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 4e-14
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 5e-10
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 4e-07
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 1e-06
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 1e-04
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  427 bits (1101), Expect = e-145
 Identities = 135/395 (34%), Positives = 192/395 (48%), Gaps = 31/395 (7%)

Query: 33  GDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVN 92
           G ++ WG     G LGG                +P   E+   L    +  G +    V 
Sbjct: 20  GTIYGWGHNH-RGQLGGI---------EGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69

Query: 93  KQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVA--CGEYHTCAVTLSGDLY 150
             G++++ G  +GGRLG G    V  P L++++ ++ I+ VA   G  H  A++  G++Y
Sbjct: 70  ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVY 129

Query: 151 TWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDG 210
           +WG+     G LGHGN      P+ +   L GI V  ++ G  H+A VT+AG L+T+G G
Sbjct: 130 SWGEAED--GKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186

Query: 211 TFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVW--HTAAVVEVMVGNSSSSNCSSGKL 268
            +G LGH D +    P+ VE+L+G R V  ACG     T  +                 +
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT------------DDDTV 234

Query: 269 FTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVY 328
           ++WGDGD G+LG G  +   VP  + +L      +V CG   +VALT SG VYT G   Y
Sbjct: 235 WSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDY 294

Query: 329 GQLGNPQADGKL-PNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGD 387
            +LG+   D    P +V+G L    V  IA GS H    T   EVYTWG    G+LG G 
Sbjct: 295 HRLGHGSDDHVRRPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 353

Query: 388 TDDRNSPSLVEALKDKQVKSIACGTNFTAAICLHK 422
           T+    P LV AL+ K+V  +ACG+  T A    K
Sbjct: 354 TNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 Back     alignment and structure
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 Back     alignment and structure
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 99.61
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 99.55
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 99.52
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 99.48
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 99.46
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 99.45
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 99.43
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 99.29
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 99.25
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 99.22
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 99.03
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.44
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.95
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 94.51
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 93.82
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 92.98
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 92.92
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.19
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 91.3
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 89.59
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 89.04
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 87.9
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 87.17
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 85.69
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 85.45
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 84.53
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 81.58
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 80.57
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.7e-70  Score=596.39  Aligned_cols=371  Identities=36%  Similarity=0.635  Sum_probs=336.3

Q ss_pred             CccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCC
Q 006205           25 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES  104 (657)
Q Consensus        25 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~  104 (657)
                      .+.+++++|+||+||.|. +||||.++         ..+...|.+++.+...+|++|+||..|+++|+++|+||+||.|.
T Consensus        12 ~~~~l~~~G~v~~wG~n~-~GqLG~~~---------~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~   81 (389)
T 3kci_A           12 ENLYFQGSGTIYGWGHNH-RGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA   81 (389)
T ss_dssp             ---------CEEEEEECT-TSTTSSCS---------CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred             cceeECCCCeEEEeeCCC-CccCCCCc---------CccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCC
Confidence            557899999999999999 99999876         35667899988888889999999999999999999999999999


Q ss_pred             CCCcCCCCCCCcccceEeccCCCCcE--EEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCC
Q 006205          105 GGRLGHGVDSDVLHPKLIDALSNMNI--ELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEG  182 (657)
Q Consensus       105 ~GqLG~g~~~~~~~P~~v~~l~~~~I--~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~  182 (657)
                      +||||.+.......|.++..+.+..+  ++|+||.+|++||+++|+||+||.|  .+||||.+.......|.++.. +.+
T Consensus        82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~  158 (389)
T 3kci_A           82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG  158 (389)
T ss_dssp             GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred             CCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC--CCCcCCCCCCccCcCCeEecc-cCC
Confidence            99999999888899999998876644  7888999999999999999999999  679999999988899999876 567


Q ss_pred             ceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCC--CeeEEEEEeeecCCCc
Q 006205          183 IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV--WHTAAVVEVMVGNSSS  260 (657)
Q Consensus       183 ~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~--~hs~al~e~~~~~s~~  260 (657)
                      .+|++|+||.+|+++|+++|+||+||.|.+||||+++......|++++.+.+.+|++|+||.  .|+++|+         
T Consensus       159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~---------  229 (389)
T 3kci_A          159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT---------  229 (389)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---------
T ss_pred             CeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---------
Confidence            78999999999999999999999999999999999999989999999999999999999995  8999998         


Q ss_pred             cccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-C
Q 006205          261 SNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-K  339 (657)
Q Consensus       261 ~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~-~  339 (657)
                         .+|+||+||.|.+||||.+.......|.++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... .
T Consensus       230 ---~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~  306 (389)
T 3kci_A          230 ---DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR  306 (389)
T ss_dssp             ---TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred             ---cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcccc
Confidence               699999999999999999999999999999998888999999999999999999999999999999999987554 3


Q ss_pred             cceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEecccCCCcEEEEEcCCCceeeee
Q 006205          340 LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAIC  419 (657)
Q Consensus       340 ~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~v~~Ia~G~~hT~al~  419 (657)
                      .|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+|+.+++..|++|+.+.+++|.+|+||.+||+||+
T Consensus       307 ~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~  385 (389)
T 3kci_A          307 RPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS  385 (389)
T ss_dssp             EEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred             CCeEecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEe
Confidence            5777764 667789999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             ee
Q 006205          420 LH  421 (657)
Q Consensus       420 ~~  421 (657)
                      ..
T Consensus       386 ~~  387 (389)
T 3kci_A          386 TS  387 (389)
T ss_dssp             C-
T ss_pred             cC
Confidence            54
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Back     alignment and structure
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 657
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-38
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-20
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-19
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-18
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-14
d1joca164 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) 4e-18
d1dvpa272 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me 7e-17
d1vfya_67 g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch 3e-16
d1zbdb_124 g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat 6e-16
d1wfka_88 g.50.1.1 (A:) Zinc finger FYVE domain containing p 6e-16
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 7e-15
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-05
d1y02a251 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro 1e-12
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 7e-38
 Identities = 94/409 (22%), Positives = 158/409 (38%), Gaps = 50/409 (12%)

Query: 33  GDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVN 92
           G V   G+G   G LG G N         M+   P  +      DV     GG H   ++
Sbjct: 15  GLVLTLGQGD-VGQLGLGEN--------VMERKKPALVSIPE--DVVQAEAGGMHTVCLS 63

Query: 93  KQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTW 152
           K G+V+S+G    G LG     +              +  V+ G+ HT A+T  G ++ W
Sbjct: 64  KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123

Query: 153 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTF 212
           G    N G++G    +   +          + V  ++ G  H  ++T+ G L+T G G  
Sbjct: 124 GSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 181

Query: 213 GVLGHGDRKSVS----------------IPREVESLKGLRTVRAACGVWHTAAVVEVMVG 256
           G LG       +                + +   S   +R   A CG + T A+      
Sbjct: 182 GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAI------ 235

Query: 257 NSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVA--CGHSLTVAL 314
                    G ++ +G  +  +LG    E+  +P  + +        V    G   TV +
Sbjct: 236 ------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCM 289

Query: 315 TTSGHVYTMGSPVYGQLGNPQA--DGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEV 372
            + G  Y++G   YG+LG  +   +  +P  +        V  +ACG+     +T    V
Sbjct: 290 DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRV 346

Query: 373 YTWGKGANGRLGHGDTDDRNSPSLV--EALKDKQVKSIACGTNFTAAIC 419
           + WG G N +LG G  +D  SP  +  + L+++ V S++ G   T  + 
Sbjct: 347 FAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 395
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1joca164 Eea1 {Human (Homo sapiens) [TaxId: 9606]} 99.57
d1wfka_88 Zinc finger FYVE domain containing protein 19 {Mou 99.41
d1dvpa272 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 99.4
d1vfya_67 vps27p protein {Baker's yeast (Saccharomyces cerev 99.38
d1y02a251 Rififylin (FYVE-RING finger protein Sakura) {Human 98.94
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 98.24
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.93
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.02
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 86.87
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-58  Score=498.45  Aligned_cols=369  Identities=26%  Similarity=0.431  Sum_probs=311.4

Q ss_pred             CccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCC
Q 006205           25 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES  104 (657)
Q Consensus        25 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~  104 (657)
                      +..+++.+|+||+||.|. +||||+|++.        .+...|.+++.+.  +|++|+||..|+++|+++|+||+||.|.
T Consensus         7 h~~~~~~~G~vy~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~   75 (401)
T d1a12a_           7 HRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCND   75 (401)
T ss_dssp             CTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             EEEEECCCCEEEEEeCCC-CCCCCCCCCC--------ceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCC
Confidence            347899999999999999 9999998632        4567888887654  7999999999999999999999999999


Q ss_pred             CCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCce
Q 006205          105 GGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIH  184 (657)
Q Consensus       105 ~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~  184 (657)
                      +||||++...+...|.+.......+|++|+||..|+++++++|+||+||.+.+..++++.........+....  ....+
T Consensus        76 ~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  153 (401)
T d1a12a_          76 EGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVP  153 (401)
T ss_dssp             TSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSC
T ss_pred             CCCCCcccccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeee--ccCCc
Confidence            9999999888877777777666789999999999999999999999999985555566555544433333222  33568


Q ss_pred             EEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcc-----------cccceeee-----ccCCCeEEEEEeCCCeeE
Q 006205          185 VSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS-----------VSIPREVE-----SLKGLRTVRAACGVWHTA  248 (657)
Q Consensus       185 I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~-----------~~~P~~v~-----~l~~~~I~~Ia~G~~hs~  248 (657)
                      |++|+||..|+++++++|++|+||.|.+||||......           ...|..+.     .....+|.+|+||.+|++
T Consensus       154 i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~  233 (401)
T d1a12a_         154 VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF  233 (401)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEE
T ss_pred             eeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEE
Confidence            99999999999999999999999999999999763321           22344433     233458999999999999


Q ss_pred             EEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCC--CCeEEEEccCcEEEEEecCCcEEEEeCC
Q 006205          249 AVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVE--PNFCRVACGHSLTVALTTSGHVYTMGSP  326 (657)
Q Consensus       249 al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~--~~i~~I~~G~~~t~aLt~~G~Vy~wG~n  326 (657)
                      +|+            .+|++|.||.|.++++|.........+..+..+..  ..++.+++|..|+++|+++|+||+||.|
T Consensus       234 ~l~------------~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n  301 (401)
T d1a12a_         234 AIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRA  301 (401)
T ss_dssp             EEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred             EEe------------cCCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEeccc
Confidence            998            69999999999999999998888888887776544  5699999999999999999999999999


Q ss_pred             CCCCCCCCCCCC--CcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEecc--cCC
Q 006205          327 VYGQLGNPQADG--KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEA--LKD  402 (657)
Q Consensus       327 ~~GqLG~~~~~~--~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V~~--l~~  402 (657)
                      .+||||.+....  ..|..++.   ...|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|..  +++
T Consensus       302 ~~gqlG~g~~~~~~~~P~~i~~---~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~  378 (401)
T d1a12a_         302 EYGRLGLGEGAEEKSIPTLISR---LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLEN  378 (401)
T ss_dssp             GGGTTCSCTTCCCEEEEEECCS---SSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTT
T ss_pred             ccCccCCCcccccccCCEEcCC---CCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCC
Confidence            999999886443  35666653   24699999999999999999999999999999999999999999999864  556


Q ss_pred             CcEEEEEcCCCceeeeeee
Q 006205          403 KQVKSIACGTNFTAAICLH  421 (657)
Q Consensus       403 ~~v~~Ia~G~~hT~al~~~  421 (657)
                      .+|.+|+||.+||++|+.+
T Consensus       379 ~~v~~v~~G~~hs~~l~~d  397 (401)
T d1a12a_         379 RVVLSVSSGGQHTVLLVKD  397 (401)
T ss_dssp             EEEEEEEECSSEEEEEEEE
T ss_pred             CEEEEEEEccceEEEEEEC
Confidence            7899999999999999865
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure