Citrus Sinensis ID: 006207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
Protein Sequence
MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Secondary Structure (PSIPRED)
ccccEEEEccccccHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccccccccEEEEcccccccccccccccccccEEEcccccccEEEccccccccEEEEEEEcccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccEEcccccHHHHHccccccHHccccEEEEEEEEEccEEEEEccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcEEcccEEEEEEEEccccEEEEEEEEccccccccEEEEEEcccccHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHEEccccccccccEEccccccccccccccccccEEEEEccccccEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEccccEEEEEEEEccccccccHHcccccccccccccccccccccHccccccccHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEccHHHHcccccccccccccHccEEEEEEEccEEEEEEcccccccEccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEcccEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEcccccHHcccccccccccHHHHHHcccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mngnleisvdklpvKRLDAIEetgaerfppdvgydekRESLIRRIDFAWAvekddnkrlkksskessssatttpwQWQNMVENLQFAHQELSVIIDLINtveandavtvagmtrpkalpnevlsdlsvsaATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRqrvaapasgnegftidlfdnslydsapvsrpsslstiridhdsagmlainlppnscrsfrfgflgvqsgdsskqcskvknscsprpskeakesvnddecvrEKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLslipsnqgdlsvDSWVNQnvesgilpldshdgvklaeeKDDIlrksggypnpltYEIYLQQVFHEYLygraknkpistgtrvsgpptkdgsgllgHFCLSLAHRIFSNKVHVELenavcgvpylhlvshptwhsrtsswTVFLKVPqsilhaesnsrtaetAKSHfrtnvvvnddcihvegegtpnVVGLFKgrsedmssmnkydcdladlpVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSfeldqgetvslvahvdpedmrgcISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Flexible Loop (DISEMBL)
mngnleisvdklpvKRLDAIeetgaerfppdvgydekresLIRRIdfawavekddnkrlkksskessssatttpwqWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAapasgnegfTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQsgdsskqcskvknscsprpskeakesvnddeCVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESgilpldshdgvKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAesnsrtaetakshfrtnVVVNDdcihvegegtpnvvGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Low Complexity Region (SEG)
MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLkksskessssATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQlgiglgisiflslipsNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Disordered region (IsUnstruct)
**************************************ESLIRRIDFAWAV**********************PWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYD************IRIDHDSAGMLAINLPPNSCRSFRFGFLGV*************************************HSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLA***DDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAK*******************GLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILH************SHFRTNVVVNDDCIHVEGEGTPNVVGLFKG*******MNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCG****
Disordered Region (DISOPRED)
***NLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRID*******************************QNMVENLQFAHQELSVIIDLINTVEANDAV****************************C************************FYGALIRLQQNWKVKRQ*******GNEGFTIDLFDN*****************************NLPPNSCRSFRFGFL**************************************KHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLI*********************LPLDSHDGV*********************YEIYLQQVFH*****************************LGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRT*ETAKSHFRTNVVVNDDCIHVEGEGTPNVV**********SSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGF******************KFLGHLSLDVLYSTLMDLVSLCGG***
Disordered Region (DISEMBL)
MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKD*******************PWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWK*********ASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQ********************************VREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHA**********KSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Disordered Region (DISPRO)
**GNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK************TPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQ***************************NDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPS**********************************DDIL*KSGGYPNPLTYEIYLQQVFHEYLYGRAKN****************GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSR*AETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAE**********ASDYKKFLGHLSLDVLYSTLMDLVSLCGG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	657	2.2.26 [Sep-21-2011]
F4K460	653	Mediator of RNA polymeras	yes	no	0.972	0.978	0.593	0.0

>sp|F4K460|MED17_ARATH Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana GN=MED17 PE=1 SV=1

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/662 (59%), Positives = 497/662 (75%), Gaps = 23/662 (3%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M+ ++EIS+D+LP+KRL++IEE GAERFP DV YD+KR SLIRRIDFAWA+E+     LK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEE--EDELK 58

Query: 61  KSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
           K  ++ SS  +   W+W+ MVENLQ AHQEL+VIIDLI+TV+ANDAVTVAGMTRPK +PN
Sbjct: 59  KKKQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPN 118

Query: 121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
           E+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+NWKVKRQR+ 
Sbjct: 119 EILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRML 178

Query: 181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
           A  + NEGFTIDL D+SLYD     RPS+LSTIR+DHDSAGMLAIN+P +S  S RFG++
Sbjct: 179 ASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYV 238

Query: 241 GVQSGDSSKQCSKVKNSCSPR--PSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDI 298
           G+    +S +  +  +S +    P    K S +DD+ V+E HSLLREVH++IF EQ+FD+
Sbjct: 239 GLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDM 298

Query: 299 VNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILP 358
           +NREAF + +G N++G+REN++++ IG G S+F+SL PS +      S      ES  L 
Sbjct: 299 LNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ESATLL 352

Query: 359 LDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPP 418
           ++S   V+ AE  D  L+K  G+PN  +YEIYLQQ+FHE+ +G+AK++  S   R S   
Sbjct: 353 IESSGRVEPAEGGDYRLKKL-GFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQT 411

Query: 419 TKD-GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKV 477
            KD  SGLL HFCLSL HRIFSN+V V LE+ VC VPYLHL+SHPTW+SRTSSWTVF+ V
Sbjct: 412 EKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTV 471

Query: 478 PQSIL---HAESNSRTAE-TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSM 533
           P SI+    +E+ S   +   K+ FRT VVV DDCI VE E TPNVVGL K  S ++ S+
Sbjct: 472 PPSIIPQGRSETQSPDGKRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSI 531

Query: 534 NKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHV 593
           NKY+CD+ADLPV+ILQQVASQ++ WL EEA  VG KA+R+FLSLS E+ +GE VSLVAHV
Sbjct: 532 NKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHV 591

Query: 594 DPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCG 653
           +PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS LMDL++LCG
Sbjct: 592 NPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLCG 644

Query: 654 GG 655
            G
Sbjct: 645 TG 646

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
225445450	660	PREDICTED: uncharacterized protein LOC10	0.990	0.986	0.699	0.0
224130170	667	predicted protein [Populus trichocarpa]	0.998	0.983	0.702	0.0
356513925	659	PREDICTED: uncharacterized protein LOC10	0.978	0.975	0.650	0.0
449447591	662	PREDICTED: mediator of RNA polymerase II	0.981	0.974	0.651	0.0
356563049	660	PREDICTED: uncharacterized protein LOC10	0.980	0.975	0.642	0.0
357478013	856	hypothetical protein MTR_4g114100 [Medic	0.980	0.752	0.613	0.0
297812205	652	hypothetical protein ARALYDRAFT_351112 [	0.971	0.978	0.598	0.0
145358255	653	RNA polymerase II transcription mediator	0.972	0.978	0.593	0.0
115489788	655	Os12g0638600 [Oryza sativa Japonica Grou	0.974	0.977	0.508	1e-175
222617546	655	hypothetical protein OsJ_37013 [Oryza sa	0.974	0.977	0.505	1e-174

>gi|225445450|ref|XP_002285089.1| PREDICTED: uncharacterized protein LOC100266409 [Vitis vinifera] gi|147821405|emb|CAN63500.1| hypothetical protein VITISV_011675 [Vitis vinifera] gi|297738929|emb|CBI28174.3| unnamed protein product [Vitis vinifera]

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/666 (69%), Positives = 547/666 (82%), Gaps = 15/666 (2%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M+G +EIS+DKLP+KRLDAIEE GAERFP DVGYD+KR SLIRRIDFAWAVEKD  K+ K
Sbjct: 1   MDGKMEISLDKLPIKRLDAIEENGAERFPTDVGYDDKRVSLIRRIDFAWAVEKD-TKKQK 59

Query: 61  KSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
           K+SKE +     TPW WQ++VENL+ AHQELSVIIDLI+TVEANDAVTVA MTRPK LPN
Sbjct: 60  KASKEEA-----TPWPWQSLVENLRLAHQELSVIIDLISTVEANDAVTVASMTRPKPLPN 114

Query: 121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
           EVLSDL VSAATKLQC+RHL  YFKQSAK+LEQQIA+EARFYGALIRLQQNWKVKRQRVA
Sbjct: 115 EVLSDLGVSAATKLQCFRHLSKYFKQSAKALEQQIAREARFYGALIRLQQNWKVKRQRVA 174

Query: 181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
           A A GNEGF+IDLF NSL+D   V RPSSLST+R+DHDSAGMLA++LPPNSCR+  FGFL
Sbjct: 175 ASAPGNEGFSIDLFSNSLHDPVAVFRPSSLSTVRVDHDSAGMLAVHLPPNSCRALHFGFL 234

Query: 241 GVQSGDSSKQCSKVKNSCSPR-PSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIV 299
           G   G+  K+ SK K       PSKE K+ ++D+ECV+E HS+LRE HQAIF EQVFD+V
Sbjct: 235 GGHLGNIPKEPSKTKTYGPDELPSKEIKKPLSDNECVKETHSVLREGHQAIFDEQVFDLV 294

Query: 300 NREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPL 359
           NREAF  S GVNVTGIRENYLQL IG G S+F+SL+PS Q + + D    QN+ES ILP+
Sbjct: 295 NREAFNSSSGVNVTGIRENYLQLNIGQGASVFMSLVPSGQDEKTADGMGMQNLESAILPM 354

Query: 360 DSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTG-TRVSGPP 418
           D+ DGVKL++ K D  +K  G+PN ++ EIYL+Q+FHE+++ RAK+K IS G T+ S  P
Sbjct: 355 DTFDGVKLSDGKHDNDKKKSGFPNRISSEIYLKQLFHEHVFVRAKDKHISAGRTQPSSQP 414

Query: 419 TKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVP 478
            KDG GLLGHFC+SLAHRIFS+KV +ELEN V  VPYLHL+SHPTWHSRTSSWT+ +KVP
Sbjct: 415 AKDGFGLLGHFCMSLAHRIFSSKVLMELENLVSRVPYLHLLSHPTWHSRTSSWTLLMKVP 474

Query: 479 QSILHAESNSRTAE------TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSS 532
           +S  H    +RT++        K+HFRT VV+NDDCI+VEG+G PNVVGLFKG SED+ S
Sbjct: 475 ESSFHPGCQTRTSDIHNVKNIIKTHFRTKVVINDDCINVEGDGAPNVVGLFKGSSEDVCS 534

Query: 533 MNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAH 592
           MN+YDCDLAD+PVI+LQQVASQVIRWLHEEAL VGIKANRDFL LSFE+DQGE +SLVAH
Sbjct: 535 MNRYDCDLADIPVILLQQVASQVIRWLHEEALKVGIKANRDFLCLSFEMDQGEMLSLVAH 594

Query: 593 VDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLC 652
           V+P+D +GCISWWLVM+DGF+ + K   D  D  S+Y+KFLGHLSL+VLYSTLMDLVSLC
Sbjct: 595 VNPDDPQGCISWWLVMDDGFSEDLKFHTDAPDGGSEYRKFLGHLSLEVLYSTLMDLVSLC 654

Query: 653 -GGGSH 657
            GGG H
Sbjct: 655 NGGGRH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130170|ref|XP_002328671.1| predicted protein [Populus trichocarpa] gi|222838847|gb|EEE77198.1| predicted protein [Populus trichocarpa]

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/668 (70%), Positives = 551/668 (82%), Gaps = 12/668 (1%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M+G LE+S+DKLPVKRL++IEE G ERFP D+GYDEK+ +LIRRIDFAWAVEK+D ++ +
Sbjct: 1   MDGKLEMSLDKLPVKRLESIEENGFERFPTDIGYDEKQVALIRRIDFAWAVEKEDKEKKQ 60

Query: 61  KSSKESSSSA---TTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKA 117
           K  ++ SS     TTTPW WQNMVENL  AHQELSVIIDLINTVEANDAVTVAGMTRPK 
Sbjct: 61  KKKQKKSSRESSSTTTPWPWQNMVENLHLAHQELSVIIDLINTVEANDAVTVAGMTRPKP 120

Query: 118 LPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQ 177
           LPNE+L+DL+VS ATKLQCYR+LG YFKQSAK+LEQQ+A+EARFYGALIRLQQNWKVKRQ
Sbjct: 121 LPNEILADLAVSTATKLQCYRNLGKYFKQSAKALEQQVAREARFYGALIRLQQNWKVKRQ 180

Query: 178 RVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRF 237
           RVAA A GNEGF IDLFDNSLYDS  V +PSSLSTIRIDHDS GMLAINLP  SC S  F
Sbjct: 181 RVAAIAPGNEGFMIDLFDNSLYDSVAVFQPSSLSTIRIDHDSDGMLAINLPSKSCHSLVF 240

Query: 238 GFLGVQSGDSSKQCSKVKNSCSPR-PSKEA-KESVNDDECVREKHSLLREVHQAIFYEQV 295
           GFL   S +  K+ +K+K   S + PSK   KES++D+ECV++ H LLR+VH+ IF EQV
Sbjct: 241 GFLSGHS-NVPKKSNKIKTHGSLKNPSKNPEKESLSDNECVKDTHLLLRKVHRTIFDEQV 299

Query: 296 FDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESG 355
           FD+VNR A  QS G+NVTGI+ENYLQL IG GISIF+S++PS+QGD ++DS   +N+ES 
Sbjct: 300 FDMVNRGAVNQSSGLNVTGIQENYLQLCIGPGISIFISIVPSDQGDQAIDSEGPENLESA 359

Query: 356 ILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVS 415
           ++PLDS DGVKLAEEK + L K   +PN +TYEIYL+Q+FHEY++  AK +P  TGTR+ 
Sbjct: 360 VVPLDSFDGVKLAEEKHNSLTKKPRFPNCITYEIYLKQIFHEYVFVEAKGRPSFTGTRMP 419

Query: 416 GPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFL 475
           G P  DGSGLL HFCLSL+HRI SNKV +ELEN VC VPYLHL+SHPTWHSR+S+WT+F+
Sbjct: 420 GQPANDGSGLLSHFCLSLSHRIISNKVLMELENVVCRVPYLHLISHPTWHSRSSAWTIFM 479

Query: 476 KVPQSILHAESNSRTAE------TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSED 529
           K+P SILHA S +RT +        KS F T VVV+DDCI++E EG PNVVGLFK  S+D
Sbjct: 480 KIPPSILHASSQTRTPDIQNMKNVVKSEFWTKVVVHDDCINIEAEGAPNVVGLFKDSSDD 539

Query: 530 MSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSL 589
             S NKYDC+L DLPVIILQQVASQVIRWLHEEAL VGIKANRDFL LSFEL+QGE ++L
Sbjct: 540 KCSTNKYDCNLDDLPVIILQQVASQVIRWLHEEALAVGIKANRDFLCLSFELEQGEILNL 599

Query: 590 VAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLV 649
           VAHVDPED +GCISWWL MEDGFA E+KL ++I+D AS+Y+KFLG+L LDVLYSTLMDLV
Sbjct: 600 VAHVDPEDTQGCISWWLTMEDGFAEEKKLHMNIADGASEYRKFLGYLPLDVLYSTLMDLV 659

Query: 650 SLCGGGSH 657
           SLCGGGSH
Sbjct: 660 SLCGGGSH 667

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513925|ref|XP_003525658.1| PREDICTED: uncharacterized protein LOC100810597 [Glycine max]

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/658 (65%), Positives = 523/658 (79%), Gaps = 15/658 (2%)

Query: 5   LEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSK 64
           L+IS+DKLP+KRLD+IEE G ERFPPDV YDEKR SLIRRIDFAWAVEK      +K  K
Sbjct: 7   LQISLDKLPIKRLDSIEENGIERFPPDVDYDEKRLSLIRRIDFAWAVEK----DEEKKKK 62

Query: 65  ESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLS 124
           + SS  T+TPWQWQ MVENLQ AHQELSVIIDLINTVEANDAVTVA MTRPK LPNE LS
Sbjct: 63  QKSSKETSTPWQWQGMVENLQLAHQELSVIIDLINTVEANDAVTVASMTRPKLLPNEALS 122

Query: 125 DLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPAS 184
           DL+VSAATKLQCYRH+G YFKQSAK+ EQQ+A+EARFYGALIRLQQNWKVKRQR AA   
Sbjct: 123 DLAVSAATKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVP 182

Query: 185 GNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQS 244
           GNEGFT DLFDNS YD A + R  S+ST+R++HD+AG LAIN+ P+ C S +FGF+G QS
Sbjct: 183 GNEGFTFDLFDNS-YDQAAIIRSLSMSTVRVNHDAAGNLAINVSPDLCHSLQFGFVGAQS 241

Query: 245 GDSSKQCSKVKNSCSPRPS--KEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNRE 302
            D+ ++ ++ K+  S   +  K  +ES++D+ECV++ HSLLREVH+AIF EQVFD+VNRE
Sbjct: 242 DDTRRKSNQNKSHFSGELNLGKTGEESLSDEECVKKTHSLLREVHEAIFNEQVFDLVNRE 301

Query: 303 AFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSH 362
           AF    GV+VTGIRENYLQL +G   S++L+L+ ++Q   +V+  +  N E+ ILPL+S 
Sbjct: 302 AFNTVAGVSVTGIRENYLQLSLGQETSVYLTLVSNSQDHSTVEGELTDNAENAILPLESS 361

Query: 363 DGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDG 422
           DG+K  E K +   K G + N + YEIY+QQ+FHEY++G+  +KP S+G R+SG   KDG
Sbjct: 362 DGMK-REAKQNTSNK-GQFSNSICYEIYIQQIFHEYIFGKGGDKPSSSGNRLSGIQAKDG 419

Query: 423 SGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSIL 482
           S LLGHF  SLAHRIFS KV  ELEN VC VPY+ L+S+PTWHSR SSWT++++VPQSIL
Sbjct: 420 SSLLGHFFKSLAHRIFSTKVLAELENVVCKVPYIQLISNPTWHSRASSWTLYMEVPQSIL 479

Query: 483 HAESNSRTAE-----TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYD 537
              S ++T++       K  F T VVVNDDCI+V+ EG+PNV GLFKG+ E+  S+NKY+
Sbjct: 480 RG-SQTKTSDYYEKNAVKRQFWTKVVVNDDCINVKAEGSPNVAGLFKGKIEETHSINKYN 538

Query: 538 CDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPED 597
           C+LADLPVIILQQVASQ+I WL++EA+MVGIKANRDFL LS EL+QGET+ LVA VDPED
Sbjct: 539 CNLADLPVIILQQVASQIINWLYQEAMMVGIKANRDFLCLSLELEQGETLGLVASVDPED 598

Query: 598 MRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGG 655
             GCISWWLVMED FA E+KL + I+D AS+Y+KFLGHLSLD+LY+TL+DLVSLC GG
Sbjct: 599 SEGCISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYATLIDLVSLCSGG 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447591|ref|XP_004141551.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Cucumis sativus] gi|449481525|ref|XP_004156208.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Cucumis sativus]

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/666 (65%), Positives = 526/666 (78%), Gaps = 21/666 (3%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M+ ++++S+DKLPVKRL+AIEE G ERFP DVGY+EKR SLIRRIDFAWA+EK       
Sbjct: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEK----DDD 56

Query: 61  KSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
           K  ++ SS  ++TPWQWQ+M+ENLQ AHQELSVIIDLINTVEANDAVTVAGMTRPK LPN
Sbjct: 57  KKKQKKSSKESSTPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPN 116

Query: 121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
           EVL+DL VS ATKLQC+RHLG YFKQSAK LE+Q+A+EARFYGALIRLQQNWKVKRQRVA
Sbjct: 117 EVLADLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQNWKVKRQRVA 176

Query: 181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
           APA  NEGFTIDLFDNS  D + V RPSS STIR+DHDS+GMLAINLPPNSC S RFGFL
Sbjct: 177 APAPANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPPNSCHSLRFGFL 235

Query: 241 GVQSGDSSKQCSKVKNSCSPRPSKEA-----KESVNDDECVREKHSLLREVHQAIFYEQV 295
              SG + +   +   + S  PS ++     KE  NDDE ++E +SLLR+VH AIF EQV
Sbjct: 236 ---SGCNVENPLERDKNESTNPSNQSSVNREKEFTNDDEYIKETNSLLRQVHHAIFSEQV 292

Query: 296 FDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESG 355
           FD+VN+EAF  S+G+NVTGIRENYLQL I  G S+F+SL+PS Q   +V+   ++ +E+ 
Sbjct: 293 FDLVNQEAFNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSSQTVEGANSEILENA 352

Query: 356 ILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVS 415
            LP DS DG++L + + D L K    PN +T+EIYLQQ+FHE ++ ++ ++PIS+ +R S
Sbjct: 353 SLPFDSLDGIELPD-RSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDRPISSLSRQS 411

Query: 416 GPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFL 475
           G  + DGSGLLGHFCLSLAHR+F+N V +ELEN V  VP+L L+SHPTW+SR SSWT F+
Sbjct: 412 GQVSNDGSGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNSRKSSWTFFM 471

Query: 476 KVPQSILHAES-NSRTAE------TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSE 528
           +VP SILH  S  +RT++        K+ F T VVVNDDCI +EGEG PNVVGLF G S+
Sbjct: 472 EVPWSILHPNSIKARTSDGYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSK 531

Query: 529 DMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVS 588
           D+ S N+Y CDLADLPVIIL QVASQ+I WLHEEAL+ GIKANRDFLSLSFEL+QGET+ 
Sbjct: 532 DIYSTNRYSCDLADLPVIILLQVASQIILWLHEEALIWGIKANRDFLSLSFELEQGETLR 591

Query: 589 LVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDL 648
           LVAHVDPED +GC+SWWLVM+DG   +RKL+ + SD   +Y+KFLGHLSL+VL+STLMDL
Sbjct: 592 LVAHVDPEDPQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGHLSLEVLHSTLMDL 651

Query: 649 VSLCGG 654
           VSLC G
Sbjct: 652 VSLCSG 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563049|ref|XP_003549778.1| PREDICTED: uncharacterized protein LOC100778422 [Glycine max]

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/658 (64%), Positives = 519/658 (78%), Gaps = 14/658 (2%)

Query: 5   LEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSK 64
           L+IS+DKLP+KRLD+IEE G ERFP DV YDEKR SLIRRIDFAWAVEKD+ K+ KK   
Sbjct: 7   LQISLDKLPIKRLDSIEENGIERFPLDVDYDEKRLSLIRRIDFAWAVEKDEEKKKKKQKS 66

Query: 65  ESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLS 124
              +SA   PWQWQ MVENLQ AHQELSVIIDLINTVEANDAVTVA MTRPK LPNE LS
Sbjct: 67  SKETSA---PWQWQGMVENLQLAHQELSVIIDLINTVEANDAVTVASMTRPKLLPNEALS 123

Query: 125 DLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPAS 184
           DL+VSAATKLQCYRH+G YFKQSAK+ EQQ+A+EARFYGALIRLQQNWKVKRQR AA   
Sbjct: 124 DLAVSAATKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVP 183

Query: 185 GNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQS 244
           GNEGFT DL DNS YD A + R  S+ST+R++HD+AGMLAIN+ P+ C S +FGF+G QS
Sbjct: 184 GNEGFTFDLLDNS-YDQAAIIRSLSMSTVRVNHDAAGMLAINVSPDLCHSLQFGFVGAQS 242

Query: 245 GDSSKQCSKVKNSCSPRPS--KEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNRE 302
            D+ ++ ++ K+  S   +  +  +ES++D+ECV++ +SLLREVH+AIF EQVFD+VNRE
Sbjct: 243 DDTWRKSNENKSHFSGEHNLGEMGEESLSDEECVKKTNSLLREVHEAIFNEQVFDLVNRE 302

Query: 303 AFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSH 362
           AF    GV+VTGIRENYLQL +G G S++L+L+ ++Q   +V+  +N NVE+ ILPL+S 
Sbjct: 303 AFNTVAGVSVTGIRENYLQLSLGQGTSVYLTLVSNSQDHSTVEDELNDNVENAILPLESS 362

Query: 363 DGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDG 422
           DG+K   E      K G + N + YEIY+QQ+FHE+++G+   K IS+G R+SG   +DG
Sbjct: 363 DGMK--REAKQNTSKKGQFSNSICYEIYIQQIFHEHIFGKGDEKAISSGNRLSGVQARDG 420

Query: 423 SGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSIL 482
           S LLGHF  SLAHRIFS KV  ELEN VC VPYL L+S+PTW+SR SSWT++++VPQSIL
Sbjct: 421 SSLLGHFFKSLAHRIFSTKVLAELENVVCKVPYLQLISNPTWNSRASSWTLYMEVPQSIL 480

Query: 483 HAESNSRTAE-----TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYD 537
              S ++T++      AK  F T VVVNDDCI+V+ EG+PNV GLFKG+ E+  S+NKY+
Sbjct: 481 RG-SQTKTSDYYEKNAAKRQFWTKVVVNDDCINVKAEGSPNVAGLFKGKIEETHSINKYN 539

Query: 538 CDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPED 597
           C+LADLPVIILQQVASQ+I WL++EA+MVGIK NRDFL LS EL QGET+ LVA VDPED
Sbjct: 540 CNLADLPVIILQQVASQIINWLYQEAMMVGIKVNRDFLCLSLELKQGETLGLVASVDPED 599

Query: 598 MRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGG 655
              CISWWLVMED FA E+KL + I+D AS+Y+KFLGHLSLD+LY+TL+DLV LC GG
Sbjct: 600 SEECISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYATLIDLVGLCSGG 657

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478013|ref|XP_003609292.1| hypothetical protein MTR_4g114100 [Medicago truncatula] gi|355510347|gb|AES91489.1| hypothetical protein MTR_4g114100 [Medicago truncatula]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/657 (61%), Positives = 499/657 (75%), Gaps = 13/657 (1%)

Query: 5   LEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSK 64
           L++S+DKLP+KRLD+IEE G ERFP DV YDEKR SLIRRIDFAWA+EKD     ++  K
Sbjct: 7   LQLSLDKLPIKRLDSIEENGNERFPLDVDYDEKRVSLIRRIDFAWAIEKD-----EEKKK 61

Query: 65  ESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLS 124
           +  SS  TTPWQWQ MVENLQ AHQELSVIID INTVE NDAVTVA MTRPK+LPNE LS
Sbjct: 62  QKKSSKETTPWQWQGMVENLQLAHQELSVIIDFINTVETNDAVTVASMTRPKSLPNEALS 121

Query: 125 DLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPAS 184
           DL+VSAATKLQCYR +G YFKQSAK+ EQQ+A+EARFYGALIRLQQNWKVKRQR  +   
Sbjct: 122 DLAVSAATKLQCYRQVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQTSLVP 181

Query: 185 GNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQS 244
           GNEGFT DLFDNS YD   + R SS+ST+R++HD+AGMLAIN+ P  C S +FGF+  Q 
Sbjct: 182 GNEGFTFDLFDNS-YDQGAIVRSSSMSTVRVNHDAAGMLAINVSPELCHSLQFGFVSAQP 240

Query: 245 GDSSKQCSKVKNSCSPRP--SKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNRE 302
            D  K+ ++ ++         +   ES +D+ECV++ HSLLR+VHQAIF EQVFD+VNRE
Sbjct: 241 DDMQKKSNENQSHLLGEDCLGETGIESSSDEECVKKTHSLLRDVHQAIFNEQVFDLVNRE 300

Query: 303 AFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGIL-PLDS 361
           AF  S G  +TGIRENYLQL +G G S++LSL+ + Q + +V+  +  N +     PL+S
Sbjct: 301 AFNTSTGFTLTGIRENYLQLSLGQGTSVYLSLVSTGQDNPTVEGELTNNADDNAFSPLES 360

Query: 362 HDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKD 421
            D V + + + + L+K G + N   YEIY+QQ++HE+++GR   KPIS+G R+SG   KD
Sbjct: 361 SD-VLMHDAQQNTLKKKGRHSNSTCYEIYIQQIYHEHIFGRGSEKPISSGNRLSGAQAKD 419

Query: 422 GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSI 481
           GS LL HF +SLAHRIFS K+  ELEN V  VPYL L+S+PTWHSR SSWT+F++VP SI
Sbjct: 420 GSYLLSHFFMSLAHRIFSTKILAELENVVFKVPYLQLISNPTWHSRGSSWTLFMEVPPSI 479

Query: 482 L---HAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDC 538
           L     +++       K  F T VVV DDCI V+ EG+PNV GLFKG+SED  S+NKYDC
Sbjct: 480 LRGCQVKTSDFENNAIKRQFWTKVVVIDDCISVKAEGSPNVSGLFKGKSEDTHSINKYDC 539

Query: 539 DLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDM 598
           +LADLPVIILQQVASQ+I WL+ EALMVGIKANRDFL LSFEL+QGET+ LVA+VDP+D 
Sbjct: 540 NLADLPVIILQQVASQIINWLYHEALMVGIKANRDFLCLSFELEQGETLGLVANVDPKDS 599

Query: 599 RGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGG 655
            GCISW LVMED FA  +KL  +++D AS+Y+KFLG LSL++LY+TL+DL++   GG
Sbjct: 600 DGCISWSLVMEDSFAEVQKLHTNLTDGASEYRKFLGPLSLELLYATLIDLIAFVSGG 656

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812205|ref|XP_002873986.1| hypothetical protein ARALYDRAFT_351112 [Arabidopsis lyrata subsp. lyrata] gi|297319823|gb|EFH50245.1| hypothetical protein ARALYDRAFT_351112 [Arabidopsis lyrata subsp. lyrata]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/663 (59%), Positives = 497/663 (74%), Gaps = 25/663 (3%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M+ ++EIS+D+LP+KRL++IEE GAERFP DVGYD+KR SLIRRIDFAWA+E++D  + K
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVGYDDKRVSLIRRIDFAWALEEEDELKKK 60

Query: 61  KSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
           K  K S  SA    W+W+ MVENLQ AHQELSVIIDLI+TV+ANDAVTVAGMTRPK LPN
Sbjct: 61  KQKKSSKDSAEQ--WKWKGMVENLQLAHQELSVIIDLIDTVQANDAVTVAGMTRPKPLPN 118

Query: 121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
           E+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+NWKVKRQR+ 
Sbjct: 119 EILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRML 178

Query: 181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
           A  + NEGFTIDL D+SL+D     RPS+LSTIR+DHDSAGMLAIN+P +S  S RFGF+
Sbjct: 179 ASNASNEGFTIDLSDSSLHDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGFV 238

Query: 241 GVQSGDSSKQCSKVKNSCSPR--PSKEAKESVNDDECVREKHSLLREVHQAIFYEQV-FD 297
           G+   D++ +  +  +S      P    K+S +DDE V+E HSLLREVH++IF EQV FD
Sbjct: 239 GLNPIDNTNESDEHLDSTMGHDIPGTSEKQSASDDEYVKETHSLLREVHKSIFAEQVLFD 298

Query: 298 IVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGIL 357
           ++NREAF + +G N++GIREN++++ IG G S+F+SL PS + + S+     +  ES  L
Sbjct: 299 MLNREAFNEGVGFNISGIRENFMEMSIGQGASLFVSLHPSGK-NASI-----KKSESATL 352

Query: 358 PLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGP 417
            ++S   ++ AE   D   K  G+PN  +YEIYLQQ+FHE+ +G+AK++P S   R S  
Sbjct: 353 LIESSGRIEPAE--GDYRLKKLGFPNRASYEIYLQQIFHEHAFGKAKDQPKSKSIRASNQ 410

Query: 418 PTKD-GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLK 476
             KD  SGLL HFCLSL HRIFSN+V   LE+ VC VPYLHL+SHPTW+SRTSSWTVF+ 
Sbjct: 411 TRKDSNSGLLDHFCLSLTHRIFSNRVLEHLESVVCKVPYLHLISHPTWNSRTSSWTVFMT 470

Query: 477 VPQSILHAESNSRTAETAKSH----FRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSS 532
           VP SI+   S+   +   K +    FRT VVV D+CI VE E TPNVVGL K  S ++ +
Sbjct: 471 VPPSIIPQGSSETQSPDGKRNLKMQFRTKVVVKDECISVEAECTPNVVGLLKSSSCNLFA 530

Query: 533 MNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAH 592
           MNKY+C +ADLPVIILQQVASQ++ WL EEA  VG KA+RDFLSLS E+ +GE VSLVA 
Sbjct: 531 MNKYECGVADLPVIILQQVASQIVCWLLEEARTVGTKASRDFLSLSLEIVEGERVSLVAQ 590

Query: 593 VDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLC 652
           V+PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS LMDL++LC
Sbjct: 591 VNPEDAKGCISWWLVMENGSTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLC 643

Query: 653 GGG 655
           G G
Sbjct: 644 GTG 646

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358255|ref|NP_197517.3| RNA polymerase II transcription mediator [Arabidopsis thaliana] gi|395406781|sp|F4K460.1|MED17_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 17 gi|332005425|gb|AED92808.1| RNA polymerase II transcription mediator [Arabidopsis thaliana]

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/662 (59%), Positives = 497/662 (75%), Gaps = 23/662 (3%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M+ ++EIS+D+LP+KRL++IEE GAERFP DV YD+KR SLIRRIDFAWA+E+     LK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEE--EDELK 58

Query: 61  KSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
           K  ++ SS  +   W+W+ MVENLQ AHQEL+VIIDLI+TV+ANDAVTVAGMTRPK +PN
Sbjct: 59  KKKQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPN 118

Query: 121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
           E+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+NWKVKRQR+ 
Sbjct: 119 EILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRML 178

Query: 181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
           A  + NEGFTIDL D+SLYD     RPS+LSTIR+DHDSAGMLAIN+P +S  S RFG++
Sbjct: 179 ASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYV 238

Query: 241 GVQSGDSSKQCSKVKNSCSPR--PSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDI 298
           G+    +S +  +  +S +    P    K S +DD+ V+E HSLLREVH++IF EQ+FD+
Sbjct: 239 GLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDM 298

Query: 299 VNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILP 358
           +NREAF + +G N++G+REN++++ IG G S+F+SL PS +      S      ES  L 
Sbjct: 299 LNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ESATLL 352

Query: 359 LDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPP 418
           ++S   V+ AE  D  L+K  G+PN  +YEIYLQQ+FHE+ +G+AK++  S   R S   
Sbjct: 353 IESSGRVEPAEGGDYRLKKL-GFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQT 411

Query: 419 TKD-GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKV 477
            KD  SGLL HFCLSL HRIFSN+V V LE+ VC VPYLHL+SHPTW+SRTSSWTVF+ V
Sbjct: 412 EKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTV 471

Query: 478 PQSIL---HAESNSRTAE-TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSM 533
           P SI+    +E+ S   +   K+ FRT VVV DDCI VE E TPNVVGL K  S ++ S+
Sbjct: 472 PPSIIPQGRSETQSPDGKRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSI 531

Query: 534 NKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHV 593
           NKY+CD+ADLPV+ILQQVASQ++ WL EEA  VG KA+R+FLSLS E+ +GE VSLVAHV
Sbjct: 532 NKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHV 591

Query: 594 DPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCG 653
           +PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS LMDL++LCG
Sbjct: 592 NPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLCG 644

Query: 654 GG 655
            G
Sbjct: 645 TG 646

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489788|ref|NP_001067381.1| Os12g0638600 [Oryza sativa Japonica Group] gi|77556810|gb|ABA99606.1| expressed protein [Oryza sativa Japonica Group] gi|113649888|dbj|BAF30400.1| Os12g0638600 [Oryza sativa Japonica Group] gi|215694565|dbj|BAG89558.1| unnamed protein product [Oryza sativa Japonica Group] gi|218187319|gb|EEC69746.1| hypothetical protein OsI_39278 [Oryza sativa Indica Group]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 341/671 (50%), Positives = 448/671 (66%), Gaps = 31/671 (4%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M   + + +DKLP+KRL AI+E G E +PPD   +E+R S IRRIDF+W ++KD  K  K
Sbjct: 1   MEEAVRVDLDKLPIKRLHAIDEAGNEHYPPDTSSEEQRLSAIRRIDFSWVIDKDAKKPKK 60

Query: 61  KSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
            ++++    A    W WQ M+E+LQ A QELSV+IDLI+TVEANDAV VAGM +PK+LP 
Sbjct: 61  DTAQQQQQQA----WPWQGMMESLQQAQQELSVVIDLISTVEANDAVAVAGMLKPKSLPT 116

Query: 121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
           E L D +VSAATKLQ  RHL  YFKQSAK++EQQ  KE+RFYG+LIRLQQNWKVKRQR  
Sbjct: 117 ETLVDTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRFYGSLIRLQQNWKVKRQRFG 176

Query: 181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
               G+EGF  DL D S  D+A + R SSL  I ID DS+G L++ +P  SCR     F 
Sbjct: 177 GSGPGSEGFMFDLIDTSQLDTAAMPRLSSLPLIPIDQDSSGTLSVQVPQKSCRFLSLNFR 236

Query: 241 GVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDD--ECVREKHSLLREVHQAIFYEQVFDI 298
           G  +        K+K+  S   S  + E+ NDD  + ++  HS+LR +H++IF EQVFD+
Sbjct: 237 GDSANGVENYGHKLKDGIS---SITSSETDNDDVNKSIKHAHSILRNIHKSIFEEQVFDM 293

Query: 299 VNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLS--VDSWVNQNVE-SG 355
           V RE F QS G+NVTG+RE++LQL IG   S+ LSL  S  G  S  VD   + N E + 
Sbjct: 294 VIRETFVQSQGINVTGMREDFLQLAIGQECSLCLSLAHSGDGSDSEMVDHEDHANSEDAS 353

Query: 356 ILPLDSHDGVKLAEEKDDILRKS-GGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRV 414
            L L + +G      K D LRK   G+PNP + EIYL Q+FHE +  + + K ++ G R 
Sbjct: 354 NLVLVTMNG------KLDPLRKDVTGFPNPRSLEIYLLQLFHENILRKVREKSLNIG-RY 406

Query: 415 SGPP--TKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWT 472
             P     D  GLLGHFCL++AHRIFSNKV VELE+ V  VPYLHL S PTWHSRTSSW+
Sbjct: 407 QSPAQVAGDDYGLLGHFCLTVAHRIFSNKVLVELESVVSRVPYLHLRSLPTWHSRTSSWS 466

Query: 473 VFLKVPQSILHAESNSRTAET------AKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGR 526
           + LKVPQ IL A+  ++ ++       ++S F T V+V D  I + GEG+P++ G   G+
Sbjct: 467 LCLKVPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSPSIAGSLTGK 526

Query: 527 SEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGET 586
             D   +N Y+CDL DLP ++LQQVASQVI WLHEEAL++G+   RDFL L F+L+QGET
Sbjct: 527 PSDGYLVNSYNCDLEDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCLYFDLEQGET 586

Query: 587 VSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLM 646
           + LVA+VDP+D  GCISW+L + D    + K+S D  +   + ++FLG++SL+VLYSTLM
Sbjct: 587 LGLVANVDPDDTCGCISWYLTI-DHPTEDGKMSADSQE--FEKRRFLGYVSLEVLYSTLM 643

Query: 647 DLVSLCGGGSH 657
           DL++LC  G+H
Sbjct: 644 DLINLCNAGAH 654

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617546|gb|EEE53678.1| hypothetical protein OsJ_37013 [Oryza sativa Japonica Group]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 339/671 (50%), Positives = 448/671 (66%), Gaps = 31/671 (4%)

Query: 1   MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLK 60
           M   + + +DKLP+KRL AI+E G E +PPD   +E+R S IRRIDF+W ++KD     K
Sbjct: 1   MEEAVRVDLDKLPIKRLHAIDEAGNEHYPPDTSSEEQRLSAIRRIDFSWVIDKD----AK 56

Query: 61  KSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
           K  +   SS+++   + + M+E+LQ A QELSV+IDLI+TVEANDAV VAGM +PK+LP 
Sbjct: 57  KPKRTPPSSSSSRHGRGRGMMESLQQAQQELSVVIDLISTVEANDAVAVAGMLKPKSLPT 116

Query: 121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
           E L D +VSAATKLQ  RHL  YFKQSAK++EQQ  KE+RFYG+LIRLQQNWKVKRQR  
Sbjct: 117 ETLVDTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRFYGSLIRLQQNWKVKRQRFG 176

Query: 181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
               G+EGF  DL D S  D+A + R SSL  I ID DS+G L++ +P  SCR     F 
Sbjct: 177 GSGPGSEGFMFDLIDTSQLDTAAMPRLSSLPLIPIDQDSSGTLSVQVPQKSCRFLSLNFR 236

Query: 241 GVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDD--ECVREKHSLLREVHQAIFYEQVFDI 298
           G  +        K+K+  S   S  + E+ NDD  + ++  HS+LR +H++IF EQVFD+
Sbjct: 237 GDSANGVENYGHKLKDGIS---SITSSETDNDDVNKSIKHAHSILRNIHKSIFEEQVFDM 293

Query: 299 VNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLS--VDSWVNQNVE-SG 355
           V RE F QS G+NVTG+RE++LQL IG   S+ LSL  S  G  S  VD   + N E + 
Sbjct: 294 VIRETFVQSQGINVTGMREDFLQLAIGQECSLCLSLAHSGDGSDSEMVDHEDHANSEDAS 353

Query: 356 ILPLDSHDGVKLAEEKDDILRKS-GGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRV 414
            L L + +G      K D LRK   G+PNP + EIYL Q+FHE +  + + K ++ G R 
Sbjct: 354 NLVLVTMNG------KLDPLRKDVTGFPNPRSLEIYLLQLFHENILRKVREKSLNIG-RY 406

Query: 415 SGPP--TKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWT 472
             P     D  GLLGHFCL++AHRIFSNKV VELE+ V  VPYLHL S PTWHSRTSSW+
Sbjct: 407 QSPAQVAGDDYGLLGHFCLTVAHRIFSNKVLVELESVVSRVPYLHLRSLPTWHSRTSSWS 466

Query: 473 VFLKVPQSILHAESNSRTAET------AKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGR 526
           + LKVPQ IL A+  ++ ++       ++S F T V+V D  I + GEG+P++ G   G+
Sbjct: 467 LCLKVPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSPSIAGSLTGK 526

Query: 527 SEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGET 586
             D   +N Y+CDL DLP ++LQQVASQVI WLHEEAL++G+   RDFL L F+L+QGET
Sbjct: 527 PSDGYLVNSYNCDLEDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCLYFDLEQGET 586

Query: 587 VSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLM 646
           + LVA+VDP+D  GCISW+L + D    + K+S D  +   + ++FLG++SL+VLYSTLM
Sbjct: 587 LGLVANVDPDDTCGCISWYLTI-DHPTEDGKMSADSQE--FEKRRFLGYVSLEVLYSTLM 643

Query: 647 DLVSLCGGGSH 657
           DL++LC  G+H
Sbjct: 644 DLINLCNAGAH 654

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	657
TAIR|locus:2149294	653	AT5G20170 [Arabidopsis thalian	0.972	0.978	0.575	1.1e-192

TAIR|locus:2149294 AT5G20170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
 Identities = 381/662 (57%), Positives = 484/662 (73%)

Query:     1 MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLX 60
             M+ ++EIS+D+LP+KRL++IEE GAERFP DV YD+KR SLIRRIDFAWA+E++D   L 
Sbjct:     1 MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEEEDE--LK 58

Query:    61 XXXXXXXXXATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPN 120
                       +   W+W+ MVENLQ AHQEL+VIIDLI+TV+ANDAVTVAGMTRPK +PN
Sbjct:    59 KKKQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPN 118

Query:   121 EVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA 180
             E+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+NWKVKRQR+ 
Sbjct:   119 EILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRML 178

Query:   181 APASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFL 240
             A  + NEGFTIDL D+SLYD     RPS+LSTIR+DHDSAGMLAIN+P +S  S RFG++
Sbjct:   179 ASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYV 238

Query:   241 GVQS-GDSSKQCSKVKNSCSPR-PSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDI 298
             G+   G+S++    + ++     P    K S +DD+ V+E HSLLREVH++IF EQ+FD+
Sbjct:   239 GLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDM 298

Query:   299 VNREAFKQSLGVNVTGIRENYLQXXXXXXXXXXXXXXXXNQGDLSVDSWVNQNVESGILP 358
             +NREAF + +G N++G+REN+++                 +   S+     +  ES  L 
Sbjct:   299 LNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNP-SI-----KKSESATLL 352

Query:   359 LDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPP 418
             ++S   V+ AE  D  L+K G +PN  +YEIYLQQ+FHE+ +G+AK++  S   R S   
Sbjct:   353 IESSGRVEPAEGGDYRLKKLG-FPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQT 411

Query:   419 TKDG-SGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKV 477
              KD  SGLL HFCLSL HRIFSN+V V LE+ VC VPYLHL+SHPTW+SRTSSWTVF+ V
Sbjct:   412 EKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTV 471

Query:   478 PQSIL---HAESNSRTAE-TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSM 533
             P SI+    +E+ S   +   K+ FRT VVV DDCI VE E TPNVVGL K  S ++ S+
Sbjct:   472 PPSIIPQGRSETQSPDGKRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSI 531

Query:   534 NKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHV 593
             NKY+CD+ADLPV+ILQQVASQ++ WL EEA  VG KA+R+FLSLS E+ +GE VSLVAHV
Sbjct:   532 NKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHV 591

Query:   594 DPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCG 653
             +PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS LMDL++LCG
Sbjct:   592 NPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSVLMDLINLCG 644

Query:   654 GG 655
              G
Sbjct:   645 TG 646


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      657       631   0.00091  120 3  11 22  0.41    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  363 KB (2180 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  53.11u 0.18s 53.29t   Elapsed:  00:00:02
  Total cpu time:  53.11u 0.18s 53.29t   Elapsed:  00:00:02
  Start:  Tue May 21 04:22:51 2013   End:  Tue May 21 04:22:53 2013

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4K460	MED17_ARATH	No assigned EC number	0.5936	0.9726	0.9785	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	657
pfam10156	454	pfam10156, Med17, Subunit 17 of Mediator complex	2e-08

>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 69/363 (19%), Positives = 142/363 (39%), Gaps = 59/363 (16%)

Query: 10  DKLPVKRLDA--IEETGAERFPPDVGYDEKRESLIR---RIDFAWAVEKDDNKRLKKSSK 64
           D L ++ L     +E G+ R   D+  +  RE + +   +IDF+     ++    +  + 
Sbjct: 28  DPLSLEELIERINQERGSFR---DLTEESLREEIAKEAAKIDFS-EESDEEEDDEEDDND 83

Query: 65  ESSSSATTT---PWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMT-------- 113
           +S  +  T    P     ++E L  A  E S+ +D ++ + +      A  +        
Sbjct: 84  DSEENKDTVEEFPKARDEVLEQLNQALNESSLALDFVSLLLSKVKPRQAKTSLSPHLKQL 143

Query: 114 ------------RPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARF 161
                        P+      + D ++    KL+          ++A+ LE+++AKE ++
Sbjct: 144 VPPGSLNADKVDPPEKKNESRVKDKTLQKGWKLKSLNEAADLLLKAAERLEKEVAKETKY 203

Query: 162 YGALIRLQQN-WKVKR--QRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHD 218
           +  ++ +++N W + R  Q V        G+          D+    R   L+ +R   D
Sbjct: 204 WSEVLNVKENGWVLFRLPQEVQRSLGVKYGYR---------DAGSKFRDRGLAVLRRTPD 254

Query: 219 SAGMLAINLPPNSCRSF--RFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECV 276
                ++ L P+S  S      FL V+     +    V        S     S   D+ +
Sbjct: 255 D---GSLELDPSSVGSDLSGSKFLRVRILTKIEDDGIVTGE-----SSLPTSSQPSDDPI 306

Query: 277 REKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIP 336
            ++    R     +F E++F  ++REA +Q +   VT IR+N + + +     I + L+ 
Sbjct: 307 EKRIEKARNT---LFEEELFHELSREA-RQLISYGVT-IRDNKITIELSPNEKIEIELVS 361

Query: 337 SNQ 339
            ++
Sbjct: 362 LDE 364

This Mediator complex subunit was formerly known as Srb4 in yeasts or Trap80 in Drosophila and human. The Med17 subunit is located within the head domain and is essential for cell viability to the extent that a mutant strain of cerevisiae lacking it shows all RNA polymerase II-dependent transcription ceasing at non-permissive temperatures. Length = 454

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	657
KOG4512	625	consensus Vitamin D3 receptor interacting protein	100.0
PF10156	467	Med17: Subunit 17 of Mediator complex; InterPro: I	100.0

>KOG4512 consensus Vitamin D3 receptor interacting protein [Transcription; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-59  Score=497.84  Aligned_cols=489  Identities=19%  Similarity=0.210  Sum_probs=367.6

Q ss_pred             CCCceeeeeccCcccchhcccccccccCCCCCChhHHHHHHhccccccccccchhhhhhccccc----cCC--CCCCCCc
Q 006207            1 MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSK----ESS--SSATTTP   74 (657)
Q Consensus         1 M~~~V~lSLE~~~e~~IqeI~~DG~EiY~~pls~sEkl~klaqRIDFsk~~~~d~kk~~~~~~E----e~e--~~~qp~~   74 (657)
                      |+.+|+||+|+.+|++|.||++||+|+|+||+++||.+++||+||||+++..+|.|+.++- ++    +++  .++|+++
T Consensus         1 ms~av~isiesace~qv~evg~DGtE~y~Pp~~~Se~la~la~RIDfs~~S~dd~k~~e~~-a~~~aD~d~~~~qfq~sl   79 (625)
T KOG4512|consen    1 MSRAVRISIESACEKQVHEVGEDGTEVYEPPEPESEDLANLAKRIDFSLESNDDWKGTEPI-AEIGADGDERYLQFQTSL   79 (625)
T ss_pred             CCcceeeehhhHHHHHHHHHccCCceeecCCCccchHHHHHHHhcccccccchhhhccccc-ccccccccchhccccccc
Confidence            8999999999999999999999999999999999999999999999999887665544331 12    222  6799999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeccC----CCCCCCchhhhchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006207           75 WQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGM----TRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKS  150 (657)
Q Consensus        75 wPW~sV~~~L~~Al~El~VLlDvLsilk~~~y~~ld~~----tkP~p~p~~il~d~avqv~~K~kaL~~Aa~iLk~gAer  150 (657)
                      |||+.|+|+|+.|++|+|||.|++++.++++|+++|+.    ..|+|+         +|..+|++++.+||++|++||+|
T Consensus        80 wpwD~Vrn~lr~altE~cvL~dv~Si~~dkk~~~lDpl~~ea~~~kp~---------~Q~~S~kk~~~~aaq~lLkgaer  150 (625)
T KOG4512|consen   80 WPWDHVRNLLRSALTEWCVLVDVKSIYEDKKVDPLDPLDDEAEAGKPT---------NQEKSNKKREKEAAQKLLKGAER  150 (625)
T ss_pred             CcHHHHHHHHHHHHhhhhheecccchhcccccCCCCcchhhccCCCch---------HHHHhhhHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999998842    344433         89999999999999999999999


Q ss_pred             HHHHH----HHH-HHHHHHHHHHhhcceeeee----------cccCCCCCCCCceEEeecCccCCCCCCCCCCCCccccc
Q 006207          151 LEQQI----AKE-ARFYGALIRLQQNWKVKRQ----------RVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRI  215 (657)
Q Consensus       151 Leq~v----~re-~~F~~eLlrLRqnWrLkr~----------R~aGs~~g~~GF~Fdv~k~s~~D~a~~~r~~sls~i~~  215 (657)
                      |+.++    |+. ++|..+++||||+|||||+          |.||+.|+++| +|+|.+++..|....+          
T Consensus       151 l~~si~eq~Nk~v~dF~~ellrlrq~WrlrKv~n~i~gdlsyr~ags~f~~tg-tFeV~k~~~~d~d~~~----------  219 (625)
T KOG4512|consen  151 LNPSIIEQQNKKVEDFRFELLRLRQFWRLRKVYNFIKGDLSYRFAGSIFKNTG-TFEVKKRFYQDFDRFF----------  219 (625)
T ss_pred             cChhhhHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhccCce-eEEEehhhhhhHHhhh----------
Confidence            99887    454 9999999999999999999          99999999999 9999999976643311          


Q ss_pred             cCCCCCceEEecCCCCccceeEEEeeeecCCCccccccccCC------CCCCCCccccccCCchhhhHhHHHHHHHHHHH
Q 006207          216 DHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNS------CSPRPSKEAKESVNDDECVREKHSLLREVHQA  289 (657)
Q Consensus       216 ~~d~~g~L~V~vP~dl~~~L~~s~i~V~~~~~~k~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~w~~~L~~AQ~s  289 (657)
                       ..+.+.|.|.+|.++.|+   +||+|+   ++|+.+|++..      ..|.+.         + ...||+..|+.|||+
T Consensus       220 -~e~~~~l~v~~p~~l~gv---Ayikv~---~qk~~pd~g~~~svnl~~hp~~~---------~-q~g~wq~~Le~aqnv  282 (625)
T KOG4512|consen  220 -AEKFVHLFVMKPGKLPGV---AYIKVN---EQKVTPDAGPWSSVNLYLHPESL---------N-QLGHWQTLLEVAQNV  282 (625)
T ss_pred             -hhhccceeeeccccCCCc---eeEeee---eeecCCccccHHHHHHhcCCccc---------c-ccchHHHHHHHHHHH
Confidence             357788999999999999   999998   99999998772      222221         2 446999999999999


Q ss_pred             HhHHHHHHHHHHHHhhcCCce--EEeeeccceEEEeecCCeeEEEEeccCCCCCCcccccccccccccccccccCCccch
Q 006207          290 IFYEQVFDIVNREAFKQSLGV--NVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKL  367 (657)
Q Consensus       290 LFceELF~~L~REA~ql~s~i--~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~~~d~~~~~~L~l~~~~~~~~  367 (657)
                      +||+|+|++|+|||+|+++++  .|+|   |+|...++|.+||.|+|||+.++.++--...+||                
T Consensus       283 l~ckemfAql~reaIqvq~p~Ph~V~~---Nqi~~~~~p~lQl~Islchsa~~k~sQ~a~~ndh----------------  343 (625)
T KOG4512|consen  283 LSCKEMFAQLVREAIQVQEPTPHTVST---NQITQWIWPALQLAISLCHSAQDKQSQRASSNDH----------------  343 (625)
T ss_pred             HHHHHHHHHHhhhceeecCCCCeeeec---cceeeeecHHHHHHHHHHhhcchhhcCcCCccch----------------
Confidence            999999999999999999998  7777   9999999999999999999998773322211111                


Q ss_pred             hhhhhhhhccCCCCCCCcchHHHHHHHHHH-HHhhccCCC-------CCCcCcccCCCCCC---------CCCchhHHHH
Q 006207          368 AEEKDDILRKSGGYPNPLTYEIYLQQVFHE-YLYGRAKNK-------PISTGTRVSGPPTK---------DGSGLLGHFC  430 (657)
Q Consensus       368 ~~~~~~~~~~~~~~~n~~s~eiyL~q~~~e-~~~~~~~e~-------l~~~~~~~~g~~a~---------~~~~LL~~f~  430 (657)
                                      --++|.-|.+..|| |-|.+.--+       +-.+.|..+|+.|.         ...++|+-|.
T Consensus       344 ----------------~~vleh~lHll~refh~~ss~~m~phpaSapfg~K~~~l~gpma~d~n~l~~~~~s~g~Le~ii  407 (625)
T KOG4512|consen  344 ----------------GLVLEHMLHLLRREFHDFSSSIMKPHPASAPFGAKSCKLEGPMAEDQNRLKKTLFSFGKLECII  407 (625)
T ss_pred             ----------------hhHHHHHHHHHHHHHHhhccccCCCCCccccccchhhhccCcchhhHHHHHHHHHHHHHHHHHH
Confidence                            12558888888888 333311111       22355566677664         4568889999


Q ss_pred             HhhhhhhhhhhHHHHHhhhhcCCCceeeeecCcccccccceEEEEecCcccccccCCCCchhhhccceeeeEEeccccce
Q 006207          431 LSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIH  510 (657)
Q Consensus       431 ~~~~Hr~~s~kv~~~Le~~v~~vp~l~~~s~ptw~~~~ssw~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  510 (657)
                      +.+.|--...+....+||+...+--=++++  -|+.|-+---.|.+|-=-|.--.-.++    +..+|.-+    ...| 
T Consensus       408 ~Qa~Hif~rsr~a~~vd~la~~~edpqi~~--hW~~~n~~~~scvkl~i~~~Gy~~i~~----~~li~~I~----~rsl-  476 (625)
T KOG4512|consen  408 KQAPHIFSRSRLAIFVDNLAFLREDPQIRE--HWRVRNVGDYSCVKLSIHIFGYKYITP----IQLIFDIS----RRSL-  476 (625)
T ss_pred             HhCchhHHHHHHHHHHHHHHhhhcCHHHHH--HHhhccCCceeEEEEEEEEeeeccccc----eeEEEEhh----hhHH-
Confidence            899887777899999999999993333444  477777655555554333322221111    11111110    0011 


Q ss_pred             eccCCCCccccccccCCCCCCCcc-ccccCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccceeeEEEEecCC--ceE
Q 006207          511 VEGEGTPNVVGLFKGRSEDMSSMN-KYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG--ETV  587 (657)
Q Consensus       511 ~~~~~~p~~~~~~~~~~~~~~~~~-~~~c~~~~lp~~~lqq~a~~~i~wl~~ea~~~g~~~~~dfl~l~~~~~~~--~~~  587 (657)
                                   +---.||.-|. ||-=+  +|--|||-|+.++=|.=+..=|..+|-++    |+-|=.+.-|  |-|
T Consensus       477 -------------~~~~rdgrVi~lSy~~q--elrd~ll~qi~qhqI~~~~~Lar~m~w~v----ls~Snh~g~g~~E~v  537 (625)
T KOG4512|consen  477 -------------SNNMRDGRVIELSYPKQ--ELRDMLLVQIVQHQIQSGNGLARDMKWKV----LSYSNHYGEGDSEKV  537 (625)
T ss_pred             -------------hhhccCCcEEEEecCHH--HHHHHHHHHHHHHHHHHHHhHhhccCceE----eecccccCCCccccc
Confidence                         11111222221 23222  34568999999999999999999999887    3333114444  457


Q ss_pred             eEEEe
Q 006207          588 SLVAH  592 (657)
Q Consensus       588 ~lva~  592 (657)
                      |+.-.
T Consensus       538 gnas~  542 (625)
T KOG4512|consen  538 GNASW  542 (625)
T ss_pred             ccchh
Confidence            76433

>PF10156 Med17: Subunit 17 of Mediator complex; InterPro: IPR019313 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=6.7e-46  Score=406.93  Aligned_cols=394  Identities=20%  Similarity=0.238  Sum_probs=143.6

Q ss_pred             eeeeccCcccchhcccccccccCCCCCChhHHHHHHhccccccccccchhhhhhccccc--cCCCCCCCCccchHHHHHH
Q 006207            6 EISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSK--ESSSSATTTPWQWQNMVEN   83 (657)
Q Consensus         6 ~lSLE~~~e~~IqeI~~DG~EiY~~pls~sEkl~klaqRIDFsk~~~~d~kk~~~~~~E--e~e~~~qp~~wPW~sV~~~   83 (657)
                      +++|+.+.++.++|+++ |.++|.++.++.+++++.++++||.+..+++++.++.+..+  +++.....-.+.|++|+++
T Consensus        33 ~~~l~~~i~ri~~Erg~-~~f~~lte~sL~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~r~ev~~~  111 (467)
T PF10156_consen   33 PLSLEELIERINQERGP-GSFRDLTEESLQEEIAALAQKIDFSEESDEEEEDEEDEEKEEEEEEMTQEQFPKARMEVLEH  111 (467)
T ss_dssp             -------------------------------------------------------------------TTHHHHHHHHSTT
T ss_pred             CCcHHHHHHHHHhCcCC-CCcccCCHHHHHHHHHhhhcccchhhcCcccccccccccccccccccchhHHHHHHHHHHHH
Confidence            45666678999999999 99999999999999999999999998766543322211101  1112233334559999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcee-----ecc---------------CCCCCCCchhhhchhhhhHHHHHHHHHHHHHH
Q 006207           84 LQFAHQELSVIIDLINTVEANDAVT-----VAG---------------MTRPKALPNEVLSDLSVSAATKLQCYRHLGIY  143 (657)
Q Consensus        84 L~~Al~El~VLlDvLsilk~~~y~~-----ld~---------------~tkP~p~p~~il~d~avqv~~K~kaL~~Aa~i  143 (657)
                      |+.|++|+++++|+|++++++.++.     +++               +.+|++.+...+.+.+++++||+++|++|+++
T Consensus       112 l~~A~~E~s~~LD~vSlLls~~~p~~a~~s~Sp~l~~~~p~gsL~~d~i~~~~~~~~~~~~~~~v~~g~K~~aL~~a~~~  191 (467)
T PF10156_consen  112 LNQALNESSVALDFVSLLLSKVRPTQAYSSMSPFLKKKVPPGSLNADKIPPPPKSESEQLDDAAVSIGWKLKALNKAADL  191 (467)
T ss_dssp             TTTTTHHHHHHHHHHHHH--SSSS-SSSTTSSTT-------------------------SSHHHHTTTTTTTTTSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccCcccCCCCCcCccccccCCCCCCchHhHhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999996553     332               23455555667778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc-ceeeeecccCCC-CC-CCCceEEeecCccCCCCCCC-CCCCCccccccCCC
Q 006207          144 FKQSAKSLEQQIAKEARFYGALIRLQQN-WKVKRQRVAAPA-SG-NEGFTIDLFDNSLYDSAPVS-RPSSLSTIRIDHDS  219 (657)
Q Consensus       144 Lk~gAerLeq~v~re~~F~~eLlrLRqn-WrLkr~R~aGs~-~g-~~GF~Fdv~k~s~~D~a~~~-r~~sls~i~~~~d~  219 (657)
                      |++||+||+++++++++||.++++||+| |+|+|.+..+.. +| .+||.         +.++.| |+++++.+|.+.+.
T Consensus       192 l~~aa~rL~~~v~~E~~yw~el~~lr~~gW~l~r~~~~~~~~lgv~~G~~---------~ags~f~~~~g~a~lr~~~~~  262 (467)
T PF10156_consen  192 LKQAAERLEKQVERETRYWSELLRLRQNGWRLFRMPRKRQRSLGVDYGFR---------EAGSEFRRDRGFAVLRRSDDT  262 (467)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHTT---------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeccCCCCceEEEEecCC---------CCCCccCCCCceeeeccCccc
Confidence            9999999999999999999999999997 999965211111 22 33422         233445 66666666653221


Q ss_pred             -------CCceEEecCCCCccceeEEEeeeecCCCccccccccCCCCCCCCccccccCCchhhhHhHHHHHHHHHHHHhH
Q 006207          220 -------AGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFY  292 (657)
Q Consensus       220 -------~g~L~V~vP~dl~~~L~~s~i~V~~~~~~k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~~L~~AQ~sLFc  292 (657)
                             ++.+ +.+|..+.++   .||.|.   +.+...+.++...-..+..   +.+...+..+|+++|++||++|||
T Consensus       263 g~~~l~~~~~~-~~~~~~~~~~---~~lrV~---I~~~~~~~~d~~~~g~s~~---~~~~~~~~~~~~~~l~~Ar~~lFe  332 (467)
T PF10156_consen  263 GSLELDPSSSL-VSVPSDLKGR---KFLRVR---IQTKIEDEDDGILTGESSL---PRSSKPDDSPIEKRLEEARNTLFE  332 (467)
T ss_dssp             ------------------------------------------------------------------HHHHTTTTSTHHHH
T ss_pred             CCcccCccccc-ccCCccCCCc---eEEEEE---EEeccccCCCCceecCCCC---cccccccchhHHHHHHHHHHHHHH
Confidence                   2334 6678888888   788887   6544433222100000000   002334678999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEeeeccceEEEeecCCeeEEEEeccCCCCCCcccccccccccccccccccCCccchhhhhh
Q 006207          293 EQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKD  372 (657)
Q Consensus       293 eELF~~L~REA~ql~s~i~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~~~d~~~~~~L~l~~~~~~~~~~~~~  372 (657)
                      +|||++|+|||+++.+++..  +++|+|+++++||++|+|+|++.+.++.+.....+.                      
T Consensus       333 eELF~~L~REA~~L~s~~v~--i~~n~I~~~~~~~~~l~ieLv~~~~~~~~~~~~~~~----------------------  388 (467)
T PF10156_consen  333 EELFYQLNREARQLISYGVR--IRGNKIIIELFPNEKLEIELVSLDDDSSSNSSQESP----------------------  388 (467)
T ss_dssp             HHHHHHHHHHHHHHHS------SSS-------S-S--------S----GGGTSTTTTT----------------------
T ss_pred             HHHHHHHHHHHHhcCCCCce--EEcCEEEEecCCCCEEEEEEecCCCCcccccccCCC----------------------
Confidence            99999999999999988622  456999999999999999999887666222211000                      


Q ss_pred             hhhccCCCCCCCcchHHHHHHHHHHHHhhccCCC----CCCcCcccCCCCCCCCCchhHHHHHhhhhhhhhhhHHHHHhh
Q 006207          373 DILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNK----PISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELEN  448 (657)
Q Consensus       373 ~~~~~~~~~~n~~s~eiyL~q~~~e~~~~~~~e~----l~~~~~~~~g~~a~~~~~LL~~f~~~~~Hr~~s~kv~~~Le~  448 (657)
                         .   .--.+-.+.++|.+++..++--....+    +....+    .+......||..++..++|+.+..++...|++
T Consensus       389 ---~---~~~~a~~i~~~LrlLL~~~hr~nl~~r~~p~~~~~~~----~~~~~~~~LLrpil~~~~H~~~~~~~~~~L~~  458 (467)
T PF10156_consen  389 ---I---NDDLADLILHSLRLLLRHAHRQNLRRRSRPPPPLTPR----KRPNPSPSLLRPILGYIRHENLVQRLESILDS  458 (467)
T ss_dssp             ---T---T-CTTCHHHHHHHHHHHHHHHHHHHHHHT-------------------------TTSTTTTTTSHHHHHHHHT
T ss_pred             ---C---cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0   000123456666666665333221111    111111    23567899999999999999999999999999


Q ss_pred             hhcCC
Q 006207          449 AVCGV  453 (657)
Q Consensus       449 ~v~~v  453 (657)
                      ++..+
T Consensus       459 ~~~~l  463 (467)
T PF10156_consen  459 LVREL  463 (467)
T ss_dssp             THHHH
T ss_pred             HHHHh
Confidence            98765

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med17 of the Mediator complex. The Med17 subunit is located within the head domain and is essential for cell viability to the extent that a mutant strain of Saccharomyces cerevisiae (Baker's yeast) lacking it shows all RNA polymerase II-dependent transcription ceasing at non-permissive temperatures.; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3RJ1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	657
3rj1_B	583	Mediator of RNA polymerase II transcription subun;	9e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae} Length = 583

 Score =  111 bits (277), Expect = 9e-26
 Identities = 35/321 (10%), Positives = 106/321 (33%), Gaps = 41/321 (12%)

Query: 52  EKDDNKRLKKSSKESSSSATTTPWQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAG 111
            K +       + E+  +      + ++M+E++  A  E S+ ++ ++ + ++   +   
Sbjct: 82  HKTNENGETDDNIETVMTQEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGM 141

Query: 112 MT--------------------RPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSL 151
            +                           E +    ++   KLQ         + S   L
Sbjct: 142 SSMSPFLRKVVKPSSLNSDKIPYVAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKL 201

Query: 152 EQQIAKEARFYGALIRLQQN----WKVKRQRVAAPASGNE-GFTIDLFDNSLYDS--APV 204
              +  E  ++  +++   N    +K++ +         + G+  D      +D   A +
Sbjct: 202 SSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGYE-DSGSTYKHDRGIANI 260

Query: 205 SRPSSLSTIRID-HDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPS 263
                   + +  H S+     +   +  +  R         +          S      
Sbjct: 261 RNNIESQNLDLIPHSSSVFKGTDFVHSVKKFLRVRIFTKIESEDDYIL-----SGESVMD 315

Query: 264 KEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFK-QSLGVNVTGIRENYLQL 322
           ++++    + + +R++  LL+++   IF +++   + +E     S GV++    +  ++L
Sbjct: 316 RDSESEEAETKDIRKQIQLLKKI---IFEKELMYQIKKECALLISYGVSIENENKVIIEL 372

Query: 323 GIGLGISIFLSLIPSNQGDLS 343
                    + L+  +   + 
Sbjct: 373 P---NEKFEIELLSLDDDSIV 390

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 91/650 (14%), Positives = 190/650 (29%), Gaps = 181/650 (27%)

Query: 81  VENLQFAHQE-LSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRH 139
               Q+ +++ LSV  D    V+  D   V  M +   L  E +  + +S        R 
Sbjct: 11  TGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKS-ILSKEEIDHIIMSKDAVSGTLRL 67

Query: 140 LGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVA--APASGNEGF--TID-LF 194
                 +  + ++       +F   ++R+   + +   +     P+     +    D L+
Sbjct: 68  FWTLLSKQEEMVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 195 -DNSLYDSAPVSRPSSLSTIR------------IDHDSAGM-------LAINLPPNSCRS 234
            DN ++    VSR      +R            +     G+       +A+    + C S
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---GVLGSGKTWVAL----DVCLS 173

Query: 235 FR----FGF----LGVQSGDSSKQ--------CSKVKNSCSPRPSKEAKESVNDDECVRE 278
           ++      F    L +++ +S +           ++  + + R    +   +       E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 279 KHSLLREVHQAIFYEQ---VFDIVNR----EAFK---QSLGVNVTGIRENYLQLGIGLGI 328
              LL+       YE    V   V       AF    + L   +T  R   +   +    
Sbjct: 234 LRRLLKS-KP---YENCLLVLLNVQNAKAWNAFNLSCKIL---LT-TRFKQVTDFLSAAT 285

Query: 329 SIFLSLIPSNQG---DLSVD---SWVNQNVESGILPLDSHDGVKL-----AEEKDDILRK 377
           +  +SL   +     D        +++   +   LP +            AE   D    
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRD---- 339

Query: 378 SGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRI 437
                   T++   + V  +          I +   V  P           F   L+  +
Sbjct: 340 -----GLATWD-NWKHVNCD-----KLTTIIESSLNVLEPAE-----YRKMF-DRLS--V 380

Query: 438 FSNKVHVELENAVCGVPY--LHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAK 495
           F    H         +P   L L+    W     S          +++        E  K
Sbjct: 381 FPPSAH---------IPTILLSLI----WFDVIKS------DVMVVVNKLHKYSLVE--K 419

Query: 496 SHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQV 555
               + + +    I++E           K + E+  ++++           I+      +
Sbjct: 420 QPKESTISIPS--IYLE----------LKVKLENEYALHR----------SIVDHY--NI 455

Query: 556 IRWLHEEALMVGIKANRD---FLSLSFEL---DQGETVSLVAHVDPEDMRGCISWWL--- 606
            +    + L   I    D   +  +   L   +  E ++L   V   D R     +L   
Sbjct: 456 PKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFR-----FLEQK 506

Query: 607 VMEDGFAAERKLSI-DISDDASDYKKFL--GHLSLDVLYSTLMDLVSLCG 653
           +  D  A     SI +       YK ++       + L + ++D +    
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 79/582 (13%), Positives = 154/582 (26%), Gaps = 178/582 (30%)

Query: 6   EISVDKLPVKRLDAI-------EETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKR 58
            I + K  V     +       +E   ++F   V      E L  RI++ + +       
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF---VE-----EVL--RINYKFLMS-----P 97

Query: 59  LKKSSKESSSSATTTPWQWQNMVENLQ-FA------HQELSVIIDLINTVEANDAVTVAG 111
           +K   ++ S        Q   +  + Q FA       Q    +   +  +     V + G
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 112 M-----TRPKALPNEVLSDLSVSAATKLQCYRHLGIY---FKQSAKSLEQQIAKEARFYG 163
           +     T    +  +V          K+QC     I+    K    S E  +    +   
Sbjct: 158 VLGSGKT---WVALDVCLSY------KVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLL- 206

Query: 164 ALIRLQQNWKVKRQRVAAPASGNEGFTI---DLFDNSLYDSAPVSRPSSLSTIRIDH--D 218
              ++  NW  +    +               L  +  Y        + L  + + +  +
Sbjct: 207 --YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-------ENCL--LVLLNVQN 255

Query: 219 SAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDE---- 274
           +    A NL   SC+        + +            + +         ++  DE    
Sbjct: 256 AKAWNAFNL---SCKIL------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 275 ---CVREKHSLL-REVHQ------AIFYEQVFDIVNR-------------EAFKQSLGV- 310
               +  +   L REV        +I  E + D +                  + SL V 
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 311 NVTGIRENYLQLGIGLGISIFL--SLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLA 368
                R+ + +L      S+F   + IP+    LS+  W +          D    V   
Sbjct: 367 EPAEYRKMFDRL------SVFPPSAHIPTIL--LSL-IWFDVIKS------DVMVVVNKL 411

Query: 369 EEKDDILRKSGGYPNPLTYEIY-LQQVF----------HEYL---YGRAKNKPISTGTRV 414
            +   + ++    P   T  I  +              H  +   Y   K          
Sbjct: 412 HKYSLVEKQ----PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-- 465

Query: 415 SGPPTKDGSGLLGHFCLSLAH---------------RIF------SNKVHVELENAVCGV 453
             PP  D      +F   + H                +F        K+  +        
Sbjct: 466 --PPYLDQ-----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 454 PYLHLV------------SHPTWHSRTSSWTVFLKVPQSILH 483
             L+ +            + P +    ++   FL   +  L 
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	657
4h63_Q	469	Mediator of RNA polymerase II transcription subun;	99.96
4gwp_B	687	Mediator of RNA polymerase II transcription subun;	99.95
4h62_Q	312	Mediator of RNA polymerase II transcription subun;	98.5

>4h63_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.1e-27  Score=261.63  Aligned_cols=232  Identities=13%  Similarity=0.174  Sum_probs=166.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhccCceeec-c--------------CCCCCCCchhhhchhhhhHHHHHHHHHHH
Q 006207           76 QWQNMVENLQFAHQELSVIIDLINTVEANDAVTVA-G--------------MTRPKALPNEVLSDLSVSAATKLQCYRHL  140 (657)
Q Consensus        76 PW~sV~~~L~~Al~El~VLlDvLsilk~~~y~~ld-~--------------~tkP~p~p~~il~d~avqv~~K~kaL~~A  140 (657)
                      ..++|.++|++|++|++.++|+++++.++.-+.-. .              ...+.+.|+....|.++..|||+++|++|
T Consensus        28 ~R~Eml~~i~~A~nE~slaLDfvSLLLS~~~p~~~~tmSP~Lk~~vp~gSL~~d~v~~p~~~~~~~~vs~GwKl~sL~~A  107 (469)
T 4h63_Q           28 YKKELIEQIMIAQTECSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKEKSLTSS  107 (469)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSGGGGGSCHHHHHHSCTTCEEEEECCCCCCCSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCccCCCCCCCCCccchHHHHHHHHHHHHHHHHH
Confidence            45999999999999999999999999875433211 0              01123446667788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cceeeeecccCCCCC-CCCceEEeecCccCCCCCCCCCCCCccccccCC
Q 006207          141 GIYFKQSAKSLEQQIAKEARFYGALIRLQQ-NWKVKRQRVAAPASG-NEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHD  218 (657)
Q Consensus       141 a~iLk~gAerLeq~v~re~~F~~eLlrLRq-nWrLkr~R~aGs~~g-~~GF~Fdv~k~s~~D~a~~~r~~sls~i~~~~d  218 (657)
                      +++|++||+||++++++|++||.+++++|+ +|+|+|.|... .+| ++||.         |.+    +++++.+|.+. 
T Consensus       108 a~~lk~AA~rLe~ev~~E~kYW~~il~vr~~gW~l~r~r~~r-~lGVkyGf~---------es~----s~glA~lR~~~-  172 (469)
T 4h63_Q          108 CKFLFEAKERLTSVVETEHEYYTELVKVKEASWPLFNSQGSN-HLSVQYSCL---------GGI----SLGLGLIRMKP-  172 (469)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECTTTC-SEEECCSCS---------CCS----SCCCEEEEECT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCc-ccccccCcC---------CCC----CcceeeeecCC-
Confidence            999999999999999999999999999998 59999985332 234 55643         222    25788888643 


Q ss_pred             CCCceEEecCCCCccceeEEEeeeecCCCc-cccccccCCCCCCCCccccccCCchhhhHhHHHHHHHHHHHHhHHHHHH
Q 006207          219 SAGMLAINLPPNSCRSFRFGFLGVQSGDSS-KQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFD  297 (657)
Q Consensus       219 ~~g~L~V~vP~dl~~~L~~s~i~V~~~~~~-k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~~L~~AQ~sLFceELF~  297 (657)
                      ..+.+.+ .|....+.   .++.|.   +. ++...++....+.+..         .....|...|++||++|||+|||+
T Consensus       173 ~~~~~~~-~~~~~~~~---~~lrV~---I~~~d~~~~g~S~~~~~~~---------~~~~~i~~~I~~AR~~IFEeELF~  236 (469)
T 4h63_Q          173 ESKSFEV-QSSLLYSQ---AALKIS---ILNKDRDEIGSSTWSWPSQ---------NCNSVLLKDIYKLQEILFEMDIWN  236 (469)
T ss_dssp             TTSCEEE-ECSCSCSC---CEEEEE---EECTTCCEEEEEECCCCCC---------CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceee-ccCCCCCc---eEEEEE---EEecCCceeeeecCCCCCC---------CCcchHHHHHHHHHHHHHHHHHHH
Confidence            3344433 44444444   334443   21 2222111111111111         123579999999999999999999


Q ss_pred             HHHHHHhhcCCce-EEeeeccceEEEeecCCeeEEEEeccCCCCC
Q 006207          298 IVNREAFKQSLGV-NVTGIRENYLQLGIGLGISIFLSLIPSNQGD  341 (657)
Q Consensus       298 ~L~REA~ql~s~i-~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~  341 (657)
                      +|+|||.++.++. .|   ++|.|.++++++.++.|+|+..+.+.
T Consensus       237 eL~REA~~L~s~gV~~---~~~~I~iel~~~~~i~ieLv~l~~~~  278 (469)
T 4h63_Q          237 SLLQEAQSCGNQGVNF---TGDEILVPISDDHVVRITLETSSKNT  278 (469)
T ss_dssp             HHHHHHHHCCTTCCEE---CSSEEEEECSTTCEEEEEEECCC---
T ss_pred             HHHHHHHhhccCceEE---ecCEEEEEcCCCCEEEEEEecCCCcc
Confidence            9999999998875 54   57999999999999999999887665

>4gwp_B Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_B 3rj1_B

Probab=99.95  E-value=4.3e-28  Score=274.46  Aligned_cols=337  Identities=11%  Similarity=0.114  Sum_probs=223.5

Q ss_pred             CCCCccch-HHHHHHHHHHHHHHHHHHHHHHhhhccCceeec--------------------cCCCCCCCchhhhchhhh
Q 006207           70 ATTTPWQW-QNMVENLQFAHQELSVIIDLINTVEANDAVTVA--------------------GMTRPKALPNEVLSDLSV  128 (657)
Q Consensus        70 ~qp~~wPW-~sV~~~L~~Al~El~VLlDvLsilk~~~y~~ld--------------------~~tkP~p~p~~il~d~av  128 (657)
                      .+...|.+ .+|.++|+.|++|++.++|++++|.++..+..+                    .+.+|++.+.+.+.+.++
T Consensus       196 t~E~l~k~R~Eml~~l~~A~nE~slALDfVSLLLSk~~P~~A~sSmSP~Lk~~vp~GSL~ad~v~~p~~~~s~~~~~~~v  275 (687)
T 4gwp_B          196 TQEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLRKVVKPSSLNSDKIPYVAPTKKEYIELDIL  275 (687)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHTTSHHHHTCCCCCCCCCCCHHHHHHHHHSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccChhhhccCCCCccccCcCCCCCCChHHHHHHHHH
Confidence            34467788 889999999999999999999999986544211                    234455556677778899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cceeeeecc---cCCCCC-CCCceEEeecCccCCCCC
Q 006207          129 SAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQ-NWKVKRQRV---AAPASG-NEGFTIDLFDNSLYDSAP  203 (657)
Q Consensus       129 qv~~K~kaL~~Aa~iLk~gAerLeq~v~re~~F~~eLlrLRq-nWrLkr~R~---aGs~~g-~~GF~Fdv~k~s~~D~a~  203 (657)
                      ..|||.++|++|+++|++||++|++++++|++||.+++++++ +|++.|.|.   ....+| ++||.         |+++
T Consensus       276 s~GwKl~aL~~aa~~l~~AA~rLe~ev~~E~kYW~~il~v~~~~w~i~r~r~~~~~~~~lGVkyGf~---------eSgs  346 (687)
T 4gwp_B          276 NKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGYE---------DSGS  346 (687)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSCCCEEEESSCSSSSEEEECCCS---------CCSS
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCCCCCceeEEeccCC---------CCch
Confidence            999999999999999999999999999999999999999886 888877732   222334 55644         5667


Q ss_pred             CCC-CCCCccccccCCCCCceEE-----------ecCCCCccceeEEEeeeec--CC-CccccccccCCCCCCCCccccc
Q 006207          204 VSR-PSSLSTIRIDHDSAGMLAI-----------NLPPNSCRSFRFGFLGVQS--GD-SSKQCSKVKNSCSPRPSKEAKE  268 (657)
Q Consensus       204 ~~r-~~sls~i~~~~d~~g~L~V-----------~vP~dl~~~L~~s~i~V~~--~~-~~k~~~~~~~~~~~~~~~~~~~  268 (657)
                      .|| +++++.+|.+.+ .+.+.+           .++....++++|.......  ++ ...+.+.   +..+  .     
T Consensus       347 ~Fr~drglA~LR~~~d-~~~l~l~P~s~~~~~~~~~~~~~~k~lRVrI~~k~~~e~d~~lsG~S~---~~~~--~-----  415 (687)
T 4gwp_B          347 TYKHDRGIANIRNNIE-SQNLDLIPHSSSVFKGTDFVHSVKKFLRVRIFTKIESEDDYILSGESV---MDRD--S-----  415 (687)
T ss_dssp             CCCSSCCCEEEECTTS-CEEEECSCC------CCCSSCSSCEECCCCEEEECTTSCSCCEEEECC---CCCS--C-----
T ss_pred             hhccccceeeeeccCC-CCceeecccccccccccccccCCCceEEEEEEeeccCCCCceEecccc---CCcc--c-----
Confidence            787 699999997443 333332           2344445555543332210  11 1111111   1111  1     


Q ss_pred             cCCchhhhHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCce-EEeeeccceEEEeecCCeeEEEEeccCCCCCCccccc
Q 006207          269 SVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGV-NVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSW  347 (657)
Q Consensus       269 ~~~d~~~~~~w~~~L~~AQ~sLFceELF~~L~REA~ql~s~i-~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~  347 (657)
                       ..+......++.+|++||++|||+|||++|.|||.+|.++. .|   +++.|.+.++++..|.|+|++.+.+...... 
T Consensus       416 -~~~~~~~~~ie~~I~~AR~~IFEEELF~eL~REAr~L~s~gV~v---~~~~i~i~~~~~~~i~ielv~ld~~~~~~~~-  490 (687)
T 4gwp_B          416 -ESEEAETKDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSI---ENENKVIIELPNEKFEIELLSLDDDSIVNHE-  490 (687)
T ss_dssp             -SSCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCB---TTTBCEEEETTTTEEEEECCTTCSEECCCCC-
T ss_pred             -ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceeE---ecCeeEEecCCCcEEEEEeccCCcccccccc-
Confidence             11112346799999999999999999999999999998876 54   5699999999999999999976543211000 


Q ss_pred             ccccccccccccccCCccchhhhhhhhhccCCCCCCCcchHHHHHHHHHHHHhhccCCCCCCcCcccCCCCCCCCCchhH
Q 006207          348 VNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLG  427 (657)
Q Consensus       348 ~~d~~~~~~L~l~~~~~~~~~~~~~~~~~~~~~~~n~~s~eiyL~q~~~e~~~~~~~e~l~~~~~~~~g~~a~~~~~LL~  427 (657)
                       .+      .+  +.+-..+.-             -..++.+-|.+.+|.++..+..-.+....+++     .....||.
T Consensus       491 -~~------~s--~~~d~~A~l-------------I~~~LrLLL~~~hr~nlrrR~~~p~~lt~~~~-----~~~~~LLR  543 (687)
T 4gwp_B          491 -QD------LP--KINDKRANL-------------MLVMLRLLLVVIFKKTLRSRISSPHGLINLNV-----DDDILIIR  543 (687)
T ss_dssp             -CC------CC--CHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHSTTCCCSCCG-----GGTTTTHH
T ss_pred             -cc------CC--CCCcHHHHH-------------HHHHHHHHHHHHHHHHHhccCCCCCcccCCCC-----CCCcchHH
Confidence             00      00  000000000             01234555555555544443333333332222     22356999


Q ss_pred             HHHHhhhhhhhhhhHHHHHhhhhcCC-Cceee
Q 006207          428 HFCLSLAHRIFSNKVHVELENAVCGV-PYLHL  458 (657)
Q Consensus       428 ~f~~~~~Hr~~s~kv~~~Le~~v~~v-p~l~~  458 (657)
                      .++.-.+|+.....+...|.+.+..+ +..-+
T Consensus       544 Pil~~lrH~~~~~~l~~~l~~~v~~~~~~a~l  575 (687)
T 4gwp_B          544 PILGKVRFANYKLLLKKIIKDYVLDIVPGSSI  575 (687)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            99999999999999999998877655 44443

>4h62_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}

Probab=98.50  E-value=4.3e-07  Score=95.22  Aligned_cols=148  Identities=9%  Similarity=0.053  Sum_probs=97.4

Q ss_pred             hhHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCce-EEeeeccceEEEeecCCeeEEEEeccCCCCCCccccccccccc
Q 006207          275 CVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGV-NVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVE  353 (657)
Q Consensus       275 ~~~~w~~~L~~AQ~sLFceELF~~L~REA~ql~s~i-~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~~~d~~~  353 (657)
                      ...++.+.+++|+++||++|||++|.|||..|.++. .+   +++.|.+.++++..+.|+|+.-+.++.+.....     
T Consensus        46 ~~~~I~~~I~~AR~~iFEeELf~eL~REAr~L~sygV~~---~~~~i~i~~~~~~~i~ielv~ld~~~~~~~~~~-----  117 (312)
T 4h62_Q           46 ETKDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSI---ENENKVIIELPNEKFEIELLSLDDDSIVNHEQD-----  117 (312)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGTEEE---EETTEEEEECSSEEEEEEEECSSCC-------------
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEE---ecCeEEEEcCCCCEEEEEeecCCCccccccccc-----
Confidence            446799999999999999999999999999998876 54   458899999999999999997664331110000     


Q ss_pred             ccccccccCCccchhhhhhhhhccCCCCCCCcchHHHHHHHHHHHHhhccCCCCCCcCcccCCCCCCCCCchhHHHHHhh
Q 006207          354 SGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSL  433 (657)
Q Consensus       354 ~~~L~l~~~~~~~~~~~~~~~~~~~~~~~n~~s~eiyL~q~~~e~~~~~~~e~l~~~~~~~~g~~a~~~~~LL~~f~~~~  433 (657)
                         .+  +.+-..++-.             ..++.+-|....+.++..+...++..+.+++     .....||..+++-.
T Consensus       118 ---~~--~~~d~~A~~I-------------~~~LrLLL~~aHr~nlr~R~~~P~~~tk~~~-----~~~~~LLRPil~~l  174 (312)
T 4h62_Q          118 ---LP--KINDKRANLM-------------LVMLRLLLVVIFKKTLRSRISSPHGLINLNV-----DDDILIIRPILGKV  174 (312)
T ss_dssp             ---CC--CTTHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHTTTSSCCCCCH-----HHHCCSHHHHHHHH
T ss_pred             ---cC--CcchHHHHHH-------------HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-----CCCcccHHHHHHHH
Confidence               00  0011111100             1244555555555555444333333433332     22455999999999


Q ss_pred             hhhhhhhhHHHHHhhhhcCC
Q 006207          434 AHRIFSNKVHVELENAVCGV  453 (657)
Q Consensus       434 ~Hr~~s~kv~~~Le~~v~~v  453 (657)
                      +|......+...|++++..+
T Consensus       175 rH~~~~~~l~~~l~~~vl~i  194 (312)
T 4h62_Q          175 RFANYKLLLKKIIKDYVLDI  194 (312)
T ss_dssp             HHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999877

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00